Query gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 165 No_of_seqs 128 out of 2082 Neff 4.9 Searched_HMMs 39220 Date Sun May 22 20:23:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780157.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 TIGR01162 purE phosphoribosyla 100.0 0 0 450.2 15.3 158 7-164 1-159 (159) 2 COG0041 PurE Phosphoribosylcar 100.0 0 0 394.2 17.1 159 4-164 2-160 (162) 3 pfam00731 AIRC AIR carboxylase 100.0 0 0 389.6 16.0 150 5-156 1-150 (150) 4 COG1691 NCAIR mutase (PurE)-re 100.0 4.8E-28 1.2E-32 203.1 10.5 123 6-136 119-249 (254) 5 KOG2835 consensus 99.9 4E-26 1E-30 190.7 3.7 158 3-164 207-364 (373) 6 PRK09423 gldA glycerol dehydro 97.4 0.0016 4.1E-08 44.2 8.9 90 5-94 30-120 (366) 7 pfam00465 Fe-ADH Iron-containi 97.1 0.005 1.3E-07 41.1 8.7 90 5-94 23-133 (312) 8 PRK13054 lipid kinase; Reviewe 96.8 0.021 5.3E-07 37.1 9.5 88 1-92 1-93 (299) 9 PRK13337 putative lipid kinase 96.6 0.03 7.8E-07 36.0 9.6 86 3-92 1-93 (305) 10 PRK13055 putative lipid kinase 96.3 0.077 2E-06 33.4 9.8 87 3-92 1-94 (334) 11 PRK10624 L-1,2-propanediol oxi 96.2 0.045 1.2E-06 34.9 8.2 90 5-94 30-142 (381) 12 PRK09860 putative alcohol dehy 96.0 0.06 1.5E-06 34.0 8.3 90 5-94 32-142 (383) 13 PRK00843 egsA NAD(P)-dependent 95.6 0.1 2.7E-06 32.5 8.1 89 4-93 34-123 (351) 14 COG1454 EutG Alcohol dehydroge 95.5 0.15 3.9E-06 31.5 8.5 90 5-94 30-140 (377) 15 pfam01761 DHQ_synthase 3-dehyd 95.4 0.3 7.6E-06 29.6 9.8 88 4-91 19-115 (310) 16 COG0371 GldA Glycerol dehydrog 95.2 0.074 1.9E-06 33.5 6.3 100 5-106 31-132 (360) 17 pfam06506 PrpR_N Propionate ca 95.1 0.16 4E-06 31.4 7.7 111 28-151 4-122 (169) 18 cd06321 PBP1_ABC_sugar_binding 94.1 0.6 1.5E-05 27.6 14.0 129 6-154 1-148 (271) 19 PRK00861 putative lipid kinase 93.8 0.7 1.8E-05 27.2 9.4 83 3-91 1-89 (296) 20 cd01539 PBP1_GGBP Periplasmic 93.2 0.87 2.2E-05 26.5 14.9 86 6-91 1-91 (303) 21 COG2984 ABC-type uncharacteriz 93.2 0.59 1.5E-05 27.6 7.3 79 6-86 32-113 (322) 22 cd06305 PBP1_methylthioribose_ 92.7 1 2.6E-05 26.1 9.1 82 6-89 1-87 (273) 23 PRK11914 diacylglycerol kinase 92.5 1.1 2.8E-05 25.9 10.1 83 4-91 6-94 (304) 24 COG2515 Acd 1-aminocyclopropan 92.0 1.3 3.2E-05 25.5 8.2 97 7-106 119-231 (323) 25 cd06325 PBP1_ABC_uncharacteriz 91.5 1.4 3.5E-05 25.3 7.5 84 6-91 1-90 (281) 26 PRK13805 bifunctional acetalde 91.3 1.3 3.3E-05 25.4 7.2 74 4-77 482-557 (862) 27 PRK13059 putative lipid kinase 90.9 1.6 4.1E-05 24.8 9.5 97 5-110 2-105 (294) 28 COG3199 Predicted inorganic po 90.7 1.3 3.3E-05 25.4 6.7 72 44-136 85-157 (355) 29 TIGR03405 Phn_Fe-ADH phosphona 89.3 1.8 4.5E-05 24.6 6.5 90 5-95 24-139 (355) 30 cd06310 PBP1_ABC_sugar_binding 88.8 2.4 6E-05 23.7 13.8 83 6-88 1-88 (273) 31 pfam04392 ABC_sub_bind ABC tra 88.4 2.5 6.4E-05 23.6 7.7 72 18-91 15-89 (292) 32 PRK10310 galactitol-specific P 88.3 2.5 6.5E-05 23.5 7.2 83 3-103 1-86 (94) 33 PRK00002 aroB 3-dehydroquinate 88.0 2.6 6.7E-05 23.4 9.1 87 5-91 33-128 (360) 34 cd06316 PBP1_ABC_sugar_binding 87.8 2.7 6.9E-05 23.3 8.4 82 6-88 1-87 (294) 35 cd06300 PBP1_ABC_sugar_binding 87.4 2.9 7.3E-05 23.2 7.7 84 6-89 1-92 (272) 36 PRK05653 fabG 3-ketoacyl-(acyl 87.3 2.9 7.4E-05 23.1 8.2 49 1-55 1-49 (246) 37 KOG2835 consensus 86.8 0.57 1.4E-05 27.7 2.7 62 18-81 250-312 (373) 38 cd06301 PBP1_rhizopine_binding 85.8 3.5 8.9E-05 22.6 12.2 82 6-88 1-87 (272) 39 TIGR02483 PFK_mixed phosphofru 85.5 1 2.6E-05 26.1 3.4 80 46-131 93-192 (339) 40 cd01538 PBP1_ABC_xylose_bindin 85.3 3.7 9.4E-05 22.5 8.8 82 6-89 1-87 (288) 41 PRK02649 ppnK inorganic polyph 84.8 1.8 4.5E-05 24.5 4.4 86 4-90 1-100 (305) 42 PRK09072 short chain dehydroge 84.7 3.9 0.0001 22.3 7.3 31 1-33 1-31 (262) 43 cd03786 GT1_UDP-GlcNAc_2-Epime 84.3 4.1 0.0001 22.2 8.4 41 6-46 1-42 (363) 44 PRK02645 ppnK inorganic polyph 83.2 2.5 6.4E-05 23.6 4.6 85 1-90 1-89 (304) 45 cd03522 MoeA_like MoeA_like. T 82.9 4.6 0.00012 21.8 6.5 101 4-105 159-293 (312) 46 cd06322 PBP1_ABC_sugar_binding 82.6 4.7 0.00012 21.8 14.4 81 7-89 2-87 (267) 47 pfam00781 DAGK_cat Diacylglyce 82.5 4.8 0.00012 21.7 6.6 83 21-111 18-106 (127) 48 cd01391 Periplasmic_Binding_Pr 82.2 4.9 0.00013 21.7 9.7 87 6-92 1-92 (269) 49 cd01536 PBP1_ABC_sugar_binding 81.8 5.1 0.00013 21.6 9.4 81 6-88 1-86 (267) 50 PRK10586 hypothetical protein; 81.7 4.7 0.00012 21.8 5.6 87 5-94 35-122 (362) 51 PRK01372 ddl D-alanine--D-alan 81.5 4.3 0.00011 22.1 5.3 104 2-115 2-115 (304) 52 PRK06346 consensus 81.3 5.3 0.00014 21.4 8.3 52 1-58 1-52 (251) 53 cd06306 PBP1_TorT-like TorT-li 80.9 5.5 0.00014 21.4 8.8 83 6-88 1-87 (268) 54 cd06318 PBP1_ABC_sugar_binding 80.8 5.5 0.00014 21.4 9.2 82 6-89 1-87 (282) 55 cd06320 PBP1_allose_binding Pe 80.7 5.6 0.00014 21.3 8.7 84 6-89 1-89 (275) 56 cd06304 PBP1_BmpA_like Peripla 80.4 5.7 0.00014 21.3 7.0 59 7-68 2-65 (260) 57 cd06323 PBP1_ribose_binding Pe 80.2 5.8 0.00015 21.2 9.3 81 7-89 2-87 (268) 58 PRK07774 short chain dehydroge 78.8 6.4 0.00016 20.9 8.5 57 1-63 2-58 (250) 59 PRK07890 short chain dehydroge 78.7 6.4 0.00016 20.9 8.5 55 1-61 1-55 (258) 60 cd06354 PBP1_BmpA_PnrA_like Pe 76.6 7.3 0.00019 20.5 7.5 59 6-67 1-65 (265) 61 COG1597 LCB5 Sphingosine kinas 76.6 7.4 0.00019 20.5 6.7 108 12-123 14-130 (301) 62 TIGR02638 lactal_redase lactal 76.4 7.2 0.00018 20.6 5.2 101 17-121 43-194 (380) 63 PRK06949 short chain dehydroge 76.0 7.6 0.00019 20.4 8.2 67 1-70 5-97 (258) 64 PRK07454 short chain dehydroge 75.6 7.8 0.0002 20.4 8.2 67 1-70 1-94 (241) 65 cd06319 PBP1_ABC_sugar_binding 75.4 7.9 0.0002 20.3 15.0 81 6-89 1-87 (277) 66 COG0381 WecB UDP-N-acetylgluco 75.1 6.8 0.00017 20.7 4.8 55 4-58 3-58 (383) 67 PRK13057 putative lipid kinase 74.9 8.1 0.00021 20.3 6.9 68 18-91 13-82 (287) 68 cd06311 PBP1_ABC_sugar_binding 74.5 8.3 0.00021 20.2 8.8 84 7-90 2-93 (274) 69 cd06309 PBP1_YtfQ_like Peripla 73.5 8.8 0.00022 20.0 10.7 81 7-89 2-87 (273) 70 PRK08217 fabG 3-ketoacyl-(acyl 73.4 8.9 0.00023 20.0 8.3 68 1-69 1-92 (253) 71 PRK07576 short chain dehydroge 72.1 9.5 0.00024 19.8 8.8 53 1-59 4-56 (260) 72 PRK09701 D-allose transporter 71.8 9.6 0.00025 19.8 8.6 86 4-89 24-114 (311) 73 KOG3857 consensus 71.5 9.8 0.00025 19.7 6.3 111 5-115 71-236 (465) 74 COG4126 Hydantoin racemase [Am 71.3 2.1 5.3E-05 24.1 1.4 62 24-86 126-201 (230) 75 PRK07231 fabG 3-ketoacyl-(acyl 70.3 10 0.00026 19.6 6.7 30 1-32 2-31 (250) 76 PRK03708 ppnK inorganic polyph 70.2 4.8 0.00012 21.8 3.0 84 6-90 2-88 (278) 77 PRK06940 short chain dehydroge 70.0 10 0.00027 19.5 7.8 52 2-61 2-53 (277) 78 PRK03202 6-phosphofructokinase 69.8 11 0.00027 19.5 8.3 87 3-91 1-127 (323) 79 PRK07814 short chain dehydroge 69.7 11 0.00027 19.5 8.5 66 2-70 7-98 (263) 80 PRK06124 gluconate 5-dehydroge 69.0 11 0.00028 19.4 8.0 53 1-59 10-62 (259) 81 cd06353 PBP1_BmpA_Med_like Per 68.5 11 0.00029 19.3 6.5 128 6-150 1-143 (258) 82 PRK12939 short chain dehydroge 68.2 11 0.00029 19.3 8.4 66 2-70 4-95 (250) 83 cd06308 PBP1_sensor_kinase_lik 68.0 12 0.00029 19.3 7.7 81 7-89 2-88 (270) 84 PRK08862 short chain dehydroge 67.8 12 0.0003 19.2 7.5 30 1-32 1-30 (227) 85 PRK10355 xylF D-xylose transpo 67.5 12 0.0003 19.2 9.1 85 4-90 25-114 (330) 86 COG0796 MurI Glutamate racemas 66.6 12 0.00031 19.1 5.1 89 3-91 4-100 (269) 87 PRK12745 3-ketoacyl-(acyl-carr 66.5 12 0.00032 19.1 8.4 67 1-70 1-94 (259) 88 PRK08277 D-mannonate oxidoredu 66.3 12 0.00032 19.1 7.7 66 1-69 6-97 (278) 89 cd03419 GRX_GRXh_1_2_like Glut 65.5 13 0.00033 19.0 6.2 74 9-106 2-75 (82) 90 pfam02016 Peptidase_S66 LD-car 65.4 13 0.00033 18.9 6.4 66 7-72 1-74 (281) 91 TIGR01357 aroB 3-dehydroquinat 65.0 13 0.00034 18.9 8.3 148 5-153 26-199 (361) 92 PRK05565 fabG 3-ketoacyl-(acyl 64.9 13 0.00034 18.9 8.0 68 1-70 1-94 (247) 93 PRK06123 short chain dehydroge 63.8 14 0.00035 18.7 8.3 65 3-69 1-91 (249) 94 pfam10096 DUF2334 Uncharacteri 63.8 14 0.00035 18.7 6.3 51 14-64 12-73 (238) 95 PRK00865 glutamate racemase; P 63.7 14 0.00036 18.7 4.7 86 3-90 1-96 (262) 96 cd00763 Bacterial_PFK Phosphof 62.8 14 0.00037 18.6 5.5 121 5-132 1-178 (317) 97 cd03028 GRX_PICOT_like Glutare 62.8 14 0.00037 18.6 4.8 49 4-55 7-58 (90) 98 cd07304 Chorismate_synthase Ch 62.2 15 0.00038 18.6 5.8 95 22-138 132-256 (344) 99 cd07062 Peptidase_S66_mccF_lik 62.1 15 0.00038 18.6 7.4 67 6-72 2-79 (308) 100 PRK06113 7-alpha-hydroxysteroi 62.1 15 0.00038 18.5 8.6 30 1-32 7-36 (255) 101 PRK05786 fabG 3-ketoacyl-(acyl 61.9 15 0.00038 18.5 7.6 51 1-57 1-51 (238) 102 PRK08085 gluconate 5-dehydroge 61.9 15 0.00038 18.5 8.3 30 1-32 5-34 (254) 103 PRK01231 ppnK inorganic polyph 61.8 15 0.00038 18.5 4.9 89 1-90 1-94 (296) 104 TIGR03568 NeuC_NnaA UDP-N-acet 61.5 15 0.00039 18.5 8.9 85 5-89 1-124 (365) 105 PRK05875 short chain dehydroge 61.5 15 0.00039 18.5 6.5 32 1-34 3-34 (277) 106 PRK10916 ADP-heptose:LPS hepto 61.5 15 0.00039 18.5 5.3 70 9-88 217-286 (348) 107 PRK07326 short chain dehydroge 61.1 16 0.0004 18.4 7.3 68 1-70 1-91 (235) 108 COG0303 MoeA Molybdopterin bio 60.8 16 0.0004 18.4 5.2 111 4-116 176-305 (404) 109 PRK12935 acetoacetyl-CoA reduc 60.5 16 0.0004 18.4 8.3 68 1-70 2-95 (247) 110 PRK06830 diphosphate--fructose 60.1 16 0.00041 18.3 4.9 85 38-124 150-260 (442) 111 cd06317 PBP1_ABC_sugar_binding 59.6 16 0.00042 18.3 14.9 80 7-88 2-87 (275) 112 PRK07479 consensus 59.4 17 0.00042 18.2 8.2 67 1-70 1-93 (252) 113 PRK12743 acetoin dehydrogenase 59.2 17 0.00043 18.2 8.2 55 15-70 35-91 (253) 114 TIGR03590 PseG pseudaminic aci 59.0 17 0.00043 18.2 7.8 26 6-31 173-198 (280) 115 PRK09730 hypothetical protein; 58.7 17 0.00043 18.2 7.8 54 16-70 35-90 (247) 116 PRK13138 consensus 58.6 17 0.00044 18.2 11.0 116 16-156 126-263 (264) 117 PRK10222 L-ascorbate-specific 58.4 7.2 0.00018 20.6 2.1 56 21-89 5-60 (85) 118 COG0695 GrxC Glutaredoxin and 58.2 17 0.00044 18.1 5.3 46 9-55 3-48 (80) 119 PRK07109 short chain dehydroge 58.1 17 0.00045 18.1 8.1 67 3-70 6-96 (338) 120 cd05212 NAD_bind_m-THF_DH_Cycl 57.9 18 0.00045 18.1 4.2 86 18-116 39-128 (140) 121 PRK07478 short chain dehydroge 57.6 18 0.00045 18.1 8.3 67 1-70 2-94 (254) 122 PRK13127 consensus 57.3 18 0.00046 18.0 10.6 120 16-158 123-260 (262) 123 PRK07035 short chain dehydroge 56.7 18 0.00047 18.0 8.2 30 1-32 4-33 (252) 124 PTZ00286 6-phospho-1-fructokin 56.6 18 0.00047 17.9 5.0 89 38-128 166-280 (486) 125 PRK01911 ppnK inorganic polyph 56.5 19 0.00047 17.9 4.1 84 6-91 2-95 (290) 126 PRK11574 hypothetical protein; 56.3 13 0.00033 18.9 3.2 66 3-68 1-75 (196) 127 PRK12937 short chain dehydroge 55.5 19 0.00049 17.8 8.4 68 1-70 1-94 (245) 128 pfam02608 Bmp Basic membrane p 55.4 19 0.00049 17.8 7.4 94 1-96 122-223 (302) 129 COG0743 Dxr 1-deoxy-D-xylulose 55.2 19 0.0005 17.8 7.2 118 6-139 2-121 (385) 130 KOG1208 consensus 55.0 20 0.0005 17.8 6.6 67 2-74 32-129 (314) 131 PRK09134 short chain dehydroge 54.6 20 0.00051 17.7 8.1 65 4-70 8-98 (256) 132 PRK06914 short chain dehydroge 54.3 20 0.00051 17.7 6.3 28 3-32 1-28 (280) 133 PRK06172 short chain dehydroge 54.1 20 0.00052 17.7 8.2 67 1-70 3-95 (253) 134 PRK13936 phosphoheptose isomer 53.5 19 0.00048 17.9 3.6 46 48-93 32-86 (197) 135 PRK08263 short chain dehydroge 53.2 21 0.00053 17.6 6.9 62 3-70 1-88 (275) 136 PRK12463 chorismate synthase; 52.6 21 0.00054 17.5 6.2 94 22-137 147-273 (390) 137 PRK05382 chorismate synthase; 52.3 22 0.00055 17.5 6.3 95 22-138 139-262 (357) 138 PRK00430 fis DNA-binding prote 51.5 12 0.0003 19.2 2.3 23 127-149 74-96 (98) 139 TIGR03206 benzo_BadH 2-hydroxy 51.4 22 0.00057 17.4 7.9 54 16-70 36-91 (250) 140 pfam01264 Chorismate_synt Chor 50.9 23 0.00058 17.4 6.1 95 22-138 131-254 (346) 141 cd01988 Na_H_Antiporter_C The 50.5 23 0.00059 17.3 5.5 62 18-82 56-117 (132) 142 pfam01297 SBP_bac_9 Periplasmi 50.3 23 0.00059 17.3 7.5 24 59-82 47-71 (272) 143 PRK00414 gmhA phosphoheptose i 50.3 18 0.00046 18.0 3.1 33 49-81 34-66 (192) 144 PRK13937 phosphoheptose isomer 50.2 19 0.00049 17.8 3.2 45 47-91 30-83 (192) 145 pfam02514 CobN-Mg_chel CobN/Ma 49.5 24 0.00061 17.2 7.0 103 3-106 67-186 (1064) 146 PRK12938 acetyacetyl-CoA reduc 49.4 24 0.00061 17.2 7.7 67 3-71 1-93 (246) 147 PRK05867 short chain dehydroge 49.3 24 0.00061 17.2 8.3 48 2-55 6-53 (253) 148 PRK07666 fabG 3-ketoacyl-(acyl 49.3 24 0.00061 17.2 8.1 68 2-70 3-94 (238) 149 PRK07707 consensus 48.9 24 0.00062 17.2 7.3 46 5-55 2-47 (239) 150 PRK06227 consensus 48.8 24 0.00062 17.2 8.3 67 1-70 1-93 (256) 151 PRK10936 periplasmic sensory p 48.5 25 0.00063 17.1 12.2 82 6-88 47-131 (340) 152 CHL00174 accD acetyl-CoA carbo 48.5 12 0.0003 19.2 1.9 30 79-109 175-204 (305) 153 cd06286 PBP1_CcpB_like Ligand- 48.4 25 0.00063 17.1 11.1 78 7-88 2-83 (260) 154 PRK08936 glucose-1-dehydrogena 47.6 26 0.00065 17.0 8.2 71 2-73 4-99 (261) 155 PRK01905 DNA-binding protein F 47.5 14 0.00036 18.7 2.2 23 127-149 53-75 (77) 156 TIGR02195 heptsyl_trn_II lipop 47.3 26 0.00066 17.0 3.5 76 8-93 227-303 (361) 157 cd06378 PBP1_iGluR_NMDA_NR2 N- 47.2 26 0.00066 17.0 5.6 47 44-90 46-97 (362) 158 PRK12936 3-ketoacyl-(acyl-carr 46.9 26 0.00067 17.0 7.9 30 1-32 2-31 (245) 159 PRK12827 short chain dehydroge 46.7 26 0.00067 17.0 8.5 68 2-71 3-99 (251) 160 PRK06138 short chain dehydroge 46.6 26 0.00067 16.9 8.0 68 1-70 1-92 (252) 161 pfam01522 Polysacc_deac_1 Poly 46.2 27 0.00068 16.9 6.2 62 3-70 3-66 (123) 162 pfam00532 Peripla_BP_1 family. 45.8 27 0.00069 16.9 13.0 80 6-88 3-87 (281) 163 cd06312 PBP1_ABC_sugar_binding 45.6 27 0.0007 16.8 11.8 82 6-88 1-88 (271) 164 pfam06253 MTTB Trimethylamine 45.4 28 0.0007 16.8 6.5 96 10-113 191-314 (505) 165 TIGR00676 fadh2 5,10-methylene 45.4 28 0.0007 16.8 5.1 77 19-107 61-137 (302) 166 PRK09432 metF 5,10-methylenete 45.3 28 0.00071 16.8 6.6 63 7-69 56-120 (296) 167 pfam00462 Glutaredoxin Glutare 45.2 28 0.00071 16.8 5.3 42 11-54 3-44 (60) 168 KOG4626 consensus 45.1 28 0.00071 16.8 3.7 52 88-148 842-894 (966) 169 PRK09135 pteridine reductase; 45.1 28 0.00071 16.8 7.5 32 1-34 2-33 (249) 170 cd01139 TroA_f Periplasmic bin 45.0 24 0.00062 17.2 3.1 25 138-162 147-171 (342) 171 COG0337 AroB 3-dehydroquinate 44.5 28 0.00073 16.7 8.9 148 5-153 34-207 (360) 172 PRK13307 bifunctional formalde 43.9 29 0.00074 16.7 5.8 61 5-71 251-311 (392) 173 PRK08251 short chain dehydroge 43.7 29 0.00074 16.7 7.8 46 4-55 1-46 (248) 174 cd07025 Peptidase_S66 LD-Carbo 43.5 29 0.00075 16.6 6.1 102 7-111 1-113 (282) 175 TIGR00147 TIGR00147 conserved 43.5 29 0.00075 16.6 7.7 83 9-92 12-99 (316) 176 PRK06077 fabG 3-ketoacyl-(acyl 43.4 30 0.00075 16.6 8.0 56 15-71 36-93 (249) 177 PRK05654 acetyl-CoA carboxylas 43.3 15 0.00039 18.4 1.9 72 44-118 97-205 (288) 178 PRK08213 gluconate 5-dehydroge 43.3 30 0.00076 16.6 8.1 68 2-70 9-100 (259) 179 PRK08642 fabG 3-ketoacyl-(acyl 43.2 30 0.00076 16.6 6.2 32 1-34 2-33 (254) 180 TIGR02456 treS_nterm trehalose 43.1 30 0.00076 16.6 3.7 50 16-65 26-95 (560) 181 COG4026 Uncharacterized protei 43.0 30 0.00076 16.6 6.4 61 2-66 3-65 (290) 182 PRK04176 ribulose-1,5-biphosph 42.9 30 0.00077 16.6 4.9 51 15-66 72-125 (257) 183 PRK06720 hypothetical protein; 42.3 31 0.00078 16.5 7.6 55 1-61 12-66 (169) 184 PRK12746 short chain dehydroge 42.3 31 0.00078 16.5 7.9 29 2-32 3-31 (254) 185 pfam02006 DUF137 Protein of un 42.0 31 0.00079 16.5 5.5 73 19-93 19-100 (178) 186 COG0205 PfkA 6-phosphofructoki 41.8 31 0.0008 16.5 3.6 123 3-131 1-180 (347) 187 cd06313 PBP1_ABC_sugar_binding 41.6 32 0.0008 16.4 10.0 77 12-90 8-88 (272) 188 PRK07097 gluconate 5-dehydroge 41.1 32 0.00082 16.4 8.5 71 1-72 6-100 (265) 189 cd02976 NrdH NrdH-redoxin (Nrd 40.9 32 0.00082 16.4 5.8 43 9-53 2-44 (73) 190 PRK13938 phosphoheptose isomer 40.9 23 0.00059 17.3 2.5 48 35-82 18-68 (196) 191 PRK10073 predicted glycosyl tr 40.7 33 0.00083 16.4 7.2 55 1-55 2-60 (329) 192 PRK13609 diacylglycerol glucos 40.5 33 0.00083 16.3 5.1 33 1-33 1-35 (388) 193 cd01019 ZnuA Zinc binding prot 40.3 33 0.00084 16.3 7.7 31 59-89 52-83 (286) 194 PRK12826 3-ketoacyl-(acyl-carr 40.2 33 0.00084 16.3 8.1 29 2-32 3-31 (253) 195 PRK07074 short chain dehydroge 40.2 33 0.00084 16.3 6.9 26 4-31 1-26 (256) 196 PRK06555 pyrophosphate--fructo 40.1 33 0.00085 16.3 3.8 44 47-91 100-150 (403) 197 pfam05582 Peptidase_U57 YabG p 39.9 33 0.00085 16.3 6.5 43 14-56 112-154 (287) 198 TIGR01278 DPOR_BchB light-inde 39.8 34 0.00085 16.3 3.6 42 19-60 225-268 (562) 199 PRK07041 short chain dehydroge 39.8 34 0.00086 16.3 7.4 49 1-55 3-51 (240) 200 PRK06125 short chain dehydroge 39.6 34 0.00086 16.3 7.8 64 1-69 3-91 (259) 201 cd01541 PBP1_AraR Ligand-bindi 39.5 34 0.00086 16.2 13.7 59 7-67 2-63 (273) 202 PRK10703 DNA-binding transcrip 38.9 35 0.00088 16.2 11.1 83 4-88 59-145 (335) 203 cd04743 NPD_PKS 2-Nitropropane 38.9 35 0.00088 16.2 6.9 50 3-66 81-130 (320) 204 PRK10680 molybdopterin biosynt 38.8 35 0.00088 16.2 5.0 83 3-88 176-276 (411) 205 cd03027 GRX_DEP Glutaredoxin ( 38.4 35 0.0009 16.1 6.3 43 10-54 4-46 (73) 206 cd06367 PBP1_iGluR_NMDA N-term 38.2 35 0.0009 16.1 7.7 119 6-124 4-150 (362) 207 cd00363 PFK Phosphofructokinas 38.0 36 0.00091 16.1 5.6 48 43-91 76-130 (338) 208 PRK06197 short chain dehydroge 37.8 36 0.00092 16.1 6.1 30 2-33 13-42 (306) 209 KOG1205 consensus 37.7 36 0.00092 16.1 6.4 68 1-71 8-103 (282) 210 PRK02155 ppnK inorganic polyph 37.6 36 0.00092 16.1 3.3 81 5-90 6-95 (291) 211 cd01452 VWA_26S_proteasome_sub 37.4 37 0.00093 16.0 8.0 72 3-74 106-180 (187) 212 cd01475 vWA_Matrilin VWA_Matri 37.3 37 0.00093 16.0 5.4 50 7-56 6-75 (224) 213 pfam06258 DUF1022 Protein of u 37.3 37 0.00094 16.0 8.2 102 4-119 143-255 (308) 214 pfam01177 Asp_Glu_race Asp/Glu 37.1 37 0.00094 16.0 5.3 78 8-88 2-93 (212) 215 cd00578 L-fuc_L-ara-isomerases 36.8 37 0.00095 16.0 7.9 82 5-87 1-93 (452) 216 cd00764 Eukaryotic_PFK Phospho 36.7 37 0.00096 16.0 6.9 34 42-76 80-113 (762) 217 COG1929 Glycerate kinase [Carb 36.6 38 0.00096 15.9 3.6 77 36-114 263-354 (378) 218 TIGR02482 PFKA_ATP 6-phosphofr 36.5 38 0.00096 15.9 5.7 85 6-93 1-126 (302) 219 PRK07370 enoyl-(acyl carrier p 36.5 38 0.00096 15.9 8.0 71 1-71 3-100 (259) 220 PRK10638 glutaredoxin 3; Provi 36.4 38 0.00097 15.9 5.8 72 6-106 3-74 (83) 221 TIGR02909 spore_YkwD uncharact 36.3 19 0.0005 17.8 1.5 33 24-56 58-95 (129) 222 PRK07775 short chain dehydroge 36.1 38 0.00097 15.9 8.0 47 3-55 8-54 (275) 223 PRK08063 enoyl-(acyl carrier p 36.1 38 0.00098 15.9 8.2 53 17-70 39-93 (250) 224 PRK10116 universal stress prot 35.8 39 0.00099 15.9 4.5 70 19-92 61-141 (142) 225 COG2008 GLY1 Threonine aldolas 35.7 39 0.00099 15.9 4.4 143 8-161 102-269 (342) 226 pfam03358 FMN_red NADPH-depend 35.5 39 0.001 15.8 8.1 53 5-57 1-68 (147) 227 cd01540 PBP1_arabinose_binding 35.5 39 0.001 15.8 7.7 81 6-89 1-86 (289) 228 PRK13111 trpA tryptophan synth 35.5 39 0.001 15.8 10.7 122 16-157 121-255 (256) 229 TIGR02855 spore_yabG sporulati 35.4 39 0.001 15.8 6.1 50 14-66 120-170 (292) 230 cd01080 NAD_bind_m-THF_DH_Cycl 35.4 39 0.001 15.8 3.4 48 18-74 55-102 (168) 231 pfam00239 Resolvase Resolvase, 34.8 40 0.001 15.8 4.4 56 10-65 38-93 (139) 232 cd06294 PBP1_ycjW_transcriptio 34.8 40 0.001 15.8 10.8 78 7-88 2-89 (270) 233 TIGR02974 phageshock_pspF psp 34.8 17 0.00044 18.2 1.0 20 129-148 330-349 (349) 234 PRK08219 short chain dehydroge 34.7 40 0.001 15.8 5.6 62 3-71 1-82 (226) 235 PRK10653 D-ribose transporter 34.4 41 0.001 15.7 14.3 84 4-89 26-114 (295) 236 pfam02954 HTH_8 Bacterial regu 34.1 23 0.00058 17.3 1.5 20 129-148 23-42 (42) 237 PRK06194 hypothetical protein; 34.1 41 0.001 15.7 8.2 66 2-70 3-94 (301) 238 cd05006 SIS_GmhA Phosphoheptos 33.8 42 0.0011 15.7 3.3 37 47-83 21-57 (177) 239 cd01542 PBP1_TreR_like Ligand- 33.7 42 0.0011 15.7 10.6 79 7-88 2-84 (259) 240 cd01078 NAD_bind_H4MPT_DH NADP 33.5 42 0.0011 15.6 6.9 107 3-118 26-159 (194) 241 PRK08643 acetoin reductase; Va 33.4 42 0.0011 15.6 8.3 62 6-70 3-90 (256) 242 COG3002 Uncharacterized protei 33.2 43 0.0011 15.6 3.2 29 119-150 590-618 (880) 243 COG1879 RbsB ABC-type sugar tr 33.2 43 0.0011 15.6 9.2 87 5-91 34-125 (322) 244 cd06282 PBP1_GntR_like_2 Ligan 33.1 43 0.0011 15.6 9.5 80 7-88 2-85 (266) 245 TIGR02764 spore_ybaN_pdaB poly 33.0 43 0.0011 15.6 4.3 51 4-54 5-61 (198) 246 COG1979 Uncharacterized oxidor 32.8 43 0.0011 15.6 6.7 69 4-74 29-100 (384) 247 cd01537 PBP1_Repressors_Sugar_ 32.8 43 0.0011 15.6 9.9 81 6-88 1-85 (264) 248 PRK06198 short chain dehydroge 32.8 43 0.0011 15.6 8.3 54 3-61 4-57 (268) 249 PRK06182 short chain dehydroge 32.7 43 0.0011 15.5 5.4 67 3-71 1-86 (273) 250 cd03418 GRX_GRXb_1_3_like Glut 32.6 43 0.0011 15.5 6.0 71 10-106 3-73 (75) 251 PRK07856 short chain dehydroge 32.5 44 0.0011 15.5 7.6 68 1-70 4-87 (254) 252 PRK06196 oxidoreductase; Provi 32.4 44 0.0011 15.5 6.7 64 1-70 22-110 (316) 253 COG1951 TtdA Tartrate dehydrat 32.3 40 0.001 15.7 2.6 87 58-153 137-229 (297) 254 PRK08339 short chain dehydroge 32.2 44 0.0011 15.5 7.9 29 1-31 4-32 (263) 255 TIGR00875 talC transaldolase, 32.2 44 0.0011 15.5 4.2 38 15-53 142-179 (216) 256 cd03029 GRX_hybridPRX5 Glutare 32.2 44 0.0011 15.5 4.4 33 9-41 3-35 (72) 257 pfam00763 THF_DHG_CYH Tetrahyd 31.8 45 0.0011 15.5 6.8 62 3-64 28-92 (117) 258 pfam05681 Fumerase Fumarate hy 31.8 45 0.0011 15.5 3.6 71 58-136 127-200 (271) 259 PRK10886 DnaA initiator-associ 31.7 45 0.0011 15.4 3.5 42 50-91 32-82 (196) 260 PRK06139 short chain dehydroge 31.6 45 0.0012 15.4 7.6 67 3-70 4-94 (324) 261 COG4213 XylF ABC-type xylose t 31.5 45 0.0012 15.4 5.2 58 34-91 56-115 (341) 262 PRK12384 sorbitol-6-phosphate 31.3 46 0.0012 15.4 7.9 63 6-70 3-92 (259) 263 COG0532 InfB Translation initi 31.3 46 0.0012 15.4 7.1 83 7-105 83-165 (509) 264 PRK13761 hypothetical protein; 31.0 46 0.0012 15.4 5.8 72 19-93 82-161 (248) 265 PRK05866 short chain dehydroge 30.3 47 0.0012 15.3 8.1 66 2-70 37-128 (290) 266 cd01714 ETF_beta The electron 30.3 47 0.0012 15.3 4.7 81 7-91 56-144 (202) 267 PRK05854 short chain dehydroge 30.1 48 0.0012 15.3 6.8 45 2-52 11-55 (314) 268 PRK08594 enoyl-(acyl carrier p 30.1 48 0.0012 15.3 6.8 34 1-34 2-35 (256) 269 cd03768 SR_ResInv Serine Recom 30.0 48 0.0012 15.3 4.6 56 10-65 35-90 (126) 270 PRK08997 isocitrate dehydrogen 29.9 48 0.0012 15.2 4.9 36 3-38 1-36 (334) 271 PRK12825 fabG 3-ketoacyl-(acyl 29.8 48 0.0012 15.2 8.2 67 2-71 4-97 (250) 272 TIGR02663 nifX nitrogen fixati 29.7 49 0.0012 15.2 3.2 49 58-113 67-118 (125) 273 cd03055 GST_N_Omega GST_N fami 29.6 49 0.0012 15.2 4.0 44 7-51 18-61 (89) 274 PRK03372 ppnK inorganic polyph 29.5 49 0.0012 15.2 4.6 89 1-90 1-101 (303) 275 TIGR02477 PFKA_PPi diphosphate 29.4 49 0.0013 15.2 3.7 50 42-91 151-206 (566) 276 PRK06180 short chain dehydroge 29.0 50 0.0013 15.1 6.8 65 4-70 3-89 (277) 277 PRK05993 short chain dehydroge 28.9 50 0.0013 15.1 5.7 68 1-71 1-88 (277) 278 PRK06179 short chain dehydroge 28.5 51 0.0013 15.1 6.7 67 1-70 1-84 (270) 279 pfam00106 adh_short short chai 28.5 51 0.0013 15.1 7.7 65 6-71 26-92 (167) 280 cd02066 GRX_family Glutaredoxi 28.3 51 0.0013 15.1 6.1 69 10-105 3-71 (72) 281 PRK07062 short chain dehydroge 28.1 52 0.0013 15.1 8.3 68 1-70 4-98 (265) 282 PRK08220 2,3-dihydroxybenzoate 28.1 52 0.0013 15.0 7.9 68 1-70 4-88 (253) 283 COG1635 THI4 Ribulose 1,5-bisp 27.7 52 0.0013 15.0 3.2 47 17-64 79-128 (262) 284 TIGR01059 gyrB DNA gyrase, B s 27.7 36 0.00092 16.1 1.7 32 34-66 512-546 (818) 285 cd05566 PTS_IIB_galactitol PTS 27.7 53 0.0013 15.0 7.2 68 5-89 1-70 (89) 286 cd01917 ACS_2 Acetyl-CoA synth 27.7 53 0.0013 15.0 4.5 107 25-157 113-226 (287) 287 PRK07677 short chain dehydroge 27.7 53 0.0013 15.0 8.0 54 16-70 36-91 (254) 288 cd03061 GST_N_CLIC GST_N famil 27.5 53 0.0014 15.0 4.2 39 15-53 20-58 (91) 289 cd01473 vWA_CTRP CTRP for CS 27.2 54 0.0014 15.0 5.8 15 142-156 176-190 (192) 290 cd03047 GST_N_2 GST_N family, 27.2 54 0.0014 14.9 3.4 38 10-48 3-44 (73) 291 cd06324 PBP1_ABC_sugar_binding 27.2 54 0.0014 14.9 8.3 81 7-90 2-90 (305) 292 PRK05557 fabG 3-ketoacyl-(acyl 27.0 54 0.0014 14.9 8.3 67 1-70 1-94 (248) 293 cd06502 TA_like Low-specificit 26.6 55 0.0014 14.9 5.6 137 14-161 104-265 (338) 294 pfam04743 consensus 26.6 29 0.00074 16.7 1.0 43 105-149 37-79 (160) 295 COG2901 Fis Factor for inversi 26.6 49 0.0012 15.2 2.2 23 127-149 74-96 (98) 296 pfam00365 PFK Phosphofructokin 26.6 55 0.0014 14.9 5.5 48 43-91 76-125 (279) 297 KOG3984 consensus 26.5 37 0.00093 16.0 1.5 31 3-33 23-54 (286) 298 cd00537 MTHFR Methylenetetrahy 26.5 55 0.0014 14.9 6.8 63 7-69 32-96 (274) 299 PRK06114 short chain dehydroge 26.2 56 0.0014 14.8 8.2 68 2-72 13-107 (262) 300 TIGR00292 TIGR00292 thiazole b 26.2 34 0.00087 16.2 1.3 15 21-35 76-90 (283) 301 PRK05450 3-deoxy-manno-octulos 26.2 56 0.0014 14.8 3.9 54 21-74 53-106 (248) 302 pfam02882 THF_DHG_CYH_C Tetrah 26.1 56 0.0014 14.8 5.5 99 6-116 37-145 (159) 303 PRK13117 consensus 26.1 56 0.0014 14.8 7.0 53 16-71 130-184 (268) 304 cd06277 PBP1_LacI_like_1 Ligan 25.9 57 0.0014 14.8 12.9 125 7-155 2-147 (268) 305 PRK07533 enoyl-(acyl carrier p 25.9 57 0.0014 14.8 8.0 70 1-70 2-95 (254) 306 PRK06181 short chain dehydroge 25.9 57 0.0014 14.8 7.9 56 15-71 33-90 (263) 307 PRK09271 flavodoxin; Provision 25.7 57 0.0015 14.8 7.1 52 6-57 2-80 (160) 308 PRK08945 short chain dehydroge 25.6 57 0.0015 14.8 6.3 48 4-57 12-59 (245) 309 cd06314 PBP1_tmGBP Periplasmic 25.5 57 0.0015 14.8 11.1 129 7-154 2-148 (271) 310 PRK07024 short chain dehydroge 25.5 58 0.0015 14.7 6.5 65 4-70 1-88 (256) 311 PRK01185 ppnK inorganic polyph 25.4 48 0.0012 15.3 2.0 79 6-91 2-82 (272) 312 TIGR01457 HAD-SF-IIA-hyp2 HAD- 25.4 57 0.0014 14.8 2.3 57 81-140 143-199 (251) 313 TIGR03260 met_CoM_red_D methyl 25.4 58 0.0015 14.7 2.7 55 3-57 69-124 (150) 314 TIGR01212 TIGR01212 radical SA 25.4 58 0.0015 14.7 2.7 34 31-64 107-143 (307) 315 LOAD_USPA consensus 25.4 58 0.0015 14.7 5.4 58 19-80 61-118 (135) 316 cd06274 PBP1_FruR Ligand bindi 25.3 58 0.0015 14.7 11.1 77 7-88 2-84 (264) 317 TIGR03470 HpnH hopanoid biosyn 25.2 58 0.0015 14.7 7.8 68 19-91 60-130 (318) 318 COG1744 Med Uncharacterized AB 25.1 58 0.0015 14.7 6.5 92 3-95 160-256 (345) 319 TIGR03567 FMN_reduc_SsuE FMN r 25.0 59 0.0015 14.7 10.8 135 6-154 1-170 (171) 320 cd01471 vWA_micronemal_protein 24.9 59 0.0015 14.7 5.5 16 18-33 20-36 (186) 321 cd03058 GST_N_Tau GST_N family 24.9 59 0.0015 14.7 4.0 36 15-50 7-42 (74) 322 PRK08415 enoyl-(acyl carrier p 24.7 59 0.0015 14.7 7.0 70 1-70 1-94 (274) 323 TIGR01963 PHB_DH 3-hydroxybuty 24.6 60 0.0015 14.6 7.5 62 5-70 1-62 (258) 324 PTZ00249 variable surface prot 24.5 37 0.00096 16.0 1.3 41 67-116 424-464 (516) 325 cd00293 USP_Like Usp: Universa 24.4 60 0.0015 14.6 4.7 40 30-73 68-107 (130) 326 cd02520 Glucosylceramide_synth 24.3 60 0.0015 14.6 6.5 108 5-115 1-120 (196) 327 PRK13140 consensus 24.1 61 0.0016 14.6 5.2 55 15-72 125-182 (257) 328 COG1419 FlhF Flagellar GTP-bin 24.0 61 0.0016 14.6 7.2 131 2-139 231-399 (407) 329 cd00887 MoeA MoeA family. Memb 23.9 62 0.0016 14.6 4.5 76 3-80 167-259 (394) 330 PRK12331 oxaloacetate decarbox 23.7 62 0.0016 14.5 8.0 150 6-156 111-277 (463) 331 PRK06703 flavodoxin; Provision 23.5 63 0.0016 14.5 4.6 126 5-159 2-150 (151) 332 PRK12429 3-hydroxybutyrate deh 23.5 63 0.0016 14.5 8.0 66 4-70 3-92 (258) 333 PRK08278 short chain dehydroge 23.4 63 0.0016 14.5 8.4 68 1-70 2-101 (273) 334 TIGR00303 TIGR00303 conserved 23.3 63 0.0016 14.5 2.4 73 23-106 161-255 (350) 335 cd06448 L-Ser-dehyd Serine deh 23.3 63 0.0016 14.5 3.3 103 38-147 136-254 (316) 336 pfam09752 DUF2048 Uncharacteri 23.2 63 0.0016 14.5 4.1 113 5-133 91-231 (337) 337 PRK05876 short chain dehydroge 23.2 63 0.0016 14.5 7.0 69 3-72 4-96 (275) 338 PRK03378 ppnK inorganic polyph 23.1 64 0.0016 14.5 3.4 83 5-90 6-95 (292) 339 PRK13305 sgbH 3-keto-L-gulonat 23.1 64 0.0016 14.5 10.3 66 5-76 81-146 (220) 340 cd04730 NPD_like 2-Nitropropan 22.8 65 0.0016 14.4 7.2 50 4-66 80-129 (236) 341 cd01481 vWA_collagen_alpha3-VI 22.8 65 0.0016 14.4 5.5 18 39-56 56-73 (165) 342 TIGR00600 rad2 DNA excision re 22.8 56 0.0014 14.8 1.9 18 19-36 859-876 (1127) 343 PRK07806 short chain dehydroge 22.8 65 0.0017 14.4 8.4 29 2-32 3-31 (248) 344 TIGR00511 aIF-2BII_fam transla 22.6 62 0.0016 14.6 2.1 39 20-69 156-194 (303) 345 cd03060 GST_N_Omega_like GST_N 22.3 66 0.0017 14.4 3.9 37 15-51 7-43 (71) 346 TIGR02539 SepCysS Sep-tRNA:Cys 22.3 66 0.0017 14.4 3.9 129 4-155 148-287 (381) 347 PRK04759 consensus 22.2 66 0.0017 14.3 3.6 86 1-90 1-96 (294) 348 PRK05333 NAD-dependent deacety 22.1 67 0.0017 14.3 3.0 24 46-72 10-33 (285) 349 PRK12748 3-ketoacyl-(acyl-carr 21.9 67 0.0017 14.3 7.9 71 1-71 1-107 (257) 350 cd06280 PBP1_LacI_like_4 Ligan 21.9 67 0.0017 14.3 12.8 127 7-155 2-143 (263) 351 PRK08285 cobH precorrin-8X met 21.9 67 0.0017 14.3 4.2 46 83-133 155-200 (208) 352 cd00644 HMG-CoA_reductase_clas 21.7 41 0.001 15.7 1.0 40 100-142 305-345 (417) 353 PRK11889 flhF flagellar biosyn 21.3 69 0.0018 14.2 7.8 66 5-75 270-337 (436) 354 COG0589 UspA Universal stress 21.3 69 0.0018 14.2 7.7 72 17-91 73-153 (154) 355 PRK10329 glutaredoxin-like pro 21.3 69 0.0018 14.2 5.7 44 9-55 3-46 (81) 356 PRK12744 short chain dehydroge 20.9 71 0.0018 14.2 8.6 67 2-71 5-101 (257) 357 PRK06505 enoyl-(acyl carrier p 20.8 71 0.0018 14.2 7.5 31 3-33 5-35 (271) 358 cd06298 PBP1_CcpA_like Ligand- 20.7 71 0.0018 14.1 10.7 78 7-88 2-84 (268) 359 TIGR02181 GRX_bact glutaredoxi 20.6 72 0.0018 14.1 4.0 52 12-65 4-59 (82) 360 cd04336 YeaK YeaK is an unchar 20.5 72 0.0018 14.1 3.8 41 21-61 2-42 (153) 361 smart00493 TOPRIM topoisomeras 20.4 72 0.0018 14.1 4.9 56 6-68 1-56 (76) 362 PRK06947 glucose-1-dehydrogena 20.3 72 0.0018 14.1 8.4 54 16-70 40-95 (252) 363 KOG1478 consensus 20.1 73 0.0019 14.1 6.1 53 3-56 1-53 (341) 364 TIGR01316 gltA glutamate synth 20.1 73 0.0019 14.1 4.8 49 16-70 191-242 (462) 365 pfam02350 Epimerase_2 UDP-N-ac 20.0 74 0.0019 14.1 5.3 80 6-88 11-97 (346) No 1 >TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex. Probab=100.00 E-value=0 Score=450.22 Aligned_cols=158 Identities=58% Similarity=0.928 Sum_probs=156.3 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCHHHHHHHCCCCE Q ss_conf 999958816989999999999980998265453010387999988987653598-2999972676685113465224203 Q gi|254780157|r 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF-KLIIAGAGGAAHLPGMIAAMTSLPV 85 (165) Q Consensus 7 V~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~-~viIa~AG~aaaLpgvva~~t~~PV 85 (165) |+|||||+|||++|+++.++|++|||+||++|.||||||+++++|+++++++|+ +||||+||+||||||+||++|++|| T Consensus 1 V~iIMGS~SD~~~m~~a~~~L~~fgi~~e~~V~SAHRTP~~~~~ya~~a~~~G~P~ViIAgAGgaAHLPGmvAa~T~~PV 80 (159) T TIGR01162 1 VGIIMGSDSDLETMKKAAEILEEFGIPYELRVVSAHRTPELMFEYAKEAEERGIPKVIIAGAGGAAHLPGMVAALTTLPV 80 (159) T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCE T ss_conf 96853672547899999999985599667898606778088999999998678997998403511334010011478775 Q ss_pred EEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 6612577666750016998403569862044316753122899999997069999999999999999999984054067 Q gi|254780157|r 86 LGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDIP 164 (165) Q Consensus 86 IgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v~~~~~~l~ 164 (165) ||||+.+..++|+|||||+||||+|+||+||++|++||.||||||+||||++|++|++||++||++++++|.+++++|+ T Consensus 81 IGVPv~~~~l~G~DSLlSiVQMP~GvPVATvaig~aGA~NAAllAa~ILa~~~~~l~~kl~~~~~~~~~~V~~~~~~l~ 159 (159) T TIGR01162 81 IGVPVPSKALSGLDSLLSIVQMPAGVPVATVAIGNAGAKNAALLAAQILAIKDPELAEKLKEYRENQKEKVLKKNEELE 159 (159) T ss_pred EECCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 5034773424521354454307589746530037132788999999997268988999999999999999873010259 No 2 >COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Probab=100.00 E-value=0 Score=394.20 Aligned_cols=159 Identities=58% Similarity=0.952 Sum_probs=154.7 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC Q ss_conf 87499995881698999999999998099826545301038799998898765359829999726766851134652242 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL 83 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~ 83 (165) .|+|+|||||+|||++|++++++|++|||+|+.+|.||||||+++.+|+++++++|++|||++||++|||||++|++|++ T Consensus 2 ~~~V~IIMGS~SD~~~mk~Aa~~L~~fgv~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~l 81 (162) T COG0041 2 PPKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPL 81 (162) T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCHHHHHCCCC T ss_conf 85189995570239999999999998499759999844679899999999998789759996575111062026555879 Q ss_pred CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 03661257766675001699840356986204431675312289999999706999999999999999999998405406 Q gi|254780157|r 84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 (165) Q Consensus 84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v~~~~~~l 163 (165) ||||||+.+..|+|+|||||++|||+|+||+|++||.+ .|||++|+|||+++|+++++||.+||++++++|.++++++ T Consensus 82 PViGVPv~s~~L~GlDSL~SiVQMP~GiPVaTvaIg~a--~NAallAa~iLa~~d~~l~~kl~~~r~~~~~~V~~~~~~~ 159 (162) T COG0041 82 PVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNA--ANAALLAAQILAIKDPELAEKLAEFREAQTEEVLEDDEEL 159 (162) T ss_pred CEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 86741476233466487788721899973688760613--3189999999837998899999999999999998470644 Q ss_pred C Q ss_conf 7 Q gi|254780157|r 164 P 164 (165) Q Consensus 164 ~ 164 (165) + T Consensus 160 ~ 160 (162) T COG0041 160 E 160 (162) T ss_pred H T ss_conf 1 No 3 >pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain. Probab=100.00 E-value=0 Score=389.59 Aligned_cols=150 Identities=61% Similarity=0.989 Sum_probs=146.8 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCC Q ss_conf 74999958816989999999999980998265453010387999988987653598299997267668511346522420 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLP 84 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~P 84 (165) |||+|+|||+||+++|+++.++|++|||+|+++|+||||+|+++.+|.+++++++++|||++|||++|||||++++|++| T Consensus 1 ~~V~IimGS~SD~~~~~~a~~~L~~~gi~~e~~V~SAHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpGvvA~~T~~P 80 (150) T pfam00731 1 PKVGIIMGSDSDLPTMEKAAKVLKEFGIPYEVRVVSAHRTPERLFEYAKEAEARGIKVIIAGAGGAAHLPGMVAALTTLP 80 (150) T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCC T ss_conf 94999957673099999999999985997698676510387899999999997597399995684201200017647996 Q ss_pred EEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 366125776667500169984035698620443167531228999999970699999999999999999999 Q gi|254780157|r 85 VLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISI 156 (165) Q Consensus 85 VIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v 156 (165) |||||+++++++|+|+|||++|||+|+||+||++| |++|||++|+|||+++|+++++||++||+++++++ T Consensus 81 VIgVP~~~~~l~G~dsllS~vqMP~Gvpvatv~i~--~~~NAallA~~Il~~~d~~~~~kl~~~r~~~~~~v 150 (150) T pfam00731 81 VIGVPVKSKALGGLDSLLSIVQMPSGIPVATVAIG--GAKNAALLAAQILALKDPELAEKLEAYREELAEEV 150 (150) T ss_pred EEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC T ss_conf 68577787777545459999619999976898658--66669999999983699999999999999976259 No 4 >COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only] Probab=99.95 E-value=4.8e-28 Score=203.12 Aligned_cols=123 Identities=30% Similarity=0.497 Sum_probs=108.8 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCC----EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC Q ss_conf 4999958816989999999999980998----265453010387999988987653598299997267668511346522 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGID----YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT 81 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~----~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t 81 (165) +|+|+..++||+|++|||..+++.+|++ |++.|++.||....+.+. +.++.+++|++|||+++||+||++++ T Consensus 119 ~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~----~~~~~~~lIVvAGMEGaLPsvvagLv 194 (254) T COG1691 119 KVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRL----KIEDADVLIVVAGMEGALPSVVAGLV 194 (254) T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHH----HHHCCCEEEEECCCCCCHHHHHHHCC T ss_conf 69999457877626889999999829567899961230277651588988----75079869998366663078887513 Q ss_pred CCCEEEECCCCCC---CCCCCCHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHHHC Q ss_conf 4203661257766---675001699840-356986204431675312289999999706 Q gi|254780157|r 82 SLPVLGVPIISQT---LGGIDSLLSIVQ-MPAGVPVGTMAIGQSGAINASLLAVAILAL 136 (165) Q Consensus 82 ~~PVIgVP~~~~~---~~G~dallS~vq-MP~Gvpvatv~vg~~~~~NAal~A~~Il~~ 136 (165) +.||||||++.|| ++|+.+||+|+| |-+|+.| ||+||+|+||.+|+||+-. T Consensus 195 D~PVIavPTsVGYG~g~gGiaaLltMLqSCspGv~V----VNIdNGfGAa~~A~~I~r~ 249 (254) T COG1691 195 DVPVIAVPTSVGYGAGGGGIAALLTMLQSCSPGVGV----VNIDNGFGAAVLAVQILRR 249 (254) T ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHHHHH T ss_conf 787672455643376876588999999735887189----9816745799999999999 No 5 >KOG2835 consensus Probab=99.92 E-value=4e-26 Score=190.66 Aligned_cols=158 Identities=34% Similarity=0.460 Sum_probs=152.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 88749999588169899999999999809982654530103879999889876535982999972676685113465224 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) .+|.+.++|++++|.++|...+.+++.|+++++..+.++||+|.++..|...+..+++.++|++||.++|+|+.|++.+. T Consensus 207 v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~ 286 (373) T KOG2835 207 VIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFE 286 (373) T ss_pred CCCHHHEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCC T ss_conf 35312347700677664430067845657775115888403770466665402566618999516777777256776463 Q ss_pred CCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 20366125776667500169984035698620443167531228999999970699999999999999999999840540 Q gi|254780157|r 83 LPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKD 162 (165) Q Consensus 83 ~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v~~~~~~ 162 (165) .| |||.....++|.|++||+||||.|+|++|+++ .++.|||++|++||+++|+.|+.|+..|+.+++..+.+.+++ T Consensus 287 ~~--gvp~~~~~~dg~~~~l~~V~~~~~~~~~~v~v--~~p~~aa~~aar~l~~~~~~i~gk~~~~~l~~~~~~~~~~~K 362 (373) T KOG2835 287 RP--GVPVVFVAVDGRDNLLSIVQMPNGVPVATVAV--NNPENAALLAARILGLSNEMITGKMRSYQLNQQIIILNKDRK 362 (373) T ss_pred CC--CCCEEEEECCCCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 66--85233211155334445033367764455466--897899999999997531676887887411222788877656 Q ss_pred CC Q ss_conf 67 Q gi|254780157|r 163 IP 164 (165) Q Consensus 163 l~ 164 (165) |+ T Consensus 363 le 364 (373) T KOG2835 363 LE 364 (373) T ss_pred HH T ss_conf 76 No 6 >PRK09423 gldA glycerol dehydrogenase; Provisional Probab=97.41 E-value=0.0016 Score=44.24 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=74.3 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-HHHHHHHCCC Q ss_conf 749999588169899999999999809982654530103879999889876535982999972676685-1134652242 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL-PGMIAAMTSL 83 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL-pgvva~~t~~ 83 (165) .|+.|+.|..+=....++....|++.||++.....+..-+.+.+.+..+.+...+++++|++-|++.-- +-.++-.... T Consensus 30 ~r~liVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~pt~~~v~~~~~~~~~~~~D~IiavGGGS~iD~AKaia~~~~~ 109 (366) T PRK09423 30 KRALLIADEFVLGIVGDTVEASLKDAGLDVVFEVFNGECSDNEIDRLVAIAEENGCDVIIGIGGGKTLDTAKAVADYLGV 109 (366) T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCC T ss_conf 95899989528998999999999867986999733899999999999999986499989993783887779999998289 Q ss_pred CEEEECCCCCC Q ss_conf 03661257766 Q gi|254780157|r 84 PVLGVPIISQT 94 (165) Q Consensus 84 PVIgVP~~~~~ 94 (165) |+|.||+..+. T Consensus 110 P~i~IPTtAgT 120 (366) T PRK09423 110 PVVIVPTIAST 120 (366) T ss_pred CEEEECCCCCC T ss_conf 97995686667 No 7 >pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase. Probab=97.11 E-value=0.005 Score=41.08 Aligned_cols=90 Identities=24% Similarity=0.329 Sum_probs=71.2 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC- Q ss_conf 7499995881-698999999999998099826545-3010387999988987653598299997267668511346522- Q gi|254780157|r 5 PPVAIIMGSQ-SDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT- 81 (165) Q Consensus 5 pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t- 81 (165) .||.|+.|.. ......++..+.|++.|+++.++- ...|-+.+.+.+.++.+...+++++|++-|++..-.+=..+.. T Consensus 23 ~r~llVt~~~~~~~g~~~~l~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~ 102 (312) T pfam00465 23 ARALIVTDPSLKKLGLLDRVLDSLEEAGIEVVVFDGVEPNPTLEEVDEAAAAAREEGADVIIAVGGGSVIDTAKAIALLL 102 (312) T ss_pred CEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH T ss_conf 97999989585667639999999997499499985827999999999999999964998999808976124999999997 Q ss_pred ------------------CCCEEEECCCCCC Q ss_conf ------------------4203661257766 Q gi|254780157|r 82 ------------------SLPVLGVPIISQT 94 (165) Q Consensus 82 ------------------~~PVIgVP~~~~~ 94 (165) ..|+|.||+-.+. T Consensus 103 ~~~~~~~~~~~~~~~~~~~~P~i~IPTTagT 133 (312) T pfam00465 103 TNPGDVWDYLGGKKLTKPALPLIAIPTTAGT 133 (312) T ss_pred CCCCCHHHHHCCCCCCCCCCCEEEEECCCCC T ss_conf 1999889985576555678988997178667 No 8 >PRK13054 lipid kinase; Reviewed Probab=96.76 E-value=0.021 Score=37.07 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=65.4 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 99887499995881698999999999998099826545301038799998898765359829999726766851134652 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) |+|+.-..|+=|..+--...+++...|++.|++++++.... +....++++++..++++.+| ++|+.+.+.-|+.++ T Consensus 1 ~~~~k~lli~N~~~~g~~~~~~~~~~l~~~~~~~~~~~T~~---~gda~~la~~a~~~g~d~vv-~~GGDGTv~evvngl 76 (299) T PRK13054 1 MEFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWE---KGDAARYVEEALALGVATVI-AGGGDGTLNEVATAL 76 (299) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCC---CCHHHHHHHHHHHCCCCEEE-EECCCHHHHHHHHHH T ss_conf 99856999981700050689999999997698799996489---74599999999877998999-987722999999999 Q ss_pred CC-----CCEEEECCCC Q ss_conf 24-----2036612577 Q gi|254780157|r 81 TS-----LPVLGVPIIS 92 (165) Q Consensus 81 t~-----~PVIgVP~~~ 92 (165) .. .|.+|+=|.+ T Consensus 77 ~~~~~~~~~~LgiiP~G 93 (299) T PRK13054 77 AQLEGDDRPSLGILPLG 93 (299) T ss_pred HHCCCCCCCEEEEECCC T ss_conf 74788778639996387 No 9 >PRK13337 putative lipid kinase; Reviewed Probab=96.64 E-value=0.03 Score=35.97 Aligned_cols=86 Identities=23% Similarity=0.322 Sum_probs=65.8 Q ss_pred CCCEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH Q ss_conf 887499995----8816989999999999980998265453010387999988987653598299997267668511346 Q gi|254780157|r 3 IAPPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA 78 (165) Q Consensus 3 ~~pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva 78 (165) |.+|+.+|. |+..-....+++.+.|++.|+++++... ..+....++++.+..++++.+| ++|+.+.+--|+. T Consensus 1 mmkr~~~I~NP~sG~g~~~~~~~~i~~~l~~~g~~~~~~~T---~~~g~a~~~a~~~~~~~~d~vv-~~GGDGTv~evvn 76 (305) T PRK13337 1 MMKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHAT---TGPGDATLAARQAAERNFDLVI-AAGGDGTLNEVVN 76 (305) T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE---CCHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHH T ss_conf 98459999997568864677899999999987996999982---7802899999998777999899-9957628999999 Q ss_pred HHCC---CCEEEECCCC Q ss_conf 5224---2036612577 Q gi|254780157|r 79 AMTS---LPVLGVPIIS 92 (165) Q Consensus 79 ~~t~---~PVIgVP~~~ 92 (165) ++.. .|.+|+=|.+ T Consensus 77 gl~~~~~~~~lgiiP~G 93 (305) T PRK13337 77 GLAEKENRPKLGIIPVG 93 (305) T ss_pred HHHCCCCCCEEEEEECC T ss_conf 98558998628997078 No 10 >PRK13055 putative lipid kinase; Reviewed Probab=96.26 E-value=0.077 Score=33.36 Aligned_cols=87 Identities=22% Similarity=0.327 Sum_probs=62.1 Q ss_pred CCCEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH Q ss_conf 887499995----8816989999999999980998265453010387999988987653598299997267668511346 Q gi|254780157|r 3 IAPPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA 78 (165) Q Consensus 3 ~~pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva 78 (165) |+.|+.+|. |..+-.....++...|++.|+++.+.-... -++...++.+.+..++++++| ++|+.+.+.-|+. T Consensus 1 MmKr~~lIvNP~SG~g~~~~~~~~i~~~L~~~g~e~~~~~tt~--~~~~a~~~a~~a~~~g~d~Iv-a~GGDGTinevvn 77 (334) T PRK13055 1 MQKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTP--EPNSAKNEARRAAKAGFDLII-AAGGDGTINEVVN 77 (334) T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEC--CCCHHHHHHHHHHHCCCCEEE-EECCCCHHHHHHH T ss_conf 9706999999877897578899999999998698599999441--785799999987657998999-9877608999999 Q ss_pred HHC---CCCEEEECCCC Q ss_conf 522---42036612577 Q gi|254780157|r 79 AMT---SLPVLGVPIIS 92 (165) Q Consensus 79 ~~t---~~PVIgVP~~~ 92 (165) ++. ..|.+|+=|.+ T Consensus 78 gl~~~~~~~~LgiIP~G 94 (334) T PRK13055 78 GIAPLEKRPKMAIIPAG 94 (334) T ss_pred HHHCCCCCCEEEEEECC T ss_conf 87346999718998077 No 11 >PRK10624 L-1,2-propanediol oxidoreductase; Provisional Probab=96.16 E-value=0.045 Score=34.86 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=68.0 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--- Q ss_conf 7499995881-69899999999999809982654-530103879999889876535982999972676685113465--- Q gi|254780157|r 5 PPVAIIMGSQ-SDWKIMKYAADMLDTLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--- 79 (165) Q Consensus 5 pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--- 79 (165) .++.|+.|+. ......++..+.|++.||++.++ =...+-+.+.+.+-++.+.+.+++.+|++-|+|.--..=..+ T Consensus 30 k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r~~~~D~IiavGGGSviD~AKaia~~~ 109 (381) T PRK10624 30 HKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQASGADYLIAIGGGSPQDTCKAIGIIS 109 (381) T ss_pred CEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 87999969654556369999999987698399988925898999999999999864999899808940888999999997 Q ss_pred ------------------HCCCCEEEECCCCCC Q ss_conf ------------------224203661257766 Q gi|254780157|r 80 ------------------MTSLPVLGVPIISQT 94 (165) Q Consensus 80 ------------------~t~~PVIgVP~~~~~ 94 (165) .-.+|+|.+|+-.|+ T Consensus 110 ~~~~~~~~~~~~g~~~~~~~~lP~iaIPTTaGT 142 (381) T PRK10624 110 NNPEFADVRSLEGLAPTKKPSVPIIAIPTTAGT 142 (381) T ss_pred CCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCC T ss_conf 098511478752656555788888997489767 No 12 >PRK09860 putative alcohol dehydrogenase; Provisional Probab=96.03 E-value=0.06 Score=34.05 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=67.9 Q ss_pred CEEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--- Q ss_conf 749999588-169899999999999809982654-530103879999889876535982999972676685113465--- Q gi|254780157|r 5 PPVAIIMGS-QSDWKIMKYAADMLDTLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--- 79 (165) Q Consensus 5 pkV~Ii~GS-~SD~~~~~~a~~~L~~~gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--- 79 (165) .+|.|+.|+ -....+.++..+.|++.||.+.++ =...+-+.+.+.+-++.+...+++++|++-|+|.--..=..+ T Consensus 32 k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~D~ivavGGGS~iD~AKaia~~~ 111 (383) T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVA 111 (383) T ss_pred CEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 87999828456657469999999987699589968952796999999999999873999999938962267899999998 Q ss_pred ----------------HCCCCEEEECCCCCC Q ss_conf ----------------224203661257766 Q gi|254780157|r 80 ----------------MTSLPVLGVPIISQT 94 (165) Q Consensus 80 ----------------~t~~PVIgVP~~~~~ 94 (165) .-.+|+|.||+-.|. T Consensus 112 ~~~~~~~d~~g~~~~~~~~lP~iaIPTTaGT 142 (383) T PRK09860 112 ANGGDIRDYEGVDRSAKPQLPMIAINTTAGT 142 (383) T ss_pred HCCCCHHHHHCCCCCCCCCCCEEEECCCCCC T ss_conf 0899889973667556888988987399845 No 13 >PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed Probab=95.61 E-value=0.1 Score=32.51 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=70.0 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCHHHHHHHCC Q ss_conf 8749999588169899999999999809982654530103879999889876535982999972676-685113465224 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA-AHLPGMIAAMTS 82 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~a-aaLpgvva~~t~ 82 (165) ..++.||.|...---..++....|++-|++.... ..-+-+.+.+.++.+.....+++++|++-|+. .-+...++-+.. T Consensus 34 ~~k~lII~d~~v~~~~g~~v~~sL~~~g~~v~~~-~~~e~s~~~i~~l~~~~~~~~~d~vi~~GgG~~~D~~k~~a~~~~ 112 (351) T PRK00843 34 KGNALIVTGPTTKEIAGKKVEDSLKDAGFEVDVV-IVKDATMEEVEKVEEKARDSGAGFLIGVGGGSSIDVAKLASTRLG 112 (351) T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCC T ss_conf 9958999895278999999999998669859999-379999999999999998459998999565168489999999829 Q ss_pred CCEEEECCCCC Q ss_conf 20366125776 Q gi|254780157|r 83 LPVLGVPIISQ 93 (165) Q Consensus 83 ~PVIgVP~~~~ 93 (165) +|+|-||+..+ T Consensus 113 ~p~i~vpT~as 123 (351) T PRK00843 113 IPFISVPTAAS 123 (351) T ss_pred CCEEEECCCCC T ss_conf 99899527210 No 14 >COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] Probab=95.45 E-value=0.15 Score=31.46 Aligned_cols=90 Identities=26% Similarity=0.313 Sum_probs=69.3 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH-HHHHHC Q ss_conf 7499995881-698999999999998099826545-3010387999988987653598299997267668511-346522 Q gi|254780157|r 5 PPVAIIMGSQ-SDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG-MIAAMT 81 (165) Q Consensus 5 pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpg-vva~~t 81 (165) .|+.|+.+.. ......++..+.|+.-||+|.++- ...+-+-+.+.+-.+.+++.+++.+|+.-|+|..-.. .++-++ T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~ 109 (377) T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA 109 (377) T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 71599979863110669999999874498289956889999888999999999816999899977930878999999996 Q ss_pred C------------------CCEEEECCCCCC Q ss_conf 4------------------203661257766 Q gi|254780157|r 82 S------------------LPVLGVPIISQT 94 (165) Q Consensus 82 ~------------------~PVIgVP~~~~~ 94 (165) . .|.|++|+-.|. T Consensus 110 ~~~~~~~~~~~i~~~~~~~~plIaIPTTaGT 140 (377) T COG1454 110 ENPGSVLDYEGIGKVKKPKAPLIAIPTTAGT 140 (377) T ss_pred HCCCHHHHHCCCCCCCCCCCCEEEECCCCCC T ss_conf 0874066640556666789987982699863 No 15 >pfam01761 DHQ_synthase 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Probab=95.37 E-value=0.3 Score=29.56 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=69.4 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE---HHCCHHHHHHHHHHHHHCCC---EEEEEEECCCC-CCHHH Q ss_conf 8749999588169899999999999809982654530---10387999988987653598---29999726766-85113 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIIS---AHRTPDRLIEFAKNARFEGF---KLIIAGAGGAA-HLPGM 76 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~S---AHR~p~~l~~~~~~~~~~~~---~viIa~AG~aa-aLpgv 76 (165) ..++.|+++..-+.-+.++....|+..|++++..+.. .+++.+.+.++.+.+...+. +++|++-|+.. -+.+. T Consensus 19 ~~~~~iv~D~~v~~~~~~~i~~~L~~~~~~~~~~~~~~gE~~k~~~~~~~i~~~l~~~~~~r~d~iiaiGGG~v~D~ak~ 98 (310) T pfam01761 19 GRRLVVVTDENVAKLYGEKLEELLKAAGFEVEVVVIPDGETYKTLETVARIYDALLEKGLTRSDVIIALGGGVIGDLAGF 98 (310) T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH T ss_conf 98299998976799999999999987799579999569865489999999999999749997754999549621168999 Q ss_pred HHH--HCCCCEEEECCC Q ss_conf 465--224203661257 Q gi|254780157|r 77 IAA--MTSLPVLGVPII 91 (165) Q Consensus 77 va~--~t~~PVIgVP~~ 91 (165) +|+ .--.|+|-||+. T Consensus 99 ~A~~~~rg~~~i~iPTt 115 (310) T pfam01761 99 AAATYMRGIPFIQVPTT 115 (310) T ss_pred HHHHHHCCCCEEEECCH T ss_conf 99999769977986708 No 16 >COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion] Probab=95.22 E-value=0.074 Score=33.48 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=75.8 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-HHHHHHHCCC Q ss_conf 749999588169899999999999809982654530103879999889876535982999972676685-1134652242 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL-PGMIAAMTSL 83 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL-pgvva~~t~~ 83 (165) .++.|+.|-.+---..++..+.|+..|+ ....+...+-+-+.+.+..+.....+.+++|++-|+...- .=++|....+ T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~ 109 (360) T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL 109 (360) T ss_pred CCEEEEECHHHHHHHHHHHHHHHCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCC T ss_conf 8639998815999999899997503586-226765486777799999987044799989995681899999999998199 Q ss_pred CEEEECCCCCCCCCCCCH-HHHHH Q ss_conf 036612577666750016-99840 Q gi|254780157|r 84 PVLGVPIISQTLGGIDSL-LSIVQ 106 (165) Q Consensus 84 PVIgVP~~~~~~~G~dal-lS~vq 106 (165) |+|.||+..+. +|.-|= +|... T Consensus 110 pfIsvPT~AS~-Da~~Sp~aSv~~ 132 (360) T COG0371 110 PFISVPTIAST-DAITSPVASVIY 132 (360) T ss_pred CEEECCCCCCC-CCCCCCCEEEEE T ss_conf 97980576444-555688634687 No 17 >pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. Probab=95.13 E-value=0.16 Score=31.39 Aligned_cols=111 Identities=20% Similarity=0.320 Sum_probs=72.4 Q ss_pred HHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHC Q ss_conf 98099826545301038799998898765359829999726766851134652242036612577666750016998403 Q gi|254780157|r 28 DTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQM 107 (165) Q Consensus 28 ~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vqM 107 (165) .+|. ..++.|..+ +.++..+.++.+..+|++|||+--|.+.. +-.+++.|||.+|+++ ++=+.+|.-.-+. T Consensus 4 ~~~~-~~~i~v~~~--~l~~av~~a~~~~~~g~dvIIsRGgta~~----ir~~~~iPVv~I~~s~--~Dil~al~~a~~~ 74 (169) T pfam06506 4 PEYA-DADVEVVDG--GLEDAVEVARALVAEGVDVIISRGGTAAY----LRDRLSVPVVEIKVSG--FDLLRALARARRY 74 (169) T ss_pred HHCC-CCEEEEEEC--CHHHHHHHHHHHHHCCCCEEEECCHHHHH----HHHHCCCCEEEEECCH--HHHHHHHHHHHHH T ss_conf 1157-772799977--78999999999997799599989658999----9985899889982788--6999999999975 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHC--------CCHHHHHHHHHHHHH Q ss_conf 56986204431675312289999999706--------999999999999999 Q gi|254780157|r 108 PAGVPVGTMAIGQSGAINASLLAVAILAL--------DDKELTDRLNEWRTQ 151 (165) Q Consensus 108 P~Gvpvatv~vg~~~~~NAal~A~~Il~~--------~d~~i~~kl~~~r~~ 151 (165) .+- ++. +|-.+-....-.-.++|++ +.+++++.+++.+++ T Consensus 75 ~~k--iav--vg~~~~~~~~~~~~~il~~~i~~~~~~~~~e~~~~i~~l~~~ 122 (169) T pfam06506 75 GGR--IGL--VGYENIIPGLKALSELLGLDIVQRAYQSEEEARAAVKELKAQ 122 (169) T ss_pred CCC--EEE--EECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC T ss_conf 897--999--927630368999999969935999966889999999999986 No 18 >cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=94.14 E-value=0.6 Score=27.57 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=87.6 Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--H Q ss_conf 4999958816989---9999999999809982654530103879999889876535982999972676685113465--2 Q gi|254780157|r 6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--M 80 (165) Q Consensus 6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--~ 80 (165) ||+++.-+-++-- +.+.+.+.++++|..+.+.+.+....+++-.++++++..++++.+|....-..++...+.. . T Consensus 1 KIGvivp~i~npff~~~~~gie~~a~~~g~~~~v~~~~~~~d~~~q~~~i~~li~~~vDgIii~~~~~~~~~~~i~~a~~ 80 (271) T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQA 80 (271) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 98999489989899999999999999719976999807988999999999999974998899934784035999999997 Q ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC--------------CCHHHHHHHH Q ss_conf 24203661257766675001699840356986204431675312289999999706--------------9999999999 Q gi|254780157|r 81 TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILAL--------------DDKELTDRLN 146 (165) Q Consensus 81 t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~--------------~d~~i~~kl~ 146 (165) ...|||.+-... .+.| .+ |+.|| +.++..|++.|.- ......+|+. T Consensus 81 ~gIpvV~~d~~~---~~~~--------------~~--V~~dn-~~~g~~a~~~L~~~~~~~~~i~~~~g~~~~~~~~R~~ 140 (271) T cd06321 81 AGIVVVAVDVAA---EGAD--------------AT--VTTDN-VQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVA 140 (271) T ss_pred CCCEEEEEEECC---CCCC--------------CE--EEECH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH T ss_conf 499189986058---9987--------------28--99769-9999999987887528960799975998535999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780157|r 147 EWRTQQTI 154 (165) Q Consensus 147 ~~r~~~~~ 154 (165) -|++.+.