Query         gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 165
No_of_seqs    128 out of 2082
Neff          4.9 
Searched_HMMs 39220
Date          Sun May 22 20:23:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780157.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01162 purE phosphoribosyla 100.0       0       0  450.2  15.3  158    7-164     1-159 (159)
  2 COG0041 PurE Phosphoribosylcar 100.0       0       0  394.2  17.1  159    4-164     2-160 (162)
  3 pfam00731 AIRC AIR carboxylase 100.0       0       0  389.6  16.0  150    5-156     1-150 (150)
  4 COG1691 NCAIR mutase (PurE)-re 100.0 4.8E-28 1.2E-32  203.1  10.5  123    6-136   119-249 (254)
  5 KOG2835 consensus               99.9   4E-26   1E-30  190.7   3.7  158    3-164   207-364 (373)
  6 PRK09423 gldA glycerol dehydro  97.4  0.0016 4.1E-08   44.2   8.9   90    5-94     30-120 (366)
  7 pfam00465 Fe-ADH Iron-containi  97.1   0.005 1.3E-07   41.1   8.7   90    5-94     23-133 (312)
  8 PRK13054 lipid kinase; Reviewe  96.8   0.021 5.3E-07   37.1   9.5   88    1-92      1-93  (299)
  9 PRK13337 putative lipid kinase  96.6    0.03 7.8E-07   36.0   9.6   86    3-92      1-93  (305)
 10 PRK13055 putative lipid kinase  96.3   0.077   2E-06   33.4   9.8   87    3-92      1-94  (334)
 11 PRK10624 L-1,2-propanediol oxi  96.2   0.045 1.2E-06   34.9   8.2   90    5-94     30-142 (381)
 12 PRK09860 putative alcohol dehy  96.0    0.06 1.5E-06   34.0   8.3   90    5-94     32-142 (383)
 13 PRK00843 egsA NAD(P)-dependent  95.6     0.1 2.7E-06   32.5   8.1   89    4-93     34-123 (351)
 14 COG1454 EutG Alcohol dehydroge  95.5    0.15 3.9E-06   31.5   8.5   90    5-94     30-140 (377)
 15 pfam01761 DHQ_synthase 3-dehyd  95.4     0.3 7.6E-06   29.6   9.8   88    4-91     19-115 (310)
 16 COG0371 GldA Glycerol dehydrog  95.2   0.074 1.9E-06   33.5   6.3  100    5-106    31-132 (360)
 17 pfam06506 PrpR_N Propionate ca  95.1    0.16   4E-06   31.4   7.7  111   28-151     4-122 (169)
 18 cd06321 PBP1_ABC_sugar_binding  94.1     0.6 1.5E-05   27.6  14.0  129    6-154     1-148 (271)
 19 PRK00861 putative lipid kinase  93.8     0.7 1.8E-05   27.2   9.4   83    3-91      1-89  (296)
 20 cd01539 PBP1_GGBP Periplasmic   93.2    0.87 2.2E-05   26.5  14.9   86    6-91      1-91  (303)
 21 COG2984 ABC-type uncharacteriz  93.2    0.59 1.5E-05   27.6   7.3   79    6-86     32-113 (322)
 22 cd06305 PBP1_methylthioribose_  92.7       1 2.6E-05   26.1   9.1   82    6-89      1-87  (273)
 23 PRK11914 diacylglycerol kinase  92.5     1.1 2.8E-05   25.9  10.1   83    4-91      6-94  (304)
 24 COG2515 Acd 1-aminocyclopropan  92.0     1.3 3.2E-05   25.5   8.2   97    7-106   119-231 (323)
 25 cd06325 PBP1_ABC_uncharacteriz  91.5     1.4 3.5E-05   25.3   7.5   84    6-91      1-90  (281)
 26 PRK13805 bifunctional acetalde  91.3     1.3 3.3E-05   25.4   7.2   74    4-77    482-557 (862)
 27 PRK13059 putative lipid kinase  90.9     1.6 4.1E-05   24.8   9.5   97    5-110     2-105 (294)
 28 COG3199 Predicted inorganic po  90.7     1.3 3.3E-05   25.4   6.7   72   44-136    85-157 (355)
 29 TIGR03405 Phn_Fe-ADH phosphona  89.3     1.8 4.5E-05   24.6   6.5   90    5-95     24-139 (355)