+ T Consensus 141 G~~~~l~~ 148 (271) T cd06321 141 GCKAALAK 148 (271) T ss_pred HHHHHHHH T ss_conf 99999987 No 19 >PRK00861 putative lipid kinase; Reviewed Probab=93.80 E-value=0.7 Score=27.15 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=54.5 Q ss_pred CCCEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH Q ss_conf 887499995----8816989999999999980998265453010387999988987653598299997267668511346 Q gi|254780157|r 3 IAPPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA 78 (165) Q Consensus 3 ~~pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva 78 (165) |+.|+.+|. |+..-....+++...|+. ++++++.....-. ...++++++..+++++ |.++|+.+.+.-|+. T Consensus 1 M~kr~~~IvNP~aG~g~~~~~~~~i~~~l~~-~~~~~v~~T~~~~---~a~~la~~a~~~~~d~-vv~~GGDGTv~ev~~ 75 (296) T PRK00861 1 MTRSACLIFNPVAGQGNPEVDLALIRAILQP-EMDLDIYLTTPEI---GADALAQEAVERGAEL-IIASGGDGTISAVAG 75 (296) T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEECCCC---CHHHHHHHHHHCCCCE-EEEECCHHHHHHHHH T ss_conf 9707999998678998646579999999972-9968999957888---6999999998679989-999888189999997 Q ss_pred HHC--CCCEEEECCC Q ss_conf 522--4203661257 Q gi|254780157|r 79 AMT--SLPVLGVPII 91 (165) Q Consensus 79 ~~t--~~PVIgVP~~ 91 (165) ++. ..| +|+=|. T Consensus 76 gl~~~~~~-lgiiP~ 89 (296) T PRK00861 76 ALIGTDIP-LGIIPR 89 (296) T ss_pred HHCCCCCC-EEEEEC T ss_conf 53358961-699807 No 20 >cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Probab=93.22 E-value=0.87 Score=26.54 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=66.3 Q ss_pred EEEEEECCCCCHH--HH-HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-- Q ss_conf 4999958816989--99-999999998099826545301038799998898765359829999726766851134652-- Q gi|254780157|r 6 PVAIIMGSQSDWK--IM-KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-- 80 (165) Q Consensus 6 kV~Ii~GS~SD~~--~~-~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-- 80 (165) ||++++-+-+|-- .+ +.+.+..+++|.++++.+..+.-.+.+-.+.++++..+++++||...--+.++..++..- T Consensus 1 kIGv~~~~~~npF~~~~~~g~e~~a~e~g~~v~~~~~da~~D~~~Q~~~Ie~~I~qgvD~Iii~p~d~~~~~~~i~~A~~ 80 (303) T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ 80 (303) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 98999648899899999999999999859957999707878999999999999975999999946873348999999996 Q ss_pred CCCCEEEECCC Q ss_conf 24203661257 Q gi|254780157|r 81 TSLPVLGVPII 91 (165) Q Consensus 81 t~~PVIgVP~~ 91 (165) --.|||.+-.. T Consensus 81 agIPVI~~d~~ 91 (303) T cd01539 81 KNIPVIFFNRE 91 (303) T ss_pred CCCEEEEECCC T ss_conf 69849998787 No 21 >COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Probab=93.17 E-value=0.59 Score=27.64 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=63.9 Q ss_pred EEEEEE--CCCCCHHHHHHHHHHHHHCCC-CEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 499995--881698999999999998099-82654530103879999889876535982999972676685113465224 Q gi|254780157|r 6 PVAIIM--GSQSDWKIMKYAADMLDTLGI-DYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 6 kV~Ii~--GS~SD~~~~~~a~~~L~~~gI-~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) +|+|.. -..+=....+.+.+.|+++|. ..++.+-++|-++..+.++++....++.+++|++++-++. .+++...+ T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq--~~~s~~~~ 109 (322) T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQ--ALVSATKT 109 (322) T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHH--HHHHHCCC T ss_conf 6889985066559999997899998648667289962477885789999999614799679961778999--99984679 Q ss_pred CCEE Q ss_conf 2036 Q gi|254780157|r 83 LPVL 86 (165) Q Consensus 83 ~PVI 86 (165) .||+ T Consensus 110 iPVV 113 (322) T COG2984 110 IPVV 113 (322) T ss_pred CCEE T ss_conf 8879 No 22 >cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR. Probab=92.70 E-value=1 Score=26.07 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=63.6 Q ss_pred EEEEEECCCCC-H--HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC- Q ss_conf 49999588169-8--9999999999980998265453010387999988987653598299997267668511346522- Q gi|254780157|r 6 PVAIIMGSQSD-W--KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT- 81 (165) Q Consensus 6 kV~Ii~GS~SD-~--~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t- 81 (165) |+++++-+.+| + .+.+.+.+..+++|++ +.+..++-.+++-.+.++++..++++.||....-..++...+.-.. T Consensus 1 kIa~~~~~~~~~f~~~~~~G~~~~A~~~G~~--~~v~d~~~d~~~Q~~~i~~~i~~~vDgIii~p~d~~~~~~~l~~a~~ 78 (273) T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGD--LRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD 78 (273) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 9899971788979999999999999974998--99973999999999999999985999999946871444899999998 Q ss_pred -CCCEEEEC Q ss_conf -42036612 Q gi|254780157|r 82 -SLPVLGVP 89 (165) Q Consensus 82 -~~PVIgVP 89 (165) -.|||.+= T Consensus 79 aGIPVV~~d 87 (273) T cd06305 79 AGIPVVAFD 87 (273) T ss_pred CCCCEEEEC T ss_conf 599789981 No 23 >PRK11914 diacylglycerol kinase; Reviewed Probab=92.51 E-value=1.1 Score=25.91 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=60.7 Q ss_pred CCEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH Q ss_conf 87499995----88169899999999999809982654530103879999889876535982999972676685113465 Q gi|254780157|r 4 APPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA 79 (165) Q Consensus 4 ~pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~ 79 (165) ..||.||. |+..-....++....|++.|++++..... .+....++++++..++++.+|+ +|+.+.+--|+.+ T Consensus 6 m~kv~vIvNP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~t~---~~~~a~~la~~a~~~g~d~vv~-~GGDGTv~ev~~~ 81 (304) T PRK11914 6 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT---DAHHARHLVAAALAKGTDALVV-VGGDGVISNALQV 81 (304) T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHH T ss_conf 86699999977799856889999999999879909999327---8789999999888649969999-9562598898764 Q ss_pred H--CCCCEEEECCC Q ss_conf 2--24203661257 Q gi|254780157|r 80 M--TSLPVLGVPII 91 (165) Q Consensus 80 ~--t~~PVIgVP~~ 91 (165) + +..| +|+=|. T Consensus 82 l~~~~~p-lgiiP~ 94 (304) T PRK11914 82 LAGTDIP-LGIIPA 94 (304) T ss_pred HCCCCCE-EEEECC T ss_conf 1357860-899638 No 24 >COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Probab=91.96 E-value=1.3 Score=25.49 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=61.2 Q ss_pred EEEEECCCCCH---HHHHHHHHHHH-HCCCCEEEEEEEHHCCH-------HHHHHHHHHHHH-CCCEEEEEEECCCCCCH Q ss_conf 99995881698---99999999999-80998265453010387-------999988987653-59829999726766851 Q gi|254780157|r 7 VAIIMGSQSDW---KIMKYAADMLD-TLGIDYEARIISAHRTP-------DRLIEFAKNARF-EGFKLIIAGAGGAAHLP 74 (165) Q Consensus 7 V~Ii~GS~SD~---~~~~~a~~~L~-~~gI~~~~~V~SAHR~p-------~~l~~~~~~~~~-~~~~viIa~AG~aaaLp 74 (165) +..+-.. .|+ +..++..+.++ +.+=+|.+-..+ ++| .-.+|+....+. -..+-++++.|-.+..+ T Consensus 119 ~~~~~~~-~d~~~~~~~~~~~e~~~~~g~kpyvIp~gG--~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~A 195 (323) T COG2515 119 VRAVDAG-TDIGINASAEELAEEVRKQGGKPYVIPEGG--SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHA 195 (323) T ss_pred EEEECCC-CCHHHCHHHHHHHHHHHHCCCCCCEECCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH T ss_conf 7871588-886433106789999996179983722677--6855441288899999999963137777999678851089 Q ss_pred HHHHHHC----CCCEEEECCCCCCCCCCCCHHHHHH Q ss_conf 1346522----4203661257766675001699840 Q gi|254780157|r 75 GMIAAMT----SLPVLGVPIISQTLGGIDSLLSIVQ 106 (165) Q Consensus 75 gvva~~t----~~PVIgVP~~~~~~~G~dallS~vq 106 (165) |.++++. ..+|||||++...-.--.-++.+.| T Consensus 196 Gl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~l~~ 231 (323) T COG2515 196 GLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQ 231 (323) T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHH T ss_conf 999876510688846887604887998999999999 No 25 >cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally. Probab=91.50 E-value=1.4 Score=25.25 Aligned_cols=84 Identities=20% Similarity=0.124 Sum_probs=60.1 Q ss_pred EEEEEECC--CCCHHHHHHHHHHHHHCCC----CEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH Q ss_conf 49999588--1698999999999998099----82654530103879999889876535982999972676685113465 Q gi|254780157|r 6 PVAIIMGS--QSDWKIMKYAADMLDTLGI----DYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA 79 (165) Q Consensus 6 kV~Ii~GS--~SD~~~~~~a~~~L~~~gI----~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~ 79 (165) ||+|+--. .+=-+..+...+.|++.|. +.++.+-+|...+..+..+++++..+++++|++.+.-++. .+... T Consensus 1 ~igi~q~~~h~~ld~~~~Gf~~~L~~~G~~~g~nv~~~~~na~gd~~~l~~ia~~l~~~~~DlIva~gTpaaq--a~~~~ 78 (281) T cd06325 1 KVGILQLVEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFVADKPDLIVAIATPAAQ--AAANA 78 (281) T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHHHC T ss_conf 9389983376747999999999999649767983799996079999999999999985499999987709999--99962 Q ss_pred HCCCCEEEECCC Q ss_conf 224203661257 Q gi|254780157|r 80 MTSLPVLGVPII 91 (165) Q Consensus 80 ~t~~PVIgVP~~ 91 (165) .++.||+-+.+. T Consensus 79 ~~~iPIVF~~V~ 90 (281) T cd06325 79 TKDIPIVFTAVT 90 (281) T ss_pred CCCCCEEEEECC T ss_conf 799998999516 No 26 >PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional Probab=91.31 E-value=1.3 Score=25.42 Aligned_cols=74 Identities=19% Similarity=0.130 Sum_probs=55.5 Q ss_pred CCEEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH Q ss_conf 8749999588-1698999999999998099826545-301038799998898765359829999726766851134 Q gi|254780157|r 4 APPVAIIMGS-QSDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI 77 (165) Q Consensus 4 ~pkV~Ii~GS-~SD~~~~~~a~~~L~~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv 77 (165) ..|+.|+... -.++-+.++....|++-||+|+++- ..+--+.+.+.+=++.+...++++||++-|+|..-..=. T Consensus 482 ~kralIVTD~~~~~~G~vd~v~~~L~~~gi~~~vFd~V~pdPt~~~V~~G~~~~~~~~~D~IIalGGGS~iDaAKa 557 (862) T PRK13805 482 KKRAFIVTDRGMVELGYVDKVTDVLRANGVETEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKI 557 (862) T ss_pred CCEEEEECCHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH T ss_conf 9779998785187678899999999986983999669899939799999999998649999999478348899999 No 27 >PRK13059 putative lipid kinase; Reviewed Probab=90.90 E-value=1.6 Score=24.80 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=60.0 Q ss_pred CEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 7499995----881698999999999998099826545301038799998898765359829999726766851134652 Q gi|254780157|r 5 PPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 5 pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) +|+.+|. |+.+=....+++...|++.|++++..-.+... ......+.. ++++++ |.++|+.+.+--|+.++ T Consensus 2 kk~~~I~NP~sG~g~~~~~~~~i~~~l~~~~~~~~~~~t~~~~---~~~~a~~~~-~~~~d~-vv~~GGDGTinevvngl 76 (294) T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIEIHQKYGYLVVPYRISLGC---DLKEAFKDI-DESYKY-ILIAGGDGTVDNVVNAM 76 (294) T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC---HHHHHHHHH-HCCCCE-EEEEECCCHHHHHHHHH T ss_conf 7799999976688666889999999999779889999853560---899999988-748988-99995678899999999 Q ss_pred CC---CCEEEECCCCCCCCCCCCHHHHHHCCCC Q ss_conf 24---2036612577666750016998403569 Q gi|254780157|r 81 TS---LPVLGVPIISQTLGGIDSLLSIVQMPAG 110 (165) Q Consensus 81 t~---~PVIgVP~~~~~~~G~dallS~vqMP~G 110 (165) .. .+.+|+=|.+. |-| +-.++++|.. T Consensus 77 ~~~~~~~~lgiiP~GT---gNd-fAr~Lgip~~ 105 (294) T PRK13059 77 KKLNIDIPIGILPVGT---AND-FAKFIGMPTN 105 (294) T ss_pred HHCCCCCCEEEEECCC---CCH-HHHHCCCCCC T ss_conf 8569998579982677---507-8998299999 No 28 >COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] Probab=90.68 E-value=1.3 Score=25.42 Aligned_cols=72 Identities=26% Similarity=0.279 Sum_probs=50.5 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH-HCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCC Q ss_conf 879999889876535982999972676685113465-2242036612577666750016998403569862044316753 Q gi|254780157|r 44 TPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA-MTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSG 122 (165) Q Consensus 44 ~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~-~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~ 122 (165) |-+.....++++.++|.+ +|+.||+.+..--+..+ --..||+|+|.-... -+|++-- . T Consensus 85 Ta~DT~~~~r~~~~~gVd-lIvfaGGDGTarDVa~av~~~vPvLGipaGvk~-------------~SgvfA~-------~ 143 (355) T COG3199 85 TAEDTINAVRRMVERGVD-LIVFAGGDGTARDVAEAVGADVPVLGIPAGVKN-------------YSGVFAL-------S 143 (355) T ss_pred CHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHCCCCCCEEEECCCCCE-------------ECCCCCC-------C T ss_conf 379999999999865961-999957885299998532678866741356502-------------0352014-------8 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 12289999999706 Q gi|254780157|r 123 AINASLLAVAILAL 136 (165) Q Consensus 123 ~~NAal~A~~Il~~ 136 (165) +.-||.++.+.+-- T Consensus 144 P~~aa~l~~~~lkg 157 (355) T COG3199 144 PEDAARLLGAFLKG 157 (355) T ss_pred HHHHHHHHHHHHCC T ss_conf 27789999998534 No 29 >TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis. Probab=89.30 E-value=1.8 Score=24.56 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=55.6 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHH--HCCCEEEEEEECCCCCCHHHHHHH- Q ss_conf 7499995881-698999999999998099826545301038799998898765--359829999726766851134652- Q gi|254780157|r 5 PPVAIIMGSQ-SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNAR--FEGFKLIIAGAGGAAHLPGMIAAM- 80 (165) Q Consensus 5 pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~--~~~~~viIa~AG~aaaLpgvva~~- 80 (165) .|+.|+.+.. ....+.++....|+..++.+- .=...+-+.+.+.+-++.+. +.+++++|++-|+|.--..=..+. T Consensus 24 k~~llVt~~~~~~~g~~~~v~~~L~~~~~~vf-~~V~pnP~~~~v~~~~~~~~~~e~~~D~IiavGGGS~iD~AKaia~~ 102 (355) T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGRLAALI-DDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVG 102 (355) T ss_pred CEEEEEECCCHHHCCHHHHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH T ss_conf 84999979636554399999998189955999-27468949899999999998423699889980785187889999999 Q ss_pred ----------------------CCCCEEEECCCCCCC Q ss_conf ----------------------242036612577666 Q gi|254780157|r 81 ----------------------TSLPVLGVPIISQTL 95 (165) Q Consensus 81 ----------------------t~~PVIgVP~~~~~~ 95 (165) -.+|+|.||+-.|.. T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~lP~iaIPTTaGTG 139 (355) T TIGR03405 103 LRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTG 139 (355) T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC T ss_conf 7189758889887337767755789989843899754 No 30 >cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=88.77 E-value=2.4 Score=23.72 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=61.0 Q ss_pred EEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC- Q ss_conf 49999588169---89999999999980998265453010387999988987653598299997267668511346522- Q gi|254780157|r 6 PVAIIMGSQSD---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT- 81 (165) Q Consensus 6 kV~Ii~GS~SD---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t- 81 (165) |+++|..+.++ ..+.+.+.+..+++|+...+.-.+..-.+++-.+.++++..++++.||.......++...+.-.. T Consensus 1 kIg~i~~~~~npf~~~v~~G~e~aA~~~G~~v~~~~~~~~~d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~~~l~~a~~ 80 (273) T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD 80 (273) T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 98999599998599999999999999809989997289978999999999999974999999916871447999999998 Q ss_pred -CCCEEEE Q ss_conf -4203661 Q gi|254780157|r 82 -SLPVLGV 88 (165) Q Consensus 82 -~~PVIgV 88 (165) -.|||-+ T Consensus 81 ~gIPvV~~ 88 (273) T cd06310 81 AGIPVVLI 88 (273) T ss_pred CCCCEEEE T ss_conf 49985898 No 31 >pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins. Probab=88.41 E-value=2.5 Score=23.57 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=53.6 Q ss_pred HHHHHHHHHHHHCCCC---EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCC Q ss_conf 9999999999980998---2654530103879999889876535982999972676685113465224203661257 Q gi|254780157|r 18 KIMKYAADMLDTLGID---YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPII 91 (165) Q Consensus 18 ~~~~~a~~~L~~~gI~---~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~ 91 (165) ...+...+-|+++|+. ..+.+-+|...+.++..++++...+++++|++++.-++. .+....++.||+-+.+. T Consensus 15 ~~~~g~~~~L~~~G~~~~n~~~~~~na~gd~~~~~~ia~~l~~~~~Dli~a~~Tpaa~--a~~~~~~~iPIVf~~v~ 89 (292) T pfam04392 15 AIVDGIQEALKDFGYEPKNVLIKVKNAEGDPSKAAQIARQLVTDKNDLIIGIATPVAQ--ILKSAIKTIPIVFAAVT 89 (292) T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHH--HHHHHCCCCCEEEEEEC T ss_conf 9999999999975997656599995078999999999999973799899987509999--99983599998999726 No 32 >PRK10310 galactitol-specific PTS system component IIB; Provisional Probab=88.31 E-value=2.5 Score=23.53 Aligned_cols=83 Identities=17% Similarity=0.309 Sum_probs=54.3 Q ss_pred CCCEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 8874999958816--98999999999998099826545301038799998898765359829999726766851134652 Q gi|254780157|r 3 IAPPVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 3 ~~pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) |++||.+-+||-= ---++++..+.|++-||++++.=++.--.| .+ .++.+++|+-.-.... . T Consensus 1 MkKkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ev~----~~-----~~~~DlivtTt~~~~~-------~ 64 (94) T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE----TY-----MDGVHLICTTARVDRS-------F 64 (94) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHH----HC-----CCCCCEEEEECCCCCC-------C T ss_conf 995599985883759999999999999985980689997478755----41-----6897789992253776-------5 Q ss_pred CCCCEE-EECCCCCCCCCCCCHHH Q ss_conf 242036-61257766675001699 Q gi|254780157|r 81 TSLPVL-GVPIISQTLGGIDSLLS 103 (165) Q Consensus 81 t~~PVI-gVP~~~~~~~G~dallS 103 (165) -+.||| |.|-.+| -|.|.++- T Consensus 65 g~iPvi~g~~fLTG--iG~d~~~~ 86 (94) T PRK10310 65 GDIPLVHGMPFVSG--VGIEALQN 86 (94) T ss_pred CCCCEEECCCCCCC--CCHHHHHH T ss_conf 88877963420003--78899999 No 33 >PRK00002 aroB 3-dehydroquinate synthase; Reviewed Probab=88.02 E-value=2.6 Score=23.41 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=67.0 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---HCCHHHHHHHHHHHHHCCC---EEEEEEEC-CCCCCHHHH Q ss_conf 7499995881698999999999998099826545301---0387999988987653598---29999726-766851134 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---HRTPDRLIEFAKNARFEGF---KLIIAGAG-GAAHLPGMI 77 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l~~~~~~~~~~~~---~viIa~AG-~aaaLpgvv 77 (165) .|+.|+.-+.-+.-+.+.....|+..|+++...+..+ +++.+.+.++.+.+.+.+. .++|++-| --.-+.|.+ T Consensus 33 ~r~~iitD~~V~~l~~~~l~~~l~~~~~~~~~~~i~~gE~~K~l~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~DlaGF~ 112 (360) T PRK00002 33 RKVVIVTDETVAPLYLEKLRAALEAAGFEVDVVVLPDGEQYKSLETLERIYDALLEAGLDRSDTLIALGGGVVGDLAGFA 112 (360) T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHH T ss_conf 97999989856899999999999976990799996797431779899999999997699988731530663765889999 Q ss_pred HHHCC--CCEEEECCC Q ss_conf 65224--203661257 Q gi|254780157|r 78 AAMTS--LPVLGVPII 91 (165) Q Consensus 78 a~~t~--~PVIgVP~~ 91 (165) |+.-- .|.|-+|+. T Consensus 113 As~y~RGi~~i~iPTT 128 (360) T PRK00002 113 AATYMRGIRFIQVPTT 128 (360) T ss_pred HHHHHCCCCEEECCCH T ss_conf 9998479977974600 No 34 >cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=87.81 E-value=2.7 Score=23.33 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=61.3 Q ss_pred EEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC- Q ss_conf 499995881698---9999999999980998265453010387999988987653598299997267668511346522- Q gi|254780157|r 6 PVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT- 81 (165) Q Consensus 6 kV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t- 81 (165) ||++++-+..+- ...+.+.+..+++|++. +.+..++-.+.+-.+.++++..+++++||....-..++...+..-. T Consensus 1 kia~v~~~~~n~f~~~~~~Ga~~aA~~lG~~v-~~~~da~~d~~~Q~~~i~~~I~~gvDaIii~p~d~~a~~~~v~~A~~ 79 (294) T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEV-VATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAE 79 (294) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCEE-EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 98999578899899999999999999839989-99669988999999999999985999999938886787999999998 Q ss_pred -CCCEEEE Q ss_conf -4203661 Q gi|254780157|r 82 -SLPVLGV 88 (165) Q Consensus 82 -~~PVIgV 88 (165) -.|||.+ T Consensus 80 aGIpVv~~ 87 (294) T cd06316 80 AGIKLVFM 87 (294) T ss_pred CCCCEEEE T ss_conf 19967983 No 35 >cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail. Probab=87.45 E-value=2.9 Score=23.20 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=59.9 Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHCC---CCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH Q ss_conf 4999958816989---9999999999809---982654530103879999889876535982999972676685113465 Q gi|254780157|r 6 PVAIIMGSQSDWK---IMKYAADMLDTLG---IDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA 79 (165) Q Consensus 6 kV~Ii~GS~SD~~---~~~~a~~~L~~~g---I~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~ 79 (165) |+++.+..-+|-- ..+.+.+..+++| +..++.+..+.-.+.+-.+.++++..++++.||....-..++..++.- T Consensus 1 kIg~~~~~~~n~f~~~~~~~~~~~ak~~~~~~~~~~~~~~da~~D~~kQ~~~ie~~I~qgvD~Iiv~p~d~~a~~~~l~~ 80 (272) T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEE 80 (272) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH T ss_conf 98999368899799999999999998637667415899976999999999999999985999999978976788999999 Q ss_pred H--CCCCEEEEC Q ss_conf 2--242036612 Q gi|254780157|r 80 M--TSLPVLGVP 89 (165) Q Consensus 80 ~--t~~PVIgVP 89 (165) . .-.|||.+- T Consensus 81 A~~aGIpVV~~d 92 (272) T cd06300 81 ACEAGIPVVSFD 92 (272) T ss_pred HHHCCCEEEEEC T ss_conf 998599699966 No 36 >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated Probab=87.30 E-value=2.9 Score=23.14 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=28.5 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 9988749999588169899999999999809982654530103879999889876 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |+++-||++|.|+.+. +...+++.|-+.|.. |+-..|+++++.+..++. T Consensus 1 m~L~~Kv~lITGgs~G--IG~a~a~~la~~G~~----V~~~~r~~~~l~~~~~~~ 49 (246) T PRK05653 1 MSLQGKTALVTGASRG--IGRAIALRLAADGAR----VVIYDSNEEAAEALAEEL 49 (246) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHH T ss_conf 9989988999389758--999999999987999----999979999999999999 No 37 >KOG2835 consensus Probab=86.82 E-value=0.57 Score=27.74 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=52.0 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCHHHHHHHC Q ss_conf 9999999999980998265453010387999988987653598-299997267668511346522 Q gi|254780157|r 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF-KLIIAGAGGAAHLPGMIAAMT 81 (165) Q Consensus 18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~-~viIa~AG~aaaLpgvva~~t 81 (165) +.|+.-+.....-| +.+.++|||..++.-..+.++++..+. .++++.+|+++.|+.|..+++ T Consensus 250 ~~msr~a~~a~~~~--~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~ 312 (373) T KOG2835 250 PVMSRYATSAKSRG--VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG 312 (373) T ss_pred HHHHHHHHHCCCCC--EEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCC T ss_conf 04666654025666--1899951677777725677646366852332111553344450333677 No 38 >cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Probab=85.82 E-value=3.5 Score=22.64 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=60.8 Q ss_pred EEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC- Q ss_conf 499995881698999---9999999980998265453010387999988987653598299997267668511346522- Q gi|254780157|r 6 PVAIIMGSQSDWKIM---KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT- 81 (165) Q Consensus 6 kV~Ii~GS~SD~~~~---~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t- 81 (165) ||++++-+-+|--+. +.+.+..++++ .|++.+.+++-.+.+-.+.++++..++++.+|...--..++...+.... T Consensus 1 KIGviv~~~~n~f~~~~~~g~e~~a~~~~-g~~v~~~~~~~d~~~Q~~~i~~li~~~vDgIii~p~d~~~~~~~~~~a~~ 79 (272) T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLG-GVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANA 79 (272) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 98999389879899999999999999749-97899977999999999999999985999999955882111899999998 Q ss_pred -CCCEEEE Q ss_conf -4203661 Q gi|254780157|r 82 -SLPVLGV 88 (165) Q Consensus 82 -~~PVIgV 88 (165) -.|||.+ T Consensus 80 agIPvV~~ 87 (272) T cd06301 80 AGIPLVYV 87 (272) T ss_pred CCCCEEEE T ss_conf 69988999 No 39 >TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis. Probab=85.50 E-value=1 Score=26.14 Aligned_cols=80 Identities=25% Similarity=0.250 Sum_probs=49.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC--CCEEEECCCCC-------CC-----------CCCCCHHHHH Q ss_conf 9999889876535982999972676685113465224--20366125776-------66-----------7500169984 Q gi|254780157|r 46 DRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS--LPVLGVPIISQ-------TL-----------GGIDSLLSIV 105 (165) Q Consensus 46 ~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~--~PVIgVP~~~~-------~~-----------~G~dallS~v 105 (165) |.-.++..++++.|.|++|++ |+++.|...---.-. +||||||=--+ +- .-+|-|-||. T Consensus 93 DvSd~~~~n~~~~GlDAlIaI-GGdGTL~~A~~l~~~GGl~vVGVPKTIDNDl~~TD~TFGFDTAv~iATEAlDRLhtTA 171 (339) T TIGR02483 93 DVSDKIVANLKELGLDALIAI-GGDGTLGIARRLADKGGLPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTA 171 (339) T ss_pred ECCHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHH T ss_conf 320899998996498189986-6872689999999658985474157754675324402221007899999875240058 Q ss_pred HCCCCCCCEEEECCCCCCHHHHHHHH Q ss_conf 03569862044316753122899999 Q gi|254780157|r 106 QMPAGVPVGTMAIGQSGAINASLLAV 131 (165) Q Consensus 106 qMP~Gvpvatv~vg~~~~~NAal~A~ 131 (165) .-..=|=|.= | =|++|+|.|. T Consensus 172 eSH~RVmVvE--V---MGRhAGWIAL 192 (339) T TIGR02483 172 ESHHRVMVVE--V---MGRHAGWIAL 192 (339) T ss_pred HHHCCEEEEE--E---CCCCHHHHHH T ss_conf 7319489999--8---4854579998 No 40 >cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Probab=85.33 E-value=3.7 Score=22.49 Aligned_cols=82 Identities=15% Similarity=0.262 Sum_probs=60.0 Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 4999958816989---9999999999809982654530103879999889876535982999972676685113465224 Q gi|254780157|r 6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) |+++++-+-++-- ..+.+.+..+++|+ ++.+.++...+.+-.+.++++..++++.||...--+.++...+..... T Consensus 1 kIGv~vp~l~n~ff~~~~~g~e~~A~e~G~--~v~~~~~~~d~~~Q~~~i~~lia~~vD~Iii~p~d~~a~~~~l~~a~~ 78 (288) T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAAD 78 (288) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 989990798897999999999999997699--899971899999999999999984998999867753443999999997 Q ss_pred --CCEEEEC Q ss_conf --2036612 Q gi|254780157|r 83 --LPVLGVP 89 (165) Q Consensus 83 --~PVIgVP 89 (165) .|||.+- T Consensus 79 agIPVV~~D 87 (288) T cd01538 79 AGIPVIAYD 87 (288) T ss_pred CCCEEEEEC T ss_conf 599999987 No 41 >PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=84.76 E-value=1.8 Score=24.53 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=50.4 Q ss_pred CCEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEEEHHCC----HHHHHH------HHHHHHHCCCEEEEEEECCCC Q ss_conf 8749999588169--8999999999998099826545301038----799998------898765359829999726766 Q gi|254780157|r 4 APPVAIIMGSQSD--WKIMKYAADMLDTLGIDYEARIISAHRT----PDRLIE------FAKNARFEGFKLIIAGAGGAA 71 (165) Q Consensus 4 ~pkV~Ii~GS~SD--~~~~~~a~~~L~~~gI~~~~~V~SAHR~----p~~l~~------~~~~~~~~~~~viIa~AG~aa 71 (165) .+||+||.-..++ ...+++..+.|++-|+++-+.--+|+.. |+.-.. ...+.-...++.+|+. |+.+ T Consensus 1 M~kiGIi~~~~~~~a~~~a~~l~~~L~~~gi~v~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~Ivl-GGDG 79 (305) T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGMLGYANPDQPVCHTGIDALVPEGFDSSMKFAIVL-GGDG 79 (305) T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCH T ss_conf 988999973899899999999999999889999997441232287875532112441112633357773399998-3769 Q ss_pred CCHHHHH--HHCCCCEEEECC Q ss_conf 8511346--522420366125 Q gi|254780157|r 72 HLPGMIA--AMTSLPVLGVPI 90 (165) Q Consensus 72 aLpgvva--~~t~~PVIgVP~ 90 (165) .+-.+.- +....|++|+=. T Consensus 80 T~L~aar~~~~~~iPilGIN~ 100 (305) T PRK02649 80 TVLSAARQTAPCGIPLLTINT 100 (305) T ss_pred HHHHHHHHHCCCCCCEEEEEC T ss_conf 999999985336997898944 No 42 >PRK09072 short chain dehydrogenase; Provisional Probab=84.65 E-value=3.9 Score=22.29 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=25.1 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC Q ss_conf 998874999958816989999999999980998 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID 33 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~ 33 (165) |+++-|+++|.|..| -+.+.++..|.+.|.. T Consensus 1 M~l~~K~vlITGass--GIG~a~A~~la~~G~~ 31 (262) T PRK09072 1 MDLKDKRVLLTGASG--GIGEALAEALCAAGAR 31 (262) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCE T ss_conf 998998899948623--9999999999987998 No 43 >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st Probab=84.32 E-value=4.1 Score=22.20 Aligned_cols=41 Identities=10% Similarity=0.236 Sum_probs=35.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEEEEHHCCHH Q ss_conf 4999958816989999999999980-9982654530103879 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTL-GIDYEARIISAHRTPD 46 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~-gI~~~~~V~SAHR~p~ 46 (165) ||+++.|+-+|+-.+......|++. ++++.+-+.+.|..+. T Consensus 1 KI~~vtGtRae~~kl~pl~~~l~~~~~~~~~li~TGqH~~~~ 42 (363) T cd03786 1 KILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDME 42 (363) T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH T ss_conf 989999313719999999999974899988999938976701 No 44 >PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=83.17 E-value=2.5 Score=23.57 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=52.3 Q ss_pred CCCCCEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH Q ss_conf 9988749999588169--89999999999980998265453010387999988987653598299997267668511346 Q gi|254780157|r 1 MNIAPPVAIIMGSQSD--WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA 78 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD--~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva 78 (165) |+++ ||+|+.=..+. ...++++++.|+.-||++-+.-..+++.+.. .+.... .+.++.+|+ -|+.+.+-.+.- T Consensus 1 m~lk-~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~--~~~~~~-~~~~Dlvi~-lGGDGT~L~aar 75 (304) T PRK02645 1 MQLK-LVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYP--VFLASA-EELPDLAIV-LGGDGTVLAAAR 75 (304) T ss_pred CCCC-EEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC--CCCCCC-CCCCCEEEE-ECCCHHHHHHHH T ss_conf 9745-99999858999999999999999998889999844434447776--200144-668889999-786889999999 Q ss_pred H--HCCCCEEEECC Q ss_conf 5--22420366125 Q gi|254780157|r 79 A--MTSLPVLGVPI 90 (165) Q Consensus 79 ~--~t~~PVIgVP~ 90 (165) . ....|++|+-. T Consensus 76 ~~~~~~iPilGiN~ 89 (304) T PRK02645 76 HLAPHDIPILSFNV 89 (304) T ss_pred HHCCCCCCEEEEEC T ss_conf 85426998899824 No 45 >cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown. Probab=82.93 E-value=4.6 Score=21.84 Aligned_cols=101 Identities=26% Similarity=0.383 Sum_probs=61.8 Q ss_pred CCEEEEEE-CCCCCH-----HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC----- Q ss_conf 87499995-881698-----9999999999980998265453010387999988987653598299997267668----- Q gi|254780157|r 4 APPVAIIM-GSQSDW-----KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH----- 72 (165) Q Consensus 4 ~pkV~Ii~-GS~SD~-----~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa----- 72 (165) ..||++|. |+.--. .+..-...-|+.||++....+...|..-.-...+ +++.+.+.+++|+.+||+.- T Consensus 159 ~~~vglI~T~~ev~~~~i~dk~~~v~~~rl~~~G~~l~~~~~v~dd~~~ia~aI-~~~~~~ga~lvi~tgsasvDpdDvt 237 (312) T cd03522 159 PLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAI-AEALEAGAELLILTGGASVDPDDVT 237 (312) T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCCH T ss_conf 416899996786666503452478999999974984655795589899999999-9998689939994487542886341 Q ss_pred ------------------CHHH---HHHHCCCCEEEECCC--CCCCCCCCCHHHHH Q ss_conf ------------------5113---465224203661257--76667500169984 Q gi|254780157|r 73 ------------------LPGM---IAAMTSLPVLGVPII--SQTLGGIDSLLSIV 105 (165) Q Consensus 73 ------------------Lpgv---va~~t~~PVIgVP~~--~~~~~G~dallS~v 105 (165) +||. ++.+-..||||+|-- +...+|+|=+|.-+ T Consensus 238 P~AI~~aGg~i~~~G~PV~PGnml~l~~~~~~pViGlPGCa~s~k~n~fD~vLpRl 293 (312) T cd03522 238 PAAIRAAGGEVIRYGMPVDPGNLLLLGYLGGVPVIGLPGCARSPKLNGFDLVLPRL 293 (312) T ss_pred HHHHHHCCCCEEECCCCCCCCCEEEEEEECCEEEEECCCHHCCCCCCHHHHHHHHH T ss_conf 99999818867970576689986899985893799657210257764015102567 No 46 >cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=82.64 E-value=4.7 Score=21.77 Aligned_cols=81 Identities=10% Similarity=0.113 Sum_probs=56.5 Q ss_pred EEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--C Q ss_conf 99995881698---999999999998099826545301038799998898765359829999726766851134652--2 Q gi|254780157|r 7 VAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--T 81 (165) Q Consensus 7 V~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--t 81 (165) ++++.-+-++- .+.+.+.+.+++.|+ ++.+++++..+++-.++++++..++++.+|....-+..+...+.-. . T Consensus 2 IGvvv~~~~npff~~v~~gie~~a~~~G~--~~~i~~s~~d~~~q~~~i~~li~~~vDgiIi~p~~~~~~~~~~~~~~~~ 79 (267) T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKV--NLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKA 79 (267) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC T ss_conf 89996899897999999999999997499--9999839999999999999999749999999067610106999999975 Q ss_pred CCCEEEEC Q ss_conf 42036612 Q gi|254780157|r 82 SLPVLGVP 89 (165) Q Consensus 82 ~~PVIgVP 89 (165) ..|||.+- T Consensus 80 gIPvV~~d 87 (267) T cd06322 80 GIPVITVD 87 (267) T ss_pred CCCEEEEE T ss_conf 99789983 No 47 >pfam00781 DAGK_cat Diacylglycerol kinase catalytic domain. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The catalytic domain is assumed from the finding of bacterial homologues. YegS is the Escherichia coli protein in this family whose crystal structure reveals an active site in the inter-domain cleft formed by four conserved sequence motifs, revealing a novel metal-binding site. The residues of this site are conserved across the family. Probab=82.53 E-value=4.8 Score=21.74 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=50.1 Q ss_pred HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHH-HCCCEEEEEEECCCCCCHHHHHHHCCCCE-----EEECCCCCC Q ss_conf 999999998099826545301038799998898765-35982999972676685113465224203-----661257766 Q gi|254780157|r 21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNAR-FEGFKLIIAGAGGAAHLPGMIAAMTSLPV-----LGVPIISQT 94 (165) Q Consensus 21 ~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~-~~~~~viIa~AG~aaaLpgvva~~t~~PV-----IgVP~~~~~ 94 (165) +++...|++.++++++....- +.+.+ ++.+... ....+. |.++|+.+.+..++.++...+. +|+=|.+. T Consensus 18 ~~i~~~l~~~~~~~~~~~t~~-~~~~~--~~~~~~~~~~~~d~-vv~~GGDGTv~evvngl~~~~~~~~~plgiIP~GT- 92 (127) T pfam00781 18 DKVLEKLRKALNEAQVFETEE-GGPAV--ALELARALGDFKDL-VVVAGGDGTVNEVLNGLAGREDRLKPPLGIIPLGT- 92 (127) T ss_pred HHHHHHHHHCCCCEEEEECCC-CCHHH--HHHHHHHHCCCCCE-EEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCC- T ss_conf 999999998799759999898-88799--99999852358888-99988975799999999746887789789924876- Q ss_pred CCCCCCHHHHHHCCCCC Q ss_conf 67500169984035698 Q gi|254780157|r 95 LGGIDSLLSIVQMPAGV 111 (165) Q Consensus 95 ~~G~dallS~vqMP~Gv 111 (165) |-| +--++.+|... T Consensus 93 --gNd-fa~~lgip~~~ 106 (127) T pfam00781 93 --GND-FARALGIPGDP 106 (127) T ss_pred --HHH-HHHHCCCCCCH T ss_conf --758-99982999999 No 48 >cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con Probab=82.19 E-value=4.9 Score=21.66 Aligned_cols=87 Identities=15% Similarity=0.267 Sum_probs=62.0 Q ss_pred EEEEEECCCC-C---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH-HHHHHH Q ss_conf 4999958816-9---8999999999998099826545301038799998898765359829999726766851-134652 Q gi|254780157|r 6 PVAIIMGSQS-D---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP-GMIAAM 80 (165) Q Consensus 6 kV~Ii~GS~S-D---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp-gvva~~ 80 (165) +++++.-... . ....+.+...+++.|..+++.+...+..+++-.+.++.+..++++.+|........++ .-.+.. T Consensus 1 ~IG~i~p~~~~~~~~~~~~~g~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~l~~~~vd~ii~~~~~~~~~~~~~~~~~ 80 (269) T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAA 80 (269) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH T ss_conf 98999638878869999999999999981997699998499999999999999997499999946887444899999997 Q ss_pred CCCCEEEECCCC Q ss_conf 242036612577 Q gi|254780157|r 81 TSLPVLGVPIIS 92 (165) Q Consensus 81 t~~PVIgVP~~~ 92 (165) ...|||.+-... T Consensus 81 ~~iPvv~~~~~~ 92 (269) T cd01391 81 AGIPVVSLDATA 92 (269) T ss_pred CCCEEEEECCCC T ss_conf 698199967887 No 49 >cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2 Probab=81.82 E-value=5.1 Score=21.57 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=56.5 Q ss_pred EEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC- Q ss_conf 499995881698---9999999999980998265453010387999988987653598299997267668511346522- Q gi|254780157|r 6 PVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT- 81 (165) Q Consensus 6 kV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t- 81 (165) ||++++-+.+|- .+.+.+.+.++++|+ ++.+++.+..+++..++++.+..++++.+|...-....+...+..+. T Consensus 1 kIgvivp~~~~pf~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~e~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~ 78 (267) T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANA 78 (267) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 999996899898999999999999998499--999996999999999999999975999999931584155899999998 Q ss_pred -CCCEEEE Q ss_conf -4203661 Q gi|254780157|r 82 -SLPVLGV 88 (165) Q Consensus 82 -~~PVIgV 88 (165) ..||+.+ T Consensus 79 ~~iPvV~~ 86 (267) T cd01536 79 AGIPVVTV 86 (267) T ss_pred CCCCEEEE T ss_conf 79969998 No 50 >PRK10586 hypothetical protein; Provisional Probab=81.74 E-value=4.7 Score=21.78 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=59.1 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-HHHHHHHCCC Q ss_conf 749999588169899999999999809982654530103879999889876535982999972676685-1134652242 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL-PGMIAAMTSL 83 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL-pgvva~~t~~ 83 (165) .++.||.|-.+=...-+.....|+.-++.+.. -+-.=+..+..++.+..+. +.+++|++-|+..-- .-+++-...+ T Consensus 35 ~~~lii~g~~~~~~~~~~~~~sl~~~~~~~~~--f~Gecs~~ei~rl~~~~~~-~~d~IigvGGGK~iDtaK~vA~~~~~ 111 (362) T PRK10586 35 SRAVWIYGERAIAAAQPYLPPAFELPGAKHIL--FRGHCSESDVAQLAAESGD-DRQVVIGVGGGALLDTAKALARRLGL 111 (362) T ss_pred CCEEEEECHHHHHHHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHHCCC T ss_conf 84699988789999988876654025856998--7894589999999997355-88789995571999999999998199 Q ss_pred CEEEECCCCCC Q ss_conf 03661257766 Q gi|254780157|r 84 PVLGVPIISQT 94 (165) Q Consensus 84 PVIgVP~~~~~ 94 (165) |||-||+..++ T Consensus 112 pvv~vPTiASt 122 (362) T PRK10586 112 PFVAIPTIAAT 122 (362) T ss_pred CEEEEECHHCC T ss_conf 98996051105 No 51 >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Probab=81.48 E-value=4.3 Score=22.07 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=56.8 Q ss_pred CCCCEEEEEECCCCCHH-----HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCHH Q ss_conf 98874999958816989-----9999999999809982654530103879999889876535982-99997267668511 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWK-----IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK-LIIAGAGGAAHLPG 75 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~-----~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~-viIa~AG~aaaLpg 75 (165) .|+.||+|++|+.|... .++.+.+.|++-|.+.. -.-.-+. ........+++ ||++.-|.-+-- | T Consensus 2 ~~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~--~id~~~~------~~~~l~~~~~D~vf~~lHG~~GED-G 72 (304) T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAH--PIDPGED------PAAELKELGFDRVFNALHGRGGED-G 72 (304) T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE--EECCCCC------HHHHHHHCCCCEEEEECCCCCCCC-H T ss_conf 877718999367871289999999999998837599799--9828964------677875339999999068999856-4 Q ss_pred HHHHH---CCCCEEEECCCCCCCCCCCCHHHH-HHCCCCCCCEE Q ss_conf 34652---242036612577666750016998-40356986204 Q gi|254780157|r 76 MIAAM---TSLPVLGVPIISQTLGGIDSLLSI-VQMPAGVPVGT 115 (165) Q Consensus 76 vva~~---t~~PVIgVP~~~~~~~G~dallS~-vqMP~Gvpvat 115 (165) .+-++ ...|-.|+-+.++.+ ++|=.++- +---.|+|+.- T Consensus 73 ~iQglLe~~~IPYtGs~~~asal-~mDK~~tK~i~~~~gI~tp~ 115 (304) T PRK01372 73 TIQGLLELLGIPYTGSGVLASAL-AMDKLRTKLVWQAAGLPTAP 115 (304) T ss_pred HHHHHHHHCCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCCCC T ss_conf 99999998599835799899877-65389999999986999898 No 52 >PRK06346 consensus Probab=81.26 E-value=5.3 Score=21.45 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=29.0 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC Q ss_conf 9988749999588169899999999999809982654530103879999889876535 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE 58 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~ 58 (165) |+++-||++|.|+.+ -+...+++.|.+.|-..-+ ..|+.+++.+..++.+.. T Consensus 1 m~l~gKv~lITGgs~--GIG~a~a~~la~~Ga~V~i----~~r~~e~~~~~~~~l~~~ 52 (251) T PRK06346 1 MKLKGKVAIVTGAAS--GMGKSIAELFAKEGAKVVV----ADLNLERAQKVVEEITSN 52 (251) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEE----EECCHHHHHHHHHHHHHC T ss_conf 988998899947578--8999999999987998999----979899999999999963 No 53 >cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport. Probab=80.91 E-value=5.5 Score=21.37 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=60.3 Q ss_pred EEEEEECCCCCH--H-HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH-HC Q ss_conf 499995881698--9-9999999999809982654530103879999889876535982999972676685113465-22 Q gi|254780157|r 6 PVAIIMGSQSDW--K-IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA-MT 81 (165) Q Consensus 6 kV~Ii~GS~SD~--~-~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~-~t 81 (165) |+++++-|-+|- . +.+.+.+..+++|+++++.-...+....+-.+.++++..++++.||..+.-+.+|..++.+ .- T Consensus 1 ki~v~~~~l~npfw~~~~~Ga~~aA~e~G~~v~~~~~~~~~d~~~Qi~~ie~~i~~gvDaIii~p~d~~al~~~~~a~~a 80 (268) T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAA 80 (268) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC T ss_conf 98999578898799999999999999969979999589999999999999999983999999867986777899999986 Q ss_pred CCCEEEE Q ss_conf 4203661 Q gi|254780157|r 82 SLPVLGV 88 (165) Q Consensus 82 ~~PVIgV 88 (165) ..|||.+ T Consensus 81 gIPVV~~ 87 (268) T cd06306 81 SIPVIAL 87 (268) T ss_pred CCEEEEE T ss_conf 9829999 No 54 >cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=80.82 E-value=5.5 Score=21.35 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=60.0 Q ss_pred EEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 499995881698---99999999999809982654530103879999889876535982999972676685113465224 Q gi|254780157|r 6 PVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 6 kV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) ||+++..+.++- ...+.+.+..+++|+ ++.+..+.-.+.+-.+.++++..++++.||...--..++...+..... T Consensus 1 kIG~~~~~~~npf~~~~~~g~~~~a~~~G~--~v~~~~~~~d~~~Q~~~i~~~i~~~vd~iii~~~d~~~~~~~~~~a~~ 78 (282) T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA 78 (282) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 989994899897999999999999997299--999976999999999999999976998799811680566999999997 Q ss_pred --CCEEEEC Q ss_conf --2036612 Q gi|254780157|r 83 --LPVLGVP 89 (165) Q Consensus 83 --~PVIgVP 89 (165) .|||.+= T Consensus 79 aGIPVv~~d 87 (282) T cd06318 79 AGVPVVVVD 87 (282) T ss_pred CCCCEEEEC T ss_conf 799889973 No 55 >cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Probab=80.66 E-value=5.6 Score=21.32 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=58.8 Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-- Q ss_conf 4999958816989---99999999998099826545301038799998898765359829999726766851134652-- Q gi|254780157|r 6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-- 80 (165) Q Consensus 6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-- 80 (165) |++++.-+-++-- +.+.+.+..+++|+...+........+++-.++++++..++++.+|....-..++...+... T Consensus 1 kIGviv~~~~npf~~~~~~g~e~~a~~~G~~v~v~~~~~~~d~~~q~~~i~~~i~~~vdgii~~p~~~~~~~~~~~~a~~ 80 (275) T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK 80 (275) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH T ss_conf 98999489988899999999999999749989999689975899999999999974998798767880656999999986 Q ss_pred CCCCEEEEC Q ss_conf 242036612 Q gi|254780157|r 81 TSLPVLGVP 89 (165) Q Consensus 81 t~~PVIgVP 89 (165) .-.|||.+- T Consensus 81 ~gIpvv~~d 89 (275) T cd06320 81 KGIPVVNVN 89 (275) T ss_pred CCCEEEEEC T ss_conf 799099926 No 56 >cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold. Probab=80.42 E-value=5.7 Score=21.27 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=28.8 Q ss_pred EEEEE-CCCCCHHHHHHH---HHHH-HHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 99995-881698999999---9999-98099826545301038799998898765359829999726 Q gi|254780157|r 7 VAIIM-GSQSDWKIMKYA---ADML-DTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68 (165) Q Consensus 7 V~Ii~-GS~SD~~~~~~a---~~~L-~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG 68 (165) |++++ |+..|...-+-+ .+.+ +++|++....- +. .++..++.++.+.++++++||+... T Consensus 2 va~i~~g~~~D~s~n~~~~~g~~~~~~~~g~~~~~~e-~~--~~~d~~~~~~~~~~~g~~lIi~~g~ 65 (260) T cd06304 2 VALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVE-SV--EDADYEPNLRQLAAQGYDLIFGVGF 65 (260) T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEE-CC--CHHHHHHHHHHHHHCCCCEEEECCH T ss_conf 8999828999876889999999999998698599990-69--9899999999999879999999367 No 57 >cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability. Probab=80.19 E-value=5.8 Score=21.22 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=60.4 Q ss_pred EEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--C Q ss_conf 99995881698---999999999998099826545301038799998898765359829999726766851134652--2 Q gi|254780157|r 7 VAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--T 81 (165) Q Consensus 7 V~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--t 81 (165) |+++.-+-+|- .+.+.+...++++| |.+.+...+..+++..++++.+..++++.+|...-.+.++...+.-. . T Consensus 2 IGvivp~l~npff~~~~~gi~~~a~~~G--y~~~i~~s~~~~~~e~~~i~~l~~~~vdgiI~~p~~~~~~~~~i~~~~~~ 79 (268) T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELG--YELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA 79 (268) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHC T ss_conf 8999888979999999999999999759--98999819999999999999999649998997565421246999999976 Q ss_pred CCCEEEEC Q ss_conf 42036612 Q gi|254780157|r 82 SLPVLGVP 89 (165) Q Consensus 82 ~~PVIgVP 89 (165) ..|||.+= T Consensus 80 ~iPvV~id 87 (268) T cd06323 80 GIPVFTID 87 (268) T ss_pred CCCEEEEC T ss_conf 99689963 No 58 >PRK07774 short chain dehydrogenase; Provisional Probab=78.75 E-value=6.4 Score=20.93 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=38.0 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEE Q ss_conf 998874999958816989999999999980998265453010387999988987653598299 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~vi 63 (165) |+++-||++|.|+.+ -+...++..|-+.|... +-.+|+++++.+..++.+.++.+++ T Consensus 2 ~~L~gK~alVTGgs~--GiG~aia~~la~~Ga~V----~i~~~~~~~~~~~~~~i~~~g~~~~ 58 (250) T PRK07774 2 FDFDDKVAIVTGAAG--GIGQAYAEALAREGASV----VVADINAEGAERVAKQIVADGGTAI 58 (250) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEE----EEEECCHHHHHHHHHHHHHCCCEEE T ss_conf 077998899979768--89999999999869999----9997988999999999985598499 No 59 >PRK07890 short chain dehydrogenase; Provisional Probab=78.69 E-value=6.4 Score=20.92 Aligned_cols=55 Identities=27% Similarity=0.213 Sum_probs=34.4 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE Q ss_conf 9988749999588169899999999999809982654530103879999889876535982 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~ 61 (165) |.++-||++|.|+.+ -+...+++.|-+.|....+ ..|+.+++.+..++.+..+.+ T Consensus 1 M~L~gK~alVTG~s~--GIG~aia~~la~~Ga~V~i----~~r~~~~l~~~~~~i~~~g~~ 55 (258) T PRK07890 1 MLLKDKVVVVSGVGP--GLGTTLAVRAAREGADVVL----AARTAERLDEVAKQIDDLGRR 55 (258) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEE----EECCHHHHHHHHHHHHHCCCC T ss_conf 968998899968565--8999999999987998999----979899999999999964995 No 60 >cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold. Probab=76.61 E-value=7.3 Score=20.54 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=28.3 Q ss_pred EEEEEE--CCCCCHHHHHHHHHHH----HHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 499995--8816989999999999----9809982654530103879999889876535982999972 Q gi|254780157|r 6 PVAIIM--GSQSDWKIMKYAADML----DTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA 67 (165) Q Consensus 6 kV~Ii~--GS~SD~~~~~~a~~~L----~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A 67 (165) ||++|. |+-.|...-+.+.+-+ +++|++....-. .++....+-++.+-.+++++||+.. T Consensus 1 kva~i~d~G~i~D~s~Nqs~~eG~~~~~~~~g~~~~~~e~---~~~~d~~~~~~~~~~~g~~lIi~~g 65 (265) T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVES---KSDADYEPNLEQLADAGYDLIVGVG 65 (265) T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEECC T ss_conf 9899977889998878899999999999986993899937---9989999999999987999999917 No 61 >COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only] Probab=76.58 E-value=7.4 Score=20.54 Aligned_cols=108 Identities=20% Similarity=0.373 Sum_probs=68.7 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCE--EEEC Q ss_conf 88169899999999999809982654530103879999889876535982999972676685113465224203--6612 Q gi|254780157|r 12 GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPV--LGVP 89 (165) Q Consensus 12 GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PV--IgVP 89 (165) |-.......++..+.|++.|.+++.++.... ....++++++-.++++.+| ++|+.+-+.-|+.++...+. +|+= T Consensus 14 G~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~vi-a~GGDGTv~evingl~~~~~~~Lgil 89 (301) T COG1597 14 GKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVI-AAGGDGTVNEVANGLAGTDDPPLGIL 89 (301) T ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEEECCC---HHHHHHHHHHHHCCCCEEE-EECCCCHHHHHHHHHHCCCCCCEEEE T ss_conf 6500577799999999972864699970375---2299999998645898899-96348879999988733799817993 Q ss_pred CCCC-C-----CCC-CCCHHHHHHCCCCCCCEEEECCCCCC Q ss_conf 5776-6-----675-00169984035698620443167531 Q gi|254780157|r 90 IISQ-T-----LGG-IDSLLSIVQMPAGVPVGTMAIGQSGA 123 (165) Q Consensus 90 ~~~~-~-----~~G-~dallS~vqMP~Gvpvatv~vg~~~~ 123 (165) |.+. + ++- .|.+...++.-..-..-.+.++..|+ T Consensus 90 P~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg~~~~ 130 (301) T COG1597 90 PGGTANDFARALGIPLDDIEAALELIKSGETRKVDLGQVNG 130 (301) T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEHHHCCC T ss_conf 48657788998599945499999998639869975343389 No 62 >TIGR02638 lactal_redase lactaldehyde reductase; InterPro: IPR013460 The proteins in this entry form a distinct clade of iron-containing alcohol dehydrogenases. The genes encoding these proteins are generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in the production of lactaldehydes, which are reduced by these enzymes to 1,2 propanediol . These enzymes are also sometimes called 1,2 propanediol oxidoreductases. They are active under anaerobic conditions in E. coli, while being inactivated by reactive oxygen species under aerobic conditions . Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.. Probab=76.41 E-value=7.2 Score=20.61 Aligned_cols=101 Identities=21% Similarity=0.352 Sum_probs=71.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCC--------------------CCHH Q ss_conf 899999999999809982654-5301038799998898765359829999726766--------------------8511 Q gi|254780157|r 17 WKIMKYAADMLDTLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAA--------------------HLPG 75 (165) Q Consensus 17 ~~~~~~a~~~L~~~gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aa--------------------aLpg 75 (165) +.++++..+.||+++|+|+++ =.-+==|-+-+.+=+..+++.|++.|||+-|+|- .|-| T Consensus 43 ~gv~~~v~~~Ld~~~~~Y~lfd~v~pNPT~~~Vk~G~a~~~~sgaDy~iAiGGGSp~DtAKAIgIi~~NPeF~d~~SLeG 122 (380) T TIGR02638 43 FGVADKVTELLDEAKIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIVNNPEFSDVVSLEG 122 (380) T ss_pred HHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCEEECCCCCCCCCCCCCC T ss_conf 65799999998622788346257788975899998999986058977998568974000303200002838455110457 Q ss_pred HHHHHC-CCCEEEECCCCCC------------------CCC-----------CCCHHHHHHCCCCCCCEEEECCCC Q ss_conf 346522-4203661257766------------------675-----------001699840356986204431675 Q gi|254780157|r 76 MIAAMT-SLPVLGVPIISQT------------------LGG-----------IDSLLSIVQMPAGVPVGTMAIGQS 121 (165) Q Consensus 76 vva~~t-~~PVIgVP~~~~~------------------~~G-----------~dallS~vqMP~Gvpvatv~vg~~ 121 (165) |-.-.. ..|.|++|+-.|+ +.= .| =-=|.+||+++.=+| |.| T Consensus 123 va~tk~~~vP~~AipTTaGTAAEvTiNyVItDE~~~~K~VcvDp~~IP~vAv~D-~~~M~~mP~~ltAAT---GmD 194 (380) T TIGR02638 123 VADTKKKGVPIIAIPTTAGTAAEVTINYVITDEENKRKFVCVDPHDIPDVAVVD-AELMLSMPKSLTAAT---GMD 194 (380) T ss_pred CCCCCCCCCCEEECCCCCCHHHHHHHCCEEECCCCCEEEEEECCCCCCEEEEEC-HHHHHHCCHHHHHHH---CHH T ss_conf 553125666158668875314442215147624545126887567678066547-377621550000000---201 No 63 >PRK06949 short chain dehydrogenase; Provisional Probab=76.02 E-value=7.6 Score=20.44 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=36.8 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 9988749999588169899999999999809------------------------9826545301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) |+++-||++|.|+.+ -+...++..|.+-| .+... +..=-+.++.+.+++++.. T Consensus 5 ~~L~gKvalVTGas~--GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~-~~~Dv~~~~~v~~~v~~~~ 81 (258) T PRK06949 5 INLEGKVALVTGASS--GLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAEGGAAHV-VSLDVTDYQSIKAAVAHAE 81 (258) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHH T ss_conf 878999899958577--9999999999987999999969889999999999965992899-9826899999999999999 Q ss_pred H--CCCEEEEEEECCC Q ss_conf 3--5982999972676 Q gi|254780157|r 57 F--EGFKLIIAGAGGA 70 (165) Q Consensus 57 ~--~~~~viIa~AG~a 70 (165) + ..++++|..||.. T Consensus 82 ~~~G~iDiLVnnAG~~ 97 (258) T PRK06949 82 TEAGTIDILVNNSGVS 97 (258) T ss_pred HHHCCCCEEEECCCCC T ss_conf 9849998999899889 No 64 >PRK07454 short chain dehydrogenase; Provisional Probab=75.57 E-value=7.8 Score=20.36 Aligned_cols=67 Identities=24% Similarity=0.229 Sum_probs=33.4 Q ss_pred CCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCC------------------------EEEEEEEHHCCHHHHHHHHHHH Q ss_conf 9988-74999958816989999999999980998------------------------2654530103879999889876 Q gi|254780157|r 1 MNIA-PPVAIIMGSQSDWKIMKYAADMLDTLGID------------------------YEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~-pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~------------------------~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |+|+ .||++|.|..|-+ ...++..|.+-|.. .....+ =-..++.+.+.++.. T Consensus 1 m~~~~mKvalITGas~GI--G~a~A~~la~~G~~V~l~~R~~~~l~~~~~e~~~~g~~~~~~~~-Dvt~~~~v~~~~~~~ 77 (241) T PRK07454 1 MSLNSMPTALITGASRGI--GKATALAFAKAGWDLALVARSQDALEALAEELRSTGVKVAAYSI-DLSNPEAIAPGIAEL 77 (241) T ss_pred CCCCCCCEEEECCCCCHH--HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE-ECCCHHHHHHHHHHH T ss_conf 998999889991758789--99999999987998999989999999999999965992899995-189999999999999 Q ss_pred HH--CCCEEEEEEECCC Q ss_conf 53--5982999972676 Q gi|254780157|r 56 RF--EGFKLIIAGAGGA 70 (165) Q Consensus 56 ~~--~~~~viIa~AG~a 70 (165) .+ ..++++|..||.. T Consensus 78 ~~~~G~iDiLVnNAG~~ 94 (241) T PRK07454 78 LEQFGCPSVLINNAGAA 94 (241) T ss_pred HHHCCCCCEEEECCCCC T ss_conf 99759988999889889 No 65 >cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=75.39 E-value=7.9 Score=20.33 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=59.7 Q ss_pred EEEEEECCCCCHHH----HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH--H Q ss_conf 49999588169899----99999999980998265453010387999988987653598299997267668511346--5 Q gi|254780157|r 6 PVAIIMGSQSDWKI----MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA--A 79 (165) Q Consensus 6 kV~Ii~GS~SD~~~----~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva--~ 79 (165) |++++.-+-++ |+ .+.+.+..+++|+ ++.+.+++.++++-.+.++++..++++.||...--..++...+. . T Consensus 1 kIg~vv~~~~n-pF~~~~~~G~~~~a~~~G~--~~~~~~~~~d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~~~~~~a~ 77 (277) T cd06319 1 QIAYIVSDLRI-PFWQIMGRGVKSKAKALGY--DAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAA 77 (277) T ss_pred CEEEEECCCCC-HHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH T ss_conf 98999189998-6999999999999997299--89997699999999999999996699879964777411099999999 Q ss_pred HCCCCEEEEC Q ss_conf 2242036612 Q gi|254780157|r 80 MTSLPVLGVP 89 (165) Q Consensus 80 ~t~~PVIgVP 89 (165) ....|||-+- T Consensus 78 ~~gIPvv~~d 87 (277) T cd06319 78 QAKIPVVIAD 87 (277) T ss_pred HCCCCEEEEE T ss_conf 7699789986 No 66 >COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] Probab=75.05 E-value=6.8 Score=20.75 Aligned_cols=55 Identities=15% Similarity=0.069 Sum_probs=47.0 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCC-CCEEEEEEEHHCCHHHHHHHHHHHHHC Q ss_conf 8749999588169899999999999809-982654530103879999889876535 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLG-IDYEARIISAHRTPDRLIEFAKNARFE 58 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~g-I~~~~~V~SAHR~p~~l~~~~~~~~~~ 58 (165) +-||.+|.|---|.-.|......+++.+ +++.+-+.+-||..+-+..|.+..+.+ T Consensus 3 ~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~ 58 (383) T COG0381 3 MLKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIR 58 (383) T ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCC T ss_conf 63899998558999987099999985899735999706654277899999982898 No 67 >PRK13057 putative lipid kinase; Reviewed Probab=74.94 E-value=8.1 Score=20.26 Aligned_cols=68 Identities=26% Similarity=0.441 Sum_probs=48.5 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--CCCCEEEECCC Q ss_conf 999999999998099826545301038799998898765359829999726766851134652--24203661257 Q gi|254780157|r 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--TSLPVLGVPII 91 (165) Q Consensus 18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--t~~PVIgVP~~ 91 (165) ...+++...|++-|+++++.... .+.+..++++.. .++++++|+ +|+.+.+.-|+.++ +..| +|+=|. T Consensus 13 ~~~~~~~~~l~~~g~~~~~~~T~---~~g~a~~~~~~~-~~~~d~vv~-~GGDGTv~ev~~gl~~~~~~-lgiiP~ 82 (287) T PRK13057 13 AALGAARAALEAAGLELVEPHPE---SPADLSEVIEAH-ADGVDLVIV-GGGDGTLNAAAPALVETGLP-LGILPL 82 (287) T ss_pred HHHHHHHHHHHHCCCEEEEEECC---CHHHHHHHHHHH-HCCCCEEEE-ECCHHHHHHHHHHHCCCCCC-EEEECC T ss_conf 31999999999879979999549---878999999998-669998999-88589999999986057983-699738 No 68 >cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=74.51 E-value=8.3 Score=20.19 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=63.5 Q ss_pred EEEEECCCCC-H--HHHHHHHHHHHHCCCC---EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 9999588169-8--9999999999980998---26545301038799998898765359829999726766851134652 Q gi|254780157|r 7 VAIIMGSQSD-W--KIMKYAADMLDTLGID---YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 7 V~Ii~GS~SD-~--~~~~~a~~~L~~~gI~---~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) |++++.+.++ + ...+.+....+++|.. +++.+..+...+.+-.+.++++..++++++|...--+.++..++.-. T Consensus 2 IGv~~~~~~~~f~~~~~~~~~~~a~~~g~~~~~v~~~~~da~~D~~~Q~~~ie~lI~qgvDaIiv~p~d~~a~~~~v~~a 81 (274) T cd06311 2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKA 81 (274) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH T ss_conf 89993489897999999999999998276468927999718999999999999999749999999579778889999999 Q ss_pred CC--CCEEEECC Q ss_conf 24--20366125 Q gi|254780157|r 81 TS--LPVLGVPI 90 (165) Q Consensus 81 t~--~PVIgVP~ 90 (165) .. .|||.+=. T Consensus 82 ~~aGIpVV~~D~ 93 (274) T cd06311 82 KKAGIFVVVVDR 93 (274) T ss_pred HHCCCEEEEECC T ss_conf 986997999788 No 69 >cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally. Probab=73.51 E-value=8.8 Score=20.04 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=56.0 Q ss_pred EEEEECC-CCCHH--HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--C Q ss_conf 9999588-16989--99999999998099826545301038799998898765359829999726766851134652--2 Q gi|254780157|r 7 VAIIMGS-QSDWK--IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--T 81 (165) Q Consensus 7 V~Ii~GS-~SD~~--~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--t 81 (165) |++++.+ ++.+- ..+.+.+.+++.|+ ++.++.++..+++-.+.++++..++++.+|...--..++...+... . T Consensus 2 IG~~~~~~~npf~~~~~~gie~~a~~~G~--~l~~~~~~~d~~~q~~~i~~li~~~vDgIii~p~~~~~~~~~l~~a~~a 79 (273) T cd06309 2 VGFSQVGAESPWRTAETKSIKDAAEKRGF--DLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA 79 (273) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHC T ss_conf 89995799997999999999999997699--8999769999999999999999759999998057654358999999974 Q ss_pred CCCEEEEC Q ss_conf 42036612 Q gi|254780157|r 82 SLPVLGVP 89 (165) Q Consensus 82 ~~PVIgVP 89 (165) -.|||-+= T Consensus 80 gIPvV~~d 87 (273) T cd06309 80 GIPVILVD 87 (273) T ss_pred CCCEEEEC T ss_conf 99889982 No 70 >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=73.35 E-value=8.9 Score=20.01 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=37.3 Q ss_pred CCCCCEEEEEECCCCC----------------------HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH- Q ss_conf 9988749999588169----------------------89999999999980998265453010387999988987653- Q gi|254780157|r 1 MNIAPPVAIIMGSQSD----------------------WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF- 57 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD----------------------~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~- 57 (165) |+++-|+++|.|+.|- .+..+++...++++|..+....+- -+.++.+.++.+.... T Consensus 1 m~L~gK~~lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~D-v~~~~~v~~~~~~~~~~ 79 (253) T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAQCAALGGEAEVYAAN-VTDEEDVEATFAQIAED 79 (253) T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHH T ss_conf 97899889994887789999999999879989999799999999999999659948999824-79999999999999998 Q ss_pred -CCCEEEEEEECC Q ss_conf -598299997267 Q gi|254780157|r 58 -EGFKLIIAGAGG 69 (165) Q Consensus 58 -~~~~viIa~AG~ 69 (165) ..++++|..||. T Consensus 80 ~g~iD~lVnNAGi 92 (253) T PRK08217 80 FGQLNGLINNAGI 92 (253) T ss_pred HCCCCEEEECCCC T ss_conf 3998599985743 No 71 >PRK07576 short chain dehydrogenase; Provisional Probab=72.13 E-value=9.5 Score=19.83 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=29.6 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCC Q ss_conf 99887499995881698999999999998099826545301038799998898765359 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEG 59 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~ 59 (165) |+.+-||++|.|+.+- +...+++.|-+.|-. +-+ ..|+.+++.+..++.+..+ T Consensus 4 ~~L~gK~alVTGgs~G--IG~aia~~la~~Ga~--V~i--~~r~~~~~~~~~~~l~~~~ 56 (260) T PRK07576 4 FRLAGKNVFVVGGTSG--INLGIAQAFARAGAN--VAV--ASRSQEKVDAAVAQLQQAG 56 (260) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCE--EEE--EECCHHHHHHHHHHHHHCC T ss_conf 4238998999589619--999999999987999--999--9798899999999999539 No 72 >PRK09701 D-allose transporter subunit; Provisional Probab=71.75 E-value=9.6 Score=19.77 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=63.3 Q ss_pred CCEEEEEECCCCCH--H-HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 87499995881698--9-99999999998099826545301038799998898765359829999726766851134652 Q gi|254780157|r 4 APPVAIIMGSQSDW--K-IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 4 ~pkV~Ii~GS~SD~--~-~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) ..++++++-+.++- . +.+.+.+..+++|+++++......-.+..=.+.++++..++++.||...--+.++...+..- T Consensus 24 ~~~iavi~k~~~npf~~~~~~Ga~~aAk~~G~~v~v~~~~~~~D~~~Qi~~Ie~~I~~gvdaIii~p~d~~a~~~~i~~A 103 (311) T PRK09701 24 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 103 (311) T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH T ss_conf 68499996888998999999999999998699799992798789999999999999759999999189877889999999 Q ss_pred C--CCCEEEEC Q ss_conf 2--42036612 Q gi|254780157|r 81 T--SLPVLGVP 89 (165) Q Consensus 81 t--~~PVIgVP 89 (165) . -.|||.+= T Consensus 104 ~~aGIpVV~~D 114 (311) T PRK09701 104 WKKGIYLVNLD 114 (311) T ss_pred HHCCCCEEECC T ss_conf 97799189636 No 73 >KOG3857 consensus Probab=71.46 E-value=9.8 Score=19.73 Aligned_cols=111 Identities=21% Similarity=0.302 Sum_probs=68.3 Q ss_pred CEEEEEE-CCCCCHHHHHHHHHHHHHCCCCEEEEEE-EHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH----- Q ss_conf 7499995-8816989999999999980998265453-01038799998898765359829999726766851134----- Q gi|254780157|r 5 PPVAIIM-GSQSDWKIMKYAADMLDTLGIDYEARII-SAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI----- 77 (165) Q Consensus 5 pkV~Ii~-GS~SD~~~~~~a~~~L~~~gI~~~~~V~-SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv----- 77 (165) .|+.++. -.-+.++..+.+.+.|++-||+|+++=- -.--|-.-+.+-++.++.++.+.|+++-|+|+|----- T Consensus 71 Kk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~A 150 (465) T KOG3857 71 KKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLA 150 (465) T ss_pred CCEEEEECCCHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 42589607774441417899999997598169724764798623499999998733665589876850455688898860 Q ss_pred --------------------HHHCCCCEEEECCCCCCCCC----------------------------CCCHHHHHHCCC Q ss_conf --------------------65224203661257766675----------------------------001699840356 Q gi|254780157|r 78 --------------------AAMTSLPVLGVPIISQTLGG----------------------------IDSLLSIVQMPA 109 (165) Q Consensus 78 --------------------a~~t~~PVIgVP~~~~~~~G----------------------------~dallS~vqMP~ 109 (165) .+.--+|.|++|+-.|...- +--=+.|+.||+ T Consensus 151 sn~~~eflDyvg~pigk~~~~s~p~lPLiAipTTaGTgSEtT~~AI~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~ 230 (465) T KOG3857 151 SNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTTAGTGSETTRFAIIDYEELKIKMGIIDKNIKPTLAVNDPLTMLGLPP 230 (465) T ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCHHHHEEEEEECCCCCCEEEECCHHHHCCCCH T ss_conf 28876300023786666665555556347502578766444015885333330011221024564044138377516986 Q ss_pred CCCCEE Q ss_conf 986204 Q gi|254780157|r 110 GVPVGT 115 (165) Q Consensus 110 Gvpvat 115 (165) .+.-+| T Consensus 231 ~v~a~t 236 (465) T KOG3857 231 RVTAAT 236 (465) T ss_pred HHHHHC T ss_conf 776650 No 74 >COG4126 Hydantoin racemase [Amino acid transport and metabolism] Probab=71.27 E-value=2.1 Score=24.09 Aligned_cols=62 Identities=18% Similarity=0.388 Sum_probs=25.4 Q ss_pred HHHHHHCCCCEEEE--------EEEHHCCHHHHH-----HHHHHHHHCCCE-EEEEEECCCCCCHHHHHHHCCCCEE Q ss_conf 99999809982654--------530103879999-----889876535982-9999726766851134652242036 Q gi|254780157|r 24 ADMLDTLGIDYEAR--------IISAHRTPDRLI-----EFAKNARFEGFK-LIIAGAGGAAHLPGMIAAMTSLPVL 86 (165) Q Consensus 24 ~~~L~~~gI~~~~~--------V~SAHR~p~~l~-----~~~~~~~~~~~~-viIa~AG~aaaLpgvva~~t~~PVI 86 (165) ...++.||+....+ |...|..|++.. ++.+..++++.+ +++.+|||++. .-.+.-.+-.||| T Consensus 126 ~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~l-a~~Lq~~~gvPVI 201 (230) T COG4126 126 EELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDL-ADQLQKAFGVPVI 201 (230) T ss_pred HHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH-HHHHHHHHCCCCC T ss_conf 999986373234553233798701036976789999999999986532888899858217779-9999997199846 No 75 >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=70.27 E-value=10 Score=19.57 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=22.7 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 99887499995881698999999999998099 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) |+++-|+++|.|+.+.+ ...+++.|-+.|. T Consensus 2 m~l~gK~alITGgs~GI--G~aia~~la~~G~ 31 (250) T PRK07231 2 MRLEGKVAIVTGAGSGF--GEGIARRFAAEGA 31 (250) T ss_pred CCCCCCEEEEECCCCHH--HHHHHHHHHHCCC T ss_conf 07699889993888689--9999999998799 No 76 >PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=70.23 E-value=4.8 Score=21.76 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=43.1 Q ss_pred EEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH-HHCC Q ss_conf 4999958816--989999999999980998265453010387999988987653598299997267668511346-5224 Q gi|254780157|r 6 PVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA-AMTS 82 (165) Q Consensus 6 kV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva-~~t~ 82 (165) ||+|+.-... -...+++..+.|++.|+++-+.--.+...+..-..-........++.+|+. |+.+.+-.+.. +... T Consensus 2 KigIv~n~~k~~a~~~a~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l-GGDGT~L~a~~~~~~~ 80 (278) T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSDTYEHLPQFSEEDVLPLEEFDVDFILAI-GGDGTILRIEHKTKKE 80 (278) T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEE-CCCHHHHHHHHHCCCC T ss_conf 999992189989999999999999988998999747865666555567675435787899998-7868999999964789 Q ss_pred CCEEEECC Q ss_conf 20366125 Q gi|254780157|r 83 LPVLGVPI 90 (165) Q Consensus 83 ~PVIgVP~ 90 (165) .|++|+-. T Consensus 81 iPilGiN~ 88 (278) T PRK03708 81 IPILSINM 88 (278) T ss_pred CCEEEEEC T ss_conf 98898835 No 77 >PRK06940 short chain dehydrogenase; Provisional Probab=70.05 E-value=10 Score=19.53 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=25.5 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE Q ss_conf 988749999588169899999999999809982654530103879999889876535982 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~ 61 (165) +++.||+|+.|| | -+...+++.|.. |- +|.-..|+.+++.+..++.+..+.+ T Consensus 2 rL~~kV~v~tGa-~--GIG~aiA~~la~-Ga----~vvi~~~~~~~l~~~~~~l~~~g~~ 53 (277) T PRK06940 2 NMSKEVVVVIGA-G--GMGQAIARRVGS-GK----TVLLADYNEENLQAVARTLREAGFD 53 (277) T ss_pred CCCCCEEEECCC-C--HHHHHHHHHHHH-CC----EEEEEECCHHHHHHHHHHHHHCCCE T ss_conf 989929999781-6--999999999981-99----8999989889999999998722882 No 78 >PRK03202 6-phosphofructokinase; Provisional Probab=69.75 E-value=11 Score=19.49 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=54.4 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH----CCCCEE-------------E----------------EEEEHHC-----C Q ss_conf 887499995881698999999999998----099826-------------5----------------4530103-----8 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDT----LGIDYE-------------A----------------RIISAHR-----T 44 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~----~gI~~~-------------~----------------~V~SAHR-----~ 44 (165) |.++++|+.++ -|-|-++.+...+-+ .|++.- + .++.-.| + T Consensus 1 ~~kriaIltsG-G~~pGmNa~ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LgtsR~~~~~~ 79 (323) T PRK03202 1 MMKKIGVLTSG-GDAPGMNAAIRGVVRTAISEGLEVYGIYNGYLGLLEGDIIDLDRASVSDLINRGGTALGSARYPEFKL 79 (323) T ss_pred CCCEEEEECCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCEEECCHHHHHHHHHCCCCEEEECCCCCCCC T ss_conf 98669999368-88677899999999999978999999916778864898576999999999847986742048887778 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--HCCCCEEEECCC Q ss_conf 79999889876535982999972676685113465--224203661257 Q gi|254780157|r 45 PDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--MTSLPVLGVPII 91 (165) Q Consensus 45 p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--~t~~PVIgVP~~ 91 (165) ++...+..++++..+++.+|.+-| .+.+-++-.- .-..||||+|-. T Consensus 80 ~~~~~~~~~~l~~~~Id~Li~IGG-dgS~~~a~~L~~~~~i~vigIPkT 127 (323) T PRK03202 80 EEGRAKAIENLKKHGIDALVVIGG-DGSYDGAKKLSEEYGIPCIGIPKT 127 (323) T ss_pred HHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHCCCCCEEEECCC T ss_conf 889999999999829999999379-469999999984379748972144 No 79 >PRK07814 short chain dehydrogenase; Provisional Probab=69.69 E-value=11 Score=19.49 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=33.5 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHHH Q ss_conf 988749999588169899999999999809------------------------98265453010387999988987653 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNARF 57 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~~ 57 (165) +++-||++|.|+.+- +...++..|.+.| ..+....+ =-+.++.+.+++++..+ T Consensus 7 ~L~gKvalITGgs~G--IG~aia~~la~~Ga~V~i~~~~~~~l~~~~~~i~~~g~~~~~~~~-Dv~~~~~v~~~v~~~~~ 83 (263) T PRK07814 7 RLDGQVAVVTGAGRG--LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAA-DLAHPEATAGLAGQAVE 83 (263) T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHHHHHH T ss_conf 899998999589668--999999999987998999969899999999999852992899981-58999999999999999 Q ss_pred --CCCEEEEEEECCC Q ss_conf --5982999972676 Q gi|254780157|r 58 --EGFKLIIAGAGGA 70 (165) Q Consensus 58 --~~~~viIa~AG~a 70 (165) ..++++|.-||.. T Consensus 84 ~~G~iDiLVnNAg~~ 98 (263) T PRK07814 84 AFGRLDIVVNNVGGT 98 (263) T ss_pred HHCCCCEEEECCCCC T ss_conf 829988999898667 No 80 >PRK06124 gluconate 5-dehydrogenase; Provisional Probab=68.99 E-value=11 Score=19.39 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=31.2 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCC Q ss_conf 99887499995881698999999999998099826545301038799998898765359 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEG 59 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~ 59 (165) ++++-|+++|.|+.+- +...+++.|-+.|... -+ .-|+++++.+..++.+..+ T Consensus 10 ~~L~gK~alITGgs~G--IG~~ia~~la~~Ga~V--~i--~~r~~~~~~~~~~~l~~~g 62 (259) T PRK06124 10 FSLAGQVALVTGSARG--LGLEIARALAEAGAHV--LV--NGRNAARVEAAVAALRAAG 62 (259) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEE--EE--EECCHHHHHHHHHHHHHCC T ss_conf 0999998999286748--9999999999879999--99--9698899999999999659 No 81 >cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold. Probab=68.54 E-value=11 Score=19.33 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=62.5 Q ss_pred EEEEEE-CCCCCHHHHHHHHHHHH----HCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHHHHH Q ss_conf 499995-88169899999999999----8099826545301038799998898765359829999726-76685113465 Q gi|254780157|r 6 PVAIIM-GSQSDWKIMKYAADMLD----TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG-GAAHLPGMIAA 79 (165) Q Consensus 6 kV~Ii~-GS~SD~~~~~~a~~~L~----~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG-~aaaLpgvva~ 79 (165) ||++++ |+-.|...-+.+.+-++ ++|+++.+.- +. .+++..++.++.+.++++++||+... +..++.-+-.- T Consensus 1 KVa~l~~G~~~D~sfn~~~~~g~~~~~~~~g~~~~~~e-~~-~~~~~~~~~l~~~~~~g~dlIi~~g~~~~~~~~~vA~~ 78 (258) T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVE-NV-PEGADAERVLRELAAQGYDLIFGTSFGFMDAALKVAKE 78 (258) T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEE-CC-CCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHH T ss_conf 98999934999766889999999999998598699997-79-98789999999999759989999445766999999998 Q ss_pred HCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---------CCHHHHHHHHHHHH Q ss_conf 224203661257766675001699840356986204431675312289999999706---------99999999999999 Q gi|254780157|r 80 MTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILAL---------DDKELTDRLNEWRT 150 (165) Q Consensus 80 ~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~---------~d~~i~~kl~~~r~ 150 (165) + | +.. |.-.|+. .-++.+-..+... ..++|=|+++|+.+--. ..|.+..-+..|.+ T Consensus 79 y---P------d~~-F~~~~~~----~~~~Nv~~~~~~~-~e~~ylaG~~Aa~~tkt~kVG~Vgg~~~p~~~~~~~gf~~ 143 (258) T cd06353 79 Y---P------DVK-FEHCSGY----KTAPNVGSYFARI-YEGRYLAGVVAGKMTKTNKVGYVAAFPIPEVVRGINAFAL 143 (258) T ss_pred C---C------CCE-EEEECCC----CCCCCEEEEECCC-CHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH T ss_conf 8---9------988-9993488----6888747997231-0115799999998478984899778174788988999999 No 82 >PRK12939 short chain dehydrogenase; Provisional Probab=68.21 E-value=11 Score=19.29 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=33.7 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHHH Q ss_conf 988749999588169899999999999809------------------------98265453010387999988987653 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNARF 57 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~~ 57 (165) +++-||++|.|+.+ -+...+++.|-+.| .++....+ =-..++.+.+++++..+ T Consensus 4 ~L~~KvalVTGgs~--GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~-Dv~~~~~~~~~~~~~~~ 80 (250) T PRK12939 4 SLAGKRALVTGAAR--GLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA-DLADPASVQRFFDAAAA 80 (250) T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEE-CCCCHHHHHHHHHHHHH T ss_conf 99998799958366--8999999999987999999969889999999999955990999992-48999999999999999 Q ss_pred --CCCEEEEEEECCC Q ss_conf --5982999972676 Q gi|254780157|r 58 --EGFKLIIAGAGGA 70 (165) Q Consensus 58 --~~~~viIa~AG~a 70 (165) .+++++|-.||.. T Consensus 81 ~~g~iDiLVNNAG~~ 95 (250) T PRK12939 81 ALGGLDGLVNNAGIT 95 (250) T ss_pred HCCCCCEEEECCCCC T ss_conf 749997999887789 No 83 >cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail. Probab=68.05 E-value=12 Score=19.27 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=57.8 Q ss_pred EEEEECCCCCHHHH----HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-- Q ss_conf 99995881698999----999999998099826545301038799998898765359829999726766851134652-- Q gi|254780157|r 7 VAIIMGSQSDWKIM----KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-- 80 (165) Q Consensus 7 V~Ii~GS~SD~~~~----~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-- 80 (165) |++++.+-++ |+. +.+.+..++++ .+++.+..++-.+.+-.+.++++..++++.+|...--+.++...+.-. T Consensus 2 IGv~~~~~~n-pf~~~~~~gie~~A~~~~-g~~~~v~da~~d~~~Q~~~ie~li~~~vD~iiv~p~d~~~~~~~l~~a~~ 79 (270) T cd06308 2 IGFSQCNLAD-PWRAAMNDEIQREASNYP-DVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYR 79 (270) T ss_pred EEEEECCCCC-HHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 8999379989-799999999999999759-97899967989999999999999984999999964885200899999998 Q ss_pred CCCCEEEEC Q ss_conf 242036612 Q gi|254780157|r 81 TSLPVLGVP 89 (165) Q Consensus 81 t~~PVIgVP 89 (165) .-.|||.+= T Consensus 80 agIPVV~~d 88 (270) T cd06308 80 AGIPVILLD 88 (270) T ss_pred CCCCEEEEC T ss_conf 599199945 No 84 >PRK08862 short chain dehydrogenase; Provisional Probab=67.79 E-value=12 Score=19.24 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=20.9 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 99887499995881698999999999998099 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) |+++-||++|.|+.|- +...++..|.+.|- T Consensus 1 Mdlk~Kv~lITGas~G--IG~aiA~~~A~~Ga 30 (227) T PRK08862 1 MDIKNSIILITSAGSV--LGRTISCHFARLGA 30 (227) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCC T ss_conf 9999999999798879--99999999998799 No 85 >PRK10355 xylF D-xylose transporter subunit XylF; Provisional Probab=67.51 E-value=12 Score=19.20 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=61.0 Q ss_pred CCEEEEEECCCCCHHH--HH-HHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 8749999588169899--99-99999998099826545301038799998898765359829999726766851134652 Q gi|254780157|r 4 APPVAIIMGSQSDWKI--MK-YAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~--~~-~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) ..+|++.|.+.+.--+ ++ ...+..++.|++ +.+..|.-.+..=.+-++++..++++++|...--+.++..++..- T Consensus 25 ~~~IGv~~~~~~~~~~~~~~~~~~~~Ake~G~~--v~v~dA~~D~~~Qi~qIe~~I~qgvdaIiv~p~D~~al~~~v~~A 102 (330) T PRK10355 25 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAK--VFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEA 102 (330) T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH T ss_conf 867999906888868999999999999975998--999718999899999999999859999999699878889999999 Q ss_pred --CCCCEEEECC Q ss_conf --2420366125 Q gi|254780157|r 81 --TSLPVLGVPI 90 (165) Q Consensus 81 --t~~PVIgVP~ 90 (165) --.|||.+=. T Consensus 103 ~~aGIPVI~~D~ 114 (330) T PRK10355 103 KQEGIKVLAYDR 114 (330) T ss_pred HHCCCEEEEECC T ss_conf 987994999578 No 86 >COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane] Probab=66.59 E-value=12 Score=19.08 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=60.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---HCCHHHHH----HHHHHHHHCCCE-EEEEEECCCCCCH Q ss_conf 887499995881698999999999998099826545301---03879999----889876535982-9999726766851 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---HRTPDRLI----EFAKNARFEGFK-LIIAGAGGAAHLP 74 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l~----~~~~~~~~~~~~-viIa~AG~aaaLp 74 (165) .+++++|+=.+---+.+.+++.+-|-.-.+=|--.-+.. -|+++.+. ++++....++++ ++|||.-.++.-- T Consensus 4 ~~~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al 83 (269) T COG0796 4 PQPPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVAL 83 (269) T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH T ss_conf 66818999789870899999999789986899814778999989999999999999999997299889996651789999 Q ss_pred HHHHHHCCCCEEEECCC Q ss_conf 13465224203661257 Q gi|254780157|r 75 GMIAAMTSLPVLGVPII 91 (165) Q Consensus 75 gvva~~t~~PVIgVP~~ 91 (165) --+-...+.|||||=|. T Consensus 84 ~~LR~~~~iPVvGviPa 100 (269) T COG0796 84 EDLREKFDIPVVGVIPA 100 (269) T ss_pred HHHHHHCCCCEEEECCC T ss_conf 99998679998995315 No 87 >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=66.46 E-value=12 Score=19.07 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=36.3 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC-------------------------CCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 9988749999588169899999999999809-------------------------982654530103879999889876 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLG-------------------------IDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g-------------------------I~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |+.+.||++|.|+.+- +...+++.|-+-| .++....+- -..++...++++.. T Consensus 1 M~~~~KValVTGgs~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~D-v~~~~~~~~~~~~~ 77 (259) T PRK12745 1 MKSTRPVALVTGGRRG--IGLGIALALAAGGFDLAINDRPDAEKLAATQQELRALGVEVIFFPAD-VADLSAHEATLDAA 77 (259) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHH T ss_conf 9999999999686789--99999999998799899997986678999999998449948999846-89999999999999 Q ss_pred HH--CCCEEEEEEECCC Q ss_conf 53--5982999972676 Q gi|254780157|r 56 RF--EGFKLIIAGAGGA 70 (165) Q Consensus 56 ~~--~~~~viIa~AG~a 70 (165) .+ ..++++|--||.. T Consensus 78 ~~~fg~iDiLVNNAG~~ 94 (259) T PRK12745 78 QDAWGRIDCLVNNAGVG 94 (259) T ss_pred HHHHCCCCEEEECCCCC T ss_conf 99829988999847536 No 88 >PRK08277 D-mannonate oxidoreductase; Provisional Probab=66.34 E-value=12 Score=19.05 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=36.0 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC------------------------CEEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 99887499995881698999999999998099------------------------826545301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI------------------------DYEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI------------------------~~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) ++++-||++|.|+.+- +...+++.|.+.|- ... .+..=-..++.+.+..+... T Consensus 6 f~L~gKvalVTGas~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~-~~~~Dvtd~~~v~~~~~~~~ 82 (278) T PRK08277 6 FSLKGKVAVITGGGGV--LGGAMAKELARAGAKVAILDRNQEKAEAVVEEIKANGGEAI-ALKADVLDKESLEQARQQIL 82 (278) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHHHHHHHH T ss_conf 3889998999586748--99999999998799899997988999999999984599099-99824899999999999999 Q ss_pred H--CCCEEEEEEECC Q ss_conf 3--598299997267 Q gi|254780157|r 57 F--EGFKLIIAGAGG 69 (165) Q Consensus 57 ~--~~~~viIa~AG~ 69 (165) + ..++++|-.||. T Consensus 83 ~~~G~iDiLVNnAG~ 97 (278) T PRK08277 83 KDFGRCDILINGAGG 97 (278) T ss_pred HHHCCCCEEEECCCC T ss_conf 984998889988987 No 89 >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes Probab=65.53 E-value=13 Score=18.95 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=47.5 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEE Q ss_conf 99588169899999999999809982654530103879999889876535982999972676685113465224203661 Q gi|254780157|r 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGV 88 (165) Q Consensus 9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgV 88 (165) |++=|.++=|...++...|+..||+|...-..-.....++.++++.. .+..+.|.|=+ T Consensus 2 VvIysk~~Cp~C~~ak~lL~~~~i~~~~~~~d~~~~~~~~~~~l~~~----------------------~g~~TvPqIfi 59 (82) T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQEL----------------------TGQRTVPNVFI 59 (82) T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH----------------------CCCCCCCEEEE T ss_conf 89997388876999999999849980699646564399999999984----------------------39998886999 Q ss_pred CCCCCCCCCCCCHHHHHH Q ss_conf 257766675001699840 Q gi|254780157|r 89 PIISQTLGGIDSLLSIVQ 106 (165) Q Consensus 89 P~~~~~~~G~dallS~vq 106 (165) .+...+|.|-|..+.+ T Consensus 60 --~g~~IGG~~~l~~l~~ 75 (82) T cd03419 60 --GGKFIGGCDDLMALHK 75 (82) T ss_pred --CCEEECCHHHHHHHHH T ss_conf --9989847899999998 No 90 >pfam02016 Peptidase_S66 LD-carboxypeptidase. Muramoyl-tetrapeptide carboxypeptidase hydrolyses a peptide bond between a di-basic amino acid and the C-terminal D-alanine in the tetrapeptide moiety in peptidoglycan. This cleaves the bond between an L- and a D-amino acid. The function of this activity is in murein recycling. This family also includes the microcin c7 self-immunity protein. This family corresponds to Merops family S66. Probab=65.40 E-value=13 Score=18.94 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=46.4 Q ss_pred EEEEE-CCCCCHHHHHHHHHHHHHCCCCEEEE--EEE-----HHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 99995-88169899999999999809982654--530-----10387999988987653598299997267668 Q gi|254780157|r 7 VAIIM-GSQSDWKIMKYAADMLDTLGIDYEAR--IIS-----AHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH 72 (165) Q Consensus 7 V~Ii~-GS~SD~~~~~~a~~~L~~~gI~~~~~--V~S-----AHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa 72 (165) |+|+. .|.-|....+++.+.|+.+|.+.... +.. +.-.-+|..++.+-..+.++++|+++-|+-++ T Consensus 1 I~iiaPS~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~d~~i~aI~~~rGGyga 74 (281) T pfam02016 1 IGIVAPSSPLDPERLERAIARLESLGLEVVVGPHALARDGYLAGTDEERAADLHAAFADPEIDAIICARGGYGA 74 (281) T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCH T ss_conf 97992899899999999999999599989878762444676479999999999998508998899992787658 No 91 >TIGR01357 aroB 3-dehydroquinate synthase; InterPro: IPR016037 The 3-dehydroquinate synthase (4.2.3.4 from EC) domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide (P07547 from SWISSPROT) . 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate . This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.; GO: 0003856 3-dehydroquinate synthase activity, 0009073 aromatic amino acid family biosynthetic process. Probab=65.03 E-value=13 Score=18.89 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=90.6 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---HCCHHHHHHHHHHHHHCCC---EEEEEEECC-CCCCHHHH Q ss_conf 7499995881698999999999998099826545301---0387999988987653598---299997267-66851134 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---HRTPDRLIEFAKNARFEGF---KLIIAGAGG-AAHLPGMI 77 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l~~~~~~~~~~~~---~viIa~AG~-aaaLpgvv 77 (165) -++.||.=.+..--+.++....++..|.+....++.+ +++.+.+.+..+.+-..+. +.+|++-|+ -+=|.|.| T Consensus 26 ~~~~~~~d~~v~~~~~~~~~~~~~~~g~~v~~~~~p~GE~~K~l~~~~~l~~~L~~~~~~R~~~i~~~GGGvvgDlaGFv 105 (361) T TIGR01357 26 SKLVIVTDETVADLYAEKLLEALQSAGFNVLVLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV 105 (361) T ss_pred CEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH T ss_conf 50799867456888888999999853875268870789874548889999999996588956478885453778789999 Q ss_pred HHHCC--CCEEEECCC---------CCC----CCCCCCHHHHHHCCCCCCCEEE---ECCCCCCHHHHH-HHHHHHHCCC Q ss_conf 65224--203661257---------766----6750016998403569862044---316753122899-9999970699 Q gi|254780157|r 78 AAMTS--LPVLGVPII---------SQT----LGGIDSLLSIVQMPAGVPVGTM---AIGQSGAINASL-LAVAILALDD 138 (165) Q Consensus 78 a~~t~--~PVIgVP~~---------~~~----~~G~dallS~vqMP~Gvpvatv---~vg~~~~~NAal-~A~~Il~~~d 138 (165) ||-=- .|+|.||+. +|+ +.+..++--+.-+|..|=+=+- ..+.. -+-.++ =+.+.=-+.| T Consensus 106 Aaty~RGi~~iqvPTTLLAmVDsSvGGKtGiN~~~gKNlIGaFy~P~~V~~D~~~L~TLP~~-E~~~G~AEviK~g~i~D 184 (361) T TIGR01357 106 AATYMRGIRFIQVPTTLLAMVDSSVGGKTGINFPLGKNLIGAFYQPKAVLIDPDFLKTLPER-ELRSGMAEVIKHGLIAD 184 (361) T ss_pred HHHHHHCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHCCCCHH-HHHCCCHHHHHHHHCCC T ss_conf 99996155826414047777653037641113788863042113774026501441588468-88644357788875189 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780157|r 139 KELTDRLNEWRTQQT 153 (165) Q Consensus 139 ~~i~~kl~~~r~~~~ 153 (165) +++++.|.++..... T Consensus 185 ~~~~~~l~~~~~~~~ 199 (361) T TIGR01357 185 AELFDELEKNEKLLL 199 (361) T ss_pred HHHHHHHHHHHHHHH T ss_conf 779988720067643 No 92 >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=64.88 E-value=13 Score=18.87 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=39.3 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHH Q ss_conf 9988749999588169899999999999809982654------------------------5301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~ 56 (165) |+.+-|+++|.|+.+.+ ...+++.|-+-|....+. +..=-+.++.+.++.++.. T Consensus 1 m~L~gK~vlITGgs~GI--G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (247) T PRK05565 1 MKLMGKVAIVTGASGGI--GRAIAELLAKEGAKVVIAYDKNEEAANELLEEIKEVGGDAIAVKADVSSEDDVENLVEQIV 78 (247) T ss_pred CCCCCCEEEEECCCCHH--HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf 99899889993784589--9999999998799899981799899999999999639908999835899999999999999 Q ss_pred HC--CCEEEEEEECCC Q ss_conf 35--982999972676 Q gi|254780157|r 57 FE--GFKLIIAGAGGA 70 (165) Q Consensus 57 ~~--~~~viIa~AG~a 70 (165) ++ .++++|..||.. T Consensus 79 ~~~g~iD~lVnnAg~~ 94 (247) T PRK05565 79 EKFGKIDILVNNAGIS 94 (247) T ss_pred HHCCCCCEEEECCCCC T ss_conf 9809984999899878 No 93 >PRK06123 short chain dehydrogenase; Provisional Probab=63.78 E-value=14 Score=18.74 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=33.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHHH- Q ss_conf 88749999588169899999999999809982654------------------------53010387999988987653- Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNARF- 57 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~~- 57 (165) |+.||++|.|+.+. +...+++.|.+.|....+. +..=-+..+.+.++.++..+ T Consensus 1 m~nKvalITGas~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (249) T PRK06123 1 MMRKVMIITGASRG--IGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRE 78 (249) T ss_pred CCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 99988999686879--9999999999879989998089878999999999964990999984799999999999999998 Q ss_pred -CCCEEEEEEECC Q ss_conf -598299997267 Q gi|254780157|r 58 -EGFKLIIAGAGG 69 (165) Q Consensus 58 -~~~~viIa~AG~ 69 (165) ..++++|--||. T Consensus 79 ~G~iDiLVnNAG~ 91 (249) T PRK06123 79 LGRLDALVNNAGI 91 (249) T ss_pred HCCCCEEEECCCC T ss_conf 2998789988855 No 94 >pfam10096 DUF2334 Uncharacterized protein conserved in bacteria (DUF2334). This domain, found in various hypothetical bacterial proteins, has no known function. Probab=63.76 E-value=14 Score=18.74 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=42.5 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCH-----------HHHHHHHHHHHHCCCEEEE Q ss_conf 16989999999999980998265453010387-----------9999889876535982999 Q gi|254780157|r 14 QSDWKIMKYAADMLDTLGIDYEARIISAHRTP-----------DRLIEFAKNARFEGFKLII 64 (165) Q Consensus 14 ~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p-----------~~l~~~~~~~~~~~~~viI 64 (165) .+|+..+++..+.|.+.+|||.+-++-.+..| ..+...++.+.++|-.++. T Consensus 12 ~~d~~~Lk~i~dyl~~~~IPf~va~IP~y~dp~~~~~~~l~~~~~fv~~Lry~~~rGG~I~l 73 (238) T pfam10096 12 LVDLEKLKEIADYLYKKGIPFIVAVIPVYKDPEGGYDNDLSDNKKFVDALRYLQARGGSIIL 73 (238) T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 88999999999999877998599977767878877003766768799999999974998999 No 95 >PRK00865 glutamate racemase; Provisional Probab=63.71 E-value=14 Score=18.73 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=54.5 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH-----HCCHHHHHH----HHHHHHHCCCE-EEEEEECCCCC Q ss_conf 887499995881698999999999998099826545301-----038799998----89876535982-99997267668 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA-----HRTPDRLIE----FAKNARFEGFK-LIIAGAGGAAH 72 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA-----HR~p~~l~~----~~~~~~~~~~~-viIa~AG~aaa 72 (165) |+..++|+=-+---+.+.++..+.|-...+-|- -.++ .|+.+.+.+ +++...+.+++ ++|||--.+++ T Consensus 1 ~~~pIGiFDSGvGGLtVl~~l~~~lP~e~~iY~--gD~a~~PYG~ks~~~I~~~~~~i~~~l~~~~~k~iViACNTasa~ 78 (262) T PRK00865 1 MNAPIGVFDSGVGGLTVLREIRRQLPDEHIIYV--GDTARFPYGEKSEEEIRERTLEIVEFLLEQGVKMLVIACNTASAV 78 (262) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEE--ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH T ss_conf 999789986898879999999997899998998--237889989899999999999999999977998999816737899 Q ss_pred CHHHHHHHCCCCEEEECC Q ss_conf 511346522420366125 Q gi|254780157|r 73 LPGMIAAMTSLPVLGVPI 90 (165) Q Consensus 73 Lpgvva~~t~~PVIgVP~ 90 (165) --..+-.....||||+=| T Consensus 79 al~~lr~~~~iPiiGi~P 96 (262) T PRK00865 79 ALEDLRERLDIPVVGIVP 96 (262) T ss_pred HHHHHHHHCCCCEEEECH T ss_conf 999999647997798448 No 96 >cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids. Probab=62.83 E-value=14 Score=18.63 Aligned_cols=121 Identities=13% Similarity=0.209 Sum_probs=63.9 Q ss_pred CEEEEEECCCCCHHHHHHHHHHH----HHCCCC-------------EEEE----------------EEEH-----HCCHH Q ss_conf 74999958816989999999999----980998-------------2654----------------5301-----03879 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADML----DTLGID-------------YEAR----------------IISA-----HRTPD 46 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L----~~~gI~-------------~~~~----------------V~SA-----HR~p~ 46 (165) +|++|+.++ -|-|-|+.+...+ ...|++ -++. +..- .++++ T Consensus 1 KrIaIltsG-Gd~pGmNa~Ir~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LgtsR~~~~~~~~ 79 (317) T cd00763 1 KRIGVLTSG-GDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDEE 79 (317) T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 959999578-8856889999999999987899999982567787079816289999987986599501467787545567 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCHHH-HHHHCCCCEEEECCCCC-------CCCCC-----------CCHHHHHHC Q ss_conf 999889876535982999972676685113-46522420366125776-------66750-----------016998403 Q gi|254780157|r 47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGM-IAAMTSLPVLGVPIISQ-------TLGGI-----------DSLLSIVQM 107 (165) Q Consensus 47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgv-va~~t~~PVIgVP~~~~-------~~~G~-----------dallS~vqM 107 (165) ...+..++.+..+++.+|.+-|-.. +-+. .-+.-..||||+|-.-+ +--|+ |.+.++.+- T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGGdgS-~~~a~~l~e~~i~vigIPkTIDNDi~gtd~t~GfdTAv~~~~~aid~i~~ta~s 158 (317) T cd00763 80 GQAKAIEQLKKHGIDALVVIGGDGS-YMGAMRLTEHGFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTSSS 158 (317) T ss_pred HHHHHHHHHHHHCCCEEEEECCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 8999999999829998999569458-999999997499779713544678888787868899999999999999998505 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHH Q ss_conf 5698620443167531228999999 Q gi|254780157|r 108 PAGVPVGTMAIGQSGAINASLLAVA 132 (165) Q Consensus 108 P~Gvpvatv~vg~~~~~NAal~A~~ 132 (165) +..+-+.-+ .|. +++++|.. T Consensus 159 ~~rv~ivEv-MGR----~aG~lAl~ 178 (317) T cd00763 159 HQRISVVEV-MGR----HCGDIALA 178 (317) T ss_pred CCCEEEEEE-CCC----CCHHHHHH T ss_conf 787699996-897----60189998 No 97 >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein Probab=62.81 E-value=14 Score=18.63 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=33.8 Q ss_pred CCEEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 87499995881698999---99999999809982654530103879999889876 Q gi|254780157|r 4 APPVAIIMGSQSDWKIM---KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~---~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) +.+|++.|=|+-|.|.+ ..+...|++.|++|...=.-.+ | .+.++++.. T Consensus 7 ~~~vvvF~Kgt~~~P~C~f~~~a~~lL~~~~v~~~~~dv~~d--~-~~r~~l~~~ 58 (90) T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--E-EVRQGLKEY 58 (90) T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECCHHCC--H-HHHHHHHHH T ss_conf 098899957988998887799999999996899741330058--9-999999997 No 98 >cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun Probab=62.21 E-value=15 Score=18.56 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=53.5 Q ss_pred HHHHHHHHCCCCEEEEEEEHHC-----------------------C-----HHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 9999999809982654530103-----------------------8-----79999889876535982999972676685 Q gi|254780157|r 22 YAADMLDTLGIDYEARIISAHR-----------------------T-----PDRLIEFAKNARFEGFKLIIAGAGGAAHL 73 (165) Q Consensus 22 ~a~~~L~~~gI~~~~~V~SAHR-----------------------~-----p~~l~~~~~~~~~~~~~viIa~AG~aaaL 73 (165) =|.+.|++|||...-+|.+... . .+++.++++++..++. .| T Consensus 132 iAk~~L~~~gI~i~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~gD-----------Sl 200 (344) T cd07304 132 VAKKLLKEFGIEVVAHVKSIGGIEDEPFDLDEEELLEEAEESPVRCPDPEAEEKMKELIDEAKKEGD-----------SV 200 (344) T ss_pred HHHHHHHHCCCEEEEEEEEECCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC-----------CC T ss_conf 9999998779699999996889876766765377898875498779898999999999999854499-----------98 Q ss_pred HHHHHHHCCCCEEEECCCCCC--CCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 113465224203661257766--67500169984035698620443167531228999999970699 Q gi|254780157|r 74 PGMIAAMTSLPVLGVPIISQT--LGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD 138 (165) Q Consensus 74 pgvva~~t~~PVIgVP~~~~~--~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d 138 (165) . +....=+-|||+--|. ++.+|+.|+-.-| ++| |+-+|-++.|| -++++.+... T Consensus 201 G----G~ve~~~~gvP~GLG~p~f~kLda~La~alm--SIp-AvKgVEfG~Gf----~~a~~~GSe~ 256 (344) T cd07304 201 G----GVVEVVATGVPAGLGSPVFDKLDARLAQALM--SIP-AVKGVEIGSGF----EAARMRGSEV 256 (344) T ss_pred C----CEEEEEEECCCCCCCCHHCCCCHHHHHHHHH--CCC-CEEEEEECCHH----HHHHCCCCCC T ss_conf 7----2899999788989885100621589999873--657-52379964426----5653665200 No 99 >cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M Probab=62.12 E-value=15 Score=18.55 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=49.4 Q ss_pred EEEEEECCC----CCHHHHHHHHHHHHHCCCCEEEE--EEEHH-----CCHHHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 499995881----69899999999999809982654--53010-----387999988987653598299997267668 Q gi|254780157|r 6 PVAIIMGSQ----SDWKIMKYAADMLDTLGIDYEAR--IISAH-----RTPDRLIEFAKNARFEGFKLIIAGAGGAAH 72 (165) Q Consensus 6 kV~Ii~GS~----SD~~~~~~a~~~L~~~gI~~~~~--V~SAH-----R~p~~l~~~~~~~~~~~~~viIa~AG~aaa 72 (165) +|+|+.=|. ++.+..+.+.+.|+.+|.+..+. +..-| -.-+|..++.+-..+..++.|+++-|+.++ T Consensus 2 ~I~ivAPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGGyga 79 (308) T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDS 79 (308) T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCH T ss_conf 699996898776425999999999999699989878760234675579989999999998629998999991787778 No 100 >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated Probab=62.06 E-value=15 Score=18.54 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=19.5 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 99887499995881698999999999998099 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) |+.+-||++|.|+.+ -+...+++.|-+.|. T Consensus 7 ~~L~gKvalVTGas~--GIG~aia~~la~~Ga 36 (255) T PRK06113 7 LRLDGKCAIITGAGA--GIGKEIAITFATAGA 36 (255) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCC T ss_conf 679999899958877--899999999998799 No 101 >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=61.94 E-value=15 Score=18.53 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=33.8 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH Q ss_conf 998874999958816989999999999980998265453010387999988987653 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF 57 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~ 57 (165) |+++-|+++|.|+.+ -+...++..|-+.|-.. .-.-|+++++.+..++.+. T Consensus 1 m~l~gK~~lVTGas~--GIG~aiA~~la~~Ga~V----~i~~r~~~~l~~~~~~l~~ 51 (238) T PRK05786 1 MRLKGKNVLIVGVSP--GLGYAVAYFALREGASV----YAFARSEEKLKEIKKTLAK 51 (238) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEE----EEEECCHHHHHHHHHHHHC T ss_conf 987998899928987--89999999999879999----9996988999999998743 No 102 >PRK08085 gluconate 5-dehydrogenase; Provisional Probab=61.88 E-value=15 Score=18.52 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=17.7 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 99887499995881698999999999998099 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) ++.+-||++|.|+.+ -+...+++.|-+.|- T Consensus 5 ~~L~gK~alVTG~~~--GIG~aiA~~la~~Ga 34 (254) T PRK08085 5 FSLAGKNILITGSAQ--GIGFLLATGLAEYGA 34 (254) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCC T ss_conf 289999899968567--899999999998699 No 103 >PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=61.81 E-value=15 Score=18.52 Aligned_cols=89 Identities=21% Similarity=0.205 Sum_probs=51.9 Q ss_pred CCCCCEEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHH-HHHCCCEEEEEEECCCCCCHHHH Q ss_conf 99887499995--8816989999999999980998265453010387999988987-65359829999726766851134 Q gi|254780157|r 1 MNIAPPVAIIM--GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKN-ARFEGFKLIIAGAGGAAHLPGMI 77 (165) Q Consensus 1 m~~~pkV~Ii~--GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~-~~~~~~~viIa~AG~aaaLpgvv 77 (165) |+.=.+|+|+. ++..=...+++..+.|++-|+++-+.--++...+..-.+.... ...+.++.+|+. |+.+.+-.+. T Consensus 1 m~~~k~vgIv~k~~~~~a~~~~~~l~~~L~~~gi~v~ld~~~a~~~~~~~~~~~~~~~~~~~~Dlii~l-GGDGT~L~~~ 79 (296) T PRK01231 1 MEQFRNIGLIGRLGSSQVVETLRRLKRFLLDRHLHVILEEETAEVLPGHGLQTVSRKLLGEVCDLVIVV-GGDGSLLGAA 79 (296) T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHCCCCEEEEEEE-CCCCHHHHHH T ss_conf 999989999984898799999999999998788999993247766587886624533416530499995-7872899999 Q ss_pred HH--HCCCCEEEECC Q ss_conf 65--22420366125 Q gi|254780157|r 78 AA--MTSLPVLGVPI 90 (165) Q Consensus 78 a~--~t~~PVIgVP~ 90 (165) -- ....||+|+=. T Consensus 80 ~~~~~~~~PilGiN~ 94 (296) T PRK01231 80 RALARHNVPVLGINR 94 (296) T ss_pred HHHCCCCCCEEEEEC T ss_conf 996036997898855 No 104 >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. Probab=61.55 E-value=15 Score=18.49 Aligned_cols=85 Identities=15% Similarity=0.288 Sum_probs=59.3 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEEEEHHCCH-------------------------------------H Q ss_conf 74999958816989999999999980-998265453010387-------------------------------------9 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTL-GIDYEARIISAHRTP-------------------------------------D 46 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~-gI~~~~~V~SAHR~p-------------------------------------~ 46 (165) +||+++.|+-.|.-.+.+....|++- ++++.+-+.+-|-.+ . T Consensus 1 kKI~~v~GtRpe~iklapli~~l~~~~~~~~~li~TGqH~~~~~g~t~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365) T TIGR03568 1 KKICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGL 80 (365) T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 94999985077299999999999728998889999077784110708999997579876557654568985339999999 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-CCCCEEEEC Q ss_conf 9998898765359829999726766851134652-242036612 Q gi|254780157|r 47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-TSLPVLGVP 89 (165) Q Consensus 47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-t~~PVIgVP 89 (165) -+.++.+..+...++++++.......|++.+++. -..||+-+= T Consensus 81 ~~~~~~~~l~~~kPD~VlV~GDt~stla~alaA~~~~Ipv~Hve 124 (365) T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIH 124 (365) T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEE T ss_conf 99999999854399899994898607799999998198189996 No 105 >PRK05875 short chain dehydrogenase; Provisional Probab=61.52 E-value=15 Score=18.48 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=25.1 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE Q ss_conf 9988749999588169899999999999809982 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDY 34 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~ 34 (165) |+++-|+++|.|+.+ -+...++..|.+.|... T Consensus 3 l~L~gK~alVTGas~--GIG~aiA~~la~~Ga~V 34 (277) T PRK05875 3 LSLQDRTYLVTGGGS--GIGKGVAAALVAAGAAV 34 (277) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEE T ss_conf 468999899948874--99999999999879989 No 106 >PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional Probab=61.48 E-value=15 Score=18.48 Aligned_cols=70 Identities=14% Similarity=0.255 Sum_probs=28.8 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEE Q ss_conf 99588169899999999999809982654530103879999889876535982999972676685113465224203661 Q gi|254780157|r 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGV 88 (165) Q Consensus 9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgV 88 (165) ++.||..|.+.++++...+..-.-+.-...++- -+..++..+++ .++++|+...+--||+. -...|+|++ T Consensus 217 vl~G~~~e~~~~~~i~~~l~~~~~~~~~nl~Gk-tsL~el~ali~-----~a~l~I~nDSGpmHlAa----A~g~P~val 286 (348) T PRK10916 217 VLFGSAKDHEAGNEILAALNTEQQAWCRNLAGE-TQLEQAVILIA-----ACKAIVTNDSGLMHVAA----ALNRPLVAL 286 (348) T ss_pred EEEECHHHHHHHHHHHHHHHHHCCCCEECCCCC-CCHHHHHHHHH-----HCCEEEECCCHHHHHHH----HCCCCEEEE T ss_conf 998172369999999985103315651416788-99999999998-----55987844882899999----809988999 No 107 >PRK07326 short chain dehydrogenase; Provisional Probab=61.07 E-value=16 Score=18.43 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=39.8 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------------E-EEEHHCCHHHHHHHHHHHHH-- Q ss_conf 998874999958816989999999999980998265--------------------4-53010387999988987653-- Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA--------------------R-IISAHRTPDRLIEFAKNARF-- 57 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~--------------------~-V~SAHR~p~~l~~~~~~~~~-- 57 (165) |+.+-||++|.|+.| -+...+++.|.+.|....+ . +..=-+.++.+.+.++...+ T Consensus 1 M~~~GKvalITGas~--GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~ 78 (235) T PRK07326 1 MSGNGKAALVTGGSK--GIGFAVAEALAAAGYRVAICARDESELEAAAQELGKRNVLGLACDVRDEADVRQAVDAHVEAF 78 (235) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHC T ss_conf 999998999938267--999999999998799999998988999999998423986999963899999999999999982 Q ss_pred CCCEEEEEEECCC Q ss_conf 5982999972676 Q gi|254780157|r 58 EGFKLIIAGAGGA 70 (165) Q Consensus 58 ~~~~viIa~AG~a 70 (165) ..++++|.-||.. T Consensus 79 G~iDiLVNNAGi~ 91 (235) T PRK07326 79 GGLDILVNNAGVG 91 (235) T ss_pred CCCEEEEECCCCC T ss_conf 9966999888778 No 108 >COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism] Probab=60.84 E-value=16 Score=18.41 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=66.4 Q ss_pred CCEEEEEECCCCCHH---------HHH----HHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 874999958816989---------999----9999999809982654530103879999889876535982999972676 Q gi|254780157|r 4 APPVAIIMGSQSDWK---------IMK----YAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA 70 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~---------~~~----~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~a 70 (165) +|||+||+-++-=.+ +.+ -....|+++|.+....=.-.| .++.+.+.++++.++ ++++|+-.|-| T Consensus 176 kprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~D-d~~~l~~~i~~a~~~-~DviItsGG~S 253 (404) T COG0303 176 KPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPD-DPEALREAIEKALSE-ADVIITSGGVS 253 (404) T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHHHC-CCEEEEECCCC T ss_conf 8889999058545588888999858736799999999975992453353599-989999999977524-99999969866 Q ss_pred C----CCHHHHHH-HCCCCEEEECCCCCCCCCCCCHHHH-HHCCCCCCCEEE Q ss_conf 6----85113465-2242036612577666750016998-403569862044 Q gi|254780157|r 71 A----HLPGMIAA-MTSLPVLGVPIISQTLGGIDSLLSI-VQMPAGVPVGTM 116 (165) Q Consensus 71 a----aLpgvva~-~t~~PVIgVP~~~~~~~G~dallS~-vqMP~Gvpvatv 116 (165) . +++-++.. +=..=+-|++..-|...++.-+--. +=+.||.|++.. T Consensus 254 vG~~D~v~~~l~~~lG~v~~~gia~kPGkP~~~g~~~~~~v~gLPGnPvSal 305 (404) T COG0303 254 VGDADYVKAALERELGEVLFHGVAMKPGKPTGLGRLGGKPVFGLPGNPVSAL 305 (404) T ss_pred CCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCEEEECCCCHHHHH T ss_conf 7614669999984389379976660699845999989978998988779999 No 109 >PRK12935 acetoacetyl-CoA reductase; Provisional Probab=60.54 E-value=16 Score=18.37 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=34.2 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHH Q ss_conf 9988749999588169899999999999809982654------------------------5301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~ 56 (165) |+++-||++|.|+.+ -+...++..|-+-|-..-+. +..=-..++.+.+++++.. T Consensus 2 ~~L~gKvalVTG~s~--GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~~~~~v~~~~ 79 (247) T PRK12935 2 VQLNGKVAIVTGGAK--GIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAV 79 (247) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf 988969899917276--899999999998799899976999899999999998439958999857999999999999999 Q ss_pred H--CCCEEEEEEECCC Q ss_conf 3--5982999972676 Q gi|254780157|r 57 F--EGFKLIIAGAGGA 70 (165) Q Consensus 57 ~--~~~~viIa~AG~a 70 (165) + ..++++|.-||.. T Consensus 80 ~~~G~iDiLVNNAGi~ 95 (247) T PRK12935 80 NHFGKVDILVNNAGIT 95 (247) T ss_pred HHCCCCCEEEECCCCC T ss_conf 9839998999899889 No 110 >PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Probab=60.15 E-value=16 Score=18.33 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=50.5 Q ss_pred EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-------CCCCEEEECCCCC-------CCCCC----- Q ss_conf 5301038799998898765359829999726766851134652-------2420366125776-------66750----- Q gi|254780157|r 38 IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-------TSLPVLGVPIISQ-------TLGGI----- 98 (165) Q Consensus 38 V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-------t~~PVIgVP~~~~-------~~~G~----- 98 (165) +.+--|.+....+++++++..+++.++++ |+.+.|-|+..=. ...+|||+|-.-. .--|+ T Consensus 150 ILGsSRg~~d~~~ivd~l~~~gid~L~~I-GGDGTl~gA~~i~~e~~~rgl~I~VvGIPKTIDNDi~~~d~sfGF~TAv~ 228 (442) T PRK06830 150 ILGSSRGPQDPVEIVDTLERMNINILFVI-GGDGTLKGALKIAEEIARRNLKISVVGIPKTIDNDINFIQKSFGFETAVE 228 (442) T ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEEEE-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEECHHHHHH T ss_conf 89608999898999999998399989994-88027899999999999638994077456433477543031312461999 Q ss_pred ------CCHHHHHH-CCCCCCCEEEECCCCCCH Q ss_conf ------01699840-356986204431675312 Q gi|254780157|r 99 ------DSLLSIVQ-MPAGVPVGTMAIGQSGAI 124 (165) Q Consensus 99 ------dallS~vq-MP~Gvpvatv~vg~~~~~ 124 (165) |++..+.+ -+.|+-+.-+ .|.+.|+ T Consensus 229 ~a~~ai~~~~~eA~s~~~gvg~v~l-MGR~sG~ 260 (442) T PRK06830 229 KATEAIACAHVEAKGAPNGIGLVKL-MGRHSGF 260 (442) T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEE-CCCCHHH T ss_conf 9999999998776515785599998-3664308 No 111 >cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=59.59 E-value=16 Score=18.27 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=57.9 Q ss_pred EEEEECCC-C--CHHHH-HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-- Q ss_conf 99995881-6--98999-999999998099826545301038799998898765359829999726766851134652-- Q gi|254780157|r 7 VAIIMGSQ-S--DWKIM-KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-- 80 (165) Q Consensus 7 V~Ii~GS~-S--D~~~~-~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-- 80 (165) +++++.+- | =+..+ +.+.+..+++|++. .+.+++..+.+-.+.++++..++++.||....-..++...+... T Consensus 2 Ig~~~~~~~~~pf~~~~~~g~e~~A~~~G~~~--~v~~~~~d~~~q~~~i~~~i~~~vd~Iii~p~d~~~~~~~i~~a~~ 79 (275) T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVEV--IVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ 79 (275) T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE--EEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 78977888898699999999999999769989--9977999999999999999975999999967871245799999998 Q ss_pred CCCCEEEE Q ss_conf 24203661 Q gi|254780157|r 81 TSLPVLGV 88 (165) Q Consensus 81 t~~PVIgV 88 (165) .-.|||.