 30 cd06310 PBP1_ABC_sugar_binding  88.8     2.4   6E-05   23.7  13.8   83    6-88      1-88  (273)
 31 pfam04392 ABC_sub_bind ABC tra  88.4     2.5 6.4E-05   23.6   7.7   72   18-91     15-89  (292)
 32 PRK10310 galactitol-specific P  88.3     2.5 6.5E-05   23.5   7.2   83    3-103     1-86  (94)
 33 PRK00002 aroB 3-dehydroquinate  88.0     2.6 6.7E-05   23.4   9.1   87    5-91     33-128 (360)
 34 cd06316 PBP1_ABC_sugar_binding  87.8     2.7 6.9E-05   23.3   8.4   82    6-88      1-87  (294)
 35 cd06300 PBP1_ABC_sugar_binding  87.4     2.9 7.3E-05   23.2   7.7   84    6-89      1-92  (272)
 36 PRK05653 fabG 3-ketoacyl-(acyl  87.3     2.9 7.4E-05   23.1   8.2   49    1-55      1-49  (246)
 37 KOG2835 consensus               86.8    0.57 1.4E-05   27.7   2.7   62   18-81    250-312 (373)
 38 cd06301 PBP1_rhizopine_binding  85.8     3.5 8.9E-05   22.6  12.2   82    6-88      1-87  (272)
 39 TIGR02483 PFK_mixed phosphofru  85.5       1 2.6E-05   26.1   3.4   80   46-131    93-192 (339)
 40 cd01538 PBP1_ABC_xylose_bindin  85.3     3.7 9.4E-05   22.5   8.8   82    6-89      1-87  (288)
 41 PRK02649 ppnK inorganic polyph  84.8     1.8 4.5E-05   24.5   4.4   86    4-90      1-100 (305)
 42 PRK09072 short chain dehydroge  84.7     3.9  0.0001   22.3   7.3   31    1-33      1-31  (262)
 43 cd03786 GT1_UDP-GlcNAc_2-Epime  84.3     4.1  0.0001   22.2   8.4   41    6-46      1-42  (363)
 44 PRK02645 ppnK inorganic polyph  83.2     2.5 6.4E-05   23.6   4.6   85    1-90      1-89  (304)
 45 cd03522 MoeA_like MoeA_like. T  82.9     4.6 0.00012   21.8   6.5  101    4-105   159-293 (312)
 46 cd06322 PBP1_ABC_sugar_binding  82.6     4.7 0.00012   21.8  14.4   81    7-89      2-87  (267)
 47 pfam00781 DAGK_cat Diacylglyce  82.5     4.8 0.00012   21.7   6.6   83   21-111    18-106 (127)
 48 cd01391 Periplasmic_Binding_Pr  82.2     4.9 0.00013   21.7   9.7   87    6-92      1-92  (269)
 49 cd01536 PBP1_ABC_sugar_binding  81.8     5.1 0.00013   21.6   9.4   81    6-88      1-86  (267)
 50 PRK10586 hypothetical protein;  81.7     4.7 0.00012   21.8   5.6   87    5-94     35-122 (362)
 51 PRK01372 ddl D-alanine--D-alan  81.5     4.3 0.00011   22.1   5.3  104    2-115     2-115 (304)
 52 PRK06346 consensus              81.3     5.3 0.00014   21.4   8.3   52    1-58      1-52  (251)
 53 cd06306 PBP1_TorT-like TorT-li  80.9     5.5 0.00014   21.4   8.8   83    6-88      1-87  (268)
 54 cd06318 PBP1_ABC_sugar_binding  80.8     5.5 0.00014   21.4   9.2   82    6-89      1-87  (282)
 55 cd06320 PBP1_allose_binding Pe  80.7     5.6 0.00014   21.3   8.7   84    6-89      1-89  (275)
 56 cd06304 PBP1_BmpA_like Peripla  80.4     5.7 0.00014   21.3   7.0   59    7-68      2-65  (260)
 57 cd06323 PBP1_ribose_binding Pe  80.2     5.8 0.00015   21.2   9.3   81    7-89      2-87  (268)
 58 PRK07774 short chain dehydroge  78.8     6.4 0.00016   20.9   8.5   57    1-63      2-58  (250)
 59 PRK07890 short chain dehydroge  78.7     6.4 0.00016   20.9   8.5   55    1-61      1-55  (258)
 60 cd06354 PBP1_BmpA_PnrA_like Pe  76.6     7.3 0.00019   20.5   7.5   59    6-67      1-65  (265)