+ T Consensus 80 agIpVv~~ 87 (275) T cd06317 80 AGIPVVIT 87 (275) T ss_pred CCCEEEEE T ss_conf 69949997 No 112 >PRK07479 consensus Probab=59.38 E-value=17 Score=18.25 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=40.4 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC------------------------EEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 998874999958816989999999999980998------------------------26545301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID------------------------YEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~------------------------~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) |+++-||++|.|+.+- +...+++.|-+.|.. +.. +..=-+.++.+.+..+... T Consensus 1 m~L~gK~alITGgs~G--IG~a~a~~la~~G~~V~i~~~~~~~~~~~~~~l~~~g~~~~~-~~~Dv~~~~~~~~~~~~~~ 77 (252) T PRK07479 1 MRLSGKVAIVTGAGSG--FGEGIAKRFAREGAKVVVADLNAAAAERVASEIADAGGNAIA-VAADVSRGADVEALVEAAL 77 (252) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHH T ss_conf 9879988999388768--999999999987999999979899999999999853997899-9925899999999999999 Q ss_pred H--CCCEEEEEEECCC Q ss_conf 3--5982999972676 Q gi|254780157|r 57 F--EGFKLIIAGAGGA 70 (165) Q Consensus 57 ~--~~~~viIa~AG~a 70 (165) + ..++++|..||.. T Consensus 78 ~~~G~iD~lVnnAG~~ 93 (252) T PRK07479 78 EAFGRVDIVVNNAGTT 93 (252) T ss_pred HHHCCCCEEEECCCCC T ss_conf 9819985999899766 No 113 >PRK12743 acetoin dehydrogenase; Provisional Probab=59.21 E-value=17 Score=18.23 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=26.8 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC Q ss_conf 6989999999999980998265453010387999988987653--5982999972676 Q gi|254780157|r 15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA 70 (165) Q Consensus 15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a 70 (165) +|..-.++..+.++.+|..+....+ =-..++...++++...+ .+++++|-.||.. T Consensus 35 ~~~~~~~~~~~~~~~~g~~~~~~~~-Dv~~~~~~~~~~~~~~~~~G~iDilVNnAG~~ 91 (253) T PRK12743 35 SDEEGAKETAEEVVSHGVRAEIVHL-DLSNLPEGAQAIEKLIQRLGRLDVLVNNAGAM 91 (253) T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 9979999999999945991899990-48999999999999999819998999899899 No 114 >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. Probab=59.02 E-value=17 Score=18.21 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=11.1 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCC Q ss_conf 49999588169899999999999809 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLG 31 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~g 31 (165) +|.|.+|++-......++.+.|.+.. T Consensus 173 ~Ili~~GGsD~~~lt~~il~~l~~~~ 198 (280) T TIGR03590 173 RVLVSFGGADPDNLTLKLLSALAESQ 198 (280) T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 28999778770008999999998516 No 115 >PRK09730 hypothetical protein; Provisional Probab=58.71 E-value=17 Score=18.17 Aligned_cols=54 Identities=7% Similarity=0.078 Sum_probs=25.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC Q ss_conf 989999999999980998265453010387999988987653--5982999972676 Q gi|254780157|r 16 DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA 70 (165) Q Consensus 16 D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a 70 (165) +.+-+++..+.+++.|..+... -.=-..++.+.++.+...+ ..++++|--||.. T Consensus 35 ~~~~~~~~~~~~~~~g~~~~~~-~~Dv~~~~~v~~~~~~i~~~~g~id~LVNNAG~~ 90 (247) T PRK09730 35 NLHAAQEVVNLITQAGGKAFVL-QADISDENQVVAMFTAIDQHDEPLAALVNNAGIL 90 (247) T ss_pred CHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 8789999999999749928999-8258999999999999999759955999898635 No 116 >PRK13138 consensus Probab=58.57 E-value=17 Score=18.16 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=61.7 Q ss_pred CHHH----HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC---CHHHHHHHCCCCEEEE Q ss_conf 9899----99999999980998265453010387999988987653598299997267668---5113465224203661 Q gi|254780157|r 16 DWKI----MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH---LPGMIAAMTSLPVLGV 88 (165) Q Consensus 16 D~~~----~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa---Lpgvva~~t~~PVIgV 88 (165) |+|+ .++-...+++.|++. +..++..-+.+|+.++.+.. +|.-.++...|-.+. ++.- T Consensus 126 DLP~e~~E~~~~~~~~~~~~i~~-I~liaPtt~~~Ri~~i~~~s--~gFiY~Vs~~GvTG~~~~~~~~------------ 190 (264) T PRK13138 126 DLPFDTPEAEEFFSQLERKKIDF-IHLVTPATTEDRIQSMKSFA--SGFIYYVTSYGVTGERGAIASG------------ 190 (264) T ss_pred CCCCCCHHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCHH------------ T ss_conf 89865033599999999869986-75217999899999999738--8808987545667876555376------------ Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHH------------HHHHHHHC---CCHHHHHHHHHHHHHHH Q ss_conf 2577666750016998403569862044316753122899------------99999706---99999999999999999 Q gi|254780157|r 89 PIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASL------------LAVAILAL---DDKELTDRLNEWRTQQT 153 (165) Q Consensus 89 P~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal------------~A~~Il~~---~d~~i~~kl~~~r~~~~ 153 (165) +..+...+.--..+|++. +.|+..+.-+.. .-++++.- ..+++.+++.+|-++++ T Consensus 191 ---------~~~~i~~ik~~t~~Pv~v-GFGIs~~e~~~~~~~~ADGvIVGSaiv~~i~~~~~~~~~~~~~v~~~~~~lk 260 (264) T PRK13138 191 ---------LEDRIQMVRKIVGLPVCA-GFGISTADQAKEISTYADGVIIGSAVQKIIEENGSDRENCADKLFAYASEIR 260 (264) T ss_pred ---------HHHHHHHHHHHCCCCEEE-EECCCCHHHHHHHHHCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf ---------999999999743898388-6067989999999834999998199999999727877789999999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780157|r 154 ISI 156 (165) Q Consensus 154 ~~v 156 (165) ..+ T Consensus 261 ~~~ 263 (264) T PRK13138 261 ASM 263 (264) T ss_pred HHH T ss_conf 963 No 117 >PRK10222 L-ascorbate-specific enzyme IIB component of PTS; Provisional Probab=58.37 E-value=7.2 Score=20.59 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=40.6 Q ss_pred HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEC Q ss_conf 999999998099826545301038799998898765359829999726766851134652242036612 Q gi|254780157|r 21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVP 89 (165) Q Consensus 21 ~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP 89 (165) .|+..+|++.||++.+.-||.- +|-. ...++++||+ |.||.+-+.+-+..-|+||- T Consensus 5 mKV~~~L~k~gi~~~~~SCavg-------d~K~--~l~~~DIIVa----S~HL~~Ei~~~~~~~vlGV~ 60 (85) T PRK10222 5 MKVDQFLTQSNIDHTVNSCAVG-------EYKS--ELSGADIIIA----STHIAGEITVTGNKYVVGVR 60 (85) T ss_pred HHHHHHHHHCCCCCHHHHHHHH-------HHHC--CCCCCCEEEE----CHHHHHHCCCCCCCEEEEHH T ss_conf 8899999982995210020356-------5543--4677778987----06657542678892688302 No 118 >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] Probab=58.24 E-value=17 Score=18.12 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=34.4 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 99588169899999999999809982654530103879999889876 Q gi|254780157|r 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |.+=+.+.=|....+...|++.|++|+......+.. ....++++.. T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~ 48 (80) T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRG 48 (80) T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHHHHH T ss_conf 799938999645999999997799709998378867-8999999971 No 119 >PRK07109 short chain dehydrogenase; Provisional Probab=58.08 E-value=17 Score=18.10 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=34.9 Q ss_pred CCCEEEEEECCCCCH----------------------HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--C Q ss_conf 887499995881698----------------------9999999999980998265453010387999988987653--5 Q gi|254780157|r 3 IAPPVAIIMGSQSDW----------------------KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--E 58 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~----------------------~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~ 58 (165) ++-||++|.|..|-+ .-.++..+.++..|-+... +..=-..++.+.+.++..++ . T Consensus 6 l~~KvVvITGASsGIGra~A~~fA~~Ga~Vvl~aR~~~~L~~~a~e~~~~G~~~~~-~~~DVsd~~~v~~~~~~~~~~~G 84 (338) T PRK07109 6 LGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEGLAAEIRAAGGEALA-VVADVADAEAVQAAADRAEEELG 84 (338) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE-EEEECCCHHHHHHHHHHHHHHHC T ss_conf 69898999484349999999999987998999989999999999999963981899-98017999999999999999849 Q ss_pred CCEEEEEEECCC Q ss_conf 982999972676 Q gi|254780157|r 59 GFKLIIAGAGGA 70 (165) Q Consensus 59 ~~~viIa~AG~a 70 (165) .++++|-.||.. T Consensus 85 ~IDvlVNNAGi~ 96 (338) T PRK07109 85 PIDTWVNNAMVT 96 (338) T ss_pred CCCEEEECCCCC T ss_conf 988886546667 No 120 >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional Probab=57.89 E-value=18 Score=18.08 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=45.9 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 99999999999809982654530103879999889876535982999972676685113465224203661257766675 Q gi|254780157|r 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGG 97 (165) Q Consensus 18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G 97 (165) -+....+..|.+-| ..|...|+....+.++.++ .|++|+++|....+.+-.--. --=||-|=+. ..+| T Consensus 39 ~VG~Pla~lL~~~~----atVt~~hs~t~~l~~~~~~-----ADIvI~a~G~p~~i~~~~vk~-GavvIDvGi~--~~~~ 106 (140) T cd05212 39 IVGAPLQCLLQRDG----ATVYSCDWKTIQLQSKVHD-----ADVVVVGSPKPEKVPTEWIKP-GATVINCSPT--KLSG 106 (140) T ss_pred HHHHHHHHHHHHCC----CEEEEECCCCCCHHHHHHH-----CCEEEECCCCCCCCCHHHCCC-CCEEEEECCC--CCCC T ss_conf 24999999999788----9899946999598998523-----499998168767278977679-9889980377--5677 Q ss_pred CCCHHH----HHHCCCCCCCEEE Q ss_conf 001699----8403569862044 Q gi|254780157|r 98 IDSLLS----IVQMPAGVPVGTM 116 (165) Q Consensus 98 ~dallS----~vqMP~Gvpvatv 116 (165) -+ ... .-.+|.|+.+.|+ T Consensus 107 ~~-v~~~a~~iTPVPGGVGP~Tv 128 (140) T cd05212 107 DD-VKESASLYVPMTGGVGKLTV 128 (140) T ss_pred HH-HHCEEEEECCCCCCCCHHHH T ss_conf 21-44165287789995469999 No 121 >PRK07478 short chain dehydrogenase; Provisional Probab=57.62 E-value=18 Score=18.06 Aligned_cols=67 Identities=25% Similarity=0.201 Sum_probs=34.8 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC------------------------EEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 998874999958816989999999999980998------------------------26545301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID------------------------YEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~------------------------~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) |.++-||++|.|+.+ -+...+++.|.+.|-. .... ..=-+.++.+.+.++... T Consensus 2 m~L~gKvalVTGas~--GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~ei~~~g~~~~~~-~~Dvt~~~~v~~~v~~~~ 78 (254) T PRK07478 2 MLLNGKVAIITGASS--GIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVAL-AGDVRDEAYAKALVALAV 78 (254) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHH T ss_conf 888998799958876--89999999999879999999798899999999999649908999-768999999999999999 Q ss_pred H--CCCEEEEEEECCC Q ss_conf 3--5982999972676 Q gi|254780157|r 57 F--EGFKLIIAGAGGA 70 (165) Q Consensus 57 ~--~~~~viIa~AG~a 70 (165) + ..++++|.-||.. T Consensus 79 ~~~G~iDiLVNNAG~~ 94 (254) T PRK07478 79 ERFGGLDIAFNNAGIL 94 (254) T ss_pred HHHCCCCEEEECCCCC T ss_conf 9849998999887436 No 122 >PRK13127 consensus Probab=57.34 E-value=18 Score=18.03 Aligned_cols=120 Identities=18% Similarity=0.282 Sum_probs=66.4 Q ss_pred CHHHH--HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCC---CCHHH-------HHHHCCC Q ss_conf 98999--999999998099826545301038799998898765359829999726766---85113-------4652242 Q gi|254780157|r 16 DWKIM--KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAA---HLPGM-------IAAMTSL 83 (165) Q Consensus 16 D~~~~--~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aa---aLpgv-------va~~t~~ 83 (165) |+|.- ++....+++.|++.. ..++.+-+.+|+.++.+.. +|.-.++...|-.+ .++.- +-.+|.. T Consensus 123 DLP~eE~~~~~~~~~~~gi~~I-~lvaPtt~~~Ri~~i~~~a--~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~ 199 (262) T PRK13127 123 DLPVEEATDLREACKKHGLDLV-FLVAPTTPEERLKRIDEAS--SGFVYLVSRLGVTGAREDVEEATFDLLKRARTTCKN 199 (262) T ss_pred CCCHHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 9997899999999985583279-9858999899999998438--981899843555687655528899999999961799 Q ss_pred CEEEECCCCCCCCCCCCHHHHHHC----CCCCCCEEEECCCCCCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 036612577666750016998403----569862044316753122899999997--06999999999999999999998 Q gi|254780157|r 84 PVLGVPIISQTLGGIDSLLSIVQM----PAGVPVGTMAIGQSGAINASLLAVAIL--ALDDKELTDRLNEWRTQQTISIS 157 (165) Q Consensus 84 PVIgVP~~~~~~~G~dallS~vqM----P~Gvpvatv~vg~~~~~NAal~A~~Il--~~~d~~i~~kl~~~r~~~~~~v~ 157 (165) || -.| -|+.+--..-++ .-|+= ||. | -+++| +..++++.+++.+|.+++++.+. T Consensus 200 Pv-----~vG--FGI~~~e~v~~~~~~~aDGvI-----VGS------a--iv~~i~~~~~~~~~~~~v~~~~~~lk~ai~ 259 (262) T PRK13127 200 KI-----AVG--FGISKGEHAEELLDAGADGVI-----VGS------A--LVDIIAEGGDNEEVADRLEELARELKSGIK 259 (262) T ss_pred CE-----EEE--EEECCHHHHHHHHHCCCCEEE-----ECH------H--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 84-----899--334889999999864999999-----878------9--999999669978999999999999999985 Q ss_pred H Q ss_conf 4 Q gi|254780157|r 158 E 158 (165) Q Consensus 158 ~ 158 (165) + T Consensus 260 ~ 260 (262) T PRK13127 260 R 260 (262) T ss_pred C T ss_conf 6 No 123 >PRK07035 short chain dehydrogenase; Provisional Probab=56.73 E-value=18 Score=17.96 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=20.2 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 99887499995881698999999999998099 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) ++++-||++|.|+.| -+...++..|.+.|. T Consensus 4 ~~L~gKvalITGas~--GIG~aia~~la~~Ga 33 (252) T PRK07035 4 FDLTGKIALVTGASR--GIGEAIAKLLAQQGA 33 (252) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCC T ss_conf 467899899958874--999999999998799 No 124 >PTZ00286 6-phospho-1-fructokinase; Provisional Probab=56.59 E-value=18 Score=17.95 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=55.5 Q ss_pred EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-------CCCCEEEECCCC-------CCCCCCCC--- Q ss_conf 5301038799998898765359829999726766851134652-------242036612577-------66675001--- Q gi|254780157|r 38 IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-------TSLPVLGVPIIS-------QTLGGIDS--- 100 (165) Q Consensus 38 V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-------t~~PVIgVP~~~-------~~~~G~da--- 100 (165) +.+--|.|....+++++.+..+++.++++ |+.+.+-|..+-. ...+|||+|-.- ..-.|+|. T Consensus 166 ILGTSRG~~d~~~iVd~L~~~gId~LfvI-GGDGTlrgA~~I~~e~~~Rgl~I~VVGIPKTIDNDI~~~D~TFGFdTAVe 244 (486) T PTZ00286 166 ILGSSRGPQDPKEMVDTLVRMKINILFTV-GGDGTQRGALKIYEEAKRRGENIAVFGVPKTIDNDLAFSHRTFGFQTAVE 244 (486) T ss_pred EEECCCCCCCHHHHHHHHHHCCCCEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHCCCCHHHHHH T ss_conf 98548999898999999998599989997-88466889999999999717885066468543576410010024023999 Q ss_pred --------HHHHHH-CCCCCCCEEEECCCCCCHHHHH Q ss_conf --------699840-3569862044316753122899 Q gi|254780157|r 101 --------LLSIVQ-MPAGVPVGTMAIGQSGAINASL 128 (165) Q Consensus 101 --------llS~vq-MP~Gvpvatv~vg~~~~~NAal 128 (165) .....+ -+.|+-+.-+ .|.+.||=|+. T Consensus 245 ~AteAI~~ah~EA~sa~nGIGlVkL-MGR~SGfIA~~ 280 (486) T PTZ00286 245 QAVNAVRAAYAEAVSLNYGVGIVKL-MGRESGFIAAQ 280 (486) T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHH T ss_conf 9999999998875235685189997-25551289988 No 125 >PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=56.47 E-value=19 Score=17.93 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=48.7 Q ss_pred EEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHH------HHHHHHHHCCCEEEEEEECCCCCCHHHH Q ss_conf 499995--88169899999999999809982654530103879999------8898765359829999726766851134 Q gi|254780157|r 6 PVAIIM--GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLI------EFAKNARFEGFKLIIAGAGGAAHLPGMI 77 (165) Q Consensus 6 kV~Ii~--GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~------~~~~~~~~~~~~viIa~AG~aaaLpgvv 77 (165) ||+|+. ....-.++.++....|++.|+++.+.--.+........ .+.+. +...++++|+ -|+.+.+-..+ T Consensus 2 KIaIigk~~~~~~~~~~~~Li~~L~~~g~~v~le~~~a~~l~~~~~~~~~~~~~~~~-~~~~~Dlvi~-iGGDGT~L~a~ 79 (290) T PRK01911 2 KIAIFGQTYQASKSPHIKRLFELLEEHGAEIYIEEEFLNFLTQDLKFEPKYKGFFDG-NNFDFDMVIS-IGGDGTFLRAA 79 (290) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCEEEE-ECCCHHHHHHH T ss_conf 999988889847999999999999988998999768978776512566431232113-5777779999-78768999999 Q ss_pred HH--HCCCCEEEECCC Q ss_conf 65--224203661257 Q gi|254780157|r 78 AA--MTSLPVLGVPII 91 (165) Q Consensus 78 a~--~t~~PVIgVP~~ 91 (165) -. ....|++|+-.- T Consensus 80 ~~~~~~~iPilGiN~G 95 (290) T PRK01911 80 ARVGNSGIPILGINTG 95 (290) T ss_pred HHHHHCCCCEEEEECC T ss_conf 9861259968999448 No 126 >PRK11574 hypothetical protein; Provisional Probab=56.28 E-value=13 Score=18.93 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=35.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE---------EEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 8874999958816989999999999980998265---------45301038799998898765359829999726 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA---------RIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~---------~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG 68 (165) |++||.|+..--+..-=+--..+.|++-|++..+ .|.+.|...-......++...+.++.+|-=-| T Consensus 1 M~kk~LV~lA~GfEEiEa~~~vDvLRRagi~V~~asv~~~~~~~v~gs~gi~i~aD~~l~~v~~~~yD~ivlPGG 75 (196) T PRK11574 1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLTITCSRGVKLLADAPLVEVADGEYDVIVLPGG 75 (196) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCEEECCCCHHHCCCCCCCEEECCCC T ss_conf 985699991698502125189999977798499998538997379947997895786777778255888991788 No 127 >PRK12937 short chain dehydrogenase; Provisional Probab=55.54 E-value=19 Score=17.84 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=40.4 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHH Q ss_conf 9988749999588169899999999999809982654------------------------5301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~ 56 (165) |+.+-|+++|.|+++ -+...+++.|-+.|...-+. +..=-+.++.+.++++... T Consensus 1 M~~sgK~alVTGgs~--GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~ 78 (245) T PRK12937 1 MTDSNKVAIVTGASR--GIGAAIARRLAADGFAVAVNYAGSAAMADELVEEIEAAGGRAIAVQADVADAAAVDRLFEAAE 78 (245) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf 999998899948577--899999999998799999976998689999999999659958999837899999999999999 Q ss_pred H--CCCEEEEEEECCC Q ss_conf 3--5982999972676 Q gi|254780157|r 57 F--EGFKLIIAGAGGA 70 (165) Q Consensus 57 ~--~~~~viIa~AG~a 70 (165) + ..++++|-.||.. T Consensus 79 ~~~g~iDilVnNAg~~ 94 (245) T PRK12937 79 TAFGRIDVLVNSAGIM 94 (245) T ss_pred HHHCCCCEEEEECCCC T ss_conf 9819988999805489 No 128 >pfam02608 Bmp Basic membrane protein. This is a family of basic membrane lipoproteins form Borrelia and various putative lipoproteins form other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family. One protein, Bacillus subtilis med, is a transcriptional activator. Probab=55.43 E-value=19 Score=17.83 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=62.9 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHH--HC--CCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH Q ss_conf 9988749999588169899999999999--80--9982654530103879999889876535982999972676685113 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLD--TL--GIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM 76 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~--~~--gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv 76 (165) |..+-+|+.+-|-+...-.--.....+- .. .++..+....-.-.|..-.+....+.+.|++||-.+||.++ .|+ T Consensus 122 ~tkt~~vG~vgG~~~p~i~~f~~GF~~Ga~~~npdi~v~~~y~gsf~D~~k~k~~A~~~~~~GaDVI~~~ag~~g--~Gv 199 (302) T pfam02608 122 MSKTNKIGFVGGMEIPVVLSFIYGFEAGAKYVNPDIEVVVKYAGTFSDSAKGKALASSLYKEGVDVIYPAAGLTG--IGV 199 (302) T ss_pred HCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC--HHH T ss_conf 158774699911253766745999999999719996299999089687689999999999759989998889887--899 Q ss_pred HHHHCC----CCEEEECCCCCCCC Q ss_conf 465224----20366125776667 Q gi|254780157|r 77 IAAMTS----LPVLGVPIISQTLG 96 (165) Q Consensus 77 va~~t~----~PVIgVP~~~~~~~ 96 (165) +.+--. ..+|||-.+...+. T Consensus 200 ~~aa~e~g~~~~~IGvd~dq~~~~ 223 (302) T pfam02608 200 IQAAKELGLYGYVIGVDQDQSYLA 223 (302) T ss_pred HHHHHHCCCCCEEEEEECCCCCCC T ss_conf 999997199826999967655237 No 129 >COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] Probab=55.21 E-value=19 Score=17.80 Aligned_cols=118 Identities=21% Similarity=0.228 Sum_probs=73.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCE Q ss_conf 49999588169899999999999809982654530103879999889876535982999972676685113465224203 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPV 85 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PV 85 (165) |-.+|.|||- .+...+-+.+++++-.|++.-.++||+.+.+.+.++++. ++. ++++.-..+ ...... +| T Consensus 2 k~i~iLGSTG--SIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~---P~~-v~~~d~~~~--~~l~~~--~~- 70 (385) T COG0743 2 KKLTILGSTG--SIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFK---PKY-VVIADESAA--KELEDL--LP- 70 (385) T ss_pred CEEEEEECCC--CHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCE-EEECCHHHH--HHHHHH--CC- T ss_conf 4599971687--342889999996898579999734874999999999849---845-885576779--998753--14- Q ss_pred EEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCC--HHHHHHHHHHHHCCCH Q ss_conf 66125776667500169984035698620443167531--2289999999706999 Q gi|254780157|r 86 LGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA--INASLLAVAILALDDK 139 (165) Q Consensus 86 IgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~--~NAal~A~~Il~~~d~ 139 (165) ....+.|.+++-.+..++..--|.+--+|..|= .=||+-+.+=+++-|+ T Consensus 71 -----~~~v~~G~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANK 121 (385) T COG0743 71 -----GTEVLVGEEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANK 121 (385) T ss_pred -----CCEEEECHHHHHHHHHCCCCCEEEEHHHHHCCCHHHHHHHHCCCCEEECCH T ss_conf -----765864377899998467778774203101213779999982881243453 No 130 >KOG1208 consensus Probab=54.95 E-value=20 Score=17.78 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=42.2 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHH-----------------------------HHHHHH Q ss_conf 988749999588169899999999999809982654530103879-----------------------------999889 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPD-----------------------------RLIEFA 52 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~-----------------------------~l~~~~ 52 (165) +.+.+|+||.|++| .+..+.+..|..-|.. |.=++|+.+ .+.+|+ T Consensus 32 ~~~~~~~vVTGans--GIG~eta~~La~~Ga~----Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa 105 (314) T KOG1208 32 DLSGKVALVTGATS--GIGFETARELALRGAH----VVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFA 105 (314) T ss_pred CCCCCEEEEECCCC--CHHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH T ss_conf 67787799958988--4379999999957998----99984777889999999971087763699987999999999999 Q ss_pred HHHH--HCCCEEEEEEECCCCCCH Q ss_conf 8765--359829999726766851 Q gi|254780157|r 53 KNAR--FEGFKLIIAGAGGAAHLP 74 (165) Q Consensus 53 ~~~~--~~~~~viIa~AG~aaaLp 74 (165) +..+ ....++.|--||.-+.-. T Consensus 106 ~~~~~~~~~ldvLInNAGV~~~~~ 129 (314) T KOG1208 106 EEFKKKEGPLDVLINNAGVMAPPF 129 (314) T ss_pred HHHHHCCCCCCEEEECCCCCCCCC T ss_conf 999851787658986552236765 No 131 >PRK09134 short chain dehydrogenase; Provisional Probab=54.61 E-value=20 Score=17.74 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=31.0 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE------------------------EEEEHHCCHHHHHHHHHHHHH-- Q ss_conf 874999958816989999999999980998265------------------------453010387999988987653-- Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA------------------------RIISAHRTPDRLIEFAKNARF-- 57 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~------------------------~V~SAHR~p~~l~~~~~~~~~-- 57 (165) ..||++|.|+.+- +...+++.|-+.|....+ .+..=-+.++.+.++++...+ T Consensus 8 ~~KvalVTGas~G--IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dl~~~~~~~~~v~~~~~~~ 85 (256) T PRK09134 8 APRAALVTGAARR--IGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAQVRALVARASAAL 85 (256) T ss_pred CCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 9997999488678--99999999998799899984999899999999999649918999755899999999999999982 Q ss_pred CCCEEEEEEECCC Q ss_conf 5982999972676 Q gi|254780157|r 58 EGFKLIIAGAGGA 70 (165) Q Consensus 58 ~~~~viIa~AG~a 70 (165) ..++++|.-||.. T Consensus 86 G~iDiLVnNAg~~ 98 (256) T PRK09134 86 GPITLLVNNASLF 98 (256) T ss_pred CCCCEEEECCCCC T ss_conf 9987899887116 No 132 >PRK06914 short chain dehydrogenase; Provisional Probab=54.26 E-value=20 Score=17.70 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=19.6 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 887499995881698999999999998099 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) |+.||++|.|+.| -+...++..|.+-|. T Consensus 1 l~~K~alITGass--GIG~a~A~~la~~G~ 28 (280) T PRK06914 1 MNKKIAIITGASS--GFGLLTTLELAKKDY 28 (280) T ss_pred CCCCEEEEECCCC--HHHHHHHHHHHHCCC T ss_conf 9519899907344--999999999998799 No 133 >PRK06172 short chain dehydrogenase; Provisional Probab=54.06 E-value=20 Score=17.68 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=33.6 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHH------------------------HCCCCEEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 9988749999588169899999999999------------------------8099826545301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLD------------------------TLGIDYEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~------------------------~~gI~~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) |+.+-||++|.|+.+- +...++..|. ++|.+.... ..=-..++.+.+++++.. T Consensus 3 ~~L~gKvalVTGas~G--IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~~ 79 (253) T PRK06172 3 MTFSGQVALVTGGAAG--IGRATAIAFAREGAKVVVADRDAAGGEETVALIREAGGEALFI-ACDVTRDAEVKALVEKTI 79 (253) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHH T ss_conf 8869998999375768--9999999999879989999798899999999999649937999-818999999999999999 Q ss_pred H--CCCEEEEEEECCC Q ss_conf 3--5982999972676 Q gi|254780157|r 57 F--EGFKLIIAGAGGA 70 (165) Q Consensus 57 ~--~~~~viIa~AG~a 70 (165) + ..++++|--||.. T Consensus 80 ~~~G~iDiLVNNAGi~ 95 (253) T PRK06172 80 AAYGRLDYAFNNAGIE 95 (253) T ss_pred HHCCCCCEEEECCCCC T ss_conf 9829999999898889 No 134 >PRK13936 phosphoheptose isomerase; Provisional Probab=53.50 E-value=19 Score=17.90 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=32.6 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC---------CCCEEEECCCCC Q ss_conf 9988987653598299997267668511346522---------420366125776 Q gi|254780157|r 48 LIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT---------SLPVLGVPIISQ 93 (165) Q Consensus 48 l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t---------~~PVIgVP~~~~ 93 (165) ..+.+.+.-.+|-++|+++.|++++.+.-+++.- .+|+|....+.+ T Consensus 32 aa~~i~~~~~~g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~~lpai~L~~d~~ 86 (197) T PRK13936 32 AVELMVQALLNEGKILACGNGGSAADAQHFSSELLNRFERERPSLPAIALTTDSS 86 (197) T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCH T ss_conf 9999999998799899996878999999999998665412788875576436740 No 135 >PRK08263 short chain dehydrogenase; Provisional Probab=53.22 E-value=21 Score=17.60 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=35.2 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHC------------------------CHHHHHHHHHHHHH- Q ss_conf 88749999588169899999999999809982654530103------------------------87999988987653- Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHR------------------------TPDRLIEFAKNARF- 57 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR------------------------~p~~l~~~~~~~~~- 57 (165) |+-||++|.|+.|- +...+++.|-+-|.. |+-.-| .++.+.+.+++..+ T Consensus 1 m~gKv~lITGassG--IG~a~A~~la~~G~~----Vv~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~ 74 (275) T PRK08263 1 MMGKVWFITGASRG--FGREWTEAALERGDR----VVATARDTATLADLAERYGDALLPLALDVTDRAAVFAAVEQAVKH 74 (275) T ss_pred CCCCEEEEECCCHH--HHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH T ss_conf 98998999467439--999999999987998----999979899999999975996799996489999999999999998 Q ss_pred -CCCEEEEEEECCC Q ss_conf -5982999972676 Q gi|254780157|r 58 -EGFKLIIAGAGGA 70 (165) Q Consensus 58 -~~~~viIa~AG~a 70 (165) ..++++|..||.. T Consensus 75 ~G~iDiLVNNAG~~ 88 (275) T PRK08263 75 FGRLDIVVNNAGYG 88 (275) T ss_pred HCCCCEEEECCCCC T ss_conf 49987899888667 No 136 >PRK12463 chorismate synthase; Reviewed Probab=52.60 E-value=21 Score=17.54 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=51.9 Q ss_pred HHHHHHHHCCCCEEEEEEEHHC---------CHHHH--------------------HHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 9999999809982654530103---------87999--------------------988987653598299997267668 Q gi|254780157|r 22 YAADMLDTLGIDYEARIISAHR---------TPDRL--------------------IEFAKNARFEGFKLIIAGAGGAAH 72 (165) Q Consensus 22 ~a~~~L~~~gI~~~~~V~SAHR---------~p~~l--------------------~~~~~~~~~~~~~viIa~AG~aaa 72 (165) =|.+.|++|||+..-+|.+..- +.+++ .+.++.+..++ - . T Consensus 147 iAk~~L~~~GI~v~s~v~~IG~i~~~~~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~ak~~G---------D--S 215 (390) T PRK12463 147 VAKQILKELGVEIAGHVLEIGGVKAKHISNLSIEEIQTITENSPVRCLDKTVEQEMMDAIDNAKSSG---------D--S 215 (390) T ss_pred HHHHHHHHCCCEEEEEEEEECCEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC---------C--C T ss_conf 9999999659569889899877855777889999998777649765889999999999999998639---------9--9 Q ss_pred CHHHHHHHCCCCEEEECCCCCC---CC-CCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC Q ss_conf 5113465224203661257766---67-50016998403569862044316753122899999997069 Q gi|254780157|r 73 LPGMIAAMTSLPVLGVPIISQT---LG-GIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALD 137 (165) Q Consensus 73 Lpgvva~~t~~PVIgVP~~~~~---~~-G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~ 137 (165) | .+-...=+.|||+--|. |+ .+|+.|+-.-| ++| |+-+|-++.|| .++++.+.. T Consensus 216 l----GG~ve~~a~gvP~GLG~pv~~d~kLda~LA~A~m--SIp-AvKGvE~G~GF----~~a~~~GSe 273 (390) T PRK12463 216 I----GGIVEVIAEGMPIGVGSYVHYDRKLDAKLAGAIM--SIN-AFKGAEIGVGF----EAARQPGSK 273 (390) T ss_pred C----CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH--CCC-CCEEEEECCCH----HHHHCCCCC T ss_conf 8----7499999985898888986776501299999862--778-50278863544----230078552 No 137 >PRK05382 chorismate synthase; Validated Probab=52.26 E-value=22 Score=17.50 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=53.7 Q ss_pred HHHHHHHHCCCCEEEEEEEHH----------------------CCH-----HHHHHHHHHHHHCCCEEEEEEECCCCCCH Q ss_conf 999999980998265453010----------------------387-----99998898765359829999726766851 Q gi|254780157|r 22 YAADMLDTLGIDYEARIISAH----------------------RTP-----DRLIEFAKNARFEGFKLIIAGAGGAAHLP 74 (165) Q Consensus 22 ~a~~~L~~~gI~~~~~V~SAH----------------------R~p-----~~l~~~~~~~~~~~~~viIa~AG~aaaLp 74 (165) =|...|+++||+..-+|.+.+ |.| +++.++++.+..++. T Consensus 139 iak~~L~~~gI~v~s~v~~IG~i~~~~~~~~~~~~~~~~~s~~rc~d~~~~~~m~~~I~~ak~~gD-------------- 204 (357) T PRK05382 139 VAKKLLAELGIEVRGYVVQIGGIEADFPDPSEEDWEEVEQNPVRCPDPEAEEEMEELIDEAKKEGD-------------- 204 (357) T ss_pred HHHHHHHHCCCEEEEEEEEECCEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC-------------- T ss_conf 999999966968999999888898687687677898875387778998999999999999975499-------------- Q ss_pred HHHHHHCCCCEEEECCCCCC--CCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 13465224203661257766--67500169984035698620443167531228999999970699 Q gi|254780157|r 75 GMIAAMTSLPVLGVPIISQT--LGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD 138 (165) Q Consensus 75 gvva~~t~~PVIgVP~~~~~--~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d 138 (165) -+.+....=|.|||+--|. ++.+|+.|+-.-| ++| |+-+|-.+.||+ ++++.+... T Consensus 205 -SvGG~ve~~~~gvP~GLG~p~f~klda~La~a~m--sIp-AvKgvEfG~Gf~----~a~~~GSe~ 262 (357) T PRK05382 205 -SIGGVVEVVAEGVPAGLGEPVFDKLDADLAHALM--SIN-AVKGVEIGDGFE----AARLRGSEH 262 (357) T ss_pred -CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH--CCC-CEEEEEECCHHH----HHHCCCCCC T ss_conf -9872899999788989885001632578988861--766-423689645165----752675200 No 138 >PRK00430 fis DNA-binding protein Fis; Provisional Probab=51.50 E-value=12 Score=19.22 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.1 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999997069999999999999 Q gi|254780157|r 127 SLLAVAILALDDKELTDRLNEWR 149 (165) Q Consensus 127 al~A~~Il~~~d~~i~~kl~~~r 149 (165) -.-|++|||++-.-+++||++|- T Consensus 74 qskAA~~LGInR~TLRkKlk~yg 96 (98) T PRK00430 74 QTRAALMLGINRGTLRKKLKKYG 96 (98) T ss_pred HHHHHHHHCCCHHHHHHHHHHHC T ss_conf 99999997877889999999848 No 139 >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Probab=51.39 E-value=22 Score=17.41 Aligned_cols=54 Identities=13% Similarity=0.061 Sum_probs=29.9 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC--CCEEEEEEECCC Q ss_conf 9899999999999809982654530103879999889876535--982999972676 Q gi|254780157|r 16 DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE--GFKLIIAGAGGA 70 (165) Q Consensus 16 D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~--~~~viIa~AG~a 70 (165) |.+-.++....+++.|-.+... ..-...++.+.+.+++..++ .++++|..||.. T Consensus 36 ~~~~~~~~~~~l~~~g~~~~~~-~~Dv~d~~~v~~~v~~~~~~~G~iDilvnnAg~~ 91 (250) T TIGR03206 36 NREAAEKVAADIRAKGGNAQAF-ACDITDRDSVDTAVAAAEQALGPVDVLVNNAGWD 91 (250) T ss_pred CHHHHHHHHHHHHHCCCCEEEE-EECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 8899999999999539928999-9448999999999999999759997999898889 No 140 >pfam01264 Chorismate_synt Chorismate synthase. Probab=50.94 E-value=23 Score=17.37 Aligned_cols=95 Identities=20% Similarity=0.280 Sum_probs=52.5 Q ss_pred HHHHHHHHCCCCEEEEEEEHHC--CH-------------------------HHHHHHHHHHHHCCCEEEEEEECCCCCCH Q ss_conf 9999999809982654530103--87-------------------------99998898765359829999726766851 Q gi|254780157|r 22 YAADMLDTLGIDYEARIISAHR--TP-------------------------DRLIEFAKNARFEGFKLIIAGAGGAAHLP 74 (165) Q Consensus 22 ~a~~~L~~~gI~~~~~V~SAHR--~p-------------------------~~l~~~~~~~~~~~~~viIa~AG~aaaLp 74 (165) =|.+.|++|||...-+|.+... .+ +++.++++++..++. T Consensus 131 iAk~~L~~~gI~i~s~v~~IG~i~~~~~~~~~~~~~~i~~s~~rc~d~~~~~~m~~~I~~ak~~gD-------------- 196 (346) T pfam01264 131 VAKKLLKELGIEVRSYVSSIGGIEAVEADPAEEDFEEVEKSPVRCPDPEAEERMEELIDAAKKEGD-------------- 196 (346) T ss_pred HHHHHHHHCCCEEEEEEEEECCEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC-------------- T ss_conf 999999965968999999888897677787577899875587658998999999999999975399-------------- Q ss_pred HHHHHHCCCCEEEECCCCCC--CCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 13465224203661257766--67500169984035698620443167531228999999970699 Q gi|254780157|r 75 GMIAAMTSLPVLGVPIISQT--LGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD 138 (165) Q Consensus 75 gvva~~t~~PVIgVP~~~~~--~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d 138 (165) -+.+....=+-|||+--|. |+.+|+.|+-.-| ++| |+-+|-.+. +.-++++.+... T Consensus 197 -SlGG~ve~~~~gvP~GLG~p~fdkLda~La~alm--SIp-AvKgvEfG~----Gf~~a~~~GSe~ 254 (346) T pfam01264 197 -SLGGVVEVVARGVPAGLGEPVFDKLDADLAKALM--SIP-AVKGVEIGD----GFAAARMRGSEV 254 (346) T ss_pred -CCCCEEEEEEECCCCCCCCHHHCCCHHHHHHHHH--CCC-CEEEEEECC----HHHHHHCCCCCC T ss_conf -9871899999788988874210524379998861--766-423789644----065542774425 No 141 >cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio Probab=50.46 E-value=23 Score=17.32 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=38.8 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 99999999999809982654530103879999889876535982999972676685113465224 Q gi|254780157|r 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) ...+++....+.+|++++..+...+. | -..+++.+++.+++.||-+.-+-..+...+-|.++ T Consensus 56 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~I~~~a~e~~~DlIVmG~~g~~~~~~~~lGSv~ 117 (132) T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHD-I--ASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVI 117 (132) T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCC-H--HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHH T ss_conf 99999999998769956999997799-7--99999999984999999837999875424447579 No 142 >pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. Probab=50.30 E-value=23 Score=17.30 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=13.7 Q ss_pred CCEEEEE-EECCCCCCHHHHHHHCC Q ss_conf 9829999-72676685113465224 Q gi|254780157|r 59 GFKLIIA-GAGGAAHLPGMIAAMTS 82 (165) Q Consensus 59 ~~~viIa-~AG~aaaLpgvva~~t~ 82 (165) +.++||. +.|++.-+..++..... T Consensus 47 ~ADlii~~G~~~E~~l~~~~~~~~~ 71 (272) T pfam01297 47 KADLVVYNGAGLEPWLDKLLASLAN 71 (272) T ss_pred CCCEEEECCCCCHHHHHHHHHHCCC T ss_conf 6999999298716789999985689 No 143 >PRK00414 gmhA phosphoheptose isomerase; Reviewed Probab=50.28 E-value=18 Score=18.00 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=24.9 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC Q ss_conf 988987653598299997267668511346522 Q gi|254780157|r 49 IEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT 81 (165) Q Consensus 49 ~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t 81 (165) .+.+.+...+|-++|+++.|+|++.+.-.++.. T Consensus 34 a~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~dl 66 (192) T PRK00414 34 AVLIADSFKAGGKVLSCGNGGSHCDAMHFAEEL 66 (192) T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 999999998799799996858899999999987 No 144 >PRK13937 phosphoheptose isomerase; Provisional Probab=50.25 E-value=19 Score=17.84 Aligned_cols=45 Identities=31% Similarity=0.384 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC---------CCCEEEECCC Q ss_conf 99988987653598299997267668511346522---------4203661257 Q gi|254780157|r 47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT---------SLPVLGVPII 91 (165) Q Consensus 47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t---------~~PVIgVP~~ 91 (165) ++.+.+.+.-.++-++|+++.|++++.+.-.+..- .+|+|....+ T Consensus 30 ~~a~~i~~~~~~g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d 83 (192) T PRK13937 30 KIAEALIEALASGGKLLLCGNGGSAADAQHIAAELVGRYKKERPALPAIALTTD 83 (192) T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC T ss_conf 999999999987998999968631888999999996413557898535776788 No 145 >pfam02514 CobN-Mg_chel CobN/Magnesium Chelatase. This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN is implicated in the conversion of hydrogenobyrinic acid a,c-diamide to cobyrinic acid. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis. Probab=49.47 E-value=24 Score=17.22 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=63.1 Q ss_pred CCCEEEEEECC----CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC--H-H Q ss_conf 88749999588----169899999999999809982654530103879999889876535982999972676685--1-1 Q gi|254780157|r 3 IAPPVAIIMGS----QSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL--P-G 75 (165) Q Consensus 3 ~~pkV~Ii~GS----~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL--p-g 75 (165) .+|.|+|+... ..|+.+.......|++-|+....-.+|. +....+.+|........++++|..-+.+-.- + . T Consensus 67 ~~p~Vgilfyr~~~~~g~~~~idali~~Le~~G~nvipvf~~~-~~~~~~~~~~~~~~~~~vd~iI~~~~F~l~~~~~~~ 145 (1064) T pfam02514 67 DAPTVGILFYRSYLLAGDTAHIDALIRALEARGLNVIPVFSDL-DSREAVRDFFFRDGEPKVDAIINLTGFSLVGGPAEN 145 (1064) T ss_pred CCCEEEEEECHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECC-CCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHH T ss_conf 9987999965556643984899999999997899699999457-550999999984799887389973842366888216 Q ss_pred HHH--HHCCCCEEEECCC-CC-------CCCCCCCHHHHHH Q ss_conf 346--5224203661257-76-------6675001699840 Q gi|254780157|r 76 MIA--AMTSLPVLGVPII-SQ-------TLGGIDSLLSIVQ 106 (165) Q Consensus 76 vva--~~t~~PVIgVP~~-~~-------~~~G~dallS~vq 106 (165) .+. .....|||-.-+. .. +..|++.+....| T Consensus 146 ~~~~l~~lnVPvl~~i~~~~~s~~~W~~s~~Gl~~~~~~~~ 186 (1064) T pfam02514 146 GVELLKKLDVPVLQAIPLYFQSREEWEASSRGLSPLDLAMQ 186 (1064) T ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCHHHHHHH T ss_conf 77899877998899752589999999738899797987782 No 146 >PRK12938 acetyacetyl-CoA reductase; Provisional Probab=49.37 E-value=24 Score=17.21 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=35.9 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHHH- Q ss_conf 88749999588169899999999999809982654------------------------53010387999988987653- Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNARF- 57 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~~- 57 (165) |+.||++|.|+.+ -+...+++.|.+-|...-.. +..--+.++.+....+...+ T Consensus 1 L~~KvalVTGgs~--GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~i~~~ 78 (246) T PRK12938 1 MSQRIAYVTGGMG--GIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246) T ss_pred CCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 9509899918586--99999999999879989994799817899999999845997899967879999999999999997 Q ss_pred -CCCEEEEEEECCCC Q ss_conf -59829999726766 Q gi|254780157|r 58 -EGFKLIIAGAGGAA 71 (165) Q Consensus 58 -~~~~viIa~AG~aa 71 (165) ..++++|-.||... T Consensus 79 ~g~idiLVNNAG~~~ 93 (246) T PRK12938 79 VGEIDVLVNNAGITR 93 (246) T ss_pred CCCCCEEEECCCCCC T ss_conf 599989998988899 No 147 >PRK05867 short chain dehydrogenase; Provisional Probab=49.34 E-value=24 Score=17.21 Aligned_cols=48 Identities=25% Similarity=0.215 Sum_probs=27.1 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 988749999588169899999999999809982654530103879999889876 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) +++-||++|.|+.+ -+...+++.|.+.|-.. +-.-|..+++.+..++. T Consensus 6 ~L~gKvalVTGas~--GIG~aiA~~la~~Ga~V----~i~~r~~~~~~~~~~ei 53 (253) T PRK05867 6 DLHGKRALITGAST--GIGKRVALAYVEAGAQV----AIAARHLDALEKLADEI 53 (253) T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEE----EEEECCHHHHHHHHHHH T ss_conf 88999899979565--99999999999869999----99979889999999999 No 148 >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=49.31 E-value=24 Score=17.21 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=34.9 Q ss_pred CCCCEEEEEECCCC----------------------CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH-- Q ss_conf 98874999958816----------------------989999999999980998265453010387999988987653-- Q gi|254780157|r 2 NIAPPVAIIMGSQS----------------------DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF-- 57 (165) Q Consensus 2 ~~~pkV~Ii~GS~S----------------------D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~-- 57 (165) +++-||++|.|+.| |..-.++..+.++.+|.......+ =-..++.+.+.++...+ T Consensus 3 sL~gKvalITGas~GIG~aiA~~la~~Ga~V~l~~r~~~~l~~~~~~i~~~g~~~~~~~~-Dvtd~~~v~~~v~~~~~~~ 81 (238) T PRK07666 3 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARSEENLKAVAKEVEAEGVKAVIATA-DVSDYEEVTTAIETLKNGL 81 (238) T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE-ECCCHHHHHHHHHHHHHHH T ss_conf 999998999163778999999999987998999989999999999999955992799993-0799999999999999981 Q ss_pred CCCEEEEEEECCC Q ss_conf 5982999972676 Q gi|254780157|r 58 EGFKLIIAGAGGA 70 (165) Q Consensus 58 ~~~~viIa~AG~a 70 (165) ..++++|--||.. T Consensus 82 G~iDiLVNNAGi~ 94 (238) T PRK07666 82 GSIDILINNAGIS 94 (238) T ss_pred CCCCEEEECCCCC T ss_conf 9987899847457 No 149 >PRK07707 consensus Probab=48.89 E-value=24 Score=17.16 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=28.2 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 749999588169899999999999809982654530103879999889876 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) .||++|.|+.+ -+...+++.|-+-|...- +..+|..+++.+..++. T Consensus 2 ~KvalVTG~s~--GIG~aia~~la~~Ga~V~---i~~~~~~~~~~~~~~~~ 47 (239) T PRK07707 2 KKYALVTGASG--GIGQAISKQLAQDGYTVY---LHYNNNEEKVNELQEEL 47 (239) T ss_pred CCEEEEECCCC--HHHHHHHHHHHHCCCEEE---EECCCCHHHHHHHHHHH T ss_conf 98999966887--899999999998799899---98399989999999984 No 150 >PRK06227 consensus Probab=48.82 E-value=24 Score=17.16 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=37.2 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC------------------------CEEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 99887499995881698999999999998099------------------------826545301038799998898765 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI------------------------DYEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI------------------------~~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) |+++-||++|.|+.|- +...+++.|.+.|- +.... ..=-+.++.+.+++++.. T Consensus 1 m~L~gKvalVTGas~G--IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~~ 77 (256) T PRK06227 1 MNLSGKVAIVTGGGQG--IGAAIAQTFAENGAKVVIADIDEEAGLEREEMLRSNGLDALFV-KTDVSDEEDVKNMVRKTV 77 (256) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHH T ss_conf 9899988999586688--9999999999879999999698889999999999559918999-816899999999999999 Q ss_pred H--CCCEEEEEEECCC Q ss_conf 3--5982999972676 Q gi|254780157|r 57 F--EGFKLIIAGAGGA 70 (165) Q Consensus 57 ~--~~~~viIa~AG~a 70 (165) + ..++++|..||.. T Consensus 78 ~~~G~iDiLVNNAGi~ 93 (256) T PRK06227 78 ERYGGIDILINNAGIF 93 (256) T ss_pred HHCCCCCEEEECCCCC T ss_conf 9829997999899899 No 151 >PRK10936 periplasmic sensory protein associated with the TorRS two-component regulatory system; Provisional Probab=48.54 E-value=25 Score=17.13 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=58.4 Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 4999958816989---9999999999809982654530103879999889876535982999972676685113465224 Q gi|254780157|r 6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) |+++++-+-+|-- +-..+.+..+++|++..+.-+.--..+.+-.+.++++..++++.||-.+=-+.++. .....-. T Consensus 47 ki~~~~p~lkd~yW~~v~~G~~~~Ak~lGv~l~v~~a~~~~d~~~Q~~qie~~i~~~vDAIil~~vd~~a~~-~~~~~ag 125 (340) T PRK10936 47 KLCALYPHLKDSYWLSVNYGLVQEAKRLGVDLKVLEAGGYYNLATQQQQLEQCVAWGADAILLGAVTPDGPD-LQLQAAN 125 (340) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHCC T ss_conf 799980688886999999999999998098699985899889999999999999759999998678834115-6898589 Q ss_pred CCEEEE Q ss_conf 203661 Q gi|254780157|r 83 LPVLGV 88 (165) Q Consensus 83 ~PVIgV 88 (165) .|||.+ T Consensus 126 IPVI~~ 131 (340) T PRK10936 126 IPVIAL 131 (340) T ss_pred CCEEEE T ss_conf 978999 No 152 >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed Probab=48.53 E-value=12 Score=19.23 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=24.6 Q ss_pred HHCCCCEEEECCCCCCCCCCCCHHHHHHCCC Q ss_conf 5224203661257766675001699840356 Q gi|254780157|r 79 AMTSLPVLGVPIISQTLGGIDSLLSIVQMPA 109 (165) Q Consensus 79 ~~t~~PVIgVP~~~~~~~G~dallS~vqMP~ 109 (165) -.-..|+|-++.++|. -.+.+++|..|||. T Consensus 175 ~~~k~PlIi~saSGGA-RMQEGilSLMQMaK 204 (305) T CHL00174 175 TNESLPLIIVCASGGA-RMQEGSLSLMQMAK 204 (305) T ss_pred HHCCCCEEEEECCCCC-CCCCCHHHHHHHHH T ss_conf 9739978999078763-43462778987799 No 153 >cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree. Probab=48.43 E-value=25 Score=17.12 Aligned_cols=78 Identities=8% Similarity=0.127 Sum_probs=47.9 Q ss_pred EEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-CC Q ss_conf 999958816989---99999999998099826545301038799998898765359829999726766851134652-24 Q gi|254780157|r 7 VAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-TS 82 (165) Q Consensus 7 V~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-t~ 82 (165) |++++.+-++-- +.+.+...+++.| |.+-++..+..+++-.++++....++++-+|.. +.+... ..+..+ -. T Consensus 2 IGvivp~i~npf~~~~~~~i~~~~~~~G--y~l~l~~s~~~~~~e~~~l~~l~~~~vdGiIi~-~~~~~~-~~i~~~~~~ 77 (260) T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHG--YKVVLLQTNYDKEKELEYLELLKTKQVDGLILC-SRENDW-EVIEPYTKY 77 (260) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCH-HHHHHHHHC T ss_conf 8999789878899999999999999869--989999899998999999999984799999993-687998-999999864 Q ss_pred CCEEEE Q ss_conf 203661 Q gi|254780157|r 83 LPVLGV 88 (165) Q Consensus 83 ~PVIgV 88 (165) .||+-+ T Consensus 78 ~pvV~~ 83 (260) T cd06286 78 GPIVLC 83 (260) T ss_pred CCEEEE T ss_conf 999999 No 154 >PRK08936 glucose-1-dehydrogenase; Provisional Probab=47.56 E-value=26 Score=17.03 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=39.1 Q ss_pred CCCCEEEEEECCCC-----------------------CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH- Q ss_conf 98874999958816-----------------------989999999999980998265453010387999988987653- Q gi|254780157|r 2 NIAPPVAIIMGSQS-----------------------DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF- 57 (165) Q Consensus 2 ~~~pkV~Ii~GS~S-----------------------D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~- 57 (165) |++-||++|.|+.+ |..-.++..+.+++.|.++.... .=-+..+.+.++++...+ T Consensus 4 ~L~gKvalVTGa~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~Dv~~~~~v~~~v~~~~~~ 82 (261) T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDESEANDVAEEIKKVGGEAIAVK-GDVTVESDVVNLIQSAVKE 82 (261) T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHH T ss_conf 899998999684778999999999987999999728987899999999996599389998-2799999999999999998 Q ss_pred -CCCEEEEEEECCCCCC Q ss_conf -5982999972676685 Q gi|254780157|r 58 -EGFKLIIAGAGGAAHL 73 (165) Q Consensus 58 -~~~~viIa~AG~aaaL 73 (165) ..++++|--||....- T Consensus 83 ~G~iDiLVNNAg~~~~~ 99 (261) T PRK08936 83 FGTLDVMINNAGIENAV 99 (261) T ss_pred HCCCCEEEECCCCCCCC T ss_conf 29988999899789998 No 155 >PRK01905 DNA-binding protein Fis; Provisional Probab=47.45 E-value=14 Score=18.70 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.9 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999997069999999999999 Q gi|254780157|r 127 SLLAVAILALDDKELTDRLNEWR 149 (165) Q Consensus 127 al~A~~Il~~~d~~i~~kl~~~r 149 (165) -.-|++|||++---+++|+++|. T Consensus 53 Q~kAA~~LGinR~TLRkKlk~yg 75 (77) T PRK01905 53 QSLAAEYLGINRNTLRKKLQQHG 75 (77) T ss_pred HHHHHHHHCCCHHHHHHHHHHHC T ss_conf 99999997865888999999808 No 156 >TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II; InterPro: IPR011910 This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.; GO: 0016757 transferase activity transferring glycosyl groups, 0009103 lipopolysaccharide biosynthetic process. Probab=47.26 E-value=26 Score=17.01 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=52.0 Q ss_pred EEEECCCCCHHHHHH-HHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEE Q ss_conf 999588169899999-9999998099826545301038799998898765359829999726766851134652242036 Q gi|254780157|r 8 AIIMGSQSDWKIMKY-AADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVL 86 (165) Q Consensus 8 ~Ii~GS~SD~~~~~~-a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVI 86 (165) +++.||..|.++.++ +.+.+..--.+|-.+-++..+.-+.+. ++.. ++.+|+=.- .|== ||+=..+||| T Consensus 227 V~lFGS~kD~~~~~~fI~~~~~~~~~~~~~NLaG~T~L~EAvd-Lia~-----a~avV~NDS---GLMH-VAAAL~rPlV 296 (361) T TIGR02195 227 VVLFGSKKDKPVGDEFIEALAPGELREYCDNLAGETSLDEAVD-LIAL-----AKAVVSNDS---GLMH-VAAALNRPLV 296 (361) T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHH-----CCEEEECCH---HHHH-HHHHCCCCEE T ss_conf 9984284557899999998634468899741047888889999-9871-----560121560---6799-9996279889 Q ss_pred EECCCCC Q ss_conf 6125776 Q gi|254780157|r 87 GVPIISQ 93 (165) Q Consensus 87 gVP~~~~ 93 (165) ||==+++ T Consensus 297 AlYGsTs 303 (361) T TIGR02195 297 ALYGSTS 303 (361) T ss_pred EEECCCC T ss_conf 9736856 No 157 >cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in Probab=47.21 E-value=26 Score=17.00 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=24.4 Q ss_pred CHHHH-HHHHHHHHHCCCEEEEEEECCCC-CC---HHHHHHHCCCCEEEECC Q ss_conf 87999-98898765359829999726766-85---11346522420366125 Q gi|254780157|r 44 TPDRL-IEFAKNARFEGFKLIIAGAGGAA-HL---PGMIAAMTSLPVLGVPI 90 (165) Q Consensus 44 ~p~~l-~~~~~~~~~~~~~viIa~AG~aa-aL---pgvva~~t~~PVIgVP~ 90 (165) +|..+ ..+++.+-..+...++..-.... ++ -..+++.|..||||+-- T Consensus 46 ~P~s~l~~lC~~l~~~~v~~vv~~~~~~~e~~a~~ldf~S~q~~iPvigi~g 97 (362) T cd06378 46 DPKSILTQLCDLLSTTKVHGVVFEDDTDQEAVAQILDFISAQTFLPILGIHG 97 (362) T ss_pred CHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 8789999999998645348999967988522577887654410277899705 No 158 >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed Probab=46.93 E-value=26 Score=16.97 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=23.0 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 99887499995881698999999999998099 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) |+.+-|+++|.|+.+ -+.+.+++.|.+.|. T Consensus 2 ~~l~gK~alITG~s~--GIG~aia~~~a~~Ga 31 (245) T PRK12936 2 FDLTGRKALVTGASG--GIGEEIARLLHAQGA 31 (245) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCC T ss_conf 388999899927476--899999999998699 No 159 >PRK12827 short chain dehydrogenase; Provisional Probab=46.75 E-value=26 Score=16.95 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=38.7 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---------------------------HCCHHHHHHHHHH Q ss_conf 9887499995881698999999999998099826545301---------------------------0387999988987 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---------------------------HRTPDRLIEFAKN 54 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---------------------------HR~p~~l~~~~~~ 54 (165) +++-||++|.|+.+ -+...++..|.+.|-...+.-.+. -+.++.+.+.++. T Consensus 3 ~L~gKvalVTGas~--GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~v~~ 80 (251) T PRK12827 3 SLDSRRVLITGGSG--GLGRAIAVRLAADGADVIVLDIHPMRGRAEAEAVAALIEAAGGKALGLAFDVRDFAATRAALDA 80 (251) T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH T ss_conf 98998899968255--8999999999987998999848885328999999999996498499999038999999999999 Q ss_pred HHH--CCCEEEEEEECCCC Q ss_conf 653--59829999726766 Q gi|254780157|r 55 ARF--EGFKLIIAGAGGAA 71 (165) Q Consensus 55 ~~~--~~~~viIa~AG~aa 71 (165) ..+ ..++++|..||... T Consensus 81 ~~~~~G~iDiLVNnAG~~~ 99 (251) T PRK12827 81 GVEEFGRLDILVNNAGIAT 99 (251) T ss_pred HHHHCCCCCEEEECCCCCC T ss_conf 9998399979998998899 No 160 >PRK06138 short chain dehydrogenase; Provisional Probab=46.59 E-value=26 Score=16.94 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=38.6 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE---------------------E-EEEHHCCHHHHHHHHHHHHH- Q ss_conf 998874999958816989999999999980998265---------------------4-53010387999988987653- Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA---------------------R-IISAHRTPDRLIEFAKNARF- 57 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~---------------------~-V~SAHR~p~~l~~~~~~~~~- 57 (165) |+++-||++|.|+.|- +.+.+++.|-+.|-...+ . +..=-..++.+.+++++..+ T Consensus 1 m~L~gKvalVTGas~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 78 (252) T PRK06138 1 MRLAGRVAIVTGAGSG--IGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 9889988999474679--99999999998799899996887899999999837991999994289999999999999998 Q ss_pred -CCCEEEEEEECCC Q ss_conf -5982999972676 Q gi|254780157|r 58 -EGFKLIIAGAGGA 70 (165) Q Consensus 58 -~~~~viIa~AG~a 70 (165) ..++++|-.||.. T Consensus 79 ~G~iDiLVNNAG~~ 92 (252) T PRK06138 79 WGRLDVLVNNAGFG 92 (252) T ss_pred CCCCCEEEECCCCC T ss_conf 29998999898899 No 161 >pfam01522 Polysacc_deac_1 Polysaccharide deacetylase. This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan. Probab=46.18 E-value=27 Score=16.90 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=41.6 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHH--CCHHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 8874999958816989999999999980998265453010--3879999889876535982999972676 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAH--RTPDRLIEFAKNARFEGFKLIIAGAGGA 70 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAH--R~p~~l~~~~~~~~~~~~~viIa~AG~a 70 (165) ..+|++.|.=-+........+..+|++++++....|.+.+ +.|+.+.++.+ +| .-|+.=|.+ T Consensus 3 ~~~k~v~lTfDDG~~~~~~~~l~~L~~~~i~aTfFv~~~~i~~~~~~~~~l~~----~G--~eig~Ht~~ 66 (123) T pfam01522 3 TPKKSVALTFDDGPPDNTPRILDVLKKYGVPATFFVIGGNAETYPELVRRMVA----EG--HEIGNHTYS 66 (123) T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH----CC--CEEEECCCC T ss_conf 99978999874797351999999999829986997247645368999999998----79--987421045 No 162 >pfam00532 Peripla_BP_1 family. This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (pfam00356). Probab=45.81 E-value=27 Score=16.86 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=51.8 Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH--HHH Q ss_conf 4999958816989---99999999998099826545301038799998898765359829999726766851134--652 Q gi|254780157|r 6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI--AAM 80 (165) Q Consensus 6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv--a~~ 80 (165) .++++.-.-++-- +++.+.+.+++.| |.+-+++.+..+++..++++.+..++++-+|.. +.....+-.. ... T Consensus 3 TIGvivpdi~npff~~i~~gie~~a~~~G--y~~ll~~t~~~~~~e~~~l~~l~~~~vDGiIi~-~~~~~~~~~~~~~~~ 79 (281) T pfam00532 3 KLGALVPQLDEPFFQDLVKGITKAAKDHG--FDVFLLAVGDGEDTLTNAIDLLLASGADGIIIT-TPAPSGDDITAKAEG 79 (281) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHH T ss_conf 99999798861899999999999999839--989999799998999999999996599989993-688984999999985 Q ss_pred CCCCEEEE Q ss_conf 24203661 Q gi|254780157|r 81 TSLPVLGV 88 (165) Q Consensus 81 t~~PVIgV 88 (165) ...||+-+ T Consensus 80 ~~iPvV~~ 87 (281) T pfam00532 80 YGIPVIAA 87 (281) T ss_pred CCCCEEEE T ss_conf 79978999 No 163 >cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=45.60 E-value=27 Score=16.84 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=56.4 Q ss_pred EEEEEECCC-CC--HHHH-HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC Q ss_conf 499995881-69--8999-9999999980998265453010387999988987653598299997267668511346522 Q gi|254780157|r 6 PVAIIMGSQ-SD--WKIM-KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT 81 (165) Q Consensus 6 kV~Ii~GS~-SD--~~~~-~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t 81 (165) |++.++.|. +| |.-+ +.+.+..+++|++.++. .+..-.+..-.+.++++..++++.||...--+.++...+.-.. T Consensus 1 ki~~v~~~~~~npf~~~v~~G~~~aA~~~Gv~v~~~-~~~~~d~~~Q~~~i~~~i~~~vDaIii~p~~~~~~~~~i~~a~ 79 (271) T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYR-GPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAV 79 (271) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEE-ECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH T ss_conf 989992799998389999999999999969989999-6898999999999999997599989993788300269999999 Q ss_pred --CCCEEEE Q ss_conf --4203661 Q gi|254780157|r 82 --SLPVLGV 88 (165) Q Consensus 82 --~~PVIgV 88 (165) -.|||.+ T Consensus 80 ~agIpVv~~ 88 (271) T cd06312 80 AAGIPVISF 88 (271) T ss_pred HCCCEEEEE T ss_conf 659869999 No 164 >pfam06253 MTTB Trimethylamine methyltransferase (MTTB). This family consists of several trimethylamine methyltransferase (MTTB) (EC:2.1.1.-) proteins from numerous Rhizobium and Methanosarcina species. Probab=45.39 E-value=28 Score=16.82 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=62.4 Q ss_pred EECCCCCHHHHHHHHHHHHH-CCCC----------EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC----- Q ss_conf 95881698999999999998-0998----------2654530103879999889876535982999972676685----- Q gi|254780157|r 10 IMGSQSDWKIMKYAADMLDT-LGID----------YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL----- 73 (165) Q Consensus 10 i~GS~SD~~~~~~a~~~L~~-~gI~----------~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL----- 73 (165) ++++..+....+.+.+.++. +|.+ ..+.+.|.-|.-....+-+..+-..|.-++|.-.+++++- T Consensus 191 ~~~~~~~~e~v~d~ieM~~i~~G~ee~~~~~P~~~~~in~~SPL~~d~~~~~~l~~~a~~gqpv~i~p~~laGAtaPvT~ 270 (505) T pfam06253 191 FMGSATGRERAEDGIEMARIARGIEDFVRANPVILTIINVNSPLVFDETMAGGLIAYAEHGQPVVITPFTLAGAMAPVTI 270 (505) T ss_pred EEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCH T ss_conf 48751876758999999999768788897396588764478876528899999999997699789601321688876538 Q ss_pred ------------HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCC Q ss_conf ------------1134652242036612577666750016998403569862 Q gi|254780157|r 74 ------------PGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPV 113 (165) Q Consensus 74 ------------pgvva~~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpv 113 (165) +|++-++...| |.|+--|. ..|++-|-+|-|. T Consensus 271 AGalaq~~AE~LaGi~l~Qli~P--GaPviyG~------~~~~~DmrtGa~~ 314 (505) T pfam06253 271 AGALAQQNAEALAGVALTQLVRP--GAPVIYGT------FTSNVDMKSGAPA 314 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CCCEEECC------CCCCEECCCCCCC T ss_conf 99999999999999999997289--99779788------7652105768888 No 165 >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process. Probab=45.36 E-value=28 Score=16.82 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=56.2 Q ss_pred HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 99999999998099826545301038799998898765359829999726766851134652242036612577666750 Q gi|254780157|r 19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGI 98 (165) Q Consensus 19 ~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~ 98 (165) +.+-+..+-++++|+..-+....+=+-+++.++++++++.|+.=|.|==| =....+.++ |..++.-..- T Consensus 61 T~~~~~~I~~~~~~~~v~HLtC~~~t~~e~~~~L~~y~~~Gi~~ilALRG-------D~p~~~~~~----~~~~~~~yA~ 129 (302) T TIGR00676 61 TVRIVRRIKKETGIPTVPHLTCIGSTREEIEEILREYRELGIRNILALRG-------DPPDETDFE----PAPGGFKYAS 129 (302) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC-------CCCCCCCCC----CCCCCCCCHH T ss_conf 89999999873288630000023689899999999998748867987437-------688888656----5887667768 Q ss_pred CCHHHHHHC Q ss_conf 016998403 Q gi|254780157|r 99 DSLLSIVQM 107 (165) Q Consensus 99 dallS~vqM 107 (165) | |-+.+.- T Consensus 130 e-LV~~Ir~ 137 (302) T TIGR00676 130 E-LVEFIRS 137 (302) T ss_pred H-HHHHHHH T ss_conf 9-9999983 No 166 >PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional Probab=45.25 E-value=28 Score=16.80 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=50.6 Q ss_pred EEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 99995--8816989999999999980998265453010387999988987653598299997267 Q gi|254780157|r 7 VAIIM--GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG 69 (165) Q Consensus 7 V~Ii~--GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~ 69 (165) |.|-. |+.+--.+.+-+..+.+++|++.-.+..+..++.+++.+++..+...|++=|.|.-|= T Consensus 56 vSVTyGAggstr~~T~~i~~~i~~~~~i~~~~HLTCvg~t~~~i~~~L~~~~~~GI~nILALRGD 120 (296) T PRK09432 56 VSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLTCIDATPEELRTIAKDYWNNGIRHIVALRGD 120 (296) T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 99607989977356999999999874998112666269999999999999997597548654898 No 167 >pfam00462 Glutaredoxin Glutaredoxin. Probab=45.20 E-value=28 Score=16.80 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=29.7 Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHH Q ss_conf 58816989999999999980998265453010387999988987 Q gi|254780157|r 11 MGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKN 54 (165) Q Consensus 11 ~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~ 54 (165) +=|.+.=|...++...|+++|++|+..-+.- .++...++.+. T Consensus 3 iys~~~C~~C~~ak~~L~~~~i~y~~~~v~~--~~~~~~~l~~~ 44 (60) T pfam00462 3 LFTKPTCPFCKRAKRLLKSLGVKFEEIDVDE--DPEIREELKEL 44 (60) T ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEECCC--CHHHHHHHHHH T ss_conf 9938989739999999998099753321589--99999999998 No 168 >KOG4626 consensus Probab=45.11 E-value=28 Score=16.79 Aligned_cols=52 Identities=31% Similarity=0.447 Sum_probs=30.1 Q ss_pred ECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHH Q ss_conf 125776667500169984035698620443167531228999999970699999-9999999 Q gi|254780157|r 88 VPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKEL-TDRLNEW 148 (165) Q Consensus 88 VP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i-~~kl~~~ 148 (165) -|+-.|...|+|.||. |+|+.|+. |..-+-+-| +.+..++.-.++ ++...+| T Consensus 842 TplcnGhTTg~dvLw~------GvPmVTmp-ge~lAsrVa--~Sll~~~Gl~hliak~~eEY 894 (966) T KOG4626 842 TPLCNGHTTGMDVLWA------GVPMVTMP-GETLASRVA--ASLLTALGLGHLIAKNREEY 894 (966) T ss_pred CCCCCCCCCCHHHHCC------CCCEEECC-CHHHHHHHH--HHHHHHCCCHHHHHHHHHHH T ss_conf 7675886655233103------77426335-088898989--99999816288875128999 No 169 >PRK09135 pteridine reductase; Provisional Probab=45.09 E-value=28 Score=16.79 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=24.8 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE Q ss_conf 9988749999588169899999999999809982 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDY 34 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~ 34 (165) |+.+-||++|.|+.+- +...+++.|.+.|-.. T Consensus 2 M~~sgKvalVTGas~G--IG~aia~~la~~Ga~V 33 (249) T PRK09135 2 MTDSSKVALITGGARR--IGAAIARTLHAAGYRV 33 (249) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEE T ss_conf 7899988999688758--9999999999879989 No 170 >cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains. Probab=45.01 E-value=24 Score=17.19 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=13.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999840540 Q gi|254780157|r 138 DKELTDRLNEWRTQQTISISEYPKD 162 (165) Q Consensus 138 d~~i~~kl~~~r~~~~~~v~~~~~~ 162 (165) .++-++++.+|.++....+.+.-++ T Consensus 147 ~e~rA~~l~~~~~~~~~~v~~r~~~ 171 (342) T cd01139 147 REERAEEFIEFYQERIDRIRDRLAK 171 (342) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8899999999999999999999742 No 171 >COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism] Probab=44.46 E-value=28 Score=16.73 Aligned_cols=148 Identities=19% Similarity=0.272 Sum_probs=84.0 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE---HHCCHHHHHHHHHHHHHCCC---EEEEEEECC-CCCCHHHH Q ss_conf 749999588169899999999999809982654530---10387999988987653598---299997267-66851134 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIIS---AHRTPDRLIEFAKNARFEGF---KLIIAGAGG-AAHLPGMI 77 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~S---AHR~p~~l~~~~~~~~~~~~---~viIa~AG~-aaaLpgvv 77 (165) .|+.|+.-.+=.--+.++....|+..|+..+..++. ..++.+.+.++.+.....+. +.+|+.-|+ -+-|.|.+ T Consensus 34 ~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~ 113 (360) T COG0337 34 RKVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFA 113 (360) T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH T ss_conf 74999977115787799999999855860579995798450559999999999997599988679997875877777899 Q ss_pred HHHCC--CCEEEECCCC-----CCC---CCCC-----CHHHHHHCCCCCCCEEE---ECCCCCCHHHHHH-HHHHHHCCC Q ss_conf 65224--2036612577-----666---7500-----16998403569862044---3167531228999-999970699 Q gi|254780157|r 78 AAMTS--LPVLGVPIIS-----QTL---GGID-----SLLSIVQMPAGVPVGTM---AIGQSGAINASLL-AVAILALDD 138 (165) Q Consensus 78 a~~t~--~PVIgVP~~~-----~~~---~G~d-----allS~vqMP~Gvpvatv---~vg~~~~~NAal~-A~~Il~~~d 138 (165) |+--- .+.|-+|+.- ++. .|++ .+.-+.-.|..|=+-|. ..+ ..-+.+++. +.+.=.+.| T Consensus 114 Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp-~re~~~G~AEvIK~g~I~D 192 (360) T COG0337 114 AATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLP-PRELRAGMAEVIKYGLIAD 192 (360) T ss_pred HHHHHHCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEECHHHHCCCC-HHHHHHHHHHHHHHHHHCC T ss_conf 999970897675563298776234564345378887622651569867998058864199-8899876999988764368 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780157|r 139 KELTDRLNEWRTQQT 153 (165) Q Consensus 139 ~~i~~kl~~~r~~~~ 153 (165) +++.+.|.+..++.. T Consensus 193 ~~~f~~Le~~~~~l~ 207 (360) T COG0337 193 PEFFDWLEENLDALL 207 (360) T ss_pred HHHHHHHHHHHHHHH T ss_conf 899999998899987 No 172 >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional Probab=43.89 E-value=29 Score=16.67 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=38.9 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 7499995881698999999999998099826545301038799998898765359829999726766 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAA 71 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aa 71 (165) -.++.++|. +|..+.++|.+.-+++|+...+.-+.. +.|.+..+-++ -+.+++..-.|... T Consensus 251 ADivtVlG~-A~~sTI~~aikeA~k~G~~v~vDlInV-~dpv~ra~eLk----lg~DiI~lH~giD~ 311 (392) T PRK13307 251 ADAVVISGL-APISTIEKAIHEAQKTGIYSILDMLNV-EDPVKLLESLK----VKPDVVELHRGIDE 311 (392) T ss_pred CCEEEEECC-CCHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHHHC----CCCCEEEEEECCCH T ss_conf 988999567-987899999999997097999983478-88899999844----46988999854126 No 173 >PRK08251 short chain dehydrogenase; Provisional Probab=43.74 E-value=29 Score=16.66 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=24.6 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 8749999588169899999999999809982654530103879999889876 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |.|.++|.|+.| -+..+.++.|.+-|-. + .-.-|..+++.+..++. T Consensus 1 t~K~vlITGAss--GIG~alA~~la~~G~~--v--~l~~r~~~~l~~~~~el 46 (248) T PRK08251 1 TRQKILITGASS--GLGAGMAREFAAKGRD--L--ALCARRTDRLEELKAEL 46 (248) T ss_pred CCCEEEEECCCC--HHHHHHHHHHHHCCCE--E--EEEECCHHHHHHHHHHH T ss_conf 999899947863--9999999999987998--9--99989888999999999 No 174 >cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o Probab=43.51 E-value=29 Score=16.63 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=58.3 Q ss_pred EEEEECCC--CCHHHHHHHHHHHHHCCCCEEEE--EEEH-----HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH Q ss_conf 99995881--69899999999999809982654--5301-----038799998898765359829999726766851134 Q gi|254780157|r 7 VAIIMGSQ--SDWKIMKYAADMLDTLGIDYEAR--IISA-----HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI 77 (165) Q Consensus 7 V~Ii~GS~--SD~~~~~~a~~~L~~~gI~~~~~--V~SA-----HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv 77 (165) |+|+.=|. ++....+.+.+.|+.+|.+..+. +... ...-+|..++.+-..+.++++++++-|+-++- =+ T Consensus 1 I~ivaPS~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dl~~a~~dp~i~aI~~~rGG~ga~--rl 78 (282) T cd07025 1 IGIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGAN--RL 78 (282) T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHH--HH T ss_conf 9799189999988999999999996899898787623446775799999999999985289998999927754399--99 Q ss_pred HHHCCCCEEEEC--CCCCCCCCCCCHHHHHHCCCCC Q ss_conf 652242036612--5776667500169984035698 Q gi|254780157|r 78 AAMTSLPVLGVP--IISQTLGGIDSLLSIVQMPAGV 111 (165) Q Consensus 78 a~~t~~PVIgVP--~~~~~~~G~dallS~vqMP~Gv 111 (165) --+.++..|.=. +.-|+ .-..+|+..++--.|+ T Consensus 79 L~~ld~~~i~~~pK~~iGy-SDiTaL~~al~~~~g~ 113 (282) T cd07025 79 LPYLDYDLIRANPKIFVGY-SDITALHLALYAKTGL 113 (282) T ss_pred HHHCCHHHHHHCCEEEEEC-CHHHHHHHHHHHHCCC T ss_conf 8651543561088189960-2579999999982496 No 175 >TIGR00147 TIGR00147 conserved hypothetical protein TIGR00147; InterPro: IPR005218 Although the proteins in this group all contain the diacylglycerol kinase catalytic domain, their function is, as yet, unknown.. Probab=43.50 E-value=29 Score=16.63 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=62.4 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC----- Q ss_conf 995881698999999999998099826545301038799998898765359829999726766851134652242----- Q gi|254780157|r 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL----- 83 (165) Q Consensus 9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~----- 83 (165) +..|...+..+..++...|++-+.++.+++..--=..+..-.++++..+++.+-+| ++|+.+..--||.|+..+ T Consensus 12 ~~~G~~~~~~~L~~v~~~L~~~~~e~~~~~T~~~Ghaed~A~~~~~~~~~~~~~vi-~~GGDGTi~ev~naL~~~d~~di 90 (316) T TIGR00147 12 PTAGKKNIEKALKEVVKKLEKEGVEVRVKLTKKKGHAEDAARAVKEAAEYKVDTVI-ALGGDGTIHEVVNALKDLDDKDI 90 (316) T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHCCCCC T ss_conf 40012445677999999998577759998516788466899999998744666899-96189848999888875125778 Q ss_pred CEEEECCCC Q ss_conf 036612577 Q gi|254780157|r 84 PVLGVPIIS 92 (165) Q Consensus 84 PVIgVP~~~ 92 (165) |-+|+=|.+ T Consensus 91 P~lg~~P~G 99 (316) T TIGR00147 91 PALGILPVG 99 (316) T ss_pred CEEEEECCC T ss_conf 824543576 No 176 >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=43.42 E-value=30 Score=16.62 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=35.1 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCCC Q ss_conf 6989999999999980998265453010387999988987653--59829999726766 Q gi|254780157|r 15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGAA 71 (165) Q Consensus 15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~aa 71 (165) ++.+.+++..+.++++|.+.... ..=-+.++.+.++.++..+ ..++++|.-||..- T Consensus 36 ~~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~~~~~g~iDiLVnNAG~~~ 93 (249) T PRK06077 36 KRAEEMNETLRMVKEYGGEGIGV-LADVSTREGCRTLAKAALDNFGVVDILVNNAGLGL 93 (249) T ss_pred CCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 87689999999999759958999-84799999999999999998199888998577578 No 177 >PRK05654 acetyl-CoA carboxylase subunit beta; Validated Probab=43.28 E-value=15 Score=18.44 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=42.9 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH----------------HH----------HHHCCCCEEEECCCCCCCCC Q ss_conf 87999988987653598299997267668511----------------34----------65224203661257766675 Q gi|254780157|r 44 TPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG----------------MI----------AAMTSLPVLGVPIISQTLGG 97 (165) Q Consensus 44 ~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpg----------------vv----------a~~t~~PVIgVP~~~~~~~G 97 (165) -.+|+.+..+.-. -.+.++++-|.=+..+- ++ |-....|+|.+..++|. -. T Consensus 97 Y~drl~~a~kkTg--~~dav~~g~G~I~g~~v~~~~~df~F~GGSmG~~~GEki~~a~e~A~~~~~PlI~~~~SGGa-RM 173 (288) T PRK05654 97 YKDRLKAAQKKTG--LKDAVVTGKGTIEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERALEEKCPLVIFSASGGA-RM 173 (288) T ss_pred HHHHHHHHHHHCC--CCCEEEEEEEEECCEEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCH-HH T ss_conf 7899999998709--75079998999999999999952145426645789999999999999749978999678763-33 Q ss_pred CCCHHHHHHCCC-----------CCCCEEEEC Q ss_conf 001699840356-----------986204431 Q gi|254780157|r 98 IDSLLSIVQMPA-----------GVPVGTMAI 118 (165) Q Consensus 98 ~dallS~vqMP~-----------Gvpvatv~v 118 (165) ..+++|..|||. |+|--++.. T Consensus 174 QEGi~SLmQMaKts~A~~~l~~~~lpyI~vlt 205 (288) T PRK05654 174 QEGLLSLMQMAKTSAALKRLSEAGLPYISVLT 205 (288) T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 27467899889999999999976996899966 No 178 >PRK08213 gluconate 5-dehydrogenase; Provisional Probab=43.27 E-value=30 Score=16.61 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=37.1 Q ss_pred CCCCEEEEEECCCCCH----------------------HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH-- Q ss_conf 9887499995881698----------------------9999999999980998265453010387999988987653-- Q gi|254780157|r 2 NIAPPVAIIMGSQSDW----------------------KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF-- 57 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~----------------------~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~-- 57 (165) +++-||++|.|+.+-+ +-.++..+.++..|.+..... .=-+.++.+.+++++..+ T Consensus 9 ~L~gKvalVTG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~-~Dv~~~~~v~~~v~~~~~~~ 87 (259) T PRK08213 9 DLTGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWLA-ADVADEADIERLAEETLERF 87 (259) T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHHH T ss_conf 99999899948776899999999998699999997988999999999995499589998-26899999999999999983 Q ss_pred CCCEEEEEEECCC Q ss_conf 5982999972676 Q gi|254780157|r 58 EGFKLIIAGAGGA 70 (165) Q Consensus 58 ~~~~viIa~AG~a 70 (165) ..++++|--||.. T Consensus 88 G~iDiLVNNAG~~ 100 (259) T PRK08213 88 GHIDILVNNAGAT 100 (259) T ss_pred CCCCEEEECCCCC T ss_conf 9998999899778 No 179 >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=43.16 E-value=30 Score=16.60 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=23.9 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE Q ss_conf 9988749999588169899999999999809982 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDY 34 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~ 34 (165) |+++-|+++|.|+.+ -+...+++.|-+.|... T Consensus 2 ~~L~gK~alVTGas~--GIG~aia~~la~~Ga~V 33 (254) T PRK08642 2 MDISEQIVLVTGGSR--GLGAAIARAFAREGARV 33 (254) T ss_pred CCCCCCEEEEECHHH--HHHHHHHHHHHHCCCEE T ss_conf 898989999978111--99999999999879999 No 180 >TIGR02456 treS_nterm trehalose synthase; InterPro: IPR012810 Trehalose synthase interconverts maltose and alpha,alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor . More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process. Probab=43.15 E-value=30 Score=16.60 Aligned_cols=50 Identities=32% Similarity=0.547 Sum_probs=36.4 Q ss_pred CHHHHHHHHHHHHHCCCC----------------EEE----EEEEHHCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 989999999999980998----------------265----45301038799998898765359829999 Q gi|254780157|r 16 DWKIMKYAADMLDTLGID----------------YEA----RIISAHRTPDRLIEFAKNARFEGFKLIIA 65 (165) Q Consensus 16 D~~~~~~a~~~L~~~gI~----------------~~~----~V~SAHR~p~~l~~~~~~~~~~~~~viIa 65 (165) |++=.-.=-.+|+++||+ |++ .|.=-|=|.+...+++.++..+|.+|||= T Consensus 26 Df~GLt~KLDYL~~LGVD~LWLlPFf~SPLRDdGYDvsDY~~ilPe~GtldDF~~fv~~AH~Rg~RvI~d 95 (560) T TIGR02456 26 DFPGLTSKLDYLKELGVDALWLLPFFKSPLRDDGYDVSDYRAILPEYGTLDDFKEFVDEAHARGMRVIID 95 (560) T ss_pred CHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 7234521104778623221131677788776788203423000677887789999999997579889996 No 181 >COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Probab=43.03 E-value=30 Score=16.59 Aligned_cols=61 Identities=38% Similarity=0.497 Sum_probs=43.9 Q ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE-EEEEE Q ss_conf 9887-49999588169899999999999809982654530103879999889876535982-99997 Q gi|254780157|r 2 NIAP-PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK-LIIAG 66 (165) Q Consensus 2 ~~~p-kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~-viIa~ 66 (165) |++| .|-||.-+.||..+..++..-+. +|-+|.+.|.|..-|.. .++++.+ ..|.+ |+||- T Consensus 3 ~k~pVDVRIiVEGAsDvE~iSkalQr~a-LG~eYnITisSIiPTT~--~eIA~ra-aeGADlvlIAT 65 (290) T COG4026 3 NKTPVDVRIIVEGASDVEVISKALQRLA-LGSEYNITISSIIPTTN--VEIAKRA-AEGADLVLIAT 65 (290) T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHH-HCCCCEEEEEEECCCCH--HHHHHHH-HCCCCEEEEEE T ss_conf 9986317998606533899999998864-05611058886226751--9999876-35687799960 No 182 >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional Probab=42.93 E-value=30 Score=16.58 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=30.6 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EEEHHCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 69899999999999809982654---53010387999988987653598299997 Q gi|254780157|r 15 SDWKIMKYAADMLDTLGIDYEAR---IISAHRTPDRLIEFAKNARFEGFKLIIAG 66 (165) Q Consensus 15 SD~~~~~~a~~~L~~~gI~~~~~---V~SAHR~p~~l~~~~~~~~~~~~~viIa~ 66 (165) |-+-+-+++..+|++|||+|+.. +..+| .++....++..+.+.|.++|=+. T Consensus 72 ~~iVv~~~a~~iLde~gi~y~~~~~g~~v~d-~~~~~s~L~~~a~~aGakifn~~ 125 (257) T PRK04176 72 NKIVVQEEADEILDEFGIRYKEVEDGLYVAD-SVEAAAKLAAGAIDAGAKIFNGV 125 (257) T ss_pred CHHHHCCHHHHHHHHCCCCCEECCCCEEEEC-HHHHHHHHHHHHHHCCCEEEECC T ss_conf 3454005379999984997333589639950-89999999999974798898230 No 183 >PRK06720 hypothetical protein; Provisional Probab=42.34 E-value=31 Score=16.52 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=33.8 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE Q ss_conf 9988749999588169899999999999809982654530103879999889876535982 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~ 61 (165) |+.+-||++|.|+.+- +.+.++..|.+.|.. |+-.-|+.+.+.+..++....+.+ T Consensus 12 ~~L~gKvalITGa~~G--IG~a~A~~la~~Ga~----Vvi~d~~~~~~~~~~~~i~~~g~~ 66 (169) T PRK06720 12 MKLAGKVAIVTGGGIG--IGRNTALLLAKQGAK----VIVTDIDQESGQATVEEITNLGGE 66 (169) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCE----EEEECCCHHHHHHHHHHHHHCCCC T ss_conf 8629999999897548--999999999986998----999527636599999999974995 No 184 >PRK12746 short chain dehydrogenase; Provisional Probab=42.27 E-value=31 Score=16.51 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=19.6 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 9887499995881698999999999998099 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) +++-||++|.|+.+- +...++..|-+.|. T Consensus 3 ~l~gKvalITGga~G--IG~aia~~la~~Ga 31 (254) T PRK12746 3 NLDGKVALVTGASRG--IGRAIAMRLANDGA 31 (254) T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHCCC T ss_conf 999988999484768--99999999998799 No 185 >pfam02006 DUF137 Protein of unknown function DUF137. This family of archaeal proteins has no known function. Probab=41.98 E-value=31 Score=16.48 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=48.1 Q ss_pred HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCHHHH--------HHHCCCCEEEEC Q ss_conf 999999999980998265453010387999988987653598299997-26766851134--------652242036612 Q gi|254780157|r 19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG-AGGAAHLPGMI--------AAMTSLPVLGVP 89 (165) Q Consensus 19 ~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~-AG~aaaLpgvv--------a~~t~~PVIgVP 89 (165) ..++..+.-+..+.+.|+.+ -|||++|+..+.+..+..|.+-+... .-.+.-+||.= .|.-.--|+=|| T Consensus 19 a~~e~v~La~~~~a~iEVNl--FyRT~eR~~~I~~~L~~~g~~~vlG~~~d~~~~ipgL~~~R~~~~~~GI~~ADvVLVP 96 (178) T pfam02006 19 VPEEIVELAEALGAKIEVNL--FYRTEERVEKIAEVLREHGAKEVLGVGPDASERIPGLDHERGKVSPDGIYSADVVLVP 96 (178) T ss_pred CHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEE T ss_conf 84989999998099889994--3489899999999999759755544687645527898785340460454103379984 Q ss_pred CCCC Q ss_conf 5776 Q gi|254780157|r 90 IISQ 93 (165) Q Consensus 90 ~~~~ 93 (165) ..-| T Consensus 97 LEDG 100 (178) T pfam02006 97 LEDG 100 (178) T ss_pred CCCC T ss_conf 5778 No 186 >COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism] Probab=41.82 E-value=31 Score=16.47 Aligned_cols=123 Identities=22% Similarity=0.234 Sum_probs=68.6 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH----HHHCCCCEE------------------------------EEEEEHHC----C Q ss_conf 887499995881698999999999----998099826------------------------------54530103----8 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADM----LDTLGIDYE------------------------------ARIISAHR----T 44 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~----L~~~gI~~~------------------------------~~V~SAHR----~ 44 (165) |..|++|+..+ -|-|-|+-+..- +..+|++.- ....|+.+ + T Consensus 1 ~~kkIaIlTSG-GdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssr~~~~~~ 79 (347) T COG0205 1 MMKKIAILTSG-GDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347) T ss_pred CCCEEEEECCC-CCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCEECCHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 98369998468-89830769999999999976978999943323420786121442014679865986875478887656 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHHHHHHCCCCEEEECCCCC-------CCCC-----------CCCHHHHH Q ss_conf 799998898765359829999726-7668511346522420366125776-------6675-----------00169984 Q gi|254780157|r 45 PDRLIEFAKNARFEGFKLIIAGAG-GAAHLPGMIAAMTSLPVLGVPIISQ-------TLGG-----------IDSLLSIV 105 (165) Q Consensus 45 p~~l~~~~~~~~~~~~~viIa~AG-~aaaLpgvva~~t~~PVIgVP~~~~-------~~~G-----------~dallS~v 105 (165) ++.....+++++..+++.+|.+-| .|..=+-.++-+-.+||||+|-.-+ .--| +|.|-.+. T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDGS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dta 159 (347) T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTA 159 (347) T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 77999999999983998899978887389999999735986896688702788645267558889999999999999997 Q ss_pred HCCCCCCCEEEECCCCCCHHHHHHHH Q ss_conf 03569862044316753122899999 Q gi|254780157|r 106 QMPAGVPVGTMAIGQSGAINASLLAV 131 (165) Q Consensus 106 qMP~Gvpvatv~vg~~~~~NAal~A~ 131 (165) ..++.+-+.-| .|.+ |+++|. T Consensus 160 ssh~r~~iveV-MGR~----aG~lAl 180 (347) T COG0205 160 SSHERIFIVEV-MGRH----AGWLAL 180 (347) T ss_pred HCCCCEEEEEE-CCCC----HHHHHH T ss_conf 57687899996-2868----259999 No 187 >cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=41.55 E-value=32 Score=16.44 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=53.8 Q ss_pred CCCCCHHH--HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH--HHCCCCEEE Q ss_conf 88169899--99999999980998265453010387999988987653598299997267668511346--522420366 Q gi|254780157|r 12 GSQSDWKI--MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA--AMTSLPVLG 87 (165) Q Consensus 12 GS~SD~~~--~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva--~~t~~PVIg 87 (165) |..+++-. -+.+.+..+++|+++ .+..++-.+.+-.+.++++..+++++||...--..++...+. .---.|||. T Consensus 8 g~~~~f~~~~~~Gae~aA~e~Gv~v--~~~~a~~D~~~Q~~~Ie~~I~~gvD~Iiv~p~d~~a~~~~~~~A~~aGIpVV~ 85 (272) T cd06313 8 GLQATWCAQGKQAADEAGKLLGVDV--TWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVID 85 (272) T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEE--EEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE T ss_conf 8889789999999999999819989--99869999999999999999859999999688878999999999986998999 Q ss_pred ECC Q ss_conf 125 Q gi|254780157|r 88 VPI 90 (165) Q Consensus 88 VP~ 90 (165) +-. T Consensus 86 ~d~ 88 (272) T cd06313 86 MGT 88 (272) T ss_pred ECC T ss_conf 747 No 188 >PRK07097 gluconate 5-dehydrogenase; Provisional Probab=41.14 E-value=32 Score=16.40 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=40.5 Q ss_pred CCCCCEEEEEECCCCC----------------------HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH- Q ss_conf 9988749999588169----------------------89999999999980998265453010387999988987653- Q gi|254780157|r 1 MNIAPPVAIIMGSQSD----------------------WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF- 57 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD----------------------~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~- 57 (165) ++.+-||++|.|+.+. ..-.+++.+.++..|......+ .=...++.+.++.++..+ T Consensus 6 f~l~gK~alVTG~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~~~~~~~~~~~g~~~~~~~-~Dvt~~~~v~~~~~~~~~~ 84 (265) T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAEAGATIVFNDIKQELVDKGLAAYRELGIEAHGYV-CDVTDEDGIQAMVAQIEKE 84 (265) T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEE-ECCCCHHHHHHHHHHHHHH T ss_conf 198999899958576899999999998699999995998999999999995499179999-3289999999999999998 Q ss_pred -CCCEEEEEEECCCCC Q ss_conf -598299997267668 Q gi|254780157|r 58 -EGFKLIIAGAGGAAH 72 (165) Q Consensus 58 -~~~~viIa~AG~aaa 72 (165) ..++++|.-||.... T Consensus 85 ~g~iDiLVnNAG~~~~ 100 (265) T PRK07097 85 VGVIDILVNNAGIIRR 100 (265) T ss_pred CCCCCEEEECCCCCCC T ss_conf 2999899989989999 No 189 >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou Probab=40.91 E-value=32 Score=16.38 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=32.1 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHH Q ss_conf 995881698999999999998099826545301038799998898 Q gi|254780157|r 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAK 53 (165) Q Consensus 9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~ 53 (165) |++=|.++=|..+++...|++.||+|+..-+.. .++...++.+ T Consensus 2 I~iYt~~~C~~C~~ak~~L~~~gi~y~~~di~~--d~~~~~~l~~ 44 (73) T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDE--DPEALEELKK 44 (73) T ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC--CHHHHHHHHH T ss_conf 999918999779999999998399049998799--9999999998 No 190 >PRK13938 phosphoheptose isomerase; Provisional Probab=40.85 E-value=23 Score=17.30 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=32.2 Q ss_pred EEEEEEHHCCHHHHHHHHHH---HHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 65453010387999988987---6535982999972676685113465224 Q gi|254780157|r 35 EARIISAHRTPDRLIEFAKN---ARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 35 ~~~V~SAHR~p~~l~~~~~~---~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) ..++.+..-.++.+.+..+. .-.+|-++|+++-|+|++.+.-.++.-. T Consensus 18 ~~~~~~~~~~~~~i~~~~~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~el~ 68 (196) T PRK13938 18 KTRILNDRVLLEAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELT 68 (196) T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH T ss_conf 999982522099999999999999987998999968688999999999986 No 191 >PRK10073 predicted glycosyl transferase; Provisional Probab=40.66 E-value=33 Score=16.35 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=40.3 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-CEEEEE---EEHHCCHHHHHHHHHHH Q ss_conf 99887499995881698999999999998099-826545---30103879999889876 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI-DYEARI---ISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI-~~~~~V---~SAHR~p~~l~~~~~~~ 55 (165) |+-+|+|.||+--..-....++|.+.+-.... ++|+-+ .|--.+++-+.+|.+.. T Consensus 2 m~~~P~vSiiiP~YN~e~yl~~cl~Si~~Qt~~~~EiIiVdDgStD~s~~i~~~~~~~~ 60 (329) T PRK10073 2 MNSTPKLSIIVPLYNAGKDFRACMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENY 60 (329) T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC T ss_conf 99999789999288988999999999980899997999998999825899999998129 No 192 >PRK13609 diacylglycerol glucosyltransferase; Provisional Probab=40.53 E-value=33 Score=16.34 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=23.9 Q ss_pred CCCCCEEEEEECCCC--CHHHHHHHHHHHHHCCCC Q ss_conf 998874999958816--989999999999980998 Q gi|254780157|r 1 MNIAPPVAIIMGSQS--DWKIMKYAADMLDTLGID 33 (165) Q Consensus 1 m~~~pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~ 33 (165) ||.+|||.|+++|.- -...++...+.|++.|.+ T Consensus 1 ~~~~kKVLILtas~G~GH~~AA~AL~e~l~~~~~~ 35 (388) T PRK13609 1 MIKNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIK 35 (388) T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 99899799997888827899999999999835998 No 193 >cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). Probab=40.26 E-value=33 Score=16.31 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=19.8 Q ss_pred CCE-EEEEEECCCCCCHHHHHHHCCCCEEEEC Q ss_conf 982-9999726766851134652242036612 Q gi|254780157|r 59 GFK-LIIAGAGGAAHLPGMIAAMTSLPVLGVP 89 (165) Q Consensus 59 ~~~-viIa~AG~aaaLpgvva~~t~~PVIgVP 89 (165) +.+ +|..+.|++.-|+-++...-...|+.+. T Consensus 52 ~Adliv~~G~~lE~wl~k~~~~~~~~~~~~~~ 83 (286) T cd01019 52 EADLVVWIGPDLEAFLDKVLQGRKKGKVLTLA 83 (286) T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 69999996997246899999747788837853 No 194 >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed Probab=40.20 E-value=33 Score=16.31 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=18.5 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 9887499995881698999999999998099 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) +.+-|+++|.|+.+ -+...+++.|-+-|. T Consensus 3 ~L~gK~alITGgs~--GIG~aia~~la~~G~ 31 (253) T PRK12826 3 DLMGRVALVTGAAR--GIGRAIAVRFAADGA 31 (253) T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCC T ss_conf 88998899948977--899999999998799 No 195 >PRK07074 short chain dehydrogenase; Provisional Probab=40.17 E-value=33 Score=16.30 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=15.0 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCC Q ss_conf 8749999588169899999999999809 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLG 31 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~g 31 (165) |-||++|.|+.+ -+...+++.|-+.| T Consensus 1 TnKvalITGgs~--GIG~aia~~la~~G 26 (256) T PRK07074 1 TSRTALVTGAAG--GIGQALARRFLAAG 26 (256) T ss_pred CCCEEEEECCCC--HHHHHHHHHHHHCC T ss_conf 998899988468--99999999999869 No 196 >PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Probab=40.09 E-value=33 Score=16.30 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCHHHH--H-----HHCCCCEEEECCC Q ss_conf 9998898765359829999726766851134--6-----5224203661257 Q gi|254780157|r 47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMI--A-----AMTSLPVLGVPII 91 (165) Q Consensus 47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv--a-----~~t~~PVIgVP~~ 91 (165) .+....++.+..++++++++- +.+.+-++- + -....+|||+|=. T Consensus 100 ~~~~~~e~L~~~gId~L~~IG-GDgS~~~A~~La~~~~~~~~~i~VVGIPKT 150 (403) T PRK06555 100 PLRVAAERLASDGVDILHTIG-GDDTNTTAADLAAYLAANGYDLTVVGLPKT 150 (403) T ss_pred HHHHHHHHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 999999999982999999988-805999999999999973999528961455 No 197 >pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis. Probab=39.92 E-value=33 Score=16.28 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=37.2 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 1698999999999998099826545301038799998898765 Q gi|254780157|r 14 QSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 14 ~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) +.|...+++|.++.+++||+..=..++--..|+.+.+++++.. T Consensus 112 DGD~~YL~~Cl~~Ykql~i~a~G~~i~E~eqP~~i~~Ll~~~~ 154 (287) T pfam05582 112 DGDPEYLDKCLKVYKQLGLPAVGVHISEKEQPEKIESLLEKYR 154 (287) T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHHC T ss_conf 4989999999999997198458998360125299999998728 No 198 >TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction. Probab=39.82 E-value=34 Score=16.27 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=23.6 Q ss_pred HHHHHHHHHH-HCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCC Q ss_conf 9999999999-8099826545-3010387999988987653598 Q gi|254780157|r 19 IMKYAADMLD-TLGIDYEARI-ISAHRTPDRLIEFAKNARFEGF 60 (165) Q Consensus 19 ~~~~a~~~L~-~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~ 60 (165) +...++.+|+ +||++|...+ ++...|.+.+.++....+..|. T Consensus 225 ~G~~aA~YL~E~Fg~p~i~~~PiGv~~T~~f~~~i~~~l~~~G~ 268 (562) T TIGR01278 225 IGLMAAEYLKEKFGIPYITETPIGVNATRRFIREIAALLNQAGA 268 (562) T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 89999999987458850121777668899999999999986488 No 199 >PRK07041 short chain dehydrogenase; Provisional Probab=39.76 E-value=34 Score=16.26 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=33.7 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 9988749999588169899999999999809982654530103879999889876 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |+++-|+++|.|+.|. +...+++.|-+-|-. |+-..|+++++.+..++. T Consensus 3 ~~l~gK~~lITGgs~G--IG~aia~~la~~Ga~----V~i~~r~~~~l~~~~~~~ 51 (240) T PRK07041 3 MSLNDQKVLVVGGSSG--IGLAAARAFAARGAD----VTIASRSRERLAAAARAL 51 (240) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHH T ss_conf 8859998999577888--999999999987999----999959889999999984 No 200 >PRK06125 short chain dehydrogenase; Provisional Probab=39.63 E-value=34 Score=16.25 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=35.3 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC-------------------------EEEEEEEHHCCHHHHHHHHHHH Q ss_conf 998874999958816989999999999980998-------------------------2654530103879999889876 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID-------------------------YEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~-------------------------~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |+++-|+++|.|+.+ -+...+++.|-+-|.. .....+- ...++.+.++.+.. T Consensus 3 ~~l~gK~alITG~s~--GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D-~~~~~~~~~~~~~~ 79 (259) T PRK06125 3 LHLAGKRVLITGASK--GIGAAAAEAFAAEGCHLVLAARDADALAALAADLRAAHGVDVAVHALD-LSSPEAREQLAAEA 79 (259) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHH T ss_conf 886999899968776--899999999998799899997988999999999987009866999888-99999999999985 Q ss_pred HHCCCEEEEEEECC Q ss_conf 53598299997267 Q gi|254780157|r 56 RFEGFKLIIAGAGG 69 (165) Q Consensus 56 ~~~~~~viIa~AG~ 69 (165) .+++++|-.||. T Consensus 80 --g~iDiLVnnAG~ 91 (259) T PRK06125 80 --GDIDILVNNAGA 91 (259) T ss_pred --CCCCEEEECCCC T ss_conf --899899976877 No 201 >cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i Probab=39.54 E-value=34 Score=16.24 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=45.4 Q ss_pred EEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 99995881698999---99999999809982654530103879999889876535982999972 Q gi|254780157|r 7 VAIIMGSQSDWKIM---KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA 67 (165) Q Consensus 7 V~Ii~GS~SD~~~~---~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A 67 (165) |++|.-+-+|--++ +.+...+.+.| |.+-++..+..+++..++++.+..++++-+|... T Consensus 2 IGvivp~l~n~ff~~~~~gi~~~~~~~g--y~~li~~s~~~~~~e~~~l~~l~~~~vdGiIl~~ 63 (273) T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKG--YSLLLASTNNDPERERKCLENMLSQGIDGLIIEP 63 (273) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 8999588765799999999999999869--9899997899989999999999965999899925 No 202 >PRK10703 DNA-binding transcriptional repressor PurR; Provisional Probab=38.91 E-value=35 Score=16.18 Aligned_cols=83 Identities=10% Similarity=0.129 Sum_probs=52.0 Q ss_pred CCEEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCHHHHHH Q ss_conf 8749999588169---899999999999809982654530103879999889876535982999972-676685113465 Q gi|254780157|r 4 APPVAIIMGSQSD---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA-GGAAHLPGMIAA 79 (165) Q Consensus 4 ~pkV~Ii~GS~SD---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A-G~aaaLpgvva~ 79 (165) +..|+++..+.++ ..+++.+...+.+.| |.+.++..+..+++..++++....++++-+|... ......-..+.. T Consensus 59 s~~Igviv~~~~~~~~~~~~~~i~~~~~~~g--y~~~l~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~ 136 (335) T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLSMLEE 136 (335) T ss_pred CCEEEEEECCCCCCEEHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH T ss_conf 7459999547888650654336999999739--97999927898699999999999558877999768899799999997 Q ss_pred HCCCCEEEE Q ss_conf 224203661 Q gi|254780157|r 80 MTSLPVLGV 88 (165) Q Consensus 80 ~t~~PVIgV 88 (165) +...|++-+ T Consensus 137 ~~~iP~V~i 145 (335) T PRK10703 137 YRHIPMVVM 145 (335) T ss_pred HCCCCEEEE T ss_conf 089988999 No 203 >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Probab=38.91 E-value=35 Score=16.18 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=28.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 8874999958816989999999999980998265453010387999988987653598299997 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~ 66 (165) -+|.|.++.|+.-+. + ..|+..||..-..|.|. .+.+.++..|.+.||+- T Consensus 81 ~kv~vv~~agG~P~~-~-----~~Lk~aGikvi~~V~Sv--------~lAk~~~~~GaDavIaE 130 (320) T cd04743 81 IKPTFALIAGGRPDQ-A-----RALEAIGISTYLHVPSP--------GLLKQFLENGARKFIFE 130 (320) T ss_pred CCCCEEEECCCCCHH-H-----HHHHHCCCEEEEECCCH--------HHHHHHHHCCCCEEEEE T ss_conf 699899956889078-7-----99998699799977999--------99999998499999995 No 204 >PRK10680 molybdopterin biosynthesis protein MoeA; Provisional Probab=38.84 E-value=35 Score=16.17 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=45.7 Q ss_pred CCCEEEEEECCCCCHHHHH-------------HHHHHHHHCCCCEE-EEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 8874999958816989999-------------99999998099826-545301038799998898765359829999726 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMK-------------YAADMLDTLGIDYE-ARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~-------------~a~~~L~~~gI~~~-~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG 68 (165) -+|+|+|+.-++-=.+..+ -....|+++|++.. ..++ --+++.+.+.+.++ .+.++++|+-.| T Consensus 176 ~~prV~iisTGdELv~~g~~l~~gqI~dsN~~~l~a~l~~~G~~~~~~g~v--~Dd~~~i~~~l~~a-~~~~DlvIttGG 252 (411) T PRK10680 176 RKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGII--RDDPHALRAAFIEA-DSQADVVISSGG 252 (411) T ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCEEEEECCC--CCCHHHHHHHHHHH-HHCCCEEEEECC T ss_conf 077899992345556889889998187446999999999789889996873--78899999999976-512898998477 Q ss_pred CCC----CCHHHHHHHCCCCEEEE Q ss_conf 766----85113465224203661 Q gi|254780157|r 69 GAA----HLPGMIAAMTSLPVLGV 88 (165) Q Consensus 69 ~aa----aLpgvva~~t~~PVIgV 88 (165) -|. +...++..+-..-+-+| T Consensus 253 vS~G~~D~v~~~l~~~G~~~f~~V 276 (411) T PRK10680 253 VSVGEADYTKTILEELGEIAFWKL 276 (411) T ss_pred CCCCCCHHHHHHHHHCCCCCCCEE T ss_conf 658863249999997386420517 No 205 >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. Probab=38.37 E-value=35 Score=16.12 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=30.8 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHH Q ss_conf 958816989999999999980998265453010387999988987 Q gi|254780157|r 10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKN 54 (165) Q Consensus 10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~ 54 (165) ++=|++.=|+...|...|++.||+|+..-+.- .|++..++.+. T Consensus 4 ~IYsk~~CpyC~~AK~lL~~kgi~y~ei~l~~--~~~~~~~l~~~ 46 (73) T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLPYVEINIDI--FPERKAELEER 46 (73) T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHH T ss_conf 99918999679999999998799649998889--98999999997 No 206 >cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits Probab=38.20 E-value=35 Score=16.11 Aligned_cols=119 Identities=15% Similarity=0.177 Sum_probs=72.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH-----CCCCEEEEEEEHHCCHHHHH-HHHHHHHHCCCEEEEEEECCC----CCCHH Q ss_conf 499995881698999999999998-----09982654530103879999-889876535982999972676----68511 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDT-----LGIDYEARIISAHRTPDRLI-EFAKNARFEGFKLIIAGAGGA----AHLPG 75 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~-----~gI~~~~~V~SAHR~p~~l~-~~~~~~~~~~~~viIa~AG~a----aaLpg 75 (165) .|+.+..+.+..+..+.+..-+.. .++.++....+--++|..+. ..++.++.+....++..-|.. +|.-. T Consensus 4 nig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~vc~~l~~~~v~~iv~~~~~~~~~~a~~ls 83 (362) T cd06367 4 NIGVVLSGSSSEPAFRDAVTAANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDEEAVAQILD 83 (362) T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHH T ss_conf 79999847733799999862014554466666236899972799899999999987448379999558997531446888 Q ss_pred HHHHHCCCCEEEECC----C-CC-------------CCCCCCCHHHHHHCCCCCCCEEEECCCCCCH Q ss_conf 346522420366125----7-76-------------6675001699840356986204431675312 Q gi|254780157|r 76 MIAAMTSLPVLGVPI----I-SQ-------------TLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 (165) Q Consensus 76 vva~~t~~PVIgVP~----~-~~-------------~~~G~dallS~vqMP~Gvpvatv~vg~~~~~ 124 (165) -+++.+..|||+.-- . +. .....++++++++.=.=--|..+....+++. T Consensus 84 ~~s~~~~vPvis~~~~~~~~~s~k~~~~~Flrt~psd~~Qa~ai~~il~~y~W~~v~~i~sdd~~g~ 150 (362) T cd06367 84 FTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYR 150 (362) T ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHH T ss_conf 8741577888984558876456667675068727985999999999999879969999998475568 No 207 >cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers. Probab=38.00 E-value=36 Score=16.09 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=30.8 Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-------CCCCEEEECCC Q ss_conf 38799998898765359829999726766851134652-------24203661257 Q gi|254780157|r 43 RTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-------TSLPVLGVPII 91 (165) Q Consensus 43 R~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-------t~~PVIgVP~~ 91 (165) ++++...+..++.+..+++.+|.+-| .+.+-++-.-. ...||||+|-. T Consensus 76 ~~~~~~~~~~~~l~~~~Id~Li~IGG-dgS~~~a~~L~~~~~~~~~~i~vvgIPkT 130 (338) T cd00363 76 RTEEGRAKAAENLKKHGIDALVVIGG-DGSYTGADLLTEEWPSKYQGFNVIGLPGT 130 (338) T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHHHCCCCCCEEEEECC T ss_conf 78677899999999829998999789-26999999999988852899518984103 No 208 >PRK06197 short chain dehydrogenase; Provisional Probab=37.84 E-value=36 Score=16.07 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=23.1 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC Q ss_conf 98874999958816989999999999980998 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGID 33 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~ 33 (165) +++=||+||.|++| -+..+++..|.+.|-. T Consensus 13 DL~GK~~lITGa~s--GIG~~~A~~La~~ga~ 42 (306) T PRK06197 13 DQSGRVAVVTGANT--GLGYETAAALAAKGAH 42 (306) T ss_pred CCCCCEEEECCCCC--HHHHHHHHHHHHCCCE T ss_conf 98999999916895--9999999999978498 No 209 >KOG1205 consensus Probab=37.74 E-value=36 Score=16.06 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=43.3 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHH-HHHHHHH------------------------ Q ss_conf 998874999958816989999999999980998265453010387999-9889876------------------------ Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRL-IEFAKNA------------------------ 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l-~~~~~~~------------------------ 55 (165) ++++.||++|.|..|- +.+.++..|-+.|..- +.++..-|.++++ ++..+.. T Consensus 8 e~~~~kvVvITGASsG--IG~~lA~~la~~G~~l-~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~ 84 (282) T KOG1205 8 ERLAGKVVLITGASSG--IGEALAYELAKRGAKL-VLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEW 84 (282) T ss_pred HHHCCCEEEEECCCCH--HHHHHHHHHHHCCCCE-EEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH T ss_conf 8738988999578717--8899999998677734-774243202899999999747867647996765887889999999 Q ss_pred ---HHCCCEEEEEEECCCC Q ss_conf ---5359829999726766 Q gi|254780157|r 56 ---RFEGFKLIIAGAGGAA 71 (165) Q Consensus 56 ---~~~~~~viIa~AG~aa 71 (165) +-.+.|+.|.=||++- T Consensus 85 ~~~~fg~vDvLVNNAG~~~ 103 (282) T KOG1205 85 AIRHFGRVDVLVNNAGISL 103 (282) T ss_pred HHHHCCCCCEEEECCCCCC T ss_conf 9986588888984686565 No 210 >PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=37.64 E-value=36 Score=16.05 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=44.5 Q ss_pred CEEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHC-----CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH Q ss_conf 7499995--88169899999999999809982654530103-----8799998898765359829999726766851134 Q gi|254780157|r 5 PPVAIIM--GSQSDWKIMKYAADMLDTLGIDYEARIISAHR-----TPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI 77 (165) Q Consensus 5 pkV~Ii~--GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR-----~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv 77 (165) .+|+|+. ++..-...+++....|++.|+++-+.--.+.. .|.. .+ ++ ..+.++.+|+. |+.+.+-.+. T Consensus 6 k~Vgiv~k~~~~~~~~~~~~l~~~L~~~g~~v~~e~~~a~~~~~~~~~~~--~~-~~-~~~~~Dlvi~l-GGDGTlL~~a 80 (291) T PRK02155 6 RTVALVGRYQTPGIAEPLEALAACIAKRGFEVVFEADTARNTGLTGYPAL--TP-AE-IGARADVAVVL-GGDGTMLGIG 80 (291) T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCC--CH-HH-HCCCCCEEEEE-CCCHHHHHHH T ss_conf 89999914898689999999999999788999995557776399887747--97-99-46376789997-6788999999 Q ss_pred H--HHCCCCEEEECC Q ss_conf 6--522420366125 Q gi|254780157|r 78 A--AMTSLPVLGVPI 90 (165) Q Consensus 78 a--~~t~~PVIgVP~ 90 (165) - .....||+|+=. T Consensus 81 ~~~~~~~~PilGiN~ 95 (291) T PRK02155 81 RQLAPYGTPLIGINH 95 (291) T ss_pred HHHHCCCCCEEEEEC T ss_conf 987115996899854 No 211 >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association. Probab=37.38 E-value=37 Score=16.03 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=43.9 Q ss_pred CCCEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEH-HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH Q ss_conf 8874999958816--98999999999998099826545301-038799998898765359829999726766851 Q gi|254780157|r 3 IAPPVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISA-HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP 74 (165) Q Consensus 3 ~~pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SA-HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp 74 (165) .+.++.++.||.= |...+++.++.|++-.|..++-..+- .-++++|..|++....++---+|.+.-+..-|+ T Consensus 106 ~~qRIv~FVgSPi~~~ek~l~~laKklKKnnV~vDII~FGe~~~n~~kL~~f~~~vn~~~~Shlv~ippg~~lLS 180 (187) T cd01452 106 QKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPGENLLS 180 (187) T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHH T ss_conf 544799997898755789999999987555853589994688899899999999845899825999479986456 No 212 >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. Probab=37.29 E-value=37 Score=16.02 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=23.9 Q ss_pred EEEEECCCC----CHHHHHHH-HHHHHHCCCCEE-EEE--------------EEHHCCHHHHHHHHHHHH Q ss_conf 999958816----98999999-999998099826-545--------------301038799998898765 Q gi|254780157|r 7 VAIIMGSQS----DWKIMKYA-ADMLDTLGIDYE-ARI--------------ISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 7 V~Ii~GS~S----D~~~~~~a-~~~L~~~gI~~~-~~V--------------~SAHR~p~~l~~~~~~~~ 56 (165) |-+|=||.| ++..+++- ...++.|.|..+ +|| ...|.+...+.+-++... T Consensus 6 vFllD~S~Svg~~nF~~~k~Fv~~lv~~f~I~~~~trVgvv~ys~~~~~~f~l~~~~~k~~l~~aI~~i~ 75 (224) T cd01475 6 VFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRME 75 (224) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 9999488998989999999999999985687998529999996582789996688678899999998636 No 213 >pfam06258 DUF1022 Protein of unknown function (DUF1022). This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown. Probab=37.27 E-value=37 Score=16.02 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=59.5 Q ss_pred CCEEEEEECCCCC-----HH----HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH Q ss_conf 8749999588169-----89----99999999998099826545301038799998898765359829999726766851 Q gi|254780157|r 4 APPVAIIMGSQSD-----WK----IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP 74 (165) Q Consensus 4 ~pkV~Ii~GS~SD-----~~----~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp 74 (165) +|+|+++.|++|- .. +.++....++..| ....|..=-|||+.+.+.+++.......+++--....+-.. T Consensus 143 ~p~i~vLIGG~sk~~~~~~~~~~~l~~~i~~l~~~~~--~~l~it~SRRTP~~~~~~l~~~~~~~~~~~~~~~~~~Npy~ 220 (308) T pfam06258 143 RPRVAVLVGGPSKHFRWDADAARRLLEQLQALLEAYG--GSLLITTSRRTPEAAEAALRKLLGPRPGLYVWDGTGPNPYF 220 (308) T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHH T ss_conf 8769999655787888899999999999999998779--72999946889699999999860899728982798864589 Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH--CCCCCCCEEEECC Q ss_conf 13465224203661257766675001699840--3569862044316 Q gi|254780157|r 75 GMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQ--MPAGVPVGTMAIG 119 (165) Q Consensus 75 gvva~~t~~PVIgVP~~~~~~~G~dallS~vq--MP~Gvpvatv~vg 119 (165) +.++.--. |=|-.++- ||+. +-.|.||....+. T Consensus 221 ~~L~~Ad~---iiVT~DSv---------SMisEA~~tGkPV~i~~l~ 255 (308) T pfam06258 221 GFLAWADA---VVVTADSV---------SMVSEAAATGAPVGVLPLE 255 (308) T ss_pred HHHHHCCE---EEEECCHH---------HHHHHHHHCCCCEEEEECC T ss_conf 99985886---89906718---------8999998649977999677 No 214 >pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Probab=37.09 E-value=37 Score=16.00 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=45.0 Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH-H--CCH----------HHHHHHHHHHHHCCCEEE-EEEECCCCCC Q ss_conf 9995881698999999999998099826545301-0--387----------999988987653598299-9972676685 Q gi|254780157|r 8 AIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA-H--RTP----------DRLIEFAKNARFEGFKLI-IAGAGGAAHL 73 (165) Q Consensus 8 ~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA-H--R~p----------~~l~~~~~~~~~~~~~vi-Ia~AG~aaaL 73 (165) +++ +..|+..+.++..+.+.....+. +.+.+. + |++ +.+.+.++..+..+++++ |++-. +..+ T Consensus 2 G~i-~p~~~~~~~~~~~~~~p~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d~iviaCnt-~~~~ 78 (212) T pfam01177 2 GLI-SPNSTLTVTRELVRALPAEVGPG-VYLHDTRIPPRTEEILDGAESPLERLLEAARRLAKAGADAIVIACNT-AHAL 78 (212) T ss_pred CEE-ECCHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCH-HHHH T ss_conf 357-63528999999999655467982-99967999987667765454279999999999986799999991765-9999 Q ss_pred HHHHHHHCCCCEEEE Q ss_conf 113465224203661 Q gi|254780157|r 74 PGMIAAMTSLPVLGV 88 (165) Q Consensus 74 pgvva~~t~~PVIgV 88 (165) -+.+...+..||++. T Consensus 79 ~~~~~~~~~ipvi~~ 93 (212) T pfam01177 79 AGELREATDIPVIGI 93 (212) T ss_pred HHHHHHHCCCCEEEH T ss_conf 999998729989854 No 215 >cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute. Probab=36.75 E-value=37 Score=15.96 Aligned_cols=82 Identities=22% Similarity=0.211 Sum_probs=49.5 Q ss_pred CEEEEEECCCC---CH------HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH Q ss_conf 74999958816---98------9999999999980998265453010387999988987653598299997267668511 Q gi|254780157|r 5 PPVAIIMGSQS---DW------KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG 75 (165) Q Consensus 5 pkV~Ii~GS~S---D~------~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpg 75 (165) |||.++.||.. .. ...++..+.|++.+++.... -..-.+++...+..+.+...+++.+|..-.-=+-=.. T Consensus 1 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~vdgli~~~~tf~~~~~ 79 (452) T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDK-PEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAKM 79 (452) T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHH T ss_conf 957999600445685799999999999999970699739988-8404899999999999877599799990586687799 Q ss_pred HHH--HHCCCCEEE Q ss_conf 346--522420366 Q gi|254780157|r 76 MIA--AMTSLPVLG 87 (165) Q Consensus 76 vva--~~t~~PVIg 87 (165) ++. ....