 61 COG1597 LCB5 Sphingosine kinas  76.6     7.4 0.00019   20.5   6.7  108   12-123    14-130 (301)
 62 TIGR02638 lactal_redase lactal  76.4     7.2 0.00018   20.6   5.2  101   17-121    43-194 (380)
 63 PRK06949 short chain dehydroge  76.0     7.6 0.00019   20.4   8.2   67    1-70      5-97  (258)
 64 PRK07454 short chain dehydroge  75.6     7.8  0.0002   20.4   8.2   67    1-70      1-94  (241)
 65 cd06319 PBP1_ABC_sugar_binding  75.4     7.9  0.0002   20.3  15.0   81    6-89      1-87  (277)
 66 COG0381 WecB UDP-N-acetylgluco  75.1     6.8 0.00017   20.7   4.8   55    4-58      3-58  (383)
 67 PRK13057 putative lipid kinase  74.9     8.1 0.00021   20.3   6.9   68   18-91     13-82  (287)
 68 cd06311 PBP1_ABC_sugar_binding  74.5     8.3 0.00021   20.2   8.8   84    7-90      2-93  (274)
 69 cd06309 PBP1_YtfQ_like Peripla  73.5     8.8 0.00022   20.0  10.7   81    7-89      2-87  (273)
 70 PRK08217 fabG 3-ketoacyl-(acyl  73.4     8.9 0.00023   20.0   8.3   68    1-69      1-92  (253)
 71 PRK07576 short chain dehydroge  72.1     9.5 0.00024   19.8   8.8   53    1-59      4-56  (260)
 72 PRK09701 D-allose transporter   71.8     9.6 0.00025   19.8   8.6   86    4-89     24-114 (311)
 73 KOG3857 consensus               71.5     9.8 0.00025   19.7   6.3  111    5-115    71-236 (465)
 74 COG4126 Hydantoin racemase [Am  71.3     2.1 5.3E-05   24.1   1.4   62   24-86    126-201 (230)
 75 PRK07231 fabG 3-ketoacyl-(acyl  70.3      10 0.00026   19.6   6.7   30    1-32      2-31  (250)
 76 PRK03708 ppnK inorganic polyph  70.2     4.8 0.00012   21.8   3.0   84    6-90      2-88  (278)
 77 PRK06940 short chain dehydroge  70.0      10 0.00027   19.5   7.8   52    2-61      2-53  (277)
 78 PRK03202 6-phosphofructokinase  69.8      11 0.00027   19.5   8.3   87    3-91      1-127 (323)
 79 PRK07814 short chain dehydroge  69.7      11 0.00027   19.5   8.5   66    2-70      7-98  (263)
 80 PRK06124 gluconate 5-dehydroge  69.0      11 0.00028   19.4   8.0   53    1-59     10-62  (259)
 81 cd06353 PBP1_BmpA_Med_like Per  68.5      11 0.00029   19.3   6.5  128    6-150     1-143 (258)
 82 PRK12939 short chain dehydroge  68.2      11 0.00029   19.3   8.4   66    2-70      4-95  (250)
 83 cd06308 PBP1_sensor_kinase_lik  68.0      12 0.00029   19.3   7.7   81    7-89      2-88  (270)
 84 PRK08862 short chain dehydroge  67.8      12  0.0003   19.2   7.5   30    1-32      1-30  (227)
 85 PRK10355 xylF D-xylose transpo  67.5      12  0.0003   19.2   9.1   85    4-90     25-114 (330)
 86 COG0796 MurI Glutamate racemas  66.6      12 0.00031   19.1   5.1   89    3-91      4-100 (269)
 87 PRK12745 3-ketoacyl-(acyl-carr  66.5      12 0.00032   19.1   8.4   67    1-70      1-94  (259)
 88 PRK08277 D-mannonate oxidoredu  66.3      12 0.00032   19.1   7.7   66    1-69      6-97  (278)
 89 cd03419 GRX_GRXh_1_2_like Glut  65.5      13 0.00033   19.0   6.2   74    9-106     2-75  (82)
 90 pfam02016 Peptidase_S66 LD-car  65.4      13 0.00033   18.9   6.4   66    7-72      1-74  (281)
 91 TIGR01357 aroB 3-dehydroquinat  65.0      13 0.00034   18.9   8.3  148    5-153    26-199 (361)
 92 PRK05565 fabG 3-ketoacyl-(acyl  64.9      13 0.00034   18.9   8.0   68    1-70      1-94  (247)