+||+= T Consensus 80 ~~~~~~~~~~Pvl~ 93 (452) T cd00578 80 WIAGLSELRKPVLL 93 (452) T ss_pred HHHHHHHCCCCEEE T ss_conf 99999857998999 No 216 >cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior. Probab=36.68 E-value=37 Score=15.96 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=19.5 Q ss_pred HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH Q ss_conf 03879999889876535982999972676685113 Q gi|254780157|r 42 HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM 76 (165) Q Consensus 42 HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv 76 (165) .|.++--.+-.+++...+++.+|++-| .+.|-|. T Consensus 80 F~~~egr~~a~~nL~~~gIdaLiVIGG-DGSltGA 113 (762) T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGG-DGSLTGA 113 (762) T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHH T ss_conf 457768999999999809988999879-5378777 No 217 >COG1929 Glycerate kinase [Carbohydrate transport and metabolism] Probab=36.57 E-value=38 Score=15.94 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=48.5 Q ss_pred EEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCC------CCCHHHHHHHCC---CCEEEECCCCC------CCCCCCC Q ss_conf 54530103879999889876535982999972676------685113465224---20366125776------6675001 Q gi|254780157|r 36 ARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA------AHLPGMIAAMTS---LPVLGVPIISQ------TLGGIDS 100 (165) Q Consensus 36 ~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~a------aaLpgvva~~t~---~PVIgVP~~~~------~~~G~da 100 (165) .++.|-|-.-.++..+.+.. .+++.+|++-|+- +--|.-|+.... +|||+.-=+.+ +..|+|+ T Consensus 263 a~l~~Gi~iV~~~~~le~~v--~daDLVITGEGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs~~~~~~~v~~~GI~A 340 (378) T COG1929 263 AELKSGIEIVLEATNLEDAV--KDADLVITGEGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGSLGEDYEVVHQEGIDA 340 (378) T ss_pred CCCCCCHHHHHHHHCHHHHH--CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCHH T ss_conf 75456379999874799761--6698899678765210137861169997516618988999233346853666648145 Q ss_pred HHHHHHCCCCCCCE Q ss_conf 69984035698620 Q gi|254780157|r 101 LLSIVQMPAGVPVG 114 (165) Q Consensus 101 llS~vqMP~Gvpva 114 (165) .+|++.++.....+ T Consensus 341 vFsi~~~~~~Le~a 354 (378) T COG1929 341 VFSILERIGSLEEA 354 (378) T ss_pred HHHCCCCCCCHHHH T ss_conf 66414677789999 No 218 >TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis. Probab=36.50 E-value=38 Score=15.94 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=49.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHH----HCCCCEE------------------------------EEEEEHHCCHH----- Q ss_conf 49999588169899999999999----8099826------------------------------54530103879----- Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLD----TLGIDYE------------------------------ARIISAHRTPD----- 46 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~----~~gI~~~------------------------------~~V~SAHR~p~----- 46 (165) |++|+.-+ =|-|=|+-|....- .+|++.- +..-|| |.|+ T Consensus 1 kIgiLTSG-GDAPGMNaAIRavvr~A~~~g~EVyG~~~GY~GLi~g~i~~l~~~~V~~Ii~~GGT~L~tA-R~~EFK~~e 78 (302) T TIGR02482 1 KIGILTSG-GDAPGMNAAIRAVVRTAIYQGIEVYGIRRGYKGLINGKIVPLKSKAVSGIISKGGTILGTA-RCPEFKTEE 78 (302) T ss_pred CEEEECCC-CCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEECCCCCCHHCCCCCCCCEEECC-CCCCCCCHH T ss_conf 91675178-8870256899999999998197068987354213044134246644001001588333114-785456878 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC--CCEEEECCCCC Q ss_conf 999889876535982999972676685113465224--20366125776 Q gi|254780157|r 47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS--LPVLGVPIISQ 93 (165) Q Consensus 47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~--~PVIgVP~~~~ 93 (165) -=..=+++++..|++-.|++ |+.+.+.|.-.-+-. .||||+|..-+ T Consensus 79 vR~kA~~nLK~~GI~~LVVi-GGDGSy~GA~~L~~~gg~~~iGlPGTID 126 (302) T TIGR02482 79 VREKAVENLKKLGIEALVVI-GGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (302) T ss_pred HHHHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 99999999887488668998-6844068899999717984787458502 No 219 >PRK07370 enoyl-(acyl carrier protein) reductase; Validated Probab=36.48 E-value=38 Score=15.93 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=42.5 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE-------------------------EEHHCCHHHHHHHHHHH Q ss_conf 99887499995881698999999999998099826545-------------------------30103879999889876 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI-------------------------ISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V-------------------------~SAHR~p~~l~~~~~~~ 55 (165) |+++-|+++|.|..+..-+...+++.|.+.|-..-+.. ..--+.++.+.++.+.. T Consensus 3 ~~L~GK~alVTGaag~~GiG~aia~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 82 (259) T PRK07370 3 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCNVQDDAQIEEVFETI 82 (259) T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 89999989997989985799999999998699999994787013589999999841286489991289999999999999 Q ss_pred HH--CCCEEEEEEECCCC Q ss_conf 53--59829999726766 Q gi|254780157|r 56 RF--EGFKLIIAGAGGAA 71 (165) Q Consensus 56 ~~--~~~~viIa~AG~aa 71 (165) .+ ..++++|-.||.++ T Consensus 83 ~~~~G~iDilVnna~~~~ 100 (259) T PRK07370 83 KQKWGQLDILVHCLAFAG 100 (259) T ss_pred HHHHCCCCEEEEEECCCC T ss_conf 998589877986301146 No 220 >PRK10638 glutaredoxin 3; Provisional Probab=36.36 E-value=38 Score=15.92 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=44.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCE Q ss_conf 49999588169899999999999809982654530103879999889876535982999972676685113465224203 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPV 85 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PV 85 (165) +|.|. |++.=|+..+|...|+..||+|+..-.. +.++.-.++.+. .+.++.|- T Consensus 3 ~V~Iy--sk~~CpyC~~Ak~lL~~~gi~y~ei~v~--~~~~~~~~l~~~-----------------------tg~~TVPq 55 (83) T PRK10638 3 NIEIY--TKATCPFCHRAKALLNSKGVSFQEIPID--GDAAKREEMIKR-----------------------SGRTTVPQ 55 (83) T ss_pred CEEEE--ECCCCHHHHHHHHHHHHCCCCCEEEECC--CCHHHHHHHHHH-----------------------CCCCCCCE T ss_conf 88999--8999967999999999759987699867--999999999973-----------------------69996196 Q ss_pred EEECCCCCCCCCCCCHHHHHH Q ss_conf 661257766675001699840 Q gi|254780157|r 86 LGVPIISQTLGGIDSLLSIVQ 106 (165) Q Consensus 86 IgVP~~~~~~~G~dallS~vq 106 (165) |= +.+...+|.|-|.+.-+ T Consensus 56 If--I~g~~IGG~~dl~~L~~ 74 (83) T PRK10638 56 IF--IDAQHIGGCDDLYALDA 74 (83) T ss_pred EE--ECCEEEECHHHHHHHHH T ss_conf 99--99999957899999998 No 221 >TIGR02909 spore_YkwD uncharacterized protein, YkwD family; InterPro: IPR014258 This entry represents a subgroup of the SCP-like extracellular domain which is found only in bacteria capable of endospore formation. Proteins in this entry include YkwD of Bacillus subtilis. This domain is generally found at the C-terminal region of these proteins, while the N-terminal region sometimes contains a domain homologous to the spore coat assembly protein SafA (IPR014248 from INTERPRO).. Probab=36.29 E-value=19 Score=17.79 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=26.7 Q ss_pred HHHHHHCCC-CEE-E---EEEEHHCCHHHHHHHHHHHH Q ss_conf 999998099-826-5---45301038799998898765 Q gi|254780157|r 24 ADMLDTLGI-DYE-A---RIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 24 ~~~L~~~gI-~~~-~---~V~SAHR~p~~l~~~~~~~~ 56 (165) .+.+++||| +|. + .|++-|+||+++.+=+-+.+ T Consensus 58 F~Mmk~FGik~Y~W~AGENIA~G~~T~~~v~~awMNS~ 95 (129) T TIGR02909 58 FDMMKKFGIKSYRWAAGENIAAGNSTVEAVHQAWMNSP 95 (129) T ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH T ss_conf 68998646643102323543304877889985305872 No 222 >PRK07775 short chain dehydrogenase; Provisional Probab=36.13 E-value=38 Score=15.90 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=23.9 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 88749999588169899999999999809982654530103879999889876 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) ...|+++|.|..| -+...++..|.+-|.. |+-..|..+++.+..++. T Consensus 8 ~~~KtAlVTGAss--GIG~aiA~~la~~G~~----V~l~~R~~e~l~~~~~~l 54 (275) T PRK07775 8 PARRPAIVAGASS--GIGAATAIELAAHGFP----VALGARRVEKCEEIVDKI 54 (275) T ss_pred CCCCEEEEECCCH--HHHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHH T ss_conf 9999799946235--9999999999987998----999989899999999999 No 223 >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional Probab=36.09 E-value=38 Score=15.90 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC Q ss_conf 89999999999980998265453010387999988987653--5982999972676 Q gi|254780157|r 17 WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA 70 (165) Q Consensus 17 ~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a 70 (165) ..-.++..+.++.+|.++...-+ =-+.++.+.++.+...+ ..++++|..||.. T Consensus 39 ~~~~~~~~~~~~~~g~~~~~~~~-Dv~d~~~v~~~~~~~~~~~G~iDiLVnnAg~~ 93 (250) T PRK08063 39 RKAAEETANEIEQLGRKALVVKA-NVGDVEKIKEMFSQIDEHFGRLDVFVNNAASG 93 (250) T ss_pred HHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 89999999999954995899984-79999999999999999809988999878567 No 224 >PRK10116 universal stress protein UspC; Provisional Probab=35.79 E-value=39 Score=15.87 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHC----CCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC-CCC--CCHH---HHHHHCCCCEEE Q ss_conf 999999999980----9982654-5301038799998898765359829999726-766--8511---346522420366 Q gi|254780157|r 19 IMKYAADMLDTL----GIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAG-GAA--HLPG---MIAAMTSLPVLG 87 (165) Q Consensus 19 ~~~~a~~~L~~~----gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG-~aa--aLpg---vva~~t~~PVIg 87 (165) .-+++.+.|+++ ++|.+-. |.+. +.. .++.+.+++.+++.+|++.= ... -|.+ -+--.++.||.- T Consensus 61 ~~e~a~~~L~~l~~~~~~pi~~~~v~~G-~~~---~~I~~~a~e~~~DLIV~G~Hg~~~~~~l~Ssa~~vl~~s~~dVLi 136 (142) T PRK10116 61 MQEETQSFLDELIQKADYPIEKTFIAYG-ELS---EHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLL 136 (142) T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEC-CHH---HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 9999999999999874998158999965-889---999999999699999990598548999988899996369998899 Q ss_pred ECCCC Q ss_conf 12577 Q gi|254780157|r 88 VPIIS 92 (165) Q Consensus 88 VP~~~ 92 (165) ||..+ T Consensus 137 V~l~~ 141 (142) T PRK10116 137 VPLTG 141 (142) T ss_pred EECCC T ss_conf 96588 No 225 >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] Probab=35.75 E-value=39 Score=15.86 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=90.8 Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCE----EEEEEEHHC------CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH Q ss_conf 999588169899999999999809982----654530103------8799998898765359829999726766851134 Q gi|254780157|r 8 AIIMGSQSDWKIMKYAADMLDTLGIDY----EARIISAHR------TPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI 77 (165) Q Consensus 8 ~Ii~GS~SD~~~~~~a~~~L~~~gI~~----~~~V~SAHR------~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv 77 (165) .++.++.......++....++.=++.+ -+-..+-|+ .++++.++.+.+.+++..+.+=+|=..+++..- T Consensus 102 ~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~val- 180 (342) T COG2008 102 LPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVAL- 180 (342) T ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEECCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHC- T ss_conf 3047987787399999976367776558875079861367786664899999999999980995440408898899873- Q ss_pred HHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCC---------------CHHHHHHHHHHHHCCCHHHH Q ss_conf 652242036612577666750016998403569862044316753---------------12289999999706999999 Q gi|254780157|r 78 AAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSG---------------AINASLLAVAILALDDKELT 142 (165) Q Consensus 78 a~~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~---------------~~NAal~A~~Il~~~d~~i~ 142 (165) .. +. ...-.+.|++.=...=--|.|+..+.++... -.-+.++|+|.+..-.+.+| T Consensus 181 --g~-------~~-~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~ 250 (342) T COG2008 181 --GV-------AL-KTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVW 250 (342) T ss_pred --CC-------CH-HHHHHHCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH T ss_conf --98-------88-998742889999131477521325897389999998999998656276654899999999731588 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999984054 Q gi|254780157|r 143 DRLNEWRTQQTISISEYPK 161 (165) Q Consensus 143 ~kl~~~r~~~~~~v~~~~~ 161 (165) .....+...|...+.+.=+ T Consensus 251 ~~~~~Han~mA~~La~~~~ 269 (342) T COG2008 251 RLAADHANAMAARLAEGLE 269 (342) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 8887888999999997653 No 226 >pfam03358 FMN_red NADPH-dependent FMN reductase. Probab=35.54 E-value=39 Score=15.84 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=34.1 Q ss_pred CEEEEEECCCCC----HHHHHHHHHHHHHCCCCEEEEEEEH--------H---CCHHHHHHHHHHHHH Q ss_conf 749999588169----8999999999998099826545301--------0---387999988987653 Q gi|254780157|r 5 PPVAIIMGSQSD----WKIMKYAADMLDTLGIDYEARIISA--------H---RTPDRLIEFAKNARF 57 (165) Q Consensus 5 pkV~Ii~GS~SD----~~~~~~a~~~L~~~gI~~~~~V~SA--------H---R~p~~l~~~~~~~~~ 57 (165) .||.+|.||.+. ...++...+.|++.|+++++.=..- + ..++.+.++.+..++ T Consensus 1 mkil~i~GS~r~~s~t~~l~~~~~~~l~~~g~e~~~idl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 68 (147) T pfam03358 1 MKILVISGSPRKGSNTRKLAEWAAELLEEAGAEVELIDLADLPLPLCDEDLEAGDPDDVQELREKIAA 68 (147) T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 97999976799887699999999999877699259963233467544664565898899999999995 No 227 >cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a Probab=35.51 E-value=39 Score=15.84 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=52.6 Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH--HH Q ss_conf 4999958816989---999999999980998265453010387999988987653598299997267668511346--52 Q gi|254780157|r 6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA--AM 80 (165) Q Consensus 6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva--~~ 80 (165) |+++++-+.+.-- ..+.+.+..+++|++. .+..+. ...+-...++++..++++.||...--+.+++.++. .. T Consensus 1 KIg~~~~tl~npff~~~~~g~~~~A~e~G~~l--~~~~~~-d~~~q~~~ie~~i~qgvd~iii~p~d~~~~~~~v~~A~~ 77 (289) T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFTV--VKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKA 77 (289) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCEE--EEECCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH T ss_conf 98999589988399999999999999849879--997689-969999999999985898899927871001899999998 Q ss_pred CCCCEEEEC Q ss_conf 242036612 Q gi|254780157|r 81 TSLPVLGVP 89 (165) Q Consensus 81 t~~PVIgVP 89 (165) --.|||.+= T Consensus 78 agIpVv~~D 86 (289) T cd01540 78 YNMKVVAVD 86 (289) T ss_pred CCCEEEEEC T ss_conf 798699934 No 228 >PRK13111 trpA tryptophan synthase subunit alpha; Provisional Probab=35.49 E-value=39 Score=15.83 Aligned_cols=122 Identities=25% Similarity=0.328 Sum_probs=62.2 Q ss_pred CHHH--HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC---CHHHHH-------HHCCC Q ss_conf 9899--99999999980998265453010387999988987653598299997267668---511346-------52242 Q gi|254780157|r 16 DWKI--MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH---LPGMIA-------AMTSL 83 (165) Q Consensus 16 D~~~--~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa---Lpgvva-------~~t~~ 83 (165) |+|. .++....+++.|+.. +..++..-+.+|+.++.+.. +|.-..++..|-.+. ++.-+. .+|.. T Consensus 121 DLP~eE~~~~~~~~~~~gi~~-I~lvaPtt~~~Ri~~i~~~s--~gfiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~ 197 (256) T PRK13111 121 DLPPEEAEEFRAAAKKHGIDL-IFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADVADLLARLKAHTDL 197 (256) T ss_pred CCCHHHHHHHHHHHHHCCCEE-EEEECCCCCHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 999788899999999759808-99969999889999999626--985999856776788766628899999999870689 Q ss_pred CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHH Q ss_conf 0366125776667500169984035698620443167531228999999970699-9999999999999999998 Q gi|254780157|r 84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD-KELTDRLNEWRTQQTISIS 157 (165) Q Consensus 84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d-~~i~~kl~~~r~~~~~~v~ 157 (165) || -.| -|+..--..-++-.+.- +.+ ||. .-++++..++ ++..+++.+|-+++++.+. T Consensus 198 Pi-----~vG--FGIs~~e~v~~~~~~aD-GvI-VGS--------aiv~~i~~~~~~~~~~~v~~f~~~lk~~~~ 255 (256) T PRK13111 198 PV-----AVG--FGISTPEQAAAIAEGAD-GVI-VGS--------ALVKIIEAADPEEALAALAEFVKELKAALR 255 (256) T ss_pred CE-----EEE--CCCCCHHHHHHHHCCCC-EEE-ECH--------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHC T ss_conf 75-----885--28899999999974599-999-868--------999999843977789999999999999864 No 229 >TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis .. Probab=35.43 E-value=39 Score=15.83 Aligned_cols=50 Identities=16% Similarity=0.380 Sum_probs=42.3 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE-EEEEE Q ss_conf 169899999999999809982654530103879999889876535982-99997 Q gi|254780157|r 14 QSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK-LIIAG 66 (165) Q Consensus 14 ~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~-viIa~ 66 (165) |-|...+++|.+.-+++|+|..=-+++=-..|+++..+++.+. +| ++|++ T Consensus 120 DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~---PDIlViTG 170 (292) T TIGR02855 120 DGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVR---PDILVITG 170 (292) T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHC---CCEEEEEC T ss_conf 2888899999998866197279999841218088999997309---97899946 No 230 >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a Probab=35.39 E-value=39 Score=15.82 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH Q ss_conf 999999999998099826545301038799998898765359829999726766851 Q gi|254780157|r 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP 74 (165) Q Consensus 18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp 74 (165) -+.+..+..|..-+ ..|...|+....+.++.++ .+++|+++|..+.+. T Consensus 55 iVG~Pla~lL~~~~----atVt~chs~T~~l~~~~~~-----ADIvIsA~G~~~li~ 102 (168) T cd01080 55 IVGKPLAALLLNRN----ATVTVCHSKTKNLKEHTKQ-----ADIVIVAVGKPGLVK 102 (168) T ss_pred CCHHHHHHHHHHCC----CEEEEECCCCCCHHHHHHH-----CCEEEEECCCCCCCC T ss_conf 00899999998489----9799976898897997410-----453554158766378 No 231 >pfam00239 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family (this family) contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase - see pfam02796. Probab=34.80 E-value=40 Score=15.76 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=27.3 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 95881698999999999998099826545301038799998898765359829999 Q gi|254780157|r 10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIA 65 (165) Q Consensus 10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa 65 (165) ++|++.|-|-.++....++++.+=....+.-..|++..+..+.+.....|+.++.. T Consensus 38 ~Sg~~~~Rp~~~~ll~~~~~gd~ivv~~~dRl~R~~~~~~~~~~~l~~~gv~l~~~ 93 (139) T pfam00239 38 VSGKKLDRPGLQRLLADLREGDVLVVTKLDRLGRSLRDLLELLEELREKGVEVVSL 93 (139) T ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 36886788899999972769999999866330289999999999999789889991 No 232 >cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. Probab=34.79 E-value=40 Score=15.76 Aligned_cols=78 Identities=12% Similarity=0.202 Sum_probs=48.1 Q ss_pred EEEEECCCCCH--------HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH Q ss_conf 99995881698--------9999999999980998265453010387999988987653598299997267668511346 Q gi|254780157|r 7 VAIIMGSQSDW--------KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA 78 (165) Q Consensus 7 V~Ii~GS~SD~--------~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva 78 (165) |++|+-+.+|. .+.+.+...+.+.| |.+-++..+...++..++.+....+.++-+|....... ...+. T Consensus 2 IGvivP~~~~~~i~Npff~~l~~gie~~~~~~G--y~lli~~~~~~~~~~~~~~~~l~~~~vDGiIi~~~~~~--~~~~~ 77 (270) T cd06294 2 IGVVLPPSADEAFQNPFFIEVLRGISAVANENG--YDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED--DPIID 77 (270) T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHH T ss_conf 899985786666569899999999999999859--98999918996999999999998279988999579898--49999 Q ss_pred H--HCCCCEEEE Q ss_conf 5--224203661 Q gi|254780157|r 79 A--MTSLPVLGV 88 (165) Q Consensus 79 ~--~t~~PVIgV 88 (165) . ....|++-+ T Consensus 78 ~l~~~~iP~V~i 89 (270) T cd06294 78 YLKEEKFPFVVI 89 (270) T ss_pred HHHHCCCCEEEE T ss_conf 999769999998 No 233 >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection.. Probab=34.76 E-value=17 Score=18.15 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=16.5 Q ss_pred HHHHHHHCCCHHHHHHHHHH Q ss_conf 99999706999999999999 Q gi|254780157|r 129 LAVAILALDDKELTDRLNEW 148 (165) Q Consensus 129 ~A~~Il~~~d~~i~~kl~~~ 148 (165) -||+.|+|+|+++|.-|++| T Consensus 330 ~AAe~LGLtYHQlRg~LkKy 349 (349) T TIGR02974 330 KAAELLGLTYHQLRGLLKKY 349 (349) T ss_pred HHHHHHCCCHHHHHHHHCCC T ss_conf 99987257368999863149 No 234 >PRK08219 short chain dehydrogenase; Provisional Probab=34.71 E-value=40 Score=15.75 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=36.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH--------------------HHCCCEE Q ss_conf 88749999588169899999999999809982654530103879999889876--------------------5359829 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA--------------------RFEGFKL 62 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~--------------------~~~~~~v 62 (165) |..||++|.|+.| -+...+++.|.+-| .+.-.+|..+++.++.++. +...+++ T Consensus 1 m~mKvalITGas~--GIG~aia~~la~~g-----~vv~~~r~~~~l~~l~~~~~~~~~~~Dlt~~~~i~~~~~~~~~iD~ 73 (226) T PRK08219 1 MGMPTALITGASR--GIGAAIARALARTH-----TLLLAGRPSERLDAVAARLGATTWPADLTDPEAIAAAVEPLDRLDV 73 (226) T ss_pred CCCCEEEEECCCH--HHHHHHHHHHHHCC-----CEEEEECCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCE T ss_conf 9789999928464--99999999999699-----8999989889999999970993786057999999999996599889 Q ss_pred EEEEECCCC Q ss_conf 999726766 Q gi|254780157|r 63 IIAGAGGAA 71 (165) Q Consensus 63 iIa~AG~aa 71 (165) +|-.||... T Consensus 74 lVnnAG~~~ 82 (226) T PRK08219 74 LVHNAGVAE 82 (226) T ss_pred EEECCCCCC T ss_conf 998996899 No 235 >PRK10653 D-ribose transporter subunit RbsB; Provisional Probab=34.41 E-value=41 Score=15.72 Aligned_cols=84 Identities=13% Similarity=0.328 Sum_probs=61.7 Q ss_pred CCEEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 87499995881698---999999999998099826545301038799998898765359829999726766851134652 Q gi|254780157|r 4 APPVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 4 ~pkV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) +..++++.-+-++- .+.+.+.+.+++.| |++.+++.+..+++-.++++.+..++++.+|...--+.++...+... T Consensus 26 ~~TIgvivp~i~npff~~v~~gie~~a~~~G--y~l~v~~s~~d~~~q~~~i~~li~~~vdgiii~p~d~~~~~~~~~~a 103 (295) T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLG--YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 103 (295) T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH T ss_conf 9979999489879799999999999999769--98999839999999999999999769988998477706569999999 Q ss_pred --CCCCEEEEC Q ss_conf --242036612 Q gi|254780157|r 81 --TSLPVLGVP 89 (165) Q Consensus 81 --t~~PVIgVP 89 (165) ...|||-+- T Consensus 104 ~~~gIPvV~~d 114 (295) T PRK10653 104 NQANIPVITLD 114 (295) T ss_pred HHCCCEEEEEE T ss_conf 97698199995 No 236 >pfam02954 HTH_8 Bacterial regulatory protein, Fis family. Probab=34.10 E-value=23 Score=17.34 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=18.0 Q ss_pred HHHHHHHCCCHHHHHHHHHH Q ss_conf 99999706999999999999 Q gi|254780157|r 129 LAVAILALDDKELTDRLNEW 148 (165) Q Consensus 129 ~A~~Il~~~d~~i~~kl~~~ 148 (165) -|+++|+++-..++.|+++| T Consensus 23 ~aA~~LGisr~tL~~kmkky 42 (42) T pfam02954 23 KAARLLGISRRTLYRKLKKY 42 (42) T ss_pred HHHHHHCCCHHHHHHHHHHC T ss_conf 99999796999999999739 No 237 >PRK06194 hypothetical protein; Provisional Probab=34.09 E-value=41 Score=15.69 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=33.4 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHHH Q ss_conf 988749999588169899999999999809------------------------98265453010387999988987653 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNARF 57 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~~ 57 (165) +.+-||++|.|+.|- +...++..|-+.| .+.....+ =-..++.+.++.+...+ T Consensus 3 ~l~gKvavITGassG--IG~a~A~~la~~Ga~Vvl~d~~~~~l~~~~~~l~~~g~~v~~~~~-DVsd~~~v~~l~~~~~~ 79 (301) T PRK06194 3 DFAGKVAVITGAASG--FGREFARIGARLGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT-DVSDAAQVEALADAALE 79 (301) T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHHHHHH T ss_conf 989998999273779--999999999987998999979889999999999845984999965-68999999999999999 Q ss_pred --CCCEEEEEEECCC Q ss_conf --5982999972676 Q gi|254780157|r 58 --EGFKLIIAGAGGA 70 (165) Q Consensus 58 --~~~~viIa~AG~a 70 (165) ..++++|-.||.. T Consensus 80 ~fG~iDiLVNNAGi~ 94 (301) T PRK06194 80 RFGAVHLLFNNAGVG 94 (301) T ss_pred HHCCEEEEEECCCCC T ss_conf 839937999557667 No 238 >cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh). Probab=33.83 E-value=42 Score=15.66 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC Q ss_conf 9998898765359829999726766851134652242 Q gi|254780157|r 47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL 83 (165) Q Consensus 47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~ 83 (165) +..+.+.+...++-++|+++.|++++++.-.+..-.. T Consensus 21 ~~~~~i~~~~~~g~kI~~~GNGgSa~~A~H~a~dl~~ 57 (177) T cd05006 21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVK 57 (177) T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC T ss_conf 9999999999879989999687408889999998735 No 239 >cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh Probab=33.70 E-value=42 Score=15.65 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=50.3 Q ss_pred EEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCHHHHHHHCC Q ss_conf 999958816989---9999999999809982654530103879999889876535982999972-676685113465224 Q gi|254780157|r 7 VAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA-GGAAHLPGMIAAMTS 82 (165) Q Consensus 7 V~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A-G~aaaLpgvva~~t~ 82 (165) |+++.-+-++-- +.+.+...+++.| |.+-++..+..+++-.++++.+..++++-+|... ......--.+ .... T Consensus 2 IGvivp~i~npff~~~~~gie~~~~~~G--y~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIl~~~~~~~~~~~~l-~~~~ 78 (259) T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENG--YQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTITDEHREAI-KKLN 78 (259) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHCC T ss_conf 9999799868799999999999999869--989999789998999999999995699989993777775999999-9669 Q ss_pred CCEEEE Q ss_conf 203661 Q gi|254780157|r 83 LPVLGV 88 (165) Q Consensus 83 ~PVIgV 88 (165) .||+-+ T Consensus 79 iPvV~i 84 (259) T cd01542 79 VPVVVV 84 (259) T ss_pred CCEEEE T ss_conf 999995 No 240 >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo Probab=33.49 E-value=42 Score=15.63 Aligned_cols=107 Identities=25% Similarity=0.349 Sum_probs=55.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC---------------------CCE Q ss_conf 88749999588169899999999999809982654530103879999889876535---------------------982 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE---------------------GFK 61 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~---------------------~~~ 61 (165) .+-+-+++.|++. ++...++..|.+.|- ++.+.| |+.+++.+..+++..+ +.+ T Consensus 26 l~g~~~~V~G~tG--~vG~~~A~~lA~~Ga--~v~lv~--R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l~~ad 99 (194) T cd01078 26 LKGKTAVVLGGTG--PVGQRAAVLLAREGA--RVVLVG--RDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGAD 99 (194) T ss_pred CCCCEEEEECCCC--HHHHHHHHHHHHCCC--EEEEEE--CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC T ss_conf 6798899985885--789999999998399--799995--8788899999999997098731135788778997746698 Q ss_pred EEEEEECCCC-CCHHH-HHHHCCCC----EEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEC Q ss_conf 9999726766-85113-46522420----3661257766675001699840356986204431 Q gi|254780157|r 62 LIIAGAGGAA-HLPGM-IAAMTSLP----VLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAI 118 (165) Q Consensus 62 viIa~AG~aa-aLpgv-va~~t~~P----VIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~v 118 (165) ++++. |-++ .+..- ......+- |=+|||.+ ..|.|.-..-..++.+++.+-.++ T Consensus 100 iV~~a-~aAGv~~~~~~~~~~k~l~Vv~DVNAvPP~G--i~Gv~~~D~~~~i~G~~~~Gal~i 159 (194) T cd01078 100 VVFAA-GAAGVELLEKLAWAPKPLAVAADVNAVPPVG--IEGIDVPDKGVDREGKVPYGAIGV 159 (194) T ss_pred EEEEC-CHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCCCCCEECCCCEEECCCCC T ss_conf 99964-2777888788885088865998658999855--011033667345079725643112 No 241 >PRK08643 acetoin reductase; Validated Probab=33.43 E-value=42 Score=15.62 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=31.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHHH--CC Q ss_conf 49999588169899999999999809------------------------98265453010387999988987653--59 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNARF--EG 59 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~~--~~ 59 (165) ||++|.|+.+-+ ...+++.|.+.| -++.. +-.=-..++.+.++++...+ .+ T Consensus 3 KvalVTGg~~GI--G~aia~~la~~Ga~V~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~Dvt~~~~v~~~~~~~~~~~G~ 79 (256) T PRK08643 3 KVALVTGAGQGI--GFAIAKRLVEDGFKVAIVDYNEETAKAAADKLSSDGGKAIA-VKADVSNRDQVFDAVQQVVDTFGD 79 (256) T ss_pred CEEEEECCCCHH--HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE-EECCCCCHHHHHHHHHHHHHHHCC T ss_conf 499995757889--99999999987999999969889999999999853990999-980589999999999999998299 Q ss_pred CEEEEEEECCC Q ss_conf 82999972676 Q gi|254780157|r 60 FKLIIAGAGGA 70 (165) Q Consensus 60 ~~viIa~AG~a 70 (165) ++++|-.||.. T Consensus 80 iDiLVNnAG~~ 90 (256) T PRK08643 80 LNVVVNNAGLA 90 (256) T ss_pred CCEEEECCCCC T ss_conf 87999899889 No 242 >COG3002 Uncharacterized protein conserved in bacteria [Function unknown] Probab=33.19 E-value=43 Score=15.60 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=23.5 Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 67531228999999970699999999999999 Q gi|254780157|r 119 GQSGAINASLLAVAILALDDKELTDRLNEWRT 150 (165) Q Consensus 119 g~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~ 150 (165) |-+|++||-++|+- ++++++|++|++|-. T Consensus 590 GaSg~fNArvla~l---~N~peVRq~lke~GI 618 (880) T COG3002 590 GASGGFNARVLAAL---CNDPEVRQALKEYGI 618 (880) T ss_pred CCCCCCCHHHHHHH---HCCHHHHHHHHHCCC T ss_conf 74456159999999---489999988886186 No 243 >COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Probab=33.18 E-value=43 Score=15.60 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=65.4 Q ss_pred CEEEEEECCCCC--HHHHH-HHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC Q ss_conf 749999588169--89999-999999980998265453010387999988987653598299997267668511346522 Q gi|254780157|r 5 PPVAIIMGSQSD--WKIMK-YAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT 81 (165) Q Consensus 5 pkV~Ii~GS~SD--~~~~~-~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t 81 (165) .++++++...+| +..+. .+.+..+++|.........+...+..-.+.++++..++++.||....-+.++...+.-.. T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~a~~~~v~~a~ 113 (322) T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAK 113 (322) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 87999947788818999999999999864995589715788881999999999985599889992898075899999999 Q ss_pred CC--CEEEECCC Q ss_conf 42--03661257 Q gi|254780157|r 82 SL--PVLGVPII 91 (165) Q Consensus 82 ~~--PVIgVP~~ 91 (165) .- |||.+=.. T Consensus 114 ~aGIpVv~~d~~ 125 (322) T COG1879 114 AAGIPVVTVDSD 125 (322) T ss_pred HCCCEEEEECCC T ss_conf 779849996167 No 244 >cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding Probab=33.06 E-value=43 Score=15.58 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=51.8 Q ss_pred EEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH-HHHHCC Q ss_conf 999958816989---9999999999809982654530103879999889876535982999972676685113-465224 Q gi|254780157|r 7 VAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM-IAAMTS 82 (165) Q Consensus 7 V~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv-va~~t~ 82 (165) |+|+..+-+|-- +.+.+...+++.| |.+-+...+-.+++-.++++.+..++++-+|...+....-+-. -..... T Consensus 2 IGvivp~i~npf~~~~~~gie~~~~~~G--y~~~i~~t~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~l~~~~ 79 (266) T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAG--YSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAER 79 (266) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC T ss_conf 8999789868899999999999999879--98999979999799999999999659987999637877559999998559 Q ss_pred CCEEEE Q ss_conf 203661 Q gi|254780157|r 83 LPVLGV 88 (165) Q Consensus 83 ~PVIgV 88 (165) .||+-+ T Consensus 80 iPvV~~ 85 (266) T cd06282 80 VPYVLA 85 (266) T ss_pred CCEEEE T ss_conf 978999 No 245 >TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown.. Probab=32.95 E-value=43 Score=15.57 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=40.2 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEEEHH--CCHHHHHH---HHHH Q ss_conf 874999958816989999999999980998-265453010--38799998---8987 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGID-YEARIISAH--RTPDRLIE---FAKN 54 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~-~~~~V~SAH--R~p~~l~~---~~~~ 54 (165) .++|++-.=..=+-..++++-++|++.+|+ -..++.+.| |.|+.+.+ +.+. T Consensus 5 ~K~iAlTFDisWG~~~~~~IL~~L~~~~vk~ATFFlsG~Wae~hPelvk~lveI~~~ 61 (198) T TIGR02764 5 EKKIALTFDISWGNQYTEPILDTLKEEDVKNATFFLSGSWAERHPELVKELVEIVKD 61 (198) T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHC T ss_conf 851788415898744300676667655885333024315761277899999999844 No 246 >COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion] Probab=32.85 E-value=43 Score=15.56 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=44.7 Q ss_pred CCEEEEEECCCCCHH--HHHHHHHHHHHCCCCE-EEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH Q ss_conf 874999958816989--9999999999809982-6545301038799998898765359829999726766851 Q gi|254780157|r 4 APPVAIIMGSQSDWK--IMKYAADMLDTLGIDY-EARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP 74 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~--~~~~a~~~L~~~gI~~-~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp 74 (165) -+||.|+.|+.|=.. +.++....|+ |+.+ |..=.-+.-..+.+.+=++-+++++++.+.|+-|+|.--. T Consensus 29 ~~kVLi~YGGGSIKrnGvydqV~~~Lk--g~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGGGSViD~ 100 (384) T COG1979 29 DAKVLIVYGGGSIKKNGVYDQVVEALK--GIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDG 100 (384) T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH T ss_conf 572999956862000251999999854--866999448778954899999999999739639999568420011 No 247 >cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem Probab=32.84 E-value=43 Score=15.56 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=55.2 Q ss_pred EEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH-HHHHC Q ss_conf 49999588169---899999999999809982654530103879999889876535982999972676685113-46522 Q gi|254780157|r 6 PVAIIMGSQSD---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM-IAAMT 81 (165) Q Consensus 6 kV~Ii~GS~SD---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv-va~~t 81 (165) +|+++..+-+| ..+.+.+.+.+++.| |++.+......+++..++++.+..++++.+|...--.....-+ -.-.. T Consensus 1 tIgvi~p~~~~~f~~~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~~~~~~~~~~ 78 (264) T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAAG--YQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKA 78 (264) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC T ss_conf 98999788977999999999999999869--9899997999989999999999976999999967988868999999975 Q ss_pred CCCEEEE Q ss_conf 4203661 Q gi|254780157|r 82 SLPVLGV 88 (165) Q Consensus 82 ~~PVIgV 88 (165) ..||+-+ T Consensus 79 ~ipvV~~ 85 (264) T cd01537 79 GIPVVLV 85 (264) T ss_pred CCCEEEE T ss_conf 9979998 No 248 >PRK06198 short chain dehydrogenase; Provisional Probab=32.82 E-value=43 Score=15.56 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=26.5 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE Q ss_conf 88749999588169899999999999809982654530103879999889876535982 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~ 61 (165) ++-||++|.|+.+. +...+++.|-+.|... |+-.+|+.+.+.+..++.+..+.+ T Consensus 4 L~gK~alVTGas~G--IG~aiA~~la~~Ga~v---v~~~~~~~~~~~~~~~~~~~~g~~ 57 (268) T PRK06198 4 LDGKIALVTGGTQG--LGAAIARLFAERGAAG---LVICGRSAEKGEAKAAELEALGAK 57 (268) T ss_pred CCCCEEEEECCCCH--HHHHHHHHHHHCCCCE---EEEECCCHHHHHHHHHHHHHCCCC T ss_conf 89988999585778--9999999999879938---999629888999999999954996 No 249 >PRK06182 short chain dehydrogenase; Validated Probab=32.69 E-value=43 Score=15.55 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=39.4 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE-----------------EEEHHCCHHHHHHHHHHHHH--CCCEEE Q ss_conf 88749999588169899999999999809982654-----------------53010387999988987653--598299 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR-----------------IISAHRTPDRLIEFAKNARF--EGFKLI 63 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~-----------------V~SAHR~p~~l~~~~~~~~~--~~~~vi 63 (165) |+.||++|.|+.| -+...+++.|.+-|...-.. +..=-..++.+.+.++...+ ..++++ T Consensus 1 mk~Kv~lITGass--GIG~a~a~~la~~G~~V~~~~r~~~~l~~l~~~~~~~~~~Dvt~~~~v~~~~~~i~~~~g~iDiL 78 (273) T PRK06182 1 MKKKVALVTGASS--GIGKATARKLIAEGFTVYGAARRVDKMEDLASLGIHPLALDVTDEASMKAAVATILAEEGRIDVL 78 (273) T ss_pred CCCCEEEEECCCH--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEE T ss_conf 9469899906320--99999999999879989999798999999996799799985899999999999999983998877 Q ss_pred EEEECCCC Q ss_conf 99726766 Q gi|254780157|r 64 IAGAGGAA 71 (165) Q Consensus 64 Ia~AG~aa 71 (165) |--||... T Consensus 79 VNNAG~~~ 86 (273) T PRK06182 79 VNNAGYGS 86 (273) T ss_pred EECCCCCC T ss_conf 50586777 No 250 >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i Probab=32.63 E-value=43 Score=15.54 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=46.5 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEC Q ss_conf 95881698999999999998099826545301038799998898765359829999726766851134652242036612 Q gi|254780157|r 10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVP 89 (165) Q Consensus 10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP 89 (165) .+=|+++=|+..++...|++.||+|+..-.+- .++...++.+.. .+..+.|.|= T Consensus 3 ~iysk~~C~~C~~aK~lL~~~~i~y~ei~v~~--~~~~~~~~~~~~----------------------~~~~TvPqIf-- 56 (75) T cd03418 3 EIYTKPNCPYCVRAKALLDKKGVDYEEIDVDG--DPALREEMINRS----------------------GGRRTVPQIF-- 56 (75) T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHC----------------------CCCCEECEEE-- T ss_conf 99967999779999999998199868986279--999999999980----------------------8993539799-- Q ss_pred CCCCCCCCCCCHHHHHH Q ss_conf 57766675001699840 Q gi|254780157|r 90 IISQTLGGIDSLLSIVQ 106 (165) Q Consensus 90 ~~~~~~~G~dallS~vq 106 (165) +.+...+|.|-|..+-+ T Consensus 57 i~g~~IGG~~~l~~l~~ 73 (75) T cd03418 57 IGDVHIGGCDDLYALER 73 (75) T ss_pred ECCEEEECHHHHHHHHH T ss_conf 99979837899999985 No 251 >PRK07856 short chain dehydrogenase; Provisional Probab=32.52 E-value=44 Score=15.53 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=47.6 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE--------------EEEHHCCHHHHHHHHHHHHH--CCCEEEE Q ss_conf 9988749999588169899999999999809982654--------------53010387999988987653--5982999 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR--------------IISAHRTPDRLIEFAKNARF--EGFKLII 64 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~--------------V~SAHR~p~~l~~~~~~~~~--~~~~viI 64 (165) |+++-||++|.|+.+ -+...+++.|-+-|-...+. +..=-+.++.+.+..++..+ ..++++| T Consensus 4 ~~l~~K~alITGgs~--GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV 81 (254) T PRK07856 4 LDLTGRVVLVTGGTR--GVGAGISEAFLAAGATVVVCGRRAPEVDGRPAEFHACDIRDPDQVAALVDAIAERHGRLDVLV 81 (254) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 235999899947676--899999999998799999997985574898439998469999999999999999809988899 Q ss_pred EEECCC Q ss_conf 972676 Q gi|254780157|r 65 AGAGGA 70 (165) Q Consensus 65 a~AG~a 70 (165) ..||.. T Consensus 82 nNAG~~ 87 (254) T PRK07856 82 NNAGGS 87 (254) T ss_pred ECCCCC T ss_conf 889889 No 252 >PRK06196 oxidoreductase; Provisional Probab=32.41 E-value=44 Score=15.52 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=40.3 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHH-----------------------HHHHHHHHHH Q ss_conf 99887499995881698999999999998099826545301038799-----------------------9988987653 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDR-----------------------LIEFAKNARF 57 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~-----------------------l~~~~~~~~~ 57 (165) .|++-||+||.|++|- +..++++.|.+.|-. |+-+-|++++ +.+++++... T Consensus 22 ~dL~GK~~vITGa~sG--IG~~tA~~La~~Ga~----Vil~~R~~~k~~~a~~~i~~~~~~~lDLs~~~sVr~~a~~~~~ 95 (316) T PRK06196 22 LDLSGKTAIVTGGYSG--LGLETTRALAQAGAH----VVVPARRPDAAREALAGIDGVEVVALDLADLASVRAFAERFLD 95 (316) T ss_pred CCCCCCEEEECCCCCH--HHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH T ss_conf 7999998999179967--999999999978998----9999499999999998741785798368899999999999997 Q ss_pred --CCCEEEEEEECCC Q ss_conf --5982999972676 Q gi|254780157|r 58 --EGFKLIIAGAGGA 70 (165) Q Consensus 58 --~~~~viIa~AG~a 70 (165) ..++++|.-||.- T Consensus 96 ~~~~lDvLInNAGi~ 110 (316) T PRK06196 96 SGRRIDILINNAGVM 110 (316) T ss_pred HCCCCEEEEECCCCC T ss_conf 579832999578767 No 253 >COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion] Probab=32.29 E-value=40 Score=15.75 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=47.3 Q ss_pred CCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHHH-HC-CCCCCCEEEECCCCCC-HHHHHHHHHH Q ss_conf 598299997267668511346522420366125776667500-169984-03-5698620443167531-2289999999 Q gi|254780157|r 58 EGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGID-SLLSIV-QM-PAGVPVGTMAIGQSGA-INASLLAVAI 133 (165) Q Consensus 58 ~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~d-allS~v-qM-P~Gvpvatv~vg~~~~-~NAal~A~~I 133 (165) +.+++.+...|+-....+...-+++. -++ .|+. =++-++ +| +..||+..++||++|- .-|+++|-.. T Consensus 137 d~v~i~~~~KGGGSEn~s~l~~l~P~--------~~~-e~ik~fVletv~~~G~~~CPP~~vgiGIGgt~~~A~~LaKka 207 (297) T COG1951 137 DEVEILVAAKGGGSENKSALKMLTPS--------EGY-EGIKDFVLETVRTLGGNACPPYIVGIGIGGTAEKAALLAKKA 207 (297) T ss_pred CCEEEEEEECCCCCCCHHHHHEECCH--------HHH-HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHH T ss_conf 80899998458874354456401822--------125-579999999998549989997068888577599999999999 Q ss_pred HHCCC--HHHHHHHHHHHHHHH Q ss_conf 70699--999999999999999 Q gi|254780157|r 134 LALDD--KELTDRLNEWRTQQT 153 (165) Q Consensus 134 l~~~d--~~i~~kl~~~r~~~~ 153 (165) |.... .+.-++...++++.- T Consensus 208 l~r~i~~~~~~~~~~~~eeelL 229 (297) T COG1951 208 LLRPIDDRNPNEKNAKLEEELL 229 (297) T ss_pred HCCCCCCCCCCCCCHHHHHHHH T ss_conf 6074555699842005799999 No 254 >PRK08339 short chain dehydrogenase; Provisional Probab=32.21 E-value=44 Score=15.49 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=18.9 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC Q ss_conf 9988749999588169899999999999809 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLG 31 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g 31 (165) |+++-||++|.|+.+- +...+++.|-+.| T Consensus 4 l~L~gK~alITG~s~G--IG~aiA~~la~~G 32 (263) T PRK08339 4 IDLSGKLAFTTASSKG--IGFGVARVLARAG 32 (263) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCC T ss_conf 1789998999162609--9999999999869 No 255 >TIGR00875 talC transaldolase, putative; InterPro: IPR004731 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process. Probab=32.20 E-value=44 Score=15.49 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=31.3 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHH Q ss_conf 698999999999998099826545301038799998898 Q gi|254780157|r 15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAK 53 (165) Q Consensus 15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~ 53 (165) .=+...++..++++.|+++.++-++|. |+|.++.+-+. T Consensus 142 ~G~~li~e~~~i~~~h~~~t~vi~AS~-rhP~hvle~al 179 (216) T TIGR00875 142 DGLKLIEEVKTIFENHALDTEVIAASV-RHPRHVLEAAL 179 (216) T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHH T ss_conf 505789999999973087642665402-37178999997 No 256 >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. Probab=32.15 E-value=44 Score=15.49 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.2 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH Q ss_conf 995881698999999999998099826545301 Q gi|254780157|r 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISA 41 (165) Q Consensus 9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA 41 (165) |++=|++.=|...+|...|++.||+|+..-.+- T Consensus 3 V~Iysk~~CpyC~~AK~lL~~~gi~y~ei~l~~ 35 (72) T cd03029 3 VSLFTKPGCPFCARAKAALQENGISYEEIPLGK 35 (72) T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 999908999679999999998599659998887 No 257 >pfam00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain. Probab=31.82 E-value=45 Score=15.45 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=44.1 Q ss_pred CCCEEEEEE-CCCCCHH-HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH-CCCEEEE Q ss_conf 887499995-8816989-999999999980998265453010387999988987653-5982999 Q gi|254780157|r 3 IAPPVAIIM-GSQSDWK-IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF-EGFKLII 64 (165) Q Consensus 3 ~~pkV~Ii~-GS~SD~~-~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~-~~~~viI 64 (165) .+|+.++|. |.+.+-. +.+...+..+++||.++..-....-+.+++.+.++.... ..++=|+ T Consensus 28 ~~P~Laii~vg~~~~s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~~l~~~I~~lN~D~~V~GIl 92 (117) T pfam00763 28 VTPKLAVILVGDDPASQVYVRSKRKAAEELGIESELIRLPEDITEEELLALIEKLNADPSVHGIL 92 (117) T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE T ss_conf 99718999848975679999999999997287169987776334999999999996788788798 No 258 >pfam05681 Fumerase Fumarate hydratase (Fumerase). This family consists of several bacterial fumarate hydratase proteins FumA and FumB. Fumarase, or fumarate hydratase (EC 4.2.1.2), is a component of the citric acid cycle. In facultative anaerobes such as Escherichia coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre. Probab=31.79 E-value=45 Score=15.45 Aligned_cols=71 Identities=24% Similarity=0.357 Sum_probs=39.8 Q ss_pred CCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH--CCCCCCCEEEECCCCCCH-HHHHHHHHHH Q ss_conf 5982999972676685113465224203661257766675001699840--356986204431675312-2899999997 Q gi|254780157|r 58 EGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQ--MPAGVPVGTMAIGQSGAI-NASLLAVAIL 134 (165) Q Consensus 58 ~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vq--MP~Gvpvatv~vg~~~~~-NAal~A~~Il 134 (165) +.+++.+...|+-....+.+.-++ |+-+.-+=.+-++..+. =+.+||+.+++||++|-+ -|+++|-+-| T Consensus 127 d~~~i~~~~KGgGsEN~s~l~mL~--------P~~g~egi~~fVl~~V~~aG~~~CPP~ivGVGIGGt~~~a~~LaK~Al 198 (271) T pfam05681 127 DELEITVAAKGGGSENKSKLAMLN--------PSDGIEGIKKFVLETVKEAGPNACPPGVVGVGIGGTSEKAALLAKKAL 198 (271) T ss_pred CEEEEEEECCCCCCCCHHHHEEEC--------CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 869999954778743542422426--------555667899999999997177899987168886786999999999981 Q ss_pred HC Q ss_conf 06 Q gi|254780157|r 135 AL 136 (165) Q Consensus 135 ~~ 136 (165) -. T Consensus 199 ~r 200 (271) T pfam05681 199 LR 200 (271) T ss_pred HC T ss_conf 25 No 259 >PRK10886 DnaA initiator-associating protein DiaA; Provisional Probab=31.74 E-value=45 Score=15.45 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=28.6 Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC---------CCCEEEECCC Q ss_conf 88987653598299997267668511346522---------4203661257 Q gi|254780157|r 50 EFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT---------SLPVLGVPII 91 (165) Q Consensus 50 ~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t---------~~PVIgVP~~ 91 (165) +.+-..-.+|-++|+++.|+|++.+.-.++.. .+|+|..-.+ T Consensus 32 ~~i~~~l~~g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~lpai~L~~d 82 (196) T PRK10886 32 MTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTD 82 (196) T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC T ss_conf 999999987997999868474889999999996465568988405663267 No 260 >PRK06139 short chain dehydrogenase; Provisional Probab=31.56 E-value=45 Score=15.43 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=34.7 Q ss_pred CCCEEEEEECCCC----------------------CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--C Q ss_conf 8874999958816----------------------989999999999980998265453010387999988987653--5 Q gi|254780157|r 3 IAPPVAIIMGSQS----------------------DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--E 58 (165) Q Consensus 3 ~~pkV~Ii~GS~S----------------------D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~ 58 (165) ++-||++|.|..| |.+-.++..+.++++|.+.....+- -..++.+.+..++.++ . T Consensus 4 L~gKvvlITGASsGIG~aiA~~~A~~Ga~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~D-Vsd~~~v~~~~~~~~~~~G 82 (324) T PRK06139 4 LHGAVVVITGASSGIGRATAEAFARRGARLVLAARDEEALFEVAEECRALGAEVLVVPTD-VTHADQVQALATQAASFLG 82 (324) T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCC T ss_conf 599779993825499999999999879989999899999999999999549948999766-7885789999999999749 Q ss_pred CCEEEEEEECCC Q ss_conf 982999972676 Q gi|254780157|r 59 GFKLIIAGAGGA 70 (165) Q Consensus 59 ~~~viIa~AG~a 70 (165) .++++|-.||.. T Consensus 83 ~IDiLVNNAGi~ 94 (324) T PRK06139 83 RIDVWFNNVGVG 94 (324) T ss_pred CCCEEEECCCCC T ss_conf 987886457557 No 261 >COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism] Probab=31.49 E-value=45 Score=15.42 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=34.3 Q ss_pred EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC--CCEEEECCC Q ss_conf 2654530103879999889876535982999972676685113465224--203661257 Q gi|254780157|r 34 YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS--LPVLGVPII 91 (165) Q Consensus 34 ~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~--~PVIgVP~~ 91 (165) |.+.+.+|--....-..-++++..+|.+|+|-+|=-+..|..++..-+. .|||+.-.. T Consensus 56 ~k~~~q~A~~~~~~Q~~qien~i~qg~~vlvi~a~d~~~l~~~i~~A~~~gikViaYDRl 115 (341) T COG4213 56 AKVDVQSADGDEEKQLAQIENMINQGVKVLVIGAIDGGVLSNAVEKAKSEGIKVIAYDRL 115 (341) T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 323034322571679999999873599789998135325899999998759949974010 No 262 >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional Probab=31.32 E-value=46 Score=15.40 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=35.4 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEE-------------------------EEEEEHHCCHHHHHHHHHHHHHC-- Q ss_conf 499995881698999999999998099826-------------------------54530103879999889876535-- Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYE-------------------------ARIISAHRTPDRLIEFAKNARFE-- 58 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~-------------------------~~V~SAHR~p~~l~~~~~~~~~~-- 58 (165) ||++|.|+.+- +...+++.|.+-|...- ..+..=-+.++.+.++.+...++ T Consensus 3 KvalITG~s~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 80 (259) T PRK12384 3 KVAVVIGGGQT--LGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259) T ss_pred CEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC T ss_conf 78999468868--9999999999879999999798899999999998624886089998327999999999999999829 Q ss_pred CCEEEEEEECCC Q ss_conf 982999972676 Q gi|254780157|r 59 GFKLIIAGAGGA 70 (165) Q Consensus 59 ~~~viIa~AG~a 70 (165) .++++|..||.. T Consensus 81 ~iDilVnnAG~~ 92 (259) T PRK12384 81 RVDLLVYSAGIA 92 (259) T ss_pred CCCEEEECCCCC T ss_conf 971999899777 No 263 >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] Probab=31.30 E-value=46 Score=15.40 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=50.6 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEE Q ss_conf 99995881698999999999998099826545301038799998898765359829999726766851134652242036 Q gi|254780157|r 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVL 86 (165) Q Consensus 7 V~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVI 86 (165) |.++..-+.=+|-..|+...++.+|+|+.+-+----|-.....+...+.... |..+-....-|+ T Consensus 83 ILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~----------------gl~~E~~gg~v~ 146 (509) T COG0532 83 ILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY----------------GLVPEEWGGDVI 146 (509) T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC----------------CCCHHHCCCCEE T ss_conf 9999756785661799999998779998999854327998878999988777----------------988766188149 Q ss_pred EECCCCCCCCCCCCHHHHH Q ss_conf 6125776667500169984 Q gi|254780157|r 87 GVPIISQTLGGIDSLLSIV 105 (165) Q Consensus 87 gVP~~~~~~~G~dallS~v 105 (165) =||++.....|+|-||.++ T Consensus 147 ~VpvSA~tg~Gi~eLL~~i 165 (509) T COG0532 147 FVPVSAKTGEGIDELLELI 165 (509) T ss_pred EEEEECCCCCCHHHHHHHH T ss_conf 9974324787979999999 No 264 >PRK13761 hypothetical protein; Provisional Probab=31.03 E-value=46 Score=15.37 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=48.8 Q ss_pred HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH--------HHHCCCCEEEECC Q ss_conf 99999999998099826545301038799998898765359829999726766851134--------6522420366125 Q gi|254780157|r 19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI--------AAMTSLPVLGVPI 90 (165) Q Consensus 19 ~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv--------a~~t~~PVIgVP~ 90 (165) ..++..+.-+..+.+.|+.+ -|||++|+..+.+..+..|.+.+... .-.+-+||.= .|.-.--||=||. T Consensus 82 a~~e~v~La~~~~a~iEVNl--FyrT~eR~~~i~~~l~~~g~~~vLG~-~~d~~ipgL~~~R~~~~~~GI~~ADvVLVPL 158 (248) T PRK13761 82 VPDEIVELAKALGAKIEVNL--FYRTEERVEKIAEVLREHGAKEVLGT-DEDKRIPGLDHERGKVSEDGIYSADVVLVPL 158 (248) T ss_pred CHHHHHHHHHHHCCCEEEEE--CCCCHHHHHHHHHHHHHCCCEEEECC-CCCCEECCCCCCHHHCCCCCCEECCEEEEEC T ss_conf 66989999998099879995--24898999999999997699488668-9876108998841005704550023799844 Q ss_pred CCC Q ss_conf 776 Q gi|254780157|r 91 ISQ 93 (165) Q Consensus 91 ~~~ 93 (165) .-| T Consensus 159 EDG 161 (248) T PRK13761 159 EDG 161 (248) T ss_pred CCC T ss_conf 778 No 265 >PRK05866 short chain dehydrogenase; Provisional Probab=30.34 E-value=47 Score=15.29 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=33.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC------------------------CEEEEEEEHHCCHHHHHHHHHHHHH Q ss_conf 9887499995881698999999999998099------------------------8265453010387999988987653 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI------------------------DYEARIISAHRTPDRLIEFAKNARF 57 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI------------------------~~~~~V~SAHR~p~~l~~~~~~~~~ 57 (165) +.+=||++|.|+.| -+...++..|.+.|- +.....+ =-..++.+.++++...+ T Consensus 37 dL~GKvaLITGass--GIG~aiA~~la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~~~~~~~~-Dvtd~~~v~~~v~~~~~ 113 (290) T PRK05866 37 DLTGKRILLTGASS--GIGEAAAEKFARRGATVVAVARRKDLLDAVADRITAAGGDAMAIPC-DLSDLDAVDALVADVEE 113 (290) T ss_pred CCCCCEEEECCCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHHHHHH T ss_conf 89999899908130--9999999999986998999989999999999999964990899977-88989999999999999 Q ss_pred --CCCEEEEEEECCC Q ss_conf --5982999972676 Q gi|254780157|r 58 --EGFKLIIAGAGGA 70 (165) Q Consensus 58 --~~~~viIa~AG~a 70 (165) ..++++|--||.. T Consensus 114 ~~G~iDiLVNNAG~~ 128 (290) T PRK05866 114 RIGGVDILINNAGRS 128 (290) T ss_pred HHCCCCEEEECCCCC T ss_conf 859988899757666 No 266 >cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit. Probab=30.32 E-value=47 Score=15.29 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=47.2 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---HCCHHHH-HHHHHHHHHCCCEEEEEE----ECCCCCCHHHHH Q ss_conf 99995881698999999999998099826545301---0387999-988987653598299997----267668511346 Q gi|254780157|r 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---HRTPDRL-IEFAKNARFEGFKLIIAG----AGGAAHLPGMIA 78 (165) Q Consensus 7 V~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l-~~~~~~~~~~~~~viIa~----AG~aaaLpgvva 78 (165) +++-||..+.....+++. .+|.+--+++... -..|... ..+.+..+..++++++++ .|.++.+|+.+| T Consensus 56 tvlsvGp~~a~~~Lr~al----AmGaD~ai~i~d~~~~~~D~~~tA~~La~~i~~~~~DLIl~G~~s~D~~~g~v~~~lA 131 (202) T cd01714 56 TVVSMGPPQAEEALREAL----AMGADRAILVSDRAFAGADTLATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLA 131 (202) T ss_pred EEEEECCHHHHHHHHHHH----HHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHH T ss_conf 999937478899999999----7089835998065556669899999999999875998899954545799777999999 Q ss_pred HHCCCCEEEECCC Q ss_conf 5224203661257 Q gi|254780157|r 79 AMTSLPVLGVPII 91 (165) Q Consensus 79 ~~t~~PVIgVP~~ 91 (165) .+-.+|.+.-=.. T Consensus 132 ~~Lg~P~vt~v~~ 144 (202) T cd01714 132 ELLGWPQITYVSK 144 (202) T ss_pred HHHCCCCCCEEEE T ss_conf 9948972248889 No 267 >PRK05854 short chain dehydrogenase; Provisional Probab=30.14 E-value=48 Score=15.27 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=29.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHH Q ss_conf 988749999588169899999999999809982654530103879999889 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFA 52 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~ 52 (165) +++-||+||.|++| -+..+++..|.+-|- +|+-+-|++++..+-+ T Consensus 11 dL~GK~~vITGa~s--GIG~~~a~~La~~Ga----~Vil~~R~~~k~~~a~ 55 (314) T PRK05854 11 DLSGKLAVVTGASS--GLGFGLARRLAAAGA----DVILPVRNRAKGEAAV 55 (314) T ss_pred CCCCCEEEECCCCC--HHHHHHHHHHHHCCC----EEEEEECCHHHHHHHH T ss_conf 99999899906882--999999999997849----8999979999999999 No 268 >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional Probab=30.08 E-value=48 Score=15.27 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=26.3 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE Q ss_conf 9988749999588169899999999999809982 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDY 34 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~ 34 (165) |+++-|+++|.|..|-.-+...++..|.+.|-.. T Consensus 2 ~~L~gK~~lVTGaag~rGIG~aiA~~la~~Ga~V 35 (256) T PRK08594 2 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKL 35 (256) T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE T ss_conf 8999988999899999639999999999879999 No 269 >cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some Probab=30.01 E-value=48 Score=15.26 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=37.0 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 95881698999999999998099826545301038799998898765359829999 Q gi|254780157|r 10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIA 65 (165) Q Consensus 10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa 65 (165) .+|+..|-|-.++....++++.+=+...+.-..|+...+..+.+....+|+.++.. T Consensus 35 ~sg~~~~Rp~~~~ll~~~~~gd~lvv~~ldRl~R~~~~~~~~~~~l~~~gv~l~~~ 90 (126) T cd03768 35 GSGGKKERPELQKLLEDLREGDTLVVTKLDRLGRSTKDLLEIVEELREKGVSLRSL 90 (126) T ss_pred EECCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEC T ss_conf 56167788335677552236988999877824788999999999999779879975 No 270 >PRK08997 isocitrate dehydrogenase; Provisional Probab=29.91 E-value=48 Score=15.25 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=31.3 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 887499995881698999999999998099826545 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI 38 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V 38 (165) |+.||++|-|-----++++++.++|+.++.+++... T Consensus 1 M~~kI~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~ 36 (334) T PRK08997 1 MKRTITVIPGDGIGPSIIDSTLKILDKLGCDFEYEF 36 (334) T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 972599989784029999999999997098948999 No 271 >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=29.85 E-value=48 Score=15.24 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=36.7 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-------------------------CEEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 9887499995881698999999999998099-------------------------826545301038799998898765 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI-------------------------DYEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI-------------------------~~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) +++-||++|.|+.+ -+...+++.|-+.|. ++....+ =...++.+.++++... T Consensus 4 ~LkgK~~lITGas~--GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~~ 80 (250) T PRK12825 4 SLSGRVALVTGAAR--GIGRAIALRLAAAGADVIVHPPSDEAAAEETVAAVEALGRRAQAVQA-DVTDAAALEAAVEELV 80 (250) T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-ECCCHHHHHHHHHHHH T ss_conf 60978899938955--89999999999879989999798878999999999853994899994-1899999999999999 Q ss_pred H--CCCEEEEEEECCCC Q ss_conf 3--59829999726766 Q gi|254780157|r 57 F--EGFKLIIAGAGGAA 71 (165) Q Consensus 57 ~--~~~~viIa~AG~aa 71 (165) + ..++++|..||... T Consensus 81 ~~~g~iDilInnAg~~~ 97 (250) T PRK12825 81 ERFGAIDILVNNAGITG 97 (250) T ss_pred HHCCCCCEEEECCCCCC T ss_conf 97699989998998899 No 272 >TIGR02663 nifX nitrogen fixation protein NifX; InterPro: IPR013480 NifX is involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-Co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. This complex catalyses the reduction of atmospheric dinitrogen to ammonia. The role of NifX in cofactor biosynthesis is not fully understood, though it appears to be associated with mature FeMo-Co and may be involved in the addition of heterometal and/or homocitrate .; GO: 0051540 metal cluster binding, 0009399 nitrogen fixation, 0051188 cofactor biosynthetic process. Probab=29.67 E-value=49 Score=15.22 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=37.5 Q ss_pred CCCE-EEEEEECCCCCCHHHHHHHCCCCEEEECCCC-CCCCCCCCHHHHHH-CCCCCCC Q ss_conf 5982-9999726766851134652242036612577-66675001699840-3569862 Q gi|254780157|r 58 EGFK-LIIAGAGGAAHLPGMIAAMTSLPVLGVPIIS-QTLGGIDSLLSIVQ-MPAGVPV 113 (165) Q Consensus 58 ~~~~-viIa~AG~aaaLpgvva~~t~~PVIgVP~~~-~~~~G~dallS~vq-MP~Gvpv 113 (165) ++|. +|+.+=|+.+| +=||++... |+.. ....-+..++.-+| |..|+|+ T Consensus 67 k~C~ily~~AIGGpaA-AkvV~akiH------PiK~r~~pesI~~~l~~l~~mL~G~PP 118 (125) T TIGR02663 67 KDCAILYCLAIGGPAA-AKVVAAKIH------PIKVRNEPESISEVLEKLQKMLKGNPP 118 (125) T ss_pred CCCEEEEEEEECCHHH-HHHHHCCCC------CCCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 2770678872175357-898771888------301478872668899999987338867 No 273 >cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega Probab=29.65 E-value=49 Score=15.22 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=32.7 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHH Q ss_conf 999958816989999999999980998265453010387999988 Q gi|254780157|r 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEF 51 (165) Q Consensus 7 V~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~ 51 (165) ..=+.++ ..-|+.+++...|++-||+|+..-...++.|+.+.+. T Consensus 18 ~mkLY~~-~~cPfa~rVri~L~eKgi~~e~v~v~l~~kpe~~l~~ 61 (89) T cd03055 18 IIRLYSM-RFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEK 61 (89) T ss_pred EEEEECC-CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH T ss_conf 4899726-9991999999999983998789995786588788975 No 274 >PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=29.53 E-value=49 Score=15.21 Aligned_cols=89 Identities=22% Similarity=0.314 Sum_probs=47.7 Q ss_pred CCCCCEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHH------HHHHHHHH--HHCCCEEEEEEECCC Q ss_conf 998874999958816--98999999999998099826545301038799------99889876--535982999972676 Q gi|254780157|r 1 MNIAPPVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISAHRTPDR------LIEFAKNA--RFEGFKLIIAGAGGA 70 (165) Q Consensus 1 m~~~pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~------l~~~~~~~--~~~~~~viIa~AG~a 70 (165) |+.-.+|+|+.-..+ -...++++...|..-|+.+.+.--.++..... ..+..... ...+++++|+. |+. T Consensus 1 m~~~R~V~IV~k~~~~~a~~~a~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l-GGD 79 (303) T PRK03372 1 MTAERTVLLVAHTGRDEATESARRVVKQLGDAGIGVRVLAAEAADLPDDMRALGVEIEVVDADPDAADGCELVLVL-GGD 79 (303) T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCC T ss_conf 9988889999708998999999999999997889899970401002444555565422345322335785589997-787 Q ss_pred CCCHHHH--HHHCCCCEEEECC Q ss_conf 6851134--6522420366125 Q gi|254780157|r 71 AHLPGMI--AAMTSLPVLGVPI 90 (165) Q Consensus 71 aaLpgvv--a~~t~~PVIgVP~ 90 (165) +.+-.+. ......||+|+=. T Consensus 80 GT~L~aar~~~~~~iPilGiN~ 101 (303) T PRK03372 80 GTFLRAAELARNADVPVLGVNL 101 (303) T ss_pred HHHHHHHHHHCCCCCCEEEEEC T ss_conf 8999999984447998898725 No 275 >TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex. Probab=29.35 E-value=49 Score=15.19 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=33.5 Q ss_pred HCCHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHH-----HHHHCCCCEEEECCC Q ss_conf 038799998898765359829999726-76685113-----465224203661257 Q gi|254780157|r 42 HRTPDRLIEFAKNARFEGFKLIIAGAG-GAAHLPGM-----IAAMTSLPVLGVPII 91 (165) Q Consensus 42 HR~p~~l~~~~~~~~~~~~~viIa~AG-~aaaLpgv-----va~~t~~PVIgVP~~ 91 (165) .+|++...+-.+++...+.+.+|-+-| -||-=+-. +....+.+|||||-- T Consensus 151 I~T~Eq~~~al~~~k~l~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t~viGVPKT 206 (566) T TIGR02477 151 IETEEQFAKALETAKKLKLDGLVIIGGDDSNTNAALLAEYFAKKGLKTQVIGVPKT 206 (566) T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 56888999999998760896489974798679999999999973899227864025 No 276 >PRK06180 short chain dehydrogenase; Provisional Probab=28.99 E-value=50 Score=15.15 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=38.3 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE--------------------EEEHHCCHHHHHHHHHHHHH--CCCE Q ss_conf 8749999588169899999999999809982654--------------------53010387999988987653--5982 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR--------------------IISAHRTPDRLIEFAKNARF--EGFK 61 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~--------------------V~SAHR~p~~l~~~~~~~~~--~~~~ 61 (165) ++||.+|.|+.| -+...+++.|-+-|-..-.. +..=-..++.+.+.++...+ ..++ T Consensus 3 ~~KvvlITGass--GIG~aiA~~l~~~G~~Vi~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iD 80 (277) T PRK06180 3 SMKTWLITGVSS--GFGRALAQAALAAGHRVVGTVRSAAARRDFEALHPGRALARVLDVTDFDAIDGVVADAEATVGPID 80 (277) T ss_pred CCCEEEECCCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC T ss_conf 998899917873--999999999998799999998999999999986799579999837999999999999999819986 Q ss_pred EEEEEECCC Q ss_conf 999972676 Q gi|254780157|r 62 LIIAGAGGA 70 (165) Q Consensus 62 viIa~AG~a 70 (165) ++|--||.. T Consensus 81 vLVNNAG~~ 89 (277) T PRK06180 81 VLVNNAGYG 89 (277) T ss_pred EEEECCCCC T ss_conf 999899778 No 277 >PRK05993 short chain dehydrogenase; Provisional Probab=28.93 E-value=50 Score=15.14 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=38.9 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE-----------------EEHHCCHHHHHHHHHHHHH---CCC Q ss_conf 99887499995881698999999999998099826545-----------------3010387999988987653---598 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI-----------------ISAHRTPDRLIEFAKNARF---EGF 60 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V-----------------~SAHR~p~~l~~~~~~~~~---~~~ 60 (165) |+|+ |+++|.|..| -+....++.|.+-|...-... .---..++.+.+.++...+ ... T Consensus 1 M~m~-K~vlITGass--GIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~~g~i 77 (277) T PRK05993 1 MDMK-RSILITGCSS--GIGAYCAHALQKRGWRVFATCRKPEDIAALEAEGLEAFYLDYAEPESIAALVAQVLELSGGKL 77 (277) T ss_pred CCCC-CEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE T ss_conf 9998-6899925686--999999999998799999997999999999848981999726677999999999999808970 Q ss_pred EEEEEEECCCC Q ss_conf 29999726766 Q gi|254780157|r 61 KLIIAGAGGAA 71 (165) Q Consensus 61 ~viIa~AG~aa 71 (165) +++|-.||... T Consensus 78 d~lvNnAg~~~ 88 (277) T PRK05993 78 DALFNNGAYGQ 88 (277) T ss_pred EEEEECCCCCC T ss_conf 69996664356 No 278 >PRK06179 short chain dehydrogenase; Provisional Probab=28.54 E-value=51 Score=15.10 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=43.4 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE---------------EEEHHCCHHHHHHHHHHHHH--CCCEEE Q ss_conf 9988749999588169899999999999809982654---------------53010387999988987653--598299 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR---------------IISAHRTPDRLIEFAKNARF--EGFKLI 63 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~---------------V~SAHR~p~~l~~~~~~~~~--~~~~vi 63 (165) |+ +.||++|.|+.| -+...+++.|.+-|...-.. +..=-..++.+.+.+++..+ ..++++ T Consensus 1 M~-~~KvalITGass--GIG~a~A~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~iDiL 77 (270) T PRK06179 1 MS-NKKVALVTGASS--GIGRATAEALARAGYRVFGTSRNPARATPIPGVELLELDVTDDASVQAAVQEVIARAGRIDVL 77 (270) T ss_pred CC-CCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEE T ss_conf 98-995899907246--999999999998799999996897773054897899910799999999999999983998889 Q ss_pred EEEECCC Q ss_conf 9972676 Q gi|254780157|r 64 IAGAGGA 70 (165) Q Consensus 64 Ia~AG~a 70 (165) |.-||.. T Consensus 78 VNNAGi~ 84 (270) T PRK06179 78 VNNAGVG 84 (270) T ss_pred EECCCCC T ss_conf 9898666 No 279 >pfam00106 adh_short short chain dehydrogenase. This family contains a wide variety of dehydrogenases. Probab=28.46 E-value=51 Score=15.09 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=45.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCCC Q ss_conf 4999958816989999999999980998265453010387999988987653--59829999726766 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGAA 71 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~aa 71 (165) +|.++.+...+.+..++....++..|....... .--..++.+.+.+++... ..++++|-.||... T Consensus 26 ~~vv~~~r~~~~~~~~~~~~~~~~~g~~~~~~~-~Dv~~~~~v~~~~~~~~~~~g~iD~linnAG~~~ 92 (167) T pfam00106 26 RHLVLVSRRGDAPGAAELVAELEALGAEVTVAA-CDVADRDALAALLAALPAALGPLDGVVHNAGVLD 92 (167) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 489996599676899999999995598599998-4699999999999999997599739998871268 No 280 >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which Probab=28.32 E-value=51 Score=15.07 Aligned_cols=69 Identities=23% Similarity=0.333 Sum_probs=42.8 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEC Q ss_conf 95881698999999999998099826545301038799998898765359829999726766851134652242036612 Q gi|254780157|r 10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVP 89 (165) Q Consensus 10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP 89 (165) ++=|++.=|...++...|+..||+|+..-.+.+. +...++.+.. +..+.|.|=+ T Consensus 3 ~iYs~~~C~~C~~ak~~L~~~~i~y~e~di~~~~--~~~~~l~~~~-----------------------g~~tvPqIfi- 56 (72) T cd02066 3 VVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG--ELREELKELS-----------------------GWPTVPQIFI- 56 (72) T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCH--HHHHHHHHHH-----------------------CCCCCCEEEE- T ss_conf 9997799976999999999569977899805988--8999999984-----------------------9988995999- Q ss_pred CCCCCCCCCCCHHHHH Q ss_conf 5776667500169984 Q gi|254780157|r 90 IISQTLGGIDSLLSIV 105 (165) Q Consensus 90 ~~~~~~~G~dallS~v 105 (165) .+...+|.|-|..+. T Consensus 57 -~g~~IGG~~~l~~l~ 71 (72) T cd02066 57 -NGEFIGGYDDLKALH 71 (72) T ss_pred -CCEEECCHHHHHHHC T ss_conf -998981689999860 No 281 >PRK07062 short chain dehydrogenase; Provisional Probab=28.15 E-value=52 Score=15.05 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=39.1 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE------------------------E-EEEHHCCHHHHHHHHHHH Q ss_conf 998874999958816989999999999980998265------------------------4-530103879999889876 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA------------------------R-IISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~------------------------~-V~SAHR~p~~l~~~~~~~ 55 (165) |+++-||++|.|+.+ -+...+++.|-+.|....+ . +..=-+.++.+.++++.. T Consensus 4 ~~L~gK~alITG~s~--GIG~a~a~~la~~Ga~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~ 81 (265) T PRK07062 4 IQLEGRVAVVTGGSS--GIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH T ss_conf 788999899957577--999999999998799999997988999999999987369965999975799999999999999 Q ss_pred HHC--CCEEEEEEECCC Q ss_conf 535--982999972676 Q gi|254780157|r 56 RFE--GFKLIIAGAGGA 70 (165) Q Consensus 56 ~~~--~~~viIa~AG~a 70 (165) .++ +++++|-.||.. T Consensus 82 ~~~~G~iDiLVnNAg~~ 98 (265) T PRK07062 82 EARFGGVDMLVNNAGQG 98 (265) T ss_pred HHHHCCCCEEEECCCCC T ss_conf 99839988899778888 No 282 >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated Probab=28.10 E-value=52 Score=15.05 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=44.0 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------E-EEEHHCCHHHHHHHHHHHHH--CCCEEE Q ss_conf 998874999958816989999999999980998265--------------4-53010387999988987653--598299 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA--------------R-IISAHRTPDRLIEFAKNARF--EGFKLI 63 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~--------------~-V~SAHR~p~~l~~~~~~~~~--~~~~vi 63 (165) |+.+-|+++|.|+.| -+...+++.|.+-|..... . +..=-..++.+.+++++... ..++++ T Consensus 4 ~~l~gK~alITG~s~--GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 81 (253) T PRK08220 4 MDFSGKTVWVTGAAQ--GIGYAVALAFVEAGAKVIGFDQAFEQLNEQYPFATFVLDVADAAAVAQVCQRLLAETGPLDVL 81 (253) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEE T ss_conf 899999899958856--899999999998799999997887787489977999973799999999999999973998889 Q ss_pred EEEECCC Q ss_conf 9972676 Q gi|254780157|r 64 IAGAGGA 70 (165) Q Consensus 64 Ia~AG~a 70 (165) |-.||.. T Consensus 82 VnnAG~~ 88 (253) T PRK08220 82 VNVAGVL 88 (253) T ss_pred EECCCCC T ss_conf 9899878 No 283 >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] Probab=27.74 E-value=52 Score=15.01 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEE---EEEHHCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 899999999999809982654---530103879999889876535982999 Q gi|254780157|r 17 WKIMKYAADMLDTLGIDYEAR---IISAHRTPDRLIEFAKNARFEGFKLII 64 (165) Q Consensus 17 ~~~~~~a~~~L~~~gI~~~~~---V~SAHR~p~~l~~~~~~~~~~~~~viI 64 (165) +-+.+++..+|++|||+|+.. +.-+| .++...+.+..+-+-+.++|- T Consensus 79 iVv~~~a~~iL~e~gI~ye~~e~g~~v~d-s~e~~skl~~~a~~aGaki~n 128 (262) T COG1635 79 IVVREEADEILDEFGIRYEEEEDGYYVAD-SAEFASKLAARALDAGAKIFN 128 (262) T ss_pred EEECCHHHHHHHHHCCCCEECCCCEEEEC-HHHHHHHHHHHHHHCCCEEEE T ss_conf 44425389999981985244579669832-799999999998730810242 No 284 >TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome. Probab=27.72 E-value=36 Score=16.07 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.1 Q ss_pred EEEEEEEHH-CCHHHH--HHHHHHHHHCCCEEEEEE Q ss_conf 265453010-387999--988987653598299997 Q gi|254780157|r 34 YEARIISAH-RTPDRL--IEFAKNARFEGFKLIIAG 66 (165) Q Consensus 34 ~~~~V~SAH-R~p~~l--~~~~~~~~~~~~~viIa~ 66 (165) .|-.|-++| ||+-.. ++|+....++|+ ||||- T Consensus 512 TDADVDGSHIRTLLLTFFYR~M~~LIE~Gy-vYIAq 546 (818) T TIGR01059 512 TDADVDGSHIRTLLLTFFYRYMRPLIENGY-VYIAQ 546 (818) T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-EEEEC T ss_conf 067878368999999988740158874587-26507 No 285 >cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and Probab=27.69 E-value=53 Score=15.00 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=43.0 Q ss_pred CEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 74999958816--9899999999999809982654530103879999889876535982999972676685113465224 Q gi|254780157|r 5 PPVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 5 pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) .|+.+.+||-- -.-++++..+.|++.||++++.-++.. ++... .++++++|..+-... ... T Consensus 1 KkIlVaCGsGiaTSt~v~~ki~~~l~e~gi~~~i~~~~i~-------e~~~~--~~~~Dliv~tt~~~~--------~~~ 63 (89) T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIA-------EVPSL--LDDADLIVSTTKVPE--------DYG 63 (89) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHH-------HHHHC--CCCCCEEEEECCCCC--------CCC T ss_conf 9499998997039999999999999986991599997599-------98742--799878999442688--------889 Q ss_pred CCEEEEC Q ss_conf 2036612 Q gi|254780157|r 83 LPVLGVP 89 (165) Q Consensus 83 ~PVIgVP 89 (165) .|||..- T Consensus 64 iPvi~g~ 70 (89) T cd05566 64 IPVINGL 70 (89) T ss_pred CCEEEEE T ss_conf 8789963 No 286 >cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA. Probab=27.69 E-value=53 Score=15.00 Aligned_cols=107 Identities=19% Similarity=0.294 Sum_probs=71.4 Q ss_pred HHHHHCCCCEE-------EEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 99998099826-------54530103879999889876535982999972676685113465224203661257766675 Q gi|254780157|r 25 DMLDTLGIDYE-------ARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGG 97 (165) Q Consensus 25 ~~L~~~gI~~~-------~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G 97 (165) .+++++||+.. --|.++-.+++...+++++++.++.-+|.++- ++.-+.. .+.--| T Consensus 113 ~iiR~lGV~lVdG~iPG~AvIvG~apd~e~a~~iv~elQ~k~il~fl~g~--------iieQl~e---------~gvk~G 175 (287) T cd01917 113 PIVRGLGIKMVDWTIPGEAVILGRAKDSKALKKIVDDLMGRGFMLFLCDE--------IVEQLLE---------ENVKLG 175 (287) T ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEHHH--------HHHHHHH---------HCHHCC T ss_conf 88997498520587771468851799848999999999866844522433--------9999998---------170027 Q ss_pred CCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 001699840356986204431675312289999999706999999999999999999998 Q gi|254780157|r 98 IDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISIS 157 (165) Q Consensus 98 ~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v~ 157 (165) +|-.+ .|-| -+ |-+| -+.|-|+-|+-|++---|--++++.+|..+.....- T Consensus 176 ~d~rl----vP~G-~i-Ts~i---ha~~~A~Raal~FGgv~PGd~~~~l~Y~~~Rv~AFV 226 (287) T cd01917 176 LDYIA----YPLG-NF-TQAI---HAANYALRAGLMFGGIEPGKREEIRDYQRRRVRAFV 226 (287) T ss_pred CCEEE----EECC-CC-EEEH---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 72589----7247-61-1102---465799998888569896656899999997778898 No 287 >PRK07677 short chain dehydrogenase; Provisional Probab=27.66 E-value=53 Score=15.00 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=30.8 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC Q ss_conf 989999999999980998265453010387999988987653--5982999972676 Q gi|254780157|r 16 DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA 70 (165) Q Consensus 16 D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a 70 (165) |....+++.+.++++|-......+ =-+.++.+.+++++..+ ..++++|..||.. T Consensus 36 ~~~~l~~~~~~i~~~g~~~~~~~~-Dv~~~~~v~~~v~~~~~~~g~iDiLVnNAg~~ 91 (254) T PRK07677 36 TKEKLEEAKLEIEQFPGQVLTVQM-DVRNPDDVQKMIEQIDEKFGRIDALINNAAGN 91 (254) T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 999999999999856990999980-38999999999999999839988899757557 No 288 >cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI Probab=27.48 E-value=53 Score=14.98 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=34.4 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHH Q ss_conf 698999999999998099826545301038799998898 Q gi|254780157|r 15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAK 53 (165) Q Consensus 15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~ 53 (165) -|-|+.+.+..+|..-||+|++.-+-..|-|+.+.++.- T Consensus 20 G~CPF~QR~~mvL~~Kgv~f~vt~VDl~~kPe~f~~~~p 58 (91) T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAP 58 (91) T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCC T ss_conf 577778999999997499745898554669299996598 No 289 >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions. Probab=27.24 E-value=54 Score=14.95 Aligned_cols=15 Identities=27% Similarity=0.063 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780157|r 142 TDRLNEWRTQQTISI 156 (165) Q Consensus 142 ~~kl~~~r~~~~~~v 156 (165) |+.|..-..+..+++ T Consensus 176 fd~l~~i~~~l~~~v 190 (192) T cd01473 176 WNNLNGISKFLTDKI 190 (192) T ss_pred HHHHHHHHHHHHHHH T ss_conf 789999999999972 No 290 >cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions. Probab=27.19 E-value=54 Score=14.94 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=26.3 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEEE----EHHCCHHHH Q ss_conf 958816989999999999980998265453----010387999 Q gi|254780157|r 10 IMGSQSDWKIMKYAADMLDTLGIDYEARII----SAHRTPDRL 48 (165) Q Consensus 10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~----SAHR~p~~l 48 (165) +.|. ..-+-..+...+|++.|++|+..-. +-||+|+.+ T Consensus 3 lYg~-~~S~~~rkV~~~l~e~gl~ye~~~v~~~~g~~~~p~f~ 44 (73) T cd03047 3 IWGR-RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFL 44 (73) T ss_pred EECC-CCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHH T ss_conf 9558-99902999999999859998899807877876897899 No 291 >cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. Probab=27.15 E-value=54 Score=14.94 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=55.7 Q ss_pred EEEEECCCCCHHHHHHHH----HHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC--CCEEEEEEECCCCCCHHHHHH- Q ss_conf 999958816989999999----9999809982654530103879999889876535--982999972676685113465- Q gi|254780157|r 7 VAIIMGSQSDWKIMKYAA----DMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE--GFKLIIAGAGGAAHLPGMIAA- 79 (165) Q Consensus 7 V~Ii~GS~SD~~~~~~a~----~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~--~~~viIa~AG~aaaLpgvva~- 79 (165) |+.+..++||-|+..... ...+++|+ ++.+..+...+++..+.++++..+ +++.+|... .+...+.++.. T Consensus 2 ~~~~~~g~~~nPF~~~~~~g~~~aA~~~Gv--~l~v~~~~~d~~~q~~~ie~~I~~~~~vd~Iii~p-~~~~~~~~l~~A 78 (305) T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDLGI--ELEVLYAERDRFLMLQQARTILQRPDKPDALIFTN-EKSVAPELLRLA 78 (305) T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHH T ss_conf 699089988896999999999999997299--89997399999999999999983637970999879-620018999999 Q ss_pred -HCCCCEEEECC Q ss_conf -22420366125 Q gi|254780157|r 80 -MTSLPVLGVPI 90 (165) Q Consensus 80 -~t~~PVIgVP~ 90 (165) .--.|||.+=. T Consensus 79 ~~agIPVv~~d~ 90 (305) T cd06324 79 EGAGVKLFLVNS 90 (305) T ss_pred HHCCCEEEEECC T ss_conf 976983999658 No 292 >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated Probab=27.00 E-value=54 Score=14.92 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=38.0 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC-------------------------EEEEEEEHHCCHHHHHHHHHHH Q ss_conf 998874999958816989999999999980998-------------------------2654530103879999889876 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID-------------------------YEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~-------------------------~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |+++-||++|.|+.|- +...+++.|-+.|.. +....+ =-..++.+.++.+.. T Consensus 1 ~~L~gK~~lITGgs~G--IG~aia~~la~~G~~Vii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dlt~~~~v~~~~~~~ 77 (248) T PRK05557 1 MSLEGKVALVTGASRG--IGRAIAERLAAQGANVVLNYASSEAGAEALVAEIGALGGKALAVQG-DVADAESIERAVDEA 77 (248) T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHH T ss_conf 9679988999489768--9999999999879989999698565899999999963995899990-389999999999999 Q ss_pred HH--CCCEEEEEEECCC Q ss_conf 53--5982999972676 Q gi|254780157|r 56 RF--EGFKLIIAGAGGA 70 (165) Q Consensus 56 ~~--~~~~viIa~AG~a 70 (165) .+ ..++++|..||.. T Consensus 78 ~~~~g~iD~linnAg~~ 94 (248) T PRK05557 78 KAEFGGVDILVNNAGIT 94 (248) T ss_pred HHHCCCCCEEEECCCCC T ss_conf 99829971999899779 No 293 >cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. Probab=26.58 E-value=55 Score=14.88 Aligned_cols=137 Identities=19% Similarity=0.163 Sum_probs=72.9 Q ss_pred CCCHHHHHHHHHHHHHCCCC-----EEEEEEEHH-----CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC Q ss_conf 16989999999999980998-----265453010-----38799998898765359829999726766851134652242 Q gi|254780157|r 14 QSDWKIMKYAADMLDTLGID-----YEARIISAH-----RTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL 83 (165) Q Consensus 14 ~SD~~~~~~a~~~L~~~gI~-----~~~~V~SAH-----R~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~ 83 (165) .......+.....+...+-. --+.+--.| -+++++.++.+.+.+.|..+.+=+|=..+++.. . T Consensus 104 ~~g~l~~~~i~~~i~~~~~~h~~~~~lv~ient~e~G~v~~~~el~~i~~~a~~~gl~lH~DGARl~nA~~a---~---- 176 (338) T cd06502 104 ENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAA---L---- 176 (338) T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHHHHHCCCEEEECCCCEECEEEC---C---- T ss_conf 999738999999631568864665207998731289631279999999999997497266536530044541---5---- Q ss_pred CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCC---------------CHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 036612577666750016998403569862044316753---------------12289999999706999999999999 Q gi|254780157|r 84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSG---------------AINASLLAVAILALDDKELTDRLNEW 148 (165) Q Consensus 84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~---------------~~NAal~A~~Il~~~d~~i~~kl~~~ 148 (165) ||+.. .+..+.|++.=...=--|.|++.+.++... -.-.+++|+|.+..-++++|.+.... T Consensus 177 ---g~~~~-~~~~~~Dsvs~~~sKglgap~gavl~g~~~~i~~a~~~rK~~Gg~mrq~g~lAAa~~~~L~~~~~~~~l~~ 252 (338) T cd06502 177 ---GVALK-TYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRH 252 (338) T ss_pred ---CCCHH-HHHHHCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf ---99989-98641878999665667774324787788999999999986475364599999999999854837899999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999984054 Q gi|254780157|r 149 RTQQTISISEYPK 161 (165) Q Consensus 149 r~~~~~~v~~~~~ 161 (165) -.++.+.+.+.-+ T Consensus 253 dh~~A~~La~~l~ 265 (338) T cd06502 253 DHEMARRLAEALE 265 (338) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999998 No 294 >pfam04743 consensus Probab=26.58 E-value=29 Score=16.66 Aligned_cols=43 Identities=26% Similarity=0.500 Sum_probs=31.5 Q ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 403569862044316753122899999997069999999999999 Q gi|254780157|r 105 VQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWR 149 (165) Q Consensus 105 vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r 149 (165) +.+||||-++-..-+.+ -.+++.-+-.|++.-.+|-+-|+.|- T Consensus 37 lglPPGV~vGDllq~~~--~~~~L~Q~yLLAvQsN~ITdyL~RFd 79 (160) T pfam04743 37 LGLPPGVSVGDLLQSEQ--STETLRQAYLLAVQSNNITDYLKRFD 79 (160) T ss_pred CCCCCCCCHHHHHHCCC--HHHHHHHHHHHHHHHCCHHHHHHHCC T ss_conf 37999864899887031--08999999999998521999998554 No 295 >COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair] Probab=26.57 E-value=49 Score=15.22 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=19.4 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999997069999999999999 Q gi|254780157|r 127 SLLAVAILALDDKELTDRLNEWR 149 (165) Q Consensus 127 al~A~~Il~~~d~~i~~kl~~~r 149 (165) --.|+.+||++-.-+|+||++|- T Consensus 74 QtrAa~mLGinR~TLRKKLkqyg 96 (98) T COG2901 74 QTRAALMLGINRGTLRKKLKKYG 96 (98) T ss_pred HHHHHHHHCCCHHHHHHHHHHHC T ss_conf 88999997432889999999826 No 296 >pfam00365 PFK Phosphofructokinase. Probab=26.56 E-value=55 Score=14.87 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=30.7 Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH--HHHHCCCCEEEECCC Q ss_conf 3879999889876535982999972676685113--465224203661257 Q gi|254780157|r 43 RTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM--IAAMTSLPVLGVPII 91 (165) Q Consensus 43 R~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv--va~~t~~PVIgVP~~ 91 (165) +.++...+..++.+..+++.+|.+-|-.. +-++ ++..-..||||+|-. T Consensus 76 ~~~~~~~~~~~~l~~~~Id~li~IGGd~S-~~~a~~L~~~~~i~vigIPkT 125 (279) T pfam00365 76 REREGRLKAAENLKKHGIDALVVIGGDGS-YTGADLLTSEHGFNCVGLPGT 125 (279) T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHHHHHHHCCCCEEEEECC T ss_conf 45667999999999848997999669568-999999999729978982034 No 297 >KOG3984 consensus Probab=26.54 E-value=37 Score=16.03 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=16.3 Q ss_pred CCCEEEEEECCC-CCHHHHHHHHHHHHHCCCC Q ss_conf 887499995881-6989999999999980998 Q gi|254780157|r 3 IAPPVAIIMGSQ-SDWKIMKYAADMLDTLGID 33 (165) Q Consensus 3 ~~pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~ 33 (165) ++||++||+||- +++.-.-....++..-.|| T Consensus 23 ~rpk~gIICGSgLg~l~~~l~~p~i~pYedIP 54 (286) T KOG3984 23 IRPKVGIICGSGLGGLADKLSQPVIVPYEDIP 54 (286) T ss_pred CCCCEEEEECCCCCHHHHHCCCCEEECHHHCC T ss_conf 68856899457752166640577784475378 No 298 >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. Probab=26.47 E-value=55 Score=14.86 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=50.3 Q ss_pred EEEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 999958--816989999999999980998265453010387999988987653598299997267 Q gi|254780157|r 7 VAIIMG--SQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG 69 (165) Q Consensus 7 V~Ii~G--S~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~ 69 (165) |.|-.| +..-.....-+..++++.|++...+...-.|+...+...+..+...|++=+.+..|= T Consensus 32 isVT~gaggs~~~~t~~~a~~i~~~~gi~~i~Hltcr~~n~~~l~~~L~~~~~~Gi~niLaLrGD 96 (274) T cd00537 32 VSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGD 96 (274) T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 99388989856240999999999973998226860178999999999999998598638873588 No 299 >PRK06114 short chain dehydrogenase; Provisional Probab=26.23 E-value=56 Score=14.83 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=37.0 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH-------------------------HHCCCCEEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 98874999958816989999999999-------------------------98099826545301038799998898765 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADML-------------------------DTLGIDYEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L-------------------------~~~gI~~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) +.+-||++|.|+.|- +...+++.| +.+|-.... +..=-+.++.+.+.++... T Consensus 13 ~L~gKvalVTGa~~G--IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~-~~~Dvt~~~~v~~~v~~~~ 89 (262) T PRK06114 13 DLDGQVAFVTGAGSG--IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQ-IAADVTSKSDLAAAVARTE 89 (262) T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHH T ss_conf 989998999684789--9999999999879989999589746999999999965995899-9816899999999999999 Q ss_pred H--CCCEEEEEEECCCCC Q ss_conf 3--598299997267668 Q gi|254780157|r 57 F--EGFKLIIAGAGGAAH 72 (165) Q Consensus 57 ~--~~~~viIa~AG~aaa 72 (165) + ..++++|-.||.... T Consensus 90 ~~~G~iDiLVNnAGi~~~ 107 (262) T PRK06114 90 AELGALTLAVNAAGIANA 107 (262) T ss_pred HHCCCCCEEEECCCCCCC T ss_conf 981999899989989999 No 300 >TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process. Probab=26.22 E-value=34 Score=16.21 Aligned_cols=15 Identities=53% Similarity=0.879 Sum_probs=7.6 Q ss_pred HHHHHHHHHCCCCEE Q ss_conf 999999998099826 Q gi|254780157|r 21 KYAADMLDTLGIDYE 35 (165) Q Consensus 21 ~~a~~~L~~~gI~~~ 35 (165) +++.++|++|||+|+ T Consensus 76 ~pA~~~L~e~gI~~~ 90 (283) T TIGR00292 76 KPAKEILDEFGIRYE 90 (283) T ss_pred CHHHHHHHHCCCCEE T ss_conf 404688886598133 No 301 >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Probab=26.20 E-value=56 Score=14.83 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=37.5 Q ss_pred HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH Q ss_conf 999999998099826545301038799998898765359829999726766851 Q gi|254780157|r 21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP 74 (165) Q Consensus 21 ~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp 74 (165) +++.+..++||+++-+.--..-+..+|+.+.++....++.+++|-+-|=+--+. T Consensus 53 ~~I~~~~~~~g~~~imTs~~h~~GTdRi~Ea~~~l~~~~~d~IInvQGDEPli~ 106 (248) T PRK05450 53 ERIADAVEAFGGEVVMTSADHPSGTDRIAEAAAKLGLSDDDIVVNVQGDEPLIP 106 (248) T ss_pred HHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCC T ss_conf 524435315686234046454770389999998508777868999359867789 No 302 >pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain. Probab=26.10 E-value=56 Score=14.82 Aligned_cols=99 Identities=20% Similarity=0.289 Sum_probs=52.0 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCE Q ss_conf 49999588169899999999999809982654530103879999889876535982999972676685113465224203 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPV 85 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PV 85 (165) |-+++.|. |.. +.++.+..|.+-+ ..|...|+....+.++.++ .|++|+++|..+-+.+-.--- --=| T Consensus 37 k~vvViGr-S~i-VG~Pla~lL~~~~----atVtichs~T~nl~~~~~~-----ADIvI~A~G~p~~i~~~~ik~-gavv 104 (159) T pfam02882 37 KNVVVIGR-SNI-VGKPLALLLLNAN----ATVTVCHSKTKDLAEITRE-----ADIVVVAVGKPGLIKADWVKP-GAVV 104 (159) T ss_pred CEEEEECC-CCH-HHHHHHHHHHHCC----CEEEEECCCCCCHHHHHHC-----CCEEEEECCCCCCCCHHHCCC-CCEE T ss_conf 66999888-731-4899999998779----9899981899997896300-----344423158855056988589-9889 Q ss_pred EEECCC---CCCC-CCCC--CHHHHHH----CCCCCCCEEE Q ss_conf 661257---7666-7500--1699840----3569862044 Q gi|254780157|r 86 LGVPII---SQTL-GGID--SLLSIVQ----MPAGVPVGTM 116 (165) Q Consensus 86 IgVP~~---~~~~-~G~d--allS~vq----MP~Gvpvatv 116 (165) |-|=.+ .+.+ +-.| +...... .|.|+.+.|+ T Consensus 105 IDvGi~~~~~gkl~GDvd~~~v~~~a~~iTPVPGGVGPmTv 145 (159) T pfam02882 105 IDVGINRVENGKLVGDVDFENVKEKASAITPVPGGVGPMTV 145 (159) T ss_pred EEECCCCCCCCCEECCCCHHHHHHHCEEECCCCCCCCHHHH T ss_conf 98022065899675787778999647286899995069999 No 303 >PRK13117 consensus Probab=26.07 E-value=56 Score=14.82 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=35.9 Q ss_pred CHHH--HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 9899--9999999998099826545301038799998898765359829999726766 Q gi|254780157|r 16 DWKI--MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAA 71 (165) Q Consensus 16 D~~~--~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aa 71 (165) |+|+ .++....++++|+... ..++..-+.+|+.++.+.. +|.-.+++..|-.+ T Consensus 130 DLP~eE~~~~~~~~~~~gl~~I-~lv~Ptt~~~Ri~~i~~~a--~GFiY~vs~~GvTG 184 (268) T PRK13117 130 DVPVEESAPFRQAAKKHGIAPI-FICPPNADDDTLRQIASLG--RGYTYLLSRAGVTG 184 (268) T ss_pred CCCHHHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHHHHC--CCEEEEEECCCCCC T ss_conf 9997885899999986798379-9847999999999999747--98599983677788 No 304 >cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. Probab=25.91 E-value=57 Score=14.80 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=72.9 Q ss_pred EEEEECCC---CC---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 99995881---69---8999999999998099826545301038799998898765359829999726766851134652 Q gi|254780157|r 7 VAIIMGSQ---SD---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 7 V~Ii~GS~---SD---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) +++|.-+- |+ -.+++.+...+.+.| |.+-++..+..+++-.++.+....++++-+|...... ...+..+ T Consensus 2 IGlivp~~~~~snpFf~~l~~gie~~~~~~G--y~lll~~~~~~~~~e~~~~~~l~~~~vdGiI~~~~~~---~~~~~~l 76 (268) T cd06277 2 IGLIASKRILNSPAFYSEIYRAIEEEAKKYG--YNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIS---TEYIKEI 76 (268) T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC---HHHHHHH T ss_conf 8999559877899779999999999999849--9899993899989999999999948987899978999---7999999 Q ss_pred --CCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCC------------HHHHHHH Q ss_conf --242036612577666750016998403569862044316753122899999997-0699------------9999999 Q gi|254780157|r 81 --TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAIL-ALDD------------KELTDRL 145 (165) Q Consensus 81 --t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il-~~~d------------~~i~~kl 145 (165) ...|++-+=... ++.++.+| ..|+ +.|+..|++-| ...+ ...++|+ T Consensus 77 ~~~~~P~V~id~~~----------------~~~~~~~V--~~Dn-~~a~~~a~~~L~~~Ghr~I~~i~~~~~~~~~~~R~ 137 (268) T cd06277 77 KELGIPFVLVDHYI----------------PNEKADCV--LTDN-YSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERY 137 (268) T ss_pred HHCCCCEEEECCCC----------------CCCCCCEE--EECH-HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH T ss_conf 97599899967768----------------99999889--9665-99999999999970998369972788881299999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780157|r 146 NEWRTQQTIS 155 (165) Q Consensus 146 ~~~r~~~~~~ 155 (165) .-|++-+++. T Consensus 138 ~Gf~~al~~~ 147 (268) T cd06277 138 EGYKKALLDH 147 (268) T ss_pred HHHHHHHHHC T ss_conf 9999999985 No 305 >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional Probab=25.90 E-value=57 Score=14.80 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=42.0 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE----------------------EEEHHCCHHHHHHHHHHHHH- Q ss_conf 9988749999588169899999999999809982654----------------------53010387999988987653- Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR----------------------IISAHRTPDRLIEFAKNARF- 57 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~----------------------V~SAHR~p~~l~~~~~~~~~- 57 (165) |+.+-||++|.|..|..-+...+++.|.+.|-..-+. +..=-+.++.+.+..+...+ T Consensus 2 ~~L~GK~alVTGaa~g~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254) T PRK07533 2 MPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPLLMPLDVREPGQLEAVFARIAEE 81 (254) T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 98999989996888980899999999998799999982887789999999974598189991699999999999999998 Q ss_pred -CCCEEEEEEECCC Q ss_conf -5982999972676 Q gi|254780157|r 58 -EGFKLIIAGAGGA 70 (165) Q Consensus 58 -~~~~viIa~AG~a 70 (165) .+++++|--||.+ T Consensus 82 ~G~iDilVnna~~~ 95 (254) T PRK07533 82 WGRLDFVLHSIAFA 95 (254) T ss_pred HCCCCEEEECCCCC T ss_conf 49977897422126 No 306 >PRK06181 short chain dehydrogenase; Provisional Probab=25.86 E-value=57 Score=14.79 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=35.5 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCCC Q ss_conf 6989999999999980998265453010387999988987653--59829999726766 Q gi|254780157|r 15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGAA 71 (165) Q Consensus 15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~aa 71 (165) -|.+-.++..+.++.+|.++....+ =-..++.+.+.++...+ ..++++|.-||... T Consensus 33 r~~~~l~~~~~~l~~~g~~~~~~~~-Dvs~~~~~~~~~~~~~~~~G~iDiLVNNAGi~~ 90 (263) T PRK06181 33 RNEERLASLAQELANYGAEALVVAT-DVSDAEACERLIEAAVAHFGGIDILVNNAGMTM 90 (263) T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 8999999999999954996799980-799999999999999998299648998785678 No 307 >PRK09271 flavodoxin; Provisional Probab=25.68 E-value=57 Score=14.77 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=35.1 Q ss_pred EEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEE--------------------EEEH-----HCCHHHHHHHHHHHHH Q ss_conf 4999958816--9899999999999809982654--------------------5301-----0387999988987653 Q gi|254780157|r 6 PVAIIMGSQS--DWKIMKYAADMLDTLGIDYEAR--------------------IISA-----HRTPDRLIEFAKNARF 57 (165) Q Consensus 6 kV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~--------------------V~SA-----HR~p~~l~~~~~~~~~ 57 (165) ||.|+.+|.| ...+++-+.+.|++.|.+.+.. +.+. -++|+++..|...++. T Consensus 2 KvlIvYaS~TGNTE~vA~~I~~~l~~~G~eV~~~e~d~~~~~~~~~d~~~yDl~llG~yTwgdG~lPdE~~DF~e~L~~ 80 (160) T PRK09271 2 RILLAYASLSGNTREVARMIAARCEEAGHAVTWVETDLQTLAQAPLDPEEYDLFLLGTWTDNAGRTPPEMKRFIAELVE 80 (160) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 1899998488768999999999999769823798701023220335611188899965704899896678999999986 No 308 >PRK08945 short chain dehydrogenase; Provisional Probab=25.56 E-value=57 Score=14.76 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=27.9 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH Q ss_conf 874999958816989999999999980998265453010387999988987653 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF 57 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~ 57 (165) +-||++|.|+.+. +...+++.|.+-|... .-..|+.+++.+..++.+. T Consensus 12 ~gK~~lITGas~G--IG~aiA~~la~~Ga~V----il~~r~~~~l~~~~~el~~ 59 (245) T PRK08945 12 KDRIILVTGAGDG--IGREAALTYARHGATV----ILLGRTEEKLEAVYDEIEA 59 (245) T ss_pred CCCEEEEECCCHH--HHHHHHHHHHHCCCEE----EEEECCHHHHHHHHHHHHH T ss_conf 9798999488618--9999999999879989----9996988999999999997 No 309 >cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP). Probab=25.54 E-value=57 Score=14.75 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=74.3 Q ss_pred EEEEECCCCCH--HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH-HHHCCC Q ss_conf 99995881698--999999999998099826545301038799998898765359829999726766851134-652242 Q gi|254780157|r 7 VAIIMGSQSDW--KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI-AAMTSL 83 (165) Q Consensus 7 V~Ii~GS~SD~--~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv-a~~t~~ 83 (165) |+|+--+++.+ .+.+.+.+..+++|++.++. ..+.-++++-.+.++++..++++.||...--+..+...+ .+.--. T Consensus 2 i~iv~~~~npf~~~v~~G~~~aA~e~Gv~v~~~-~~~~~d~~~Q~~~i~~~i~~~vDaIii~p~d~~~~~~~~~~a~agI 80 (271) T cd06314 2 IAVVTNGASPFWKIAEAGVKAAGKELGVDVEFV-VPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAAGI 80 (271) T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEE-ECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC T ss_conf 899289999669999999999999859989999-6899999999999999997599999992687455699999996599 Q ss_pred CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---------------CCHHHHHHHHHH Q ss_conf 03661257766675001699840356986204431675312289999999706---------------999999999999 Q gi|254780157|r 84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILAL---------------DDKELTDRLNEW 148 (165) Q Consensus 84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~---------------~d~~i~~kl~~~ 148 (165) |||.+=... |.+--... ++.|+ +.++..+++.|.- ......+|..-| T Consensus 81 pVv~~d~~~---------------~~~~~~~~--vg~dn-~~~G~~~~~~l~~~~~~~g~v~i~~g~~~~~~~~~R~~Gf 142 (271) T cd06314 81 KLITTDSDA---------------PDSGRYVY--IGTDN-YAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGI 142 (271) T ss_pred CEEEEECCC---------------CCCCCEEE--EECCH-HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH T ss_conf 889980788---------------87674699--90699-9999999999999759998699994589987899999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780157|r 149 RTQQTI 154 (165) Q Consensus 149 r~~~~~ 154 (165) ++.+.+ T Consensus 143 ~~~l~~ 148 (271) T cd06314 143 KDAIKD 148 (271) T ss_pred HHHHHH T ss_conf 999962 No 310 >PRK07024 short chain dehydrogenase; Provisional Probab=25.50 E-value=58 Score=14.75 Aligned_cols=65 Identities=23% Similarity=0.194 Sum_probs=33.3 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEE--------------------EEEEE-HHCCHHHHHHHHHHHHH--CCC Q ss_conf 87499995881698999999999998099826--------------------54530-10387999988987653--598 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYE--------------------ARIIS-AHRTPDRLIEFAKNARF--EGF 60 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~--------------------~~V~S-AHR~p~~l~~~~~~~~~--~~~ 60 (165) .||.++|.|.+| -+.++.+..|.+-|.... ..+.. =-..++.+.+..++..+ ..+ T Consensus 1 M~~~VlITGass--GIG~a~A~~la~~G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 78 (256) T PRK07024 1 MPLKVFITGASS--GIGQALAREYARQGATLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGCP 78 (256) T ss_pred CCCEEEEECCCH--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC T ss_conf 999899984602--999999999998899899998988999999997679976999811799999999999999983998 Q ss_pred EEEEEEECCC Q ss_conf 2999972676 Q gi|254780157|r 61 KLIIAGAGGA 70 (165) Q Consensus 61 ~viIa~AG~a 70 (165) +++|..||.. T Consensus 79 DilinNAGi~ 88 (256) T PRK07024 79 DVVIANAGIS 88 (256) T ss_pred CEEEECCCCC T ss_conf 7999888556 No 311 >PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=25.42 E-value=48 Score=15.27 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=38.8 Q ss_pred EEEEEECC--CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC Q ss_conf 49999588--1698999999999998099826545301038799998898765359829999726766851134652242 Q gi|254780157|r 6 PVAIIMGS--QSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL 83 (165) Q Consensus 6 kV~Ii~GS--~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~ 83 (165) ||+|+.-- ......+++..+.|++ +.+.-+.--+|......-. ...+-.++.+|+. |+.+.+--+. ..+.. T Consensus 2 Ki~iv~~~~~~~a~~~a~~l~~~L~~-~~~v~~d~~~a~~l~~~~~----~~~e~~~Dlvi~i-GGDGTlLr~~-~~~~~ 74 (272) T PRK01185 2 KVAFVIRKDCKRCANIARSIISLLPS-DWEIIYDKEAAKFLKKPGL----DINEISADIIIVI-GGDGTVLRTL-QFAKG 74 (272) T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEHHHHHHCCCCCC----CCCCCCCCEEEEE-CCCHHHHHHH-HHCCC T ss_conf 89999978998999999999999966-9919985688887099999----8556898899997-7839999999-87799 Q ss_pred CEEEECCC Q ss_conf 03661257 Q gi|254780157|r 84 PVLGVPII 91 (165) Q Consensus 84 PVIgVP~~ 91 (165) |++|+-.- T Consensus 75 PilGIN~G 82 (272) T PRK01185 75 PVLGINMG 82 (272) T ss_pred CEEEECCC T ss_conf 99998178 No 312 >TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457; InterPro: IPR006354 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are all from the Gram-positive (low-GC) bacteria.. Probab=25.41 E-value=57 Score=14.80 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=40.8 Q ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHH Q ss_conf 242036612577666750016998403569862044316753122899999997069999 Q gi|254780157|r 81 TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKE 140 (165) Q Consensus 81 t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~ 140 (165) .+=|=|++|+.-|-+=|-.||.|.+..-.||-+.- ||+-++. ===-|.+-||+.-+| T Consensus 143 ~TNgD~aiPTErGLlPGnGSL~~vl~v~TgVkPv~--iGKP~~I-I~e~A~~~LGt~~eE 199 (251) T TIGR01457 143 STNGDLAIPTERGLLPGNGSLIAVLEVATGVKPVY--IGKPEAI-IMEKALKRLGTEKEE 199 (251) T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE--EECCCHH-HHHHHHHHCCCCEEE T ss_conf 23888767623578885078999987735721488--7178735-799899870897024 No 313 >TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown. Probab=25.40 E-value=58 Score=14.74 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=42.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH-CCCCEEEEEEEHHCCHHHHHHHHHHHHH Q ss_conf 887499995881698999999999998-0998265453010387999988987653 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDT-LGIDYEARIISAHRTPDRLIEFAKNARF 57 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~-~gI~~~~~V~SAHR~p~~l~~~~~~~~~ 57 (165) ++-+|+-|.=--.|..+++++.+++++ |-++|++++.--.|+-.-+..|+++-++ T Consensus 69 L~V~VGrI~veled~~~i~~I~eiC~e~~pf~y~i~~G~f~r~~~TvtDY~KyG~~ 124 (150) T TIGR03260 69 LRVQVGRIILELEDEDIVEEIEEICKEMLPFGYEVRVGKFLRTKPTVTDYIKYGED 124 (150) T ss_pred EEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCHHHHHHCCCC T ss_conf 99998389999727668999999999757985563214786048854468770888 No 314 >TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.. Probab=25.37 E-value=58 Score=14.73 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=18.6 Q ss_pred CCCEEEEEEEHHC---CHHHHHHHHHHHHHCCCEEEE Q ss_conf 9982654530103---879999889876535982999 Q gi|254780157|r 31 GIDYEARIISAHR---TPDRLIEFAKNARFEGFKLII 64 (165) Q Consensus 31 gI~~~~~V~SAHR---~p~~l~~~~~~~~~~~~~viI 64 (165) .-+-.+.+.-+-| .|+++++++.++.++|++|+| T Consensus 107 ~~~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWv 143 (307) T TIGR01212 107 SEDDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWV 143 (307) T ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEE T ss_conf 3278057753688987747899999999549758999 No 315 >LOAD_USPA consensus Probab=25.36 E-value=58 Score=14.73 Aligned_cols=58 Identities=16% Similarity=0.290 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 99999999998099826545301038799998898765359829999726766851134652 Q gi|254780157|r 19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 (165) Q Consensus 19 ~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~ 80 (165) .+++....+...+.+++..+...+. . ..+.+..+..+.+++|.++-....+....-|. T Consensus 61 ~~~~~~~~~~~~~~~~~~~i~~g~~--~--~~I~~~~~~~~~dliVmG~~~~~~~~~~~~Gs 118 (135) T LOAD_USPA 61 LLEEALELLEEAGVKIDVEVEEGSP--A--EAILELAEESNADLIVVGSRGRGGLRRLLLGS 118 (135) T ss_pred HHHHHHHHHHHCCCCEEEEEEEECC--H--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCH T ss_conf 9999999998639973999999642--8--99999986057767999468997522460372 No 316 >cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor Probab=25.34 E-value=58 Score=14.73 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=48.8 Q ss_pred EEEEECCCCCHHH---HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCHHHHHH--H Q ss_conf 9999588169899---999999999809982654530103879999889876535982999972-676685113465--2 Q gi|254780157|r 7 VAIIMGSQSDWKI---MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA-GGAAHLPGMIAA--M 80 (165) Q Consensus 7 V~Ii~GS~SD~~~---~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A-G~aaaLpgvva~--~ 80 (165) |+++..+-++--+ .+.+...+.+.| |.+-+.+.+..+++-.++++.+.+++++-+|... .... ..... . T Consensus 2 IGvivpdi~npff~~l~~~ie~~~~~~G--y~~ll~~s~~d~~~e~~~i~~l~~~~vdGiIi~~~~~~~---~~~~~~~~ 76 (264) T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERG--YQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPD---DPYYLCQK 76 (264) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCH---HHHHHHHH T ss_conf 8999779878799999999999999869--989999389998999999999996699879976788987---99999997 Q ss_pred CCCCEEEE Q ss_conf 24203661 Q gi|254780157|r 81 TSLPVLGV 88 (165) Q Consensus 81 t~~PVIgV 88 (165) ...||+-+ T Consensus 77 ~~iPvV~i 84 (264) T cd06274 77 AGLPVVAL 84 (264) T ss_pred CCCCEEEE T ss_conf 59988998 No 317 >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH Probab=25.15 E-value=58 Score=14.71 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=48.9 Q ss_pred HHHHHHHHHHHCCCCEEEEEEEH---HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCC Q ss_conf 99999999998099826545301---03879999889876535982999972676685113465224203661257 Q gi|254780157|r 19 IMKYAADMLDTLGIDYEARIISA---HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPII 91 (165) Q Consensus 19 ~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~ 91 (165) ..+++...+++.|++....-.+= |+. +.++++.+.+++..+.++-.|. -|.-.+..+...|...+-++ T Consensus 60 s~ee~~~~~~e~Gap~V~itGGEPLLr~d---l~eIv~~a~~~g~~v~l~TNG~--Ll~k~i~~~~~~~~~~~~Vs 130 (318) T TIGR03470 60 SVEECLRAVDECGAPVVSIPGGEPLLHPE---IDEIVRGLVARKKFVYLCTNAL--LLEKKLDKFEPSPYLTFSVH 130 (318) T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCC---HHHHHHHHHHCCCEEEEECCHH--HHHHHHHHHHHCCCCEEEEE T ss_conf 99999999998499789951887455647---9999999997599799977552--00999999851888369998 No 318 >COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only] Probab=25.15 E-value=58 Score=14.71 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=63.3 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH--HC--CCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH-HH Q ss_conf 88749999588169899999999999--80--998265453010387999988987653598299997267668511-34 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLD--TL--GIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG-MI 77 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~--~~--gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpg-vv 77 (165) .+-+|+.+-|=....-........+- .. .|+..+.+++..-.|.+-.+..+.+.+.|++||...||..+-.-= +. T Consensus 160 k~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np~i~v~v~~~gsf~D~~k~k~~a~~li~~GaDVI~~~ag~~~~gv~~~A 239 (345) T COG1744 160 KSGKVGFVGGMDIPEVNRFINGFLAGAKSVNPDIKVKVVYVGSFSDPAKGKEAANALIDQGADVIYPAAGGTGVGVFQAA 239 (345) T ss_pred CCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH T ss_conf 56856899634152136789999999998489965899990686782778999999997699899867888762299999 Q ss_pred HHHCCCCEEEECCCCCCC Q ss_conf 652242036612577666 Q gi|254780157|r 78 AAMTSLPVLGVPIISQTL 95 (165) Q Consensus 78 a~~t~~PVIgVP~~~~~~ 95 (165) ..+..+. ||+=.+..++ T Consensus 240 ~~~~~~~-iGvdsDQ~~~ 256 (345) T COG1744 240 KELGAYA-IGVDSDQSYL 256 (345) T ss_pred HHHCCCC-EEEECCCCCC T ss_conf 9808971-6885210003 No 319 >TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566). Probab=24.99 E-value=59 Score=14.69 Aligned_cols=135 Identities=17% Similarity=0.233 Sum_probs=70.3 Q ss_pred EEEEEECCCCCH----HHHHHHHHHHHHCCCCEEEE---------EEEHHCCHHHHHHHHHHHHHCCCE-EEEEEECCCC Q ss_conf 499995881698----99999999999809982654---------530103879999889876535982-9999726766 Q gi|254780157|r 6 PVAIIMGSQSDW----KIMKYAADMLDTLGIDYEAR---------IISAHRTPDRLIEFAKNARFEGFK-LIIAGAGGAA 71 (165) Q Consensus 6 kV~Ii~GS~SD~----~~~~~a~~~L~~~gI~~~~~---------V~SAHR~p~~l~~~~~~~~~~~~~-viIa~AG~aa 71 (165) ||.+|.||-+.- ..++.+.+.|+..|++.+.. ...++-.+..+.++.+.... .+ ++|+-----+ T Consensus 1 KIv~IsGS~r~~S~t~~l~~~~~~~l~~~g~~~~~idl~dlp~~~l~~~~~~~~~v~~~~~~v~~--ADglIiatP~Y~~ 78 (171) T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQ--ADGVVVATPVYKA 78 (171) T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCEEEEECCCCCC T ss_conf 99999898998886999999999999875996998433568931002356799899999999985--7945997553167 Q ss_pred CCHHHH---------HHHCCCCEEEECCCCCCCC-------CCCCHHHHHH---CCCCCCCEEEECCCCCCH--HHHHHH Q ss_conf 851134---------6522420366125776667-------5001699840---356986204431675312--289999 Q gi|254780157|r 72 HLPGMI---------AAMTSLPVLGVPIISQTLG-------GIDSLLSIVQ---MPAGVPVGTMAIGQSGAI--NASLLA 130 (165) Q Consensus 72 aLpgvv---------a~~t~~PVIgVP~~~~~~~-------G~dallS~vq---MP~Gvpvatv~vg~~~~~--NAal~A 130 (165) ..