 93 PRK06123 short chain dehydroge  63.8      14 0.00035   18.7   8.3   65    3-69      1-91  (249)
 94 pfam10096 DUF2334 Uncharacteri  63.8      14 0.00035   18.7   6.3   51   14-64     12-73  (238)
 95 PRK00865 glutamate racemase; P  63.7      14 0.00036   18.7   4.7   86    3-90      1-96  (262)
 96 cd00763 Bacterial_PFK Phosphof  62.8      14 0.00037   18.6   5.5  121    5-132     1-178 (317)
 97 cd03028 GRX_PICOT_like Glutare  62.8      14 0.00037   18.6   4.8   49    4-55      7-58  (90)
 98 cd07304 Chorismate_synthase Ch  62.2      15 0.00038   18.6   5.8   95   22-138   132-256 (344)
 99 cd07062 Peptidase_S66_mccF_lik  62.1      15 0.00038   18.6   7.4   67    6-72      2-79  (308)
100 PRK06113 7-alpha-hydroxysteroi  62.1      15 0.00038   18.5   8.6   30    1-32      7-36  (255)
101 PRK05786 fabG 3-ketoacyl-(acyl  61.9      15 0.00038   18.5   7.6   51    1-57      1-51  (238)
102 PRK08085 gluconate 5-dehydroge  61.9      15 0.00038   18.5   8.3   30    1-32      5-34  (254)
103 PRK01231 ppnK inorganic polyph  61.8      15 0.00038   18.5   4.9   89    1-90      1-94  (296)
104 TIGR03568 NeuC_NnaA UDP-N-acet  61.5      15 0.00039   18.5   8.9   85    5-89      1-124 (365)
105 PRK05875 short chain dehydroge  61.5      15 0.00039   18.5   6.5   32    1-34      3-34  (277)
106 PRK10916 ADP-heptose:LPS hepto  61.5      15 0.00039   18.5   5.3   70    9-88    217-286 (348)
107 PRK07326 short chain dehydroge  61.1      16  0.0004   18.4   7.3   68    1-70      1-91  (235)
108 COG0303 MoeA Molybdopterin bio  60.8      16  0.0004   18.4   5.2  111    4-116   176-305 (404)
109 PRK12935 acetoacetyl-CoA reduc  60.5      16  0.0004   18.4   8.3   68    1-70      2-95  (247)
110 PRK06830 diphosphate--fructose  60.1      16 0.00041   18.3   4.9   85   38-124   150-260 (442)
111 cd06317 PBP1_ABC_sugar_binding  59.6      16 0.00042   18.3  14.9   80    7-88      2-87  (275)
112 PRK07479 consensus              59.4      17 0.00042   18.2   8.2   67    1-70      1-93  (252)
113 PRK12743 acetoin dehydrogenase  59.2      17 0.00043   18.2   8.2   55   15-70     35-91  (253)
114 TIGR03590 PseG pseudaminic aci  59.0      17 0.00043   18.2   7.8   26    6-31    173-198 (280)
115 PRK09730 hypothetical protein;  58.7      17 0.00043   18.2   7.8   54   16-70     35-90  (247)
116 PRK13138 consensus              58.6      17 0.00044   18.2  11.0  116   16-156   126-263 (264)
117 PRK10222 L-ascorbate-specific   58.4     7.2 0.00018   20.6   2.1   56   21-89      5-60  (85)
118 COG0695 GrxC Glutaredoxin and   58.2      17 0.00044   18.1   5.3   46    9-55      3-48  (80)
119 PRK07109 short chain dehydroge  58.1      17 0.00045   18.1   8.1   67    3-70      6-96  (338)
120 cd05212 NAD_bind_m-THF_DH_Cycl  57.9      18 0.00045   18.1   4.2   86   18-116    39-128 (140)
121 PRK07478 short chain dehydroge  57.6      18 0.00045   18.1   8.3   67    1-70      2-94  (254)
122 PRK13127 consensus              57.3      18 0.00046   18.0  10.6  120   16-158   123-260 (262)
123 PRK07035 short chain dehydroge  56.7      18 0.00047   18.0   8.2   30    1-32      4-33  (252)
124 PTZ00286 6-phospho-1-fructokin  56.6      18 0.00047   17.9   5.0   89   38-128   166-280 (486)