||+. .++..+||+=+-+ +|... .+..+++.+. +|+|+-. ...+-.+ .-.+ T Consensus 79 S~sG~LKn~lD~l~~~~l~gKpVl~~at-gG~~~h~la~~~~Lrpvl~~l~A~~v~~~v~~----~~~~~~~~~~g~~-- 151 (171) T TIGR03567 79 SYSGVLKALLDLLPQRALRGKVVLPIAT-GGSIAHLLAIDYALKPVLSALGARHILPGVFA----LDSQIERDEDGTL-- 151 (171) T ss_pred CCCHHHHHHHHHCCHHHHCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHHHCCEECCCEEEE----ECHHHHCCCCCCC-- T ss_conf 7788999999957946648987999962-78446678999989999998398865531787----4203213677763-- Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 999706999999999999999999 Q gi|254780157|r 131 VAILALDDKELTDRLNEWRTQQTI 154 (165) Q Consensus 131 ~~Il~~~d~~i~~kl~~~r~~~~~ 154 (165) +-|+++++||.+.-++..+ T Consensus 152 -----~id~~~~~Rl~~~v~~~~~ 170 (171) T TIGR03567 152 -----QLDEEIKERLDEALEDLVQ 170 (171) T ss_pred -----CCCHHHHHHHHHHHHHHHH T ss_conf -----3499999999999999973 No 320 >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners. Probab=24.89 E-value=59 Score=14.68 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=6.8 Q ss_pred HHHHH-HHHHHHHCCCC Q ss_conf 99999-99999980998 Q gi|254780157|r 18 KIMKY-AADMLDTLGID 33 (165) Q Consensus 18 ~~~~~-a~~~L~~~gI~ 33 (165) ..++. .....+.|.|. T Consensus 20 ~~~k~F~~~lv~~f~I~ 36 (186) T cd01471 20 THVVPFLHTFVQNLNIS 36 (186) T ss_pred HHHHHHHHHHHHHCCCC T ss_conf 99999999999974969 No 321 >cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin, Probab=24.88 E-value=59 Score=14.67 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=27.2 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHH Q ss_conf 698999999999998099826545301038799998 Q gi|254780157|r 15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIE 50 (165) Q Consensus 15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~ 50 (165) ..-|....+...|++.||+||..-...-..++.+.+ T Consensus 7 ~~Sp~~~rvriaL~eKgi~ye~~~~~~~~~~~~~~~ 42 (74) T cd03058 7 WASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLA 42 (74) T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH T ss_conf 788589999999998699738997564558778996 No 322 >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional Probab=24.72 E-value=59 Score=14.66 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=37.8 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE----------------------EEEHHCCHHHHHHHHHHHHH- Q ss_conf 9988749999588169899999999999809982654----------------------53010387999988987653- Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR----------------------IISAHRTPDRLIEFAKNARF- 57 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~----------------------V~SAHR~p~~l~~~~~~~~~- 57 (165) |.++-|+++|.|..|..-+...+++.|.+-|-..-+. +..--..++.+.++.++..+ T Consensus 1 M~L~GK~alITGaag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvs~~~~v~~~~~~i~~~ 80 (274) T PRK08415 1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNDALKKRVEPIAQELGSPYVYELDVSKEEHFKSLAESIKKD 80 (274) T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH T ss_conf 92899879998999983799999999998699999984887899999999986299769990289999999999999998 Q ss_pred -CCCEEEEEEECCC Q ss_conf -5982999972676 Q gi|254780157|r 58 -EGFKLIIAGAGGA 70 (165) Q Consensus 58 -~~~~viIa~AG~a 70 (165) ..++++|-.||.. T Consensus 81 ~G~iDilVnnag~~ 94 (274) T PRK08415 81 LGEIDFIVHSVAFA 94 (274) T ss_pred HCCCCEEEECCCCC T ss_conf 58988885335557 No 323 >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity. Probab=24.60 E-value=60 Score=14.64 Aligned_cols=62 Identities=21% Similarity=0.090 Sum_probs=41.1 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 749999588169899999999999809982654530103879999889876535982999972676 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA 70 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~a 70 (165) .||++|.||+|= +...++..|.+-| +.+.+.+.-...+...+..+..+..|.+++=-.+-|+ T Consensus 1 ~ktalVTGaaSG--IG~~iA~~LA~aG--a~v~~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T 62 (258) T TIGR01963 1 GKTALVTGAASG--IGLAIAKALAAAG--ANVVVNDLGEADEGAEAAAKVATDAGGSVIYLVADVT 62 (258) T ss_pred CCEEEEECCCHH--HHHHHHHHHHHCC--CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 948999658716--7899999998729--8899846788789999999999961883577514788 No 324 >PTZ00249 variable surface protein Vir28; Provisional Probab=24.52 E-value=37 Score=15.95 Aligned_cols=41 Identities=27% Similarity=0.592 Sum_probs=27.1 Q ss_pred ECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEE Q ss_conf 26766851134652242036612577666750016998403569862044 Q gi|254780157|r 67 AGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTM 116 (165) Q Consensus 67 AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv 116 (165) +-+.++.+||+.+--+.||.|| -+||.||+=... -.||+|. T Consensus 424 ~~i~~aiS~vL~~VDPVPVvGV------SGGMGALFLLFR---YTPvGsF 464 (516) T PTZ00249 424 GTIKGAVSNVLEAVEPVPVLGV------SGGMGALYLLLK---YTPIGSL 464 (516) T ss_pred HHHHHHHHHHHCCCCCCCEEEE------CCCHHHHHHHHH---CCCCCCC T ss_conf 0123577653045788771111------472356888760---0665330 No 325 >cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Probab=24.36 E-value=60 Score=14.61 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=15.7 Q ss_pred CCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 09982654530103879999889876535982999972676685 Q gi|254780157|r 30 LGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL 73 (165) Q Consensus 30 ~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL 73 (165) .|++++..+..... ...+.+..+..+++.+|.++-....+ T Consensus 68 ~~~~~~~~~~~~~~----~~~i~~~a~~~~~dliV~G~~~~~~~ 107 (130) T cd00293 68 AGVKVETVVLEGDP----AEAILEAAEELGADLIVMGSRGRSGL 107 (130) T ss_pred CCCCEEEEEEECCH----HHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 79838999994661----89998877761188999947999754 No 326 >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment. Probab=24.33 E-value=60 Score=14.61 Aligned_cols=108 Identities=15% Similarity=0.018 Sum_probs=63.0 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEE---EHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH---- Q ss_conf 74999958816989999999999980998-265453---0103879999889876535982999972676685113---- Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGID-YEARII---SAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM---- 76 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~-~~~~V~---SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv---- 76 (165) |+|.||.--....+..+++...|-...-| +|+-|+ |--.+.+.+.++.+.+......+++ .+......+- T Consensus 1 P~VSIivP~~nee~~i~~~l~sll~qdYp~~Eiivv~d~s~D~t~~i~~~~~~~~p~~~~~~~~--~~~~~g~~~K~~~l 78 (196) T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLI--GGEKVGINPKVNNL 78 (196) T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE--CCCCCCCCHHHHHH T ss_conf 9679999689992779999999996689980899997899997899999987428776659997--68887844899999 Q ss_pred --HHHHCCCCEEEECCCCCCCCCCCCHHHHHHC--CCCCCCEE Q ss_conf --4652242036612577666750016998403--56986204 Q gi|254780157|r 77 --IAAMTSLPVLGVPIISQTLGGIDSLLSIVQM--PAGVPVGT 115 (165) Q Consensus 77 --va~~t~~PVIgVP~~~~~~~G~dallS~vqM--P~Gvpvat 115 (165) -.......+|.+ .+....-.-|.|-.+++. -+++.+.| T Consensus 79 ~~g~~~a~gdii~~-~DaD~~~~~~~L~~lv~~f~~p~vg~V~ 120 (196) T cd02520 79 IKGYEEARYDILVI-SDSDISVPPDYLRRMVAPLMDPGVGLVT 120 (196) T ss_pred HHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHHHHCCCCCCEEE T ss_conf 99999645899999-8899772955999999985699946796 No 327 >PRK13140 consensus Probab=24.15 E-value=61 Score=14.59 Aligned_cols=55 Identities=15% Similarity=0.373 Sum_probs=38.3 Q ss_pred CCHHHHH---HHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 6989999---999999980998265453010387999988987653598299997267668 Q gi|254780157|r 15 SDWKIMK---YAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH 72 (165) Q Consensus 15 SD~~~~~---~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa 72 (165) -|+|+-| +....+++.|+.. +..++.+-+.+|+.++.+.. +|.-.+++..|-.+. T Consensus 125 pDLP~ee~~~~~~~~~~~~~i~~-I~lvaPtt~~~Ri~~i~~~a--~gFiY~vs~~GvTG~ 182 (257) T PRK13140 125 PDLPFDDYQEHYKEIFEKYGLKN-IMLITPQTSEERIREIDSHT--DGFIYMVSSASTTGA 182 (257) T ss_pred CCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHC--CCCEEECCCCCCCCC T ss_conf 59985675899999999869977-99868999899999999739--996687036566688 No 328 >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Probab=23.99 E-value=61 Score=14.57 Aligned_cols=131 Identities=20% Similarity=0.219 Sum_probs=72.8 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH- Q ss_conf 9887499995881698999999999998099826545301038799998898765359829999726766851134652- Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM- 80 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~- 80 (165) ..+++|+||.=-+=-.--.|....+.+.+|+|..+-. +|..+.+.+..+.+. ..|+|--||++.--+-.++-+ T Consensus 231 ~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~-----~~~el~~ai~~l~~~-d~ILVDTaGrs~~D~~~i~el~ 304 (407) T COG1419 231 KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVY-----SPKELAEAIEALRDC-DVILVDTAGRSQYDKEKIEELK 304 (407) T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEC-----CHHHHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHH T ss_conf 2576068997144115289999999998699559963-----999999999985318-8899968998833789999999 Q ss_pred -------------------------------CCCCEEEECCC-CCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCH---- Q ss_conf -------------------------------24203661257-766675001699840356986204431675312---- Q gi|254780157|r 81 -------------------------------TSLPVLGVPII-SQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI---- 124 (165) Q Consensus 81 -------------------------------t~~PVIgVP~~-~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~---- 124 (165) ..+|.=||=.- -+--..+.+++|+++ -.+.||+-+..|-.=+. T Consensus 305 ~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~~~-e~~~PV~YvT~GQ~VPeDI~v 383 (407) T COG1419 305 ELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLMY-ETRLPVSYVTNGQRVPEDIVV 383 (407) T ss_pred HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEECCCCCCCHHHH T ss_conf 9970356621799984576468899999972458866168971335676338999999-968974997179878703553 Q ss_pred -HHHHHHHHHHHCCCH Q ss_conf -289999999706999 Q gi|254780157|r 125 -NASLLAVAILALDDK 139 (165) Q Consensus 125 -NAal~A~~Il~~~d~ 139 (165) |--+++.+|++...+ T Consensus 384 a~~~~Lv~~~~g~~~~ 399 (407) T COG1419 384 ANPDYLVRRILGTFAN 399 (407) T ss_pred CCHHHHHHHHHCCCCC T ss_conf 5868899998612144 No 329 >cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. Probab=23.87 E-value=62 Score=14.55 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=44.9 Q ss_pred CCCEEEEEECCCCCHHH-------------HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 88749999588169899-------------99999999980998265453010387999988987653598299997267 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKI-------------MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG 69 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~-------------~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~ 69 (165) .+|||+|+.-++-=.+. .--....|+++|++....-. .--+++.+.+.++++. +.++++|...|- T Consensus 167 ~~prV~iisTGdELv~~~~~~~~g~i~dsN~~~L~a~l~~~G~~~~~~~~-v~Dd~~~l~~~l~~a~-~~~DiiIttGG~ 244 (394) T cd00887 167 RRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGI-VPDDPEALREALEEAL-EEADVVITSGGV 244 (394) T ss_pred CCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCEEEEECC-CCCCHHHHHHHHHHHH-HCCCEEEEECCC T ss_conf 01389999623414288974899908735799999999978998999673-1899999999999764-309999992774 Q ss_pred C----CCCHHHHHHH Q ss_conf 6----6851134652 Q gi|254780157|r 70 A----AHLPGMIAAM 80 (165) Q Consensus 70 a----aaLpgvva~~ 80 (165) | .+++.++..+ T Consensus 245 S~G~~D~v~~~l~~l 259 (394) T cd00887 245 SVGDYDFVKEVLEEL 259 (394) T ss_pred CCCCCCHHHHHHHHC T ss_conf 268763399999977 No 330 >PRK12331 oxaloacetate decarboxylase; Provisional Probab=23.70 E-value=62 Score=14.53 Aligned_cols=150 Identities=21% Similarity=0.191 Sum_probs=82.4 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE---EEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 499995881698999999999998099826545---30103879999889876535982999972676685113465224 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI---ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V---~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) .+.-|.-+-||.+.++.+.+..++.|-..+.-+ .|.-.+++.+.++.+.+++-|.+ .|++.-+++-|..--+.... T Consensus 111 dv~rifd~lndi~nl~~ai~~~k~~G~~~~~~i~yt~sp~~t~~yyv~~a~~l~~~Gad-~I~ikD~aGll~P~~~~eLV 189 (463) T PRK12331 111 DIIRIFDALNDVRNLQTAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEIGAD-SICIKDMAGILTPYVAYELV 189 (463) T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHH T ss_conf 97887405664677899999999707869999997258867699999999999964998-89986786776889999999 Q ss_pred ---CCEEEECCC--CCCCCCCCCHHHHHHCCCCCCCEEEECC-----CC-CCHHHHHHHHHHHHCC---CHHHHHHHHHH Q ss_conf ---203661257--7666750016998403569862044316-----75-3122899999997069---99999999999 Q gi|254780157|r 83 ---LPVLGVPII--SQTLGGIDSLLSIVQMPAGVPVGTMAIG-----QS-GAINASLLAVAILALD---DKELTDRLNEW 148 (165) Q Consensus 83 ---~PVIgVP~~--~~~~~G~dallS~vqMP~Gvpvatv~vg-----~~-~~~NAal~A~~Il~~~---d~~i~~kl~~~ 148 (165) +-.+++|+. +.+-.|+.-.-++.-.-.|+-+.-+++. -+ -..++-+.+.+-.+.. |.+.-.++.+| T Consensus 190 ~aLk~~~~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~~~~s~gtsqP~~~s~v~~l~~~~~~~~ld~~~l~~i~~y 269 (463) T PRK12331 190 KCIKENVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVIALQDLGYDTGLDLEELSEIAEY 269 (463) T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 99997449856998368875799999999984999996235354679789879999999853899999899999999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780157|r 149 RTQQTISI 156 (165) Q Consensus 149 r~~~~~~v 156 (165) -++.+++- T Consensus 270 ~~~vr~~y 277 (463) T PRK12331 270 FNPIRDHY 277 (463) T ss_pred HHHHHHHH T ss_conf 99999999 No 331 >PRK06703 flavodoxin; Provisional Probab=23.50 E-value=63 Score=14.51 Aligned_cols=126 Identities=11% Similarity=0.140 Sum_probs=67.8 Q ss_pred CEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC Q ss_conf 749999588169--899999999999809982654530103879999889876535982999972676685113465224 Q gi|254780157|r 5 PPVAIIMGSQSD--WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS 82 (165) Q Consensus 5 pkV~Ii~GS~SD--~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~ 82 (165) .||.|+.||.+- ..+++.+.+.|+..|++.++.-.+-. .++.+.++ ..-+|++-.=+.+.+|.-.- T Consensus 2 ~Kv~I~YgS~tGnte~~A~~i~~~l~~~g~~v~~~~~~~~-~~~~l~~~-------d~li~gtsT~G~Ge~P~~~~---- 69 (151) T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM-DAEELLAY-------DGIILGSYTWGDGDLPYEAE---- 69 (151) T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHCC-------CCEEEEEECCCCCCCCHHHH---- T ss_conf 8189999898617899999999999857996389760319-98898428-------84599973379986846699---- Q ss_pred CCEEEECCCCCCCCCCCCHHHHHH--CCCCCCCEEEECCCCCC--HHHH--HHHHHHHHC---------------CCHHH Q ss_conf 203661257766675001699840--35698620443167531--2289--999999706---------------99999 Q gi|254780157|r 83 LPVLGVPIISQTLGGIDSLLSIVQ--MPAGVPVGTMAIGQSGA--INAS--LLAVAILAL---------------DDKEL 141 (165) Q Consensus 83 ~PVIgVP~~~~~~~G~dallS~vq--MP~Gvpvatv~vg~~~~--~NAa--l~A~~Il~~---------------~d~~i 141 (165) .++..+. -.+|..++..+.|..+- |+.| .+..++-.+ .+++- T Consensus 70 -----------------~f~~~l~~~~l~g~~~avfGlGDs~Y~~fc~a~~~~~~~l~~~Ga~~v~~~l~id~~pd~ded 132 (151) T PRK06703 70 -----------------DFHEDLENIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDED 132 (151) T ss_pred -----------------HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCHHH T ss_conf -----------------999998718889999999984388747783999999999998799883587699779998799 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999840 Q gi|254780157|r 142 TDRLNEWRTQQTISISEY 159 (165) Q Consensus 142 ~~kl~~~r~~~~~~v~~~ 159 (165) -++.++|-....+++++. T Consensus 133 ~~~c~~~~~~~a~~~k~~ 150 (151) T PRK06703 133 VEKCSNFAIAFAEKFAQQ 150 (151) T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 999999999999998735 No 332 >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional Probab=23.48 E-value=63 Score=14.50 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=36.8 Q ss_pred CCEEEEEECCCC----------------------CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC--C Q ss_conf 874999958816----------------------9899999999999809982654530103879999889876535--9 Q gi|254780157|r 4 APPVAIIMGSQS----------------------DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE--G 59 (165) Q Consensus 4 ~pkV~Ii~GS~S----------------------D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~--~ 59 (165) +-||++|.|+.+ +.+-.++..+.++..|.+... +..=.+.++.+.++.+...++ . T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~D~~~~~~v~~~~~~~~~~~g~ 81 (258) T PRK12429 3 KGKTALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAKAAEAIKKAGGKAIG-VAMDVTDEEAINAGIDKVVETFGG 81 (258) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHHHHHCC T ss_conf 9598999488758999999999987999999979889999999999844991899-983589999999999999998299 Q ss_pred CEEEEEEECCC Q ss_conf 82999972676 Q gi|254780157|r 60 FKLIIAGAGGA 70 (165) Q Consensus 60 ~~viIa~AG~a 70 (165) ++++|..||.. T Consensus 82 iDiLVnnAG~~ 92 (258) T PRK12429 82 VDILVNNAGIQ 92 (258) T ss_pred CCEEEECCCCC T ss_conf 70999899888 No 333 >PRK08278 short chain dehydrogenase; Provisional Probab=23.43 E-value=63 Score=14.50 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=41.1 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------------EEEHHCCHHHHHH Q ss_conf 9988749999588169899999999999809982654------------------------------5301038799998 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------------IISAHRTPDRLIE 50 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------------V~SAHR~p~~l~~ 50 (165) |+++-||++|.|+.+ -+...+++.|-+.|...-+. +..=.+.++.+.+ T Consensus 2 m~L~gKvalVTGas~--GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~l~~~~~~~a~e~~~~g~~~~~~~~Dv~~~~~v~~ 79 (273) T PRK08278 2 MSLSGKTLFITGASR--GIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAAEIEAAGGQALPLVGDVRDEDQVAA 79 (273) T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH T ss_conf 898999899948765--999999999998799899996772221334548999999999749908999711799999999 Q ss_pred HHHHHHH--CCCEEEEEEECCC Q ss_conf 8987653--5982999972676 Q gi|254780157|r 51 FAKNARF--EGFKLIIAGAGGA 70 (165) Q Consensus 51 ~~~~~~~--~~~~viIa~AG~a 70 (165) .++...+ .+++++|.-||.. T Consensus 80 ~v~~~~~~~G~iDiLVNNAG~~ 101 (273) T PRK08278 80 AVAKTVERFGGIDICVNNASAI 101 (273) T ss_pred HHHHHHHHHCCCCEEEECCCCC T ss_conf 9999999859962999878666 No 334 >TIGR00303 TIGR00303 conserved hypothetical protein TIGR00303; InterPro: IPR002805 Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin . It is one of the enzymes of the anaerobic pathway of cobalamin biosynthesis, and one of the four proteins (CobU, CobT, CobC, and CobS) involved in the synthesis of the lower ligand and the assembly of the nucleotide loop , . Vitamin B_12 (cobalamin) is used as a cofactor in a number of enzyme-catalysed reactions in bacteria, archaea and eukaryotes . The biosynthetic pathway to adenosylcobalamin from its five-carbon precursor, 5-aminolaevulinic acid, can be divided into three sections: (1) the biosynthesis of uroporphyrinogen III from 5-aminolaevulinic acid; (2) the conversion of uroporphyrinogen III into the ring-contracted, deacylated intermediate precorrin 6 or cobalt-precorrin 6; and (3) the transformation of this intermediate to form adenosylcobalamin . Cobalamin is synthesised by bacteria and archaea via two alternative routes that differ primarily in the steps of section 2 that lead to the contraction of the macrocycle and excision of the extruded carbon molecule (and its attached methyl group) . One pathway (exemplified by Pseudomonas denitrificans) incorporates molecular oxygen into the macrocycle as a prerequisite to ring contraction, and has consequently been termed the aerobic pathway. The alternative, anaerobic, route (exemplified by Salmonella typhimurium) takes advantage of a chelated cobalt ion, in the absence of oxygen, to set the stage for ring contraction . This entry represents a group of proteins predicted to have nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity.. Probab=23.31 E-value=63 Score=14.48 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=39.9 Q ss_pred HHHHHHHCCCCEEEEEEEHH-CCHHHH-HHHHHHH-------------------HHCCCEEEEEEECCCCCCHHHHHHH- Q ss_conf 99999980998265453010-387999-9889876-------------------5359829999726766851134652- Q gi|254780157|r 23 AADMLDTLGIDYEARIISAH-RTPDRL-IEFAKNA-------------------RFEGFKLIIAGAGGAAHLPGMIAAM- 80 (165) Q Consensus 23 a~~~L~~~gI~~~~~V~SAH-R~p~~l-~~~~~~~-------------------~~~~~~viIa~AG~aaaLpgvva~~- 80 (165) |.-.|.-+|++-+-+|-|-| .+|+++ .+.++.- +.-|..++.++||++ +++. T Consensus 161 AlGVL~aLG~dA~g~VsSS~p~nph~lK~~vV~~gL~~AG~e~~~s~~~~~~vl~AVGDpm~~~VAG~A------~~~~e 234 (350) T TIGR00303 161 ALGVLLALGYDAEGKVSSSMPHNPHELKRKVVREGLKKAGIEKKESSLDPFEVLEAVGDPMMPVVAGIA------IGSSE 234 (350) T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHH------HHHCC T ss_conf 999998737375850437888872889999999988756876678873579999716893138776156------42102 Q ss_pred CCCCEEEECCCCCCCCCCCCHHHHHH Q ss_conf 24203661257766675001699840 Q gi|254780157|r 81 TSLPVLGVPIISQTLGGIDSLLSIVQ 106 (165) Q Consensus 81 t~~PVIgVP~~~~~~~G~dallS~vq 106 (165) -..||| .-+| -.|-|++..+| T Consensus 235 ~~~PV~---LAGG--TQM~Av~ali~ 255 (350) T TIGR00303 235 RSKPVI---LAGG--TQMLAVLALIK 255 (350) T ss_pred CCCCEE---ECCC--HHHHHHHHHHH T ss_conf 588717---6475--78999999998 No 335 >cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia. Probab=23.29 E-value=63 Score=14.48 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=55.0 Q ss_pred EEEHHCCHHHHHHHHHHHHH-CCCEEEEEEECCCCCCHHHHHHHC-----CCCEEEECCCCCCCCCCCCHHHHHH--CCC Q ss_conf 53010387999988987653-598299997267668511346522-----4203661257766675001699840--356 Q gi|254780157|r 38 IISAHRTPDRLIEFAKNARF-EGFKLIIAGAGGAAHLPGMIAAMT-----SLPVLGVPIISQTLGGIDSLLSIVQ--MPA 109 (165) Q Consensus 38 V~SAHR~p~~l~~~~~~~~~-~~~~viIa~AG~aaaLpgvva~~t-----~~PVIgVP~~~~~~~G~dallS~vq--MP~ 109 (165) +.-.|.+. ..|+.+...+ ..++.+++..|.-+.+.|+..++- ..|+|||-+.+. +.+...++ .|- T Consensus 136 ~i~G~~T~--~~Ei~eQl~~~~~~d~vv~~~G~Gg~l~G~~~~l~~~~~~~i~iigVep~g~-----~~~~~s~~~g~~~ 208 (316) T cd06448 136 IWEGHSSM--VDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGA-----HSLNASLKAGKLV 208 (316) T ss_pred HHHHHHHH--HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC-----HHHHHHHHCCCEE T ss_conf 78787789--9999998534899709997678368899999999983799886786457787-----5899999878854 Q ss_pred CC-CCEEEECCCCCCH--HHHHHHHHH-----HHCCCHHHHHHHHH Q ss_conf 98-6204431675312--289999999-----70699999999999 Q gi|254780157|r 110 GV-PVGTMAIGQSGAI--NASLLAVAI-----LALDDKELTDRLNE 147 (165) Q Consensus 110 Gv-pvatv~vg~~~~~--NAal~A~~I-----l~~~d~~i~~kl~~ 147 (165) -+ +.-|.+.+.+.++ +..+-..+- +..+|+++.+..+. T Consensus 209 ~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~Vtd~ei~~a~~~ 254 (316) T cd06448 209 TLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLR 254 (316) T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHH T ss_conf 1699883887626998449999999863986999899999999999 No 336 >pfam09752 DUF2048 Uncharacterized conserved protein (DUF2048). The proteins in this family are conserved from plants to vertebrates. The function is unknown. Probab=23.24 E-value=63 Score=14.47 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=68.2 Q ss_pred CEEEEEECCCCCHHHHHH---HHHHHHHCCCCEEEE-------------EEEHHCC-----------HHHHHHHHHHHHH Q ss_conf 749999588169899999---999999809982654-------------5301038-----------7999988987653 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKY---AADMLDTLGIDYEAR-------------IISAHRT-----------PDRLIEFAKNARF 57 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~---a~~~L~~~gI~~~~~-------------V~SAHR~-----------p~~l~~~~~~~~~ 57 (165) ..|+|-+.++-|.-+-.. +...|++ ||...+- ..|.-|+ ..+...+..-.+. T Consensus 91 ~~vcihLagTGD~~f~rR~~~a~pLlk~-gi~siile~pyYG~RkP~~Q~~~~l~~VsDl~~mg~~~i~E~~~Ll~w~~~ 169 (337) T pfam09752 91 RPVCVHLAGTGDHGFWRRRRLARPLLKE-GIGSIILENPFYGLRRPKGQRRSSLRNVSDLFLMGAATILESRALLHWLER 169 (337) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8549984786751178898877889864-840688615644466984311252211879999777899999999999997 Q ss_pred CCC-EEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH Q ss_conf 598-2999972676685113465224203661257766675001699840356986204431675312289999999 Q gi|254780157|r 58 EGF-KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAI 133 (165) Q Consensus 58 ~~~-~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~I 133 (165) +|+ .+-+++--|-+|++..++++-.+|+--||+.+.+- -.||-|-++ ...+.|-..+.-|+ T Consensus 170 ~g~g~~g~tG~SmGG~mAalaas~~p~Pia~vPclswsS--------------As~vfteGv-Ls~~i~W~~L~~q~ 231 (337) T pfam09752 170 EGYGPLGVTGLSMGGHMAALAASNWPKPLAVVPCLAWSS--------------ASSVFTEGV-LSHSIAWDALEKQI 231 (337) T ss_pred CCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCC--------------CCHHHHHHH-CCCCCCHHHHHCHH T ss_conf 288861366423312777766405898731202204677--------------730431102-03666778872422 No 337 >PRK05876 short chain dehydrogenase; Provisional Probab=23.21 E-value=63 Score=14.47 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=38.2 Q ss_pred CCCEEEEEECCCCC----------------------HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--C Q ss_conf 88749999588169----------------------89999999999980998265453010387999988987653--5 Q gi|254780157|r 3 IAPPVAIIMGSQSD----------------------WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--E 58 (165) Q Consensus 3 ~~pkV~Ii~GS~SD----------------------~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~ 58 (165) .+-||++|.|+.|- .+-.+++.+.|+..|.+... +..=-+.++.+.+..++... . T Consensus 4 ~~gKvavITGaasGIG~a~A~~la~~Ga~Vvi~d~~~~~l~~~~~~l~~~g~~~~~-~~~Dvt~~~~v~~l~~~~~~~~G 82 (275) T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHG-VMCDVRHREEVTHLADEAFRLLG 82 (275) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHHHHHC T ss_conf 89987999282669999999999987998999979889999999999826984799-97888999999999999999848 Q ss_pred CCEEEEEEECCCCC Q ss_conf 98299997267668 Q gi|254780157|r 59 GFKLIIAGAGGAAH 72 (165) Q Consensus 59 ~~~viIa~AG~aaa 72 (165) .++++|.-||.... T Consensus 83 ~iDilvnNAGi~~~ 96 (275) T PRK05876 83 HVDVVFSNAGIVVG 96 (275) T ss_pred CCCEEECCCCCCCC T ss_conf 98851215744689 No 338 >PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Probab=23.15 E-value=64 Score=14.46 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=43.9 Q ss_pred CEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEEEHHC--CHHH-HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH Q ss_conf 749999588169--899999999999809982654530103--8799-99889876535982999972676685113465 Q gi|254780157|r 5 PPVAIIMGSQSD--WKIMKYAADMLDTLGIDYEARIISAHR--TPDR-LIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA 79 (165) Q Consensus 5 pkV~Ii~GS~SD--~~~~~~a~~~L~~~gI~~~~~V~SAHR--~p~~-l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~ 79 (165) ++|+|+.-...+ ....++....|++-|+++-+.--+++- .++. ..++.+- .+.++++|+ -|+.+.+-.+.-. T Consensus 6 k~IgIi~k~~~~~a~~~~~~l~~~L~~~g~~v~ld~~~a~~l~~~~~~~~~~~~~--~~~~Dlvi~-lGGDGT~L~aar~ 82 (292) T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEI--GQQADLAVV-VGGDGNMLGAART 82 (292) T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHH--CCCCCEEEE-ECCCHHHHHHHHH T ss_conf 8999995279858999999999999978998998347876529986554786685--305689999-7778899999998 Q ss_pred H--CCCCEEEECC Q ss_conf 2--2420366125 Q gi|254780157|r 80 M--TSLPVLGVPI 90 (165) Q Consensus 80 ~--t~~PVIgVP~ 90 (165) . ...|++|+=. T Consensus 83 ~~~~~~PilGIN~ 95 (292) T PRK03378 83 LARYDIKVIGINR 95 (292) T ss_pred HCCCCCCEEEEEC T ss_conf 5436996898837 No 339 >PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional Probab=23.08 E-value=64 Score=14.45 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=49.6 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH Q ss_conf 749999588169899999999999809982654530103879999889876535982999972676685113 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM 76 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv 76 (165) ....-++|. +|.++++++.+.-+++|....+.-.+ |.+.++..+. +.-|++.++---|......|. T Consensus 81 AD~vTVlg~-A~~~TI~~~~~~a~~~g~~v~vDli~-~~~~~~ak~~----~~lgv~~v~~H~g~D~q~~g~ 146 (220) T PRK13305 81 ANWMTIICA-APLATVEKGHAVAQSCGGEIQIELFG-NWTLDDARDW----HRIGVRQAIYHRGRDAQASGQ 146 (220) T ss_pred CCEEEEECC-CCHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHH----HHCCCCEEEEEECCCHHHCCC T ss_conf 988999566-89799999999999809989998458-9987899999----986998899983336765189 No 340 >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Probab=22.83 E-value=65 Score=14.42 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=24.6 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 874999958816989999999999980998265453010387999988987653598299997 Q gi|254780157|r 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66 (165) Q Consensus 4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~ 66 (165) .|++.++.++.. ++..+.++..|+.+-..|.|. +..+.+++.+.+.+|+- T Consensus 80 ~v~~v~~~~g~p-----~~~v~~l~~~g~~v~~~v~s~--------~~A~~a~~~GaD~iv~q 129 (236) T cd04730 80 GVPVVSFSFGPP-----AEVVERLKAAGIKVIPTVTSV--------EEARKAEAAGADALVAQ 129 (236) T ss_pred CCCEEEECCCCC-----HHHHHHHHHCCCEEEEECCCH--------HHHHHHHHCCCCEEEEE T ss_conf 999999879897-----899999998299899958989--------99999998189989997 No 341 >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions. Probab=22.83 E-value=65 Score=14.42 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=9.5 Q ss_pred EEHHCCHHHHHHHHHHHH Q ss_conf 301038799998898765 Q gi|254780157|r 39 ISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 39 ~SAHR~p~~l~~~~~~~~ 56 (165) ..-|.+...+.+.++... T Consensus 56 l~~~~~~~~l~~~I~~i~ 73 (165) T cd01481 56 LNTHSTKADVLGAVRRLR 73 (165) T ss_pred CCCCCCHHHHHHHHHHHH T ss_conf 677689999999998410 No 342 >TIGR00600 rad2 DNA excision repair protein (rad2); InterPro: IPR001044 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XPGC, an acidic protein that confers normal UV resistance in expressing cells, can correct XP-G. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms. XPGC cleaves one strand of the duplex at the border with the single-stranded region , .; GO: 0003697 single-stranded DNA binding, 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0005634 nucleus. Probab=22.79 E-value=56 Score=14.80 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHCCCCEEE Q ss_conf 999999999980998265 Q gi|254780157|r 19 IMKYAADMLDTLGIDYEA 36 (165) Q Consensus 19 ~~~~a~~~L~~~gI~~~~ 36 (165) ...|+.+.|..|||||.+ T Consensus 859 M~~E~QELL~lFGiPYI~ 876 (1127) T TIGR00600 859 MILESQELLRLFGIPYIV 876 (1127) T ss_pred HHHHHHHHHHHCCCCCCC T ss_conf 989989999856887334 No 343 >PRK07806 short chain dehydrogenase; Provisional Probab=22.77 E-value=65 Score=14.41 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=16.0 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 9887499995881698999999999998099 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI 32 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI 32 (165) +.+-||++|.|+.| -+...++..|.+-|- T Consensus 3 ~L~gKvalVTGas~--GIG~aiA~~la~~Ga 31 (248) T PRK07806 3 DLPGKIALVTGSSR--GIGAEVAKYLAGAGA 31 (248) T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCC T ss_conf 98998899937885--999999999998799 No 344 >TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250 The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota.. Probab=22.58 E-value=62 Score=14.56 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=28.5 Q ss_pred HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 99999999980998265453010387999988987653598299997267 Q gi|254780157|r 20 MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG 69 (165) Q Consensus 20 ~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~ 69 (165) ..=..++|.++||+..+-|.||-|- |++ .+|+++++|.- T Consensus 156 G~LT~K~L~~~GI~VTLIVDSAVRY------FI~-----E~D~VVVGAD~ 194 (303) T TIGR00511 156 GYLTVKTLRDAGIDVTLIVDSAVRY------FIK-----EVDIVVVGADA 194 (303) T ss_pred CHHHHHHHHHCCCEEEEEEECHHEE------EEE-----EEEEEEECCCC T ss_conf 0254667866594489985010100------112-----56589987850 No 345 >cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r Probab=22.31 E-value=66 Score=14.36 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=29.6 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHH Q ss_conf 6989999999999980998265453010387999988 Q gi|254780157|r 15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEF 51 (165) Q Consensus 15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~ 51 (165) .--|++..+...|..-|++||++-......|+++.++ T Consensus 7 ~~CPya~R~rlaL~~k~i~~e~~~vdL~~kp~~~l~~ 43 (71) T cd03060 7 RRCPYAMRARMALLLAGITVELREVELKNKPAEMLAA 43 (71) T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH T ss_conf 8993799999999986997799983676798999955 No 346 >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase; InterPro: IPR013375 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Many archaeal species lack cysteinyl-tRNA synthetase, an essential enzyme that provides Cys-tRNA(Cys) in other organisms. Instead, in a two step pathway, tRNA-Cys is acylated with O-phosphoserine (Sep) to form Sep-tRNA(Cys), which is subsequently converted to Cys-tRNA(Cys) . This pathway is also thought to function as the sole route of cysteine biosynthesis in these organisms. Several other archaeal species use both this pathway and direct tRNA(Cys) aminoacylation to synthesize Cys-tRNA(Cys), but this pathway appears to be the only route for cysteine biosynthesis. Proteins in this entry catalyse the second step in this pathway using pyridoxal phosphate and a sulphur donor to synthesize Cys from Sep while attached to the tRNA.. Probab=22.27 E-value=66 Score=14.35 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=64.2 Q ss_pred CCEEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCCEE-EEEEEC---CCCCC-H Q ss_conf 87499995---881698999999999998099826545-301038799998898765359829-999726---76685-1 Q gi|254780157|r 4 APPVAIIM---GSQSDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKL-IIAGAG---GAAHL-P 74 (165) Q Consensus 4 ~pkV~Ii~---GS~SD~~~~~~a~~~L~~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~~v-iIa~AG---~aaaL-p 74 (165) .|.-+++. |+.-.++=+++.+++.++.|||.-++- -+-=|.|--. +.+++ ||++.| |||.= - T Consensus 148 ~~~LallThvDG~YGNL~DA~kva~vc~~~gvPlLLNCAY~vGRmPv~~---------ke~~~DFiVGSGHKSMAASaP~ 218 (381) T TIGR02539 148 PVALALLTHVDGEYGNLADAKKVAKVCREKGVPLLLNCAYTVGRMPVSA---------KEIKADFIVGSGHKSMAASAPC 218 (381) T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEECCCC---------CCCCCCEEEECCCCHHHHCCCE T ss_conf 8348998402688675112456876654207862212450521003157---------7778767780685132212660 Q ss_pred HHHHHHCCCCEEEECCC--CCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 13465224203661257--7666750016998403569862044316753122899999997069999999999999999 Q gi|254780157|r 75 GMIAAMTSLPVLGVPII--SQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQ 152 (165) Q Consensus 75 gvva~~t~~PVIgVP~~--~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~ 152 (165) ||++-.-.+-=+=.=.| -|...|...=-==+.|. ||.+ .+|- -+.++| +-|.+.+|++.|.+|. T Consensus 219 GvLa~~eE~~~~v~r~SslrGdvsG~~~~~KEvElL-GCT~----------rGap--~~TlmA-SfP~VveRV~~Wd~Ev 284 (381) T TIGR02539 219 GVLAMSEEWEDKVLRKSSLRGDVSGRKFPVKEVELL-GCTS----------RGAP--IVTLMA-SFPHVVERVKRWDEEV 284 (381) T ss_pred EECCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEEC-CCCC----------CHHH--HHHHHH-CCCHHHHHCCCHHHHH T ss_conf 021454222340110232100336634474127744-8632----------4047--999973-2810112202315667 Q ss_pred HHH Q ss_conf 999 Q gi|254780157|r 153 TIS 155 (165) Q Consensus 153 ~~~ 155 (165) +++ T Consensus 285 ~kt 287 (381) T TIGR02539 285 KKT 287 (381) T ss_pred HHH T ss_conf 776 No 347 >PRK04759 consensus Probab=22.25 E-value=66 Score=14.35 Aligned_cols=86 Identities=21% Similarity=0.202 Sum_probs=39.7 Q ss_pred CCCCC-EEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEEE--EEH-HCCHHH-HHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 99887-49999588169---8999999999998099826545--301-038799-9988987653598299997267668 Q gi|254780157|r 1 MNIAP-PVAIIMGSQSD---WKIMKYAADMLDTLGIDYEARI--ISA-HRTPDR-LIEFAKNARFEGFKLIIAGAGGAAH 72 (165) Q Consensus 1 m~~~p-kV~Ii~GS~SD---~~~~~~a~~~L~~~gI~~~~~V--~SA-HR~p~~-l~~~~~~~~~~~~~viIa~AG~aaa 72 (165) |.... +|+|+. -..| ...+++..+.|++.|+++-+.- ... ...|.. .... .+. .+.++++|+. |+.+. T Consensus 1 M~~~f~~I~Iv~-k~~~~~~~~~~~~l~~~L~~~g~~v~vd~~~~~~l~~~~~~~~~~~-~~l-~~~~Dlvi~l-GGDGT 76 (294) T PRK04759 1 MKKPFNVIAIIG-KPRDQQAIQTHKELYHWLTSLGYTVFIDDRLAAILTDVPQEHFASL-VEL-GKKADLAIVV-GGDGN 76 (294) T ss_pred CCCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCH-HHC-CCCCCEEEEE-CCCHH T ss_conf 999997999994-1799799999999999998689999991688655334772223775-563-7665689998-47858 Q ss_pred CHHHHH--HHCCCCEEEECC Q ss_conf 511346--522420366125 Q gi|254780157|r 73 LPGMIA--AMTSLPVLGVPI 90 (165) Q Consensus 73 Lpgvva--~~t~~PVIgVP~ 90 (165) +-.+.- .....|++|+=. T Consensus 77 lL~aar~~~~~~~PilgiN~ 96 (294) T PRK04759 77 MLGAARVLSRFDISVIGVNR 96 (294) T ss_pred HHHHHHHHCCCCCCEEEEEC T ss_conf 99999986016996898845 No 348 >PRK05333 NAD-dependent deacetylase; Provisional Probab=22.11 E-value=67 Score=14.33 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 999988987653598299997267668 Q gi|254780157|r 46 DRLIEFAKNARFEGFKLIIAGAGGAAH 72 (165) Q Consensus 46 ~~l~~~~~~~~~~~~~viIa~AG~aaa 72 (165) +++.+++++ ....|+.++||+|+. T Consensus 10 ~~l~~~l~~---s~~ivvlTGAGiSte 33 (285) T PRK05333 10 DALQDFVER---HPRLFVLTGAGISTD 33 (285) T ss_pred HHHHHHHHH---CCCEEEEECCEEEHH T ss_conf 999999972---997899929730052 No 349 >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=21.93 E-value=67 Score=14.31 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=40.3 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE----------------------------------EEHHCCHH Q ss_conf 99887499995881698999999999998099826545----------------------------------30103879 Q gi|254780157|r 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI----------------------------------ISAHRTPD 46 (165) Q Consensus 1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V----------------------------------~SAHR~p~ 46 (165) |+++-||++|.|+..---+...++..|-+.|...-+.. ..--..++ T Consensus 1 m~L~gKvalVTGasr~~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~ 80 (257) T PRK12748 1 LPLMKKIAIVTGASRLNGIGAAICRVLAQKGIDIFFTYWSQYDKAMPWGMHDKEPFLLKEEIESYGVRCEMLEIDLSQSY 80 (257) T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHH T ss_conf 99999889992889998549999999998799999970752554434234606799999999965982899984689999 Q ss_pred HHHHHHHHHHH--CCCEEEEEEECCCC Q ss_conf 99988987653--59829999726766 Q gi|254780157|r 47 RLIEFAKNARF--EGFKLIIAGAGGAA 71 (165) Q Consensus 47 ~l~~~~~~~~~--~~~~viIa~AG~aa 71 (165) ...+.++...+ ..++++|-.||... T Consensus 81 ~~~~~~~~~~~~~G~iDiLVnnAg~~~ 107 (257) T PRK12748 81 SPNRLFYMVSERLGDPSILINNAAYST 107 (257) T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 999999999997499989998998899 No 350 >cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. Probab=21.90 E-value=67 Score=14.30 Aligned_cols=127 Identities=14% Similarity=0.095 Sum_probs=70.0 Q ss_pred EEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC Q ss_conf 99995881698999---999999998099826545301038799998898765359829999726766851134652242 Q gi|254780157|r 7 VAIIMGSQSDWKIM---KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL 83 (165) Q Consensus 7 V~Ii~GS~SD~~~~---~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~ 83 (165) |+++..+-+|--+. +.+.+.+++.| |.+-+++.+..+++-.++++.+..++++-+|...... ...-.--..... T Consensus 2 IGvivpdi~npf~~~i~~gi~~~~~~~g--y~~ll~~t~~~~~~e~~~l~~l~~~~vdGiI~~~~~~-~~~~~~~~~~~~ 78 (263) T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAG--LRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTRA-TLRRLAELRLSF 78 (263) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHCCCC T ss_conf 8999888877899999999999999869--9899997899989999999999816987999878878-767999970899 Q ss_pred CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCC-----------HHHHHHHHHHHHH Q ss_conf 036612577666750016998403569862044316753122899999997-0699-----------9999999999999 Q gi|254780157|r 84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAIL-ALDD-----------KELTDRLNEWRTQ 151 (165) Q Consensus 84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il-~~~d-----------~~i~~kl~~~r~~ 151 (165) |++-+-.... ..++| +| ..|+ +.++..+++-| ...+ ..-.+|+.-|++. T Consensus 79 P~V~idr~~~--------------~~~~~--~V--~~Dn-~~~~~~a~~~L~~~Ghr~I~~l~g~~~~~~~~R~~Gf~~a 139 (263) T cd06280 79 PVVLIDRAGP--------------AGRVD--AV--VLDN-RAAARTLVEHLVAQGYRRIGGLFGNASTTGAERRAGYEDA 139 (263) T ss_pred CEEEECCCCC--------------CCCCC--EE--EECH-HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH T ss_conf 6899925688--------------89998--89--9888-9999999999986089669999389984399999999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780157|r 152 QTIS 155 (165) Q Consensus 152 ~~~~ 155 (165) +++. T Consensus 140 l~~~ 143 (263) T cd06280 140 MRRH 143 (263) T ss_pred HHHC T ss_conf 9976 No 351 >PRK08285 cobH precorrin-8X methylmutase; Reviewed Probab=21.87 E-value=67 Score=14.30 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=30.2 Q ss_pred CCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH Q ss_conf 203661257766675001699840356986204431675312289999999 Q gi|254780157|r 83 LPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAI 133 (165) Q Consensus 83 ~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~I 133 (165) --|||+|+. -.+-..|-....+...|+|--|+ .|.-||- .+.|+-+ T Consensus 155 alVIG~PVG--FVgA~ESKe~L~~~~~~vP~It~-~GrkGGS--~vAaAiv 200 (208) T PRK08285 155 AAILGFPVG--FVGAAESKAALAADSRGVPYVIV-RGRRGGS--AMAAAAV 200 (208) T ss_pred CEEEECCCC--CCCCHHHHHHHHHCCCCCCEEEE-CCCCCCH--HHHHHHH T ss_conf 668876865--56729999999847899997986-1798769--9999999 No 352 >cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class II, prokaryotic enzyme is a homodimer. Class II enzymes are found primarily in prokaryotes and Archaeoglobus fulgidus and are soluble as they lack the membrane region. Enzymes catalyze the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR differ in their active site architecture. Probab=21.67 E-value=41 Score=15.71 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=26.3 Q ss_pred CHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-HHHH Q ss_conf 169984035698620443167531228999999970699-9999 Q gi|254780157|r 100 SLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD-KELT 142 (165) Q Consensus 100 allS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d-~~i~ 142 (165) .|.-.+.|| .+|+||+=+. .-.-.+-.+.+||+..+ .+++ T Consensus 305 ~L~gsitlP--l~vGtVGG~t-~~~P~~~~~l~iLgv~~A~~La 345 (417) T cd00644 305 KLVGELELP--LAVGTVGGST-KVHPLAKLALKILGVPSAKELA 345 (417) T ss_pred EEEEEEEEE--EEEEEECCCC-CCCHHHHHHHHHHCCCCHHHHH T ss_conf 799999986--0446762667-7586489999971899899999 No 353 >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Probab=21.34 E-value=69 Score=14.23 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=41.6 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC-CCE-EEEEEECCCCCCHH Q ss_conf 749999588169899999999999809982654530103879999889876535-982-99997267668511 Q gi|254780157|r 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE-GFK-LIIAGAGGAAHLPG 75 (165) Q Consensus 5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~-~~~-viIa~AG~aaaLpg 75 (165) .+|++|.--+--..-.+....+-+.+|+|.++- ++|+.+.+.+..++++ +++ ++|--||++---.- T Consensus 270 KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV-----~dp~eL~~AL~~lkdka~~DLILIDTAGRS~RD~~ 337 (436) T PRK11889 270 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-----RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASE 337 (436) T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE-----CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH T ss_conf 808999806634769999999999849943996-----88899999999876336888899929898846899 No 354 >COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Probab=21.34 E-value=69 Score=14.23 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=46.8 Q ss_pred HHHHHHHHHHHHHCCCCE-EEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH--------HHHHHHCCCCEEE Q ss_conf 899999999999809982-6545301038799998898765359829999726766851--------1346522420366 Q gi|254780157|r 17 WKIMKYAADMLDTLGIDY-EARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP--------GMIAAMTSLPVLG 87 (165) Q Consensus 17 ~~~~~~a~~~L~~~gI~~-~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp--------gvva~~t~~PVIg 87 (165) ....+++.+.++..|++. +..+....-..+.+.++..+ .+.++++.++.+...|. .-+..+++.||+= T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~---~~adliV~G~~g~~~l~~~llGsv~~~v~~~~~~pVlv 149 (154) T COG0589 73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEE---EDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLV 149 (154) T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH---CCCCEEEECCCCCCCCCCCEECCHHHHHHHHCCCCEEE T ss_conf 999999999999759971378984388738999999997---09999999998998653334163999999859999999 Q ss_pred ECCC Q ss_conf 1257 Q gi|254780157|r 88 VPII 91 (165) Q Consensus 88 VP~~ 91 (165) ||.. T Consensus 150 v~~~ 153 (154) T COG0589 150 VRSE 153 (154) T ss_pred EECC T ss_conf 8289 No 355 >PRK10329 glutaredoxin-like protein; Provisional Probab=21.33 E-value=69 Score=14.23 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=32.5 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH Q ss_conf 99588169899999999999809982654530103879999889876 Q gi|254780157|r 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA 55 (165) Q Consensus 9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~ 55 (165) |..=|+.+=+.++-....|++.||+|+..-++- .|+.+ ++++.. T Consensus 3 ITVYTkp~C~qC~aTKr~L~~~gI~y~~vdi~~--dpea~-~~vk~~ 46 (81) T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDR--VPEAA-DTLRAQ 46 (81) T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEECCC--CHHHH-HHHHHC T ss_conf 999769998247989999998799429985899--99999-999976 No 356 >PRK12744 short chain dehydrogenase; Provisional Probab=20.90 E-value=71 Score=14.17 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=36.2 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC----------------------------EEEEEEEHHCCHHHHHHHHH Q ss_conf 98874999958816989999999999980998----------------------------26545301038799998898 Q gi|254780157|r 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGID----------------------------YEARIISAHRTPDRLIEFAK 53 (165) Q Consensus 2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~----------------------------~~~~V~SAHR~p~~l~~~~~ 53 (165) +++-||++|.|+.+ -+...+++.|.+.|-. ... +..=-+.++.+.++.+ T Consensus 5 ~L~gKvalVTGgs~--GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~Dv~~~~~v~~~~~ 81 (257) T PRK12744 5 SLKGKVVLIAGGAK--NLGGLIARDLAAQGAKAVAIHYNSAATKADAEETVAAVKAAGAKAVA-FQADLTTAAAVEKLFD 81 (257) T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHH T ss_conf 98999899928875--89999999999879989999378743689999999999973992899-9768899999999999 Q ss_pred HHHH--CCCEEEEEEECCCC Q ss_conf 7653--59829999726766 Q gi|254780157|r 54 NARF--EGFKLIIAGAGGAA 71 (165) Q Consensus 54 ~~~~--~~~~viIa~AG~aa 71 (165) +..+ ..++++|..||... T Consensus 82 ~~~~~~G~iDilVnnAG~~~ 101 (257) T PRK12744 82 DAKAAFGRPDIAINTVGKVL 101 (257) T ss_pred HHHHHCCCCCEEEECCCCCC T ss_conf 99998099889997664456 No 357 >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional Probab=20.78 E-value=71 Score=14.16 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=23.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCC Q ss_conf 8874999958816989999999999980998 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGID 33 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~ 33 (165) ++-|+++|.|..|..-+...+++.|.+.|.. T Consensus 5 L~GK~alITGaa~~~GIG~aiA~~La~~GA~ 35 (271) T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAE 35 (271) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 7999799979999854999999999986999 No 358 >cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators. Probab=20.71 E-value=71 Score=14.15 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=46.9 Q ss_pred EEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--HC Q ss_conf 999958816989---9999999999809982654530103879999889876535982999972676685113465--22 Q gi|254780157|r 7 VAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--MT 81 (165) Q Consensus 7 V~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--~t 81 (165) |+|++.+-+|.- +++.+...+++.| |.+-+++..-.+++-.++++....++++-+|..... .-+..+.. .. T Consensus 2 IGvivp~l~npf~~~l~~gie~~~~~~g--y~~li~~s~~~~~~e~~~i~~l~~~~vDGiI~~~~~--~~~~~~~~l~~~ 77 (268) T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYK--YNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK--ISEEHREEFKRS 77 (268) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHC T ss_conf 8999789879899999999999999879--989999899998999999999996699999982677--999999999966 Q ss_pred CCCEEEE Q ss_conf 4203661 Q gi|254780157|r 82 SLPVLGV 88 (165) Q Consensus 82 ~~PVIgV 88 (165) ..||+-+ T Consensus 78 ~~PvV~i 84 (268) T cd06298 78 PTPVVLA 84 (268) T ss_pred CCCEEEE T ss_conf 9989995 No 359 >TIGR02181 GRX_bact glutaredoxin 3; InterPro: IPR011900 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulphides .; GO: 0006118 electron transport, 0045454 cell redox homeostasis. Probab=20.56 E-value=72 Score=14.13 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=39.2 Q ss_pred CCCCCHHHHHHHHHHHHHCCC-CEEEEEEEHHCCH-HHHHHHHHHHH-HCC-CEEEEE Q ss_conf 881698999999999998099-8265453010387-99998898765-359-829999 Q gi|254780157|r 12 GSQSDWKIMKYAADMLDTLGI-DYEARIISAHRTP-DRLIEFAKNAR-FEG-FKLIIA 65 (165) Q Consensus 12 GS~SD~~~~~~a~~~L~~~gI-~~~~~V~SAHR~p-~~l~~~~~~~~-~~~-~~viIa 65 (165) =+...=|+...|...|++-|| .|+.--++. .| ....+.++... .+- +++||. T Consensus 4 YT~~~CPYC~rAK~LL~~kGv~~~~Ei~vd~--dpD~~r~eM~~Rs~Gr~TVPQIFIg 59 (82) T TIGR02181 4 YTKPYCPYCSRAKALLESKGVGTFTEIRVDG--DPDALRDEMMQRSGGRRTVPQIFIG 59 (82) T ss_pred ECCCCCCCCHHHHHHHHHCCCCCCEEEECCC--CCCHHHHHHHHHHCCCCCCCEEEEC T ss_conf 3159988026889999856988630344579--8106889999982899404337629 No 360 >cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans. Probab=20.46 E-value=72 Score=14.11 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=29.7 Q ss_pred HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE Q ss_conf 99999999809982654530103879999889876535982 Q gi|254780157|r 21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61 (165) Q Consensus 21 ~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~ 61 (165) ++....|++.||+|++.---+.+|-++..++......+..+ T Consensus 2 ~rl~~~L~~~~I~y~~~~H~~~~t~~eaa~~~g~~~~~~~K 42 (153) T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAK 42 (153) T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEE T ss_conf 78999999879976999879999899999875999672566 No 361 >smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins. Probab=20.41 E-value=72 Score=14.11 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=34.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 499995881698999999999998099826545301038799998898765359829999726 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG 68 (165) ++.+|..|.+|....+++. +-.+.+.+.+-|..+....+.++....+ ..|||+.-+ T Consensus 1 ~~liIVEg~~d~~~i~~~~------~~~~~~~~~~G~~~~~~~i~~l~~~~~~-~eViiatD~ 56 (76) T smart00493 1 KVLIIVEGPADAIALEKAG------GFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDP 56 (76) T ss_pred CEEEEECCHHHHHHHHHHC------CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEECCC T ss_conf 9799987888999999856------9997999821523504489999986338-979997698 No 362 >PRK06947 glucose-1-dehydrogenase; Provisional Probab=20.35 E-value=72 Score=14.10 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=26.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC Q ss_conf 989999999999980998265453010387999988987653--5982999972676 Q gi|254780157|r 16 DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA 70 (165) Q Consensus 16 D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a 70 (165) |..-.++....+++.|-.+... ..=-..++.+.++.+...+ ..++++|.-||.. T Consensus 40 ~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~~~~~G~iD~lVnNAG~~ 95 (252) T PRK06947 40 DAAAAEETADAVRAAGGRACVV-AGDVANEADVIAMFDAVQAAFGRLDALVNNAGIV 95 (252) T ss_pred CHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 8789999999999649928999-8479999999999999999849988999876435 No 363 >KOG1478 consensus Probab=20.10 E-value=73 Score=14.06 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=34.6 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHH Q ss_conf 887499995881698999999999998099826545301038799998898765 Q gi|254780157|r 3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNAR 56 (165) Q Consensus 3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~ 56 (165) |.-||++|.|+.|.+-.. -|...|+.-+-+....++-+-|+..+.++.+.... T Consensus 1 ~~RKvalITGanSglGl~-i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk 53 (341) T KOG1478 1 MMRKVALITGANSGLGLA-ICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALK 53 (341) T ss_pred CCCEEEEEECCCCCCCHH-HHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHH T ss_conf 972389994488864399-99999751577616999997177267999999999 No 364 >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. . Probab=20.10 E-value=73 Score=14.06 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=32.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCE-EEEEE-ECCC Q ss_conf 9899999999999809982654-530103879999889876535982-99997-2676 Q gi|254780157|r 16 DWKIMKYAADMLDTLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFK-LIIAG-AGGA 70 (165) Q Consensus 16 D~~~~~~a~~~L~~~gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~-viIa~-AG~a 70 (165) |..+.+.=.+.|+++||++-+. +.+=.=|+++|+ ++| |.| |||+. ||+- T Consensus 191 pKei~~~E~k~LkklGv~fr~~~lvGkt~TL~eL~---~~Y---GfDAVFIgtGAG~p 242 (462) T TIGR01316 191 PKEIVETEVKKLKKLGVKFRTDYLVGKTVTLEELL---EKY---GFDAVFIGTGAGLP 242 (462) T ss_pred CHHHHHHHHHHHHHCCEEEEECCEECCCHHHHHHH---HHC---CCCEEEEEECCCCC T ss_conf 75788988887632663799443750511288888---751---97079995068987 No 365 >pfam02350 Epimerase_2 UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyses the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in this instance Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase is the kinase domain. Probab=20.03 E-value=74 Score=14.05 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=48.1 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCC---CEEEEEEEH---HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH Q ss_conf 499995881698999999999998099---826545301---03879999889876535982999972676685113465 Q gi|254780157|r 6 PVAIIMGSQSDWKIMKYAADMLDTLGI---DYEARIISA---HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA 79 (165) Q Consensus 6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI---~~~~~V~SA---HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~ 79 (165) ...|..|+.=|..+.+... +.|+| ++.+..-+. .-...-+.++.+......++.++....+-.+|++++++ T Consensus 11 ~~li~TG~H~~~~~g~t~~---e~f~i~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~PD~vlv~GDr~e~la~aiaa 87 (346) T pfam02350 11 LQLVVTGQHLDREMGDTFF---EGFGIPKPDYDLNVDSQSLAKSTGRILIGLEDVLEEEKPDLVLVLGDTNETLAGALAA 87 (346) T ss_pred EEEEECCCCCCHHHHHHHH---HHCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH T ss_conf 7999828889987867998---6569999974458999989999999999999999982999999968971588999999 Q ss_pred H-CCCCEEEE Q ss_conf 2-24203661 Q gi|254780157|r 80 M-TSLPVLGV 88 (165) Q Consensus 80 ~-t~~PVIgV 88 (165) . ...||+=+ T Consensus 88 ~~~~ipi~Hi 97 (346) T pfam02350 88 FYLRIPVAHV 97 (346) T ss_pred HHHCCCEEEE T ss_conf 9819848995 Done!