125 PRK01911 ppnK inorganic polyph  56.5      19 0.00047   17.9   4.1   84    6-91      2-95  (290)
126 PRK11574 hypothetical protein;  56.3      13 0.00033   18.9   3.2   66    3-68      1-75  (196)
127 PRK12937 short chain dehydroge  55.5      19 0.00049   17.8   8.4   68    1-70      1-94  (245)
128 pfam02608 Bmp Basic membrane p  55.4      19 0.00049   17.8   7.4   94    1-96    122-223 (302)
129 COG0743 Dxr 1-deoxy-D-xylulose  55.2      19  0.0005   17.8   7.2  118    6-139     2-121 (385)
130 KOG1208 consensus               55.0      20  0.0005   17.8   6.6   67    2-74     32-129 (314)
131 PRK09134 short chain dehydroge  54.6      20 0.00051   17.7   8.1   65    4-70      8-98  (256)
132 PRK06914 short chain dehydroge  54.3      20 0.00051   17.7   6.3   28    3-32      1-28  (280)
133 PRK06172 short chain dehydroge  54.1      20 0.00052   17.7   8.2   67    1-70      3-95  (253)
134 PRK13936 phosphoheptose isomer  53.5      19 0.00048   17.9   3.6   46   48-93     32-86  (197)
135 PRK08263 short chain dehydroge  53.2      21 0.00053   17.6   6.9   62    3-70      1-88  (275)
136 PRK12463 chorismate synthase;   52.6      21 0.00054   17.5   6.2   94   22-137   147-273 (390)
137 PRK05382 chorismate synthase;   52.3      22 0.00055   17.5   6.3   95   22-138   139-262 (357)
138 PRK00430 fis DNA-binding prote  51.5      12  0.0003   19.2   2.3   23  127-149    74-96  (98)
139 TIGR03206 benzo_BadH 2-hydroxy  51.4      22 0.00057   17.4   7.9   54   16-70     36-91  (250)
140 pfam01264 Chorismate_synt Chor  50.9      23 0.00058   17.4   6.1   95   22-138   131-254 (346)
141 cd01988 Na_H_Antiporter_C The   50.5      23 0.00059   17.3   5.5   62   18-82     56-117 (132)
142 pfam01297 SBP_bac_9 Periplasmi  50.3      23 0.00059   17.3   7.5   24   59-82     47-71  (272)
143 PRK00414 gmhA phosphoheptose i  50.3      18 0.00046   18.0   3.1   33   49-81     34-66  (192)
144 PRK13937 phosphoheptose isomer  50.2      19 0.00049   17.8   3.2   45   47-91     30-83  (192)
145 pfam02514 CobN-Mg_chel CobN/Ma  49.5      24 0.00061   17.2   7.0  103    3-106    67-186 (1064)
146 PRK12938 acetyacetyl-CoA reduc  49.4      24 0.00061   17.2   7.7   67    3-71      1-93  (246)
147 PRK05867 short chain dehydroge  49.3      24 0.00061   17.2   8.3   48    2-55      6-53  (253)
148 PRK07666 fabG 3-ketoacyl-(acyl  49.3      24 0.00061   17.2   8.1   68    2-70      3-94  (238)
149 PRK07707 consensus              48.9      24 0.00062   17.2   7.3   46    5-55      2-47  (239)
150 PRK06227 consensus              48.8      24 0.00062   17.2   8.3   67    1-70      1-93  (256)
151 PRK10936 periplasmic sensory p  48.5      25 0.00063   17.1  12.2   82    6-88     47-131 (340)
152 CHL00174 accD acetyl-CoA carbo  48.5      12  0.0003   19.2   1.9   30   79-109   175-204 (305)
153 cd06286 PBP1_CcpB_like Ligand-  48.4      25 0.00063   17.1  11.1   78    7-88      2-83  (260)
154 PRK08936 glucose-1-dehydrogena  47.6      26 0.00065   17.0   8.2   71    2-73      4-99  (261)
155 PRK01905 DNA-binding protein F  47.5      14 0.00036   18.7   2.2   23  127-149    53-75  (77)
156 TIGR02195 heptsyl_trn_II lipop  47.3      26 0.00066   17.0   3.5   76    8-93    227-303 (361)
157 cd06378 PBP1_iGluR_NMDA_NR2 N-  47.2      26 0.00066   17.0   5.6   47   44-90     46-97  (362)
158 PRK12936 3-ketoacyl-(acyl-carr  46.9      26 0.00067   17.0   7.9   30    1-32      2-31  (245)
159 PRK12827 short chain dehydroge  46.7      26 0.00067   17.0   8.5   68    2-71      3-99  (251)
160 PRK06138 short chain dehydroge  46.6      26 0.00067   16.9   8.0   68    1-70      1-92  (252)
161 pfam01522 Polysacc_deac_1 Poly  46.2      27 0.00068   16.9   6.2   62    3-70      3-66  (123)
162 pfam00532 Peripla_BP_1 family.  45.8      27 0.00069   16.9  13.0   80    6-88      3-87  (281)
163 cd06312 PBP1_ABC_sugar_binding  45.6      27  0.0007   16.8  11.8   82    6-88      1-88  (271)
164 pfam06253 MTTB Trimethylamine   45.4      28  0.0007   16.8   6.5   96   10-113   191-314 (505)
165 TIGR00676 fadh2 5,10-methylene  45.4      28  0.0007   16.8   5.1   77   19-107    61-137 (302)
166 PRK09432 metF 5,10-methylenete  45.3      28 0.00071   16.8   6.6   63    7-69     56-120 (296)
167 pfam00462 Glutaredoxin Glutare  45.2      28 0.00071   16.8   5.3   42   11-54      3-44  (60)
168 KOG4626 consensus               45.1      28 0.00071   16.8   3.7   52   88-148   842-894 (966)
169 PRK09135 pteridine reductase;   45.1      28 0.00071   16.8   7.5   32    1-34      2-33  (249)
170 cd01139 TroA_f Periplasmic bin  45.0      24 0.00062   17.2   3.1   25  138-162   147-171 (342)
171 COG0337 AroB 3-dehydroquinate   44.5      28 0.00073   16.7   8.9  148    5-153    34-207 (360)
172 PRK13307 bifunctional formalde  43.9      29 0.00074   16.7   5.8   61    5-71    251-311 (392)
173 PRK08251 short chain dehydroge  43.7      29 0.00074   16.7   7.8   46    4-55      1-46  (248)
174 cd07025 Peptidase_S66 LD-Carbo  43.5      29 0.00075   16.6   6.1  102    7-111     1-113 (282)
175 TIGR00147 TIGR00147 conserved   43.5      29 0.00075   16.6   7.7   83    9-92     12-99  (316)
176 PRK06077 fabG 3-ketoacyl-(acyl  43.4      30 0.00075   16.6   8.0   56   15-71     36-93  (249)
177 PRK05654 acetyl-CoA carboxylas  43.3      15 0.00039   18.4   1.9   72   44-118    97-205 (288)
178 PRK08213 gluconate 5-dehydroge  43.3      30 0.00076   16.6   8.1   68    2-70      9-100 (259)
179 PRK08642 fabG 3-ketoacyl-(acyl  43.2      30 0.00076   16.6   6.2   32    1-34      2-33  (254)
180 TIGR02456 treS_nterm trehalose  43.1      30 0.00076   16.6   3.7   50   16-65     26-95  (560)
181 COG4026 Uncharacterized protei  43.0      30 0.00076   16.6   6.4   61    2-66      3-65  (290)
182 PRK04176 ribulose-1,5-biphosph  42.9      30 0.00077   16.6   4.9   51   15-66     72-125 (257)
183 PRK06720 hypothetical protein;  42.3      31 0.00078   16.5   7.6   55    1-61     12-66  (169)
184 PRK12746 short chain dehydroge  42.3      31 0.00078   16.5   7.9   29    2-32      3-31  (254)
185 pfam02006 DUF137 Protein of un  42.0      31 0.00079   16.5   5.5   73   19-93     19-100 (178)
186 COG0205 PfkA 6-phosphofructoki  41.8      31  0.0008   16.5   3.6  123    3-131     1-180 (347)
187 cd06313 PBP1_ABC_sugar_binding  41.6      32  0.0008   16.4  10.0   77   12-90      8-88  (272)
188 PRK07097 gluconate 5-dehydroge  41.1      32 0.00082   16.4   8.5   71    1-72      6-100 (265)
189 cd02976 NrdH NrdH-redoxin (Nrd  40.9      32 0.00082   16.4   5.8   43    9-53      2-44  (73)
190 PRK13938 phosphoheptose isomer  40.9      23 0.00059   17.3   2.5   48   35-82     18-68  (196)
191 PRK10073 predicted glycosyl tr  40.7      33 0.00083   16.4   7.2   55    1-55      2-60  (329)
192 PRK13609 diacylglycerol glucos  40.5      33 0.00083   16.3   5.1   33    1-33      1-35  (388)
193 cd01019 ZnuA Zinc binding prot  40.3      33 0.00084   16.3   7.7   31   59-89     52-83  (286)
194 PRK12826 3-ketoacyl-(acyl-carr  40.2      33 0.00084   16.3   8.1   29    2-32      3-31  (253)
195 PRK07074 short chain dehydroge  40.2      33 0.00084   16.3   6.9   26    4-31      1-26  (256)
196 PRK06555 pyrophosphate--fructo  40.1      33 0.00085   16.3   3.8   44   47-91    100-150 (403)
197 pfam05582 Peptidase_U57 YabG p  39.9      33 0.00085   16.3   6.5   43   14-56    112-154 (287)
198 TIGR01278 DPOR_BchB light-inde  39.8      34 0.00085   16.3   3.6   42   19-60    225-268 (562)
199 PRK07041 short chain dehydroge  39.8      34 0.00086   16.3   7.4   49    1-55      3-51  (240)
200 PRK06125 short chain dehydroge  39.6      34 0.00086   16.3   7.8   64    1-69      3-91  (259)
201 cd01541 PBP1_AraR Ligand-bindi  39.5      34 0.00086   16.2  13.7   59    7-67      2-63  (273)
202 PRK10703 DNA-binding transcrip  38.9      35 0.00088   16.2  11.1   83    4-88     59-145 (335)
203 cd04743 NPD_PKS 2-Nitropropane  38.9      35 0.00088   16.2   6.9   50    3-66     81-130 (320)
204 PRK10680 molybdopterin biosynt  38.8      35 0.00088   16.2   5.0   83    3-88    176-276 (411)
205 cd03027 GRX_DEP Glutaredoxin (  38.4      35  0.0009   16.1   6.3   43   10-54      4-46  (73)
206 cd06367 PBP1_iGluR_NMDA N-term  38.2      35  0.0009   16.1   7.7  119    6-124     4-150 (362)
207 cd00363 PFK Phosphofructokinas  38.0      36 0.00091   16.1   5.6   48   43-91     76-130 (338)
208 PRK06197 short chain dehydroge  37.8      36 0.00092   16.1   6.1   30    2-33     13-42  (306)
209 KOG1205 consensus               37.7      36 0.00092   16.1   6.4   68    1-71      8-103 (282)
210 PRK02155 ppnK inorganic polyph  37.6      36 0.00092   16.1   3.3   81    5-90      6-95  (291)
211 cd01452 VWA_26S_proteasome_sub  37.4      37 0.00093   16.0   8.0   72    3-74    106-180 (187)
212 cd01475 vWA_Matrilin VWA_Matri  37.3      37 0.00093   16.0   5.4   50    7-56      6-75  (224)
213 pfam06258 DUF1022 Protein of u  37.3      37 0.00094   16.0   8.2  102    4-119   143-255 (308)
214 pfam01177 Asp_Glu_race Asp/Glu  37.1      37 0.00094   16.0   5.3   78    8-88      2-93  (212)
215 cd00578 L-fuc_L-ara-isomerases  36.8      37 0.00095   16.0   7.9   82    5-87      1-93  (452)
216 cd00764 Eukaryotic_PFK Phospho  36.7      37 0.00096   16.0   6.9   34   42-76     80-113 (762)
217 COG1929 Glycerate kinase [Carb  36.6      38 0.00096   15.9   3.6   77   36-114   263-354 (378)
218 TIGR02482 PFKA_ATP 6-phosphofr  36.5      38 0.00096   15.9   5.7   85    6-93      1-126 (302)
219 PRK07370 enoyl-(acyl carrier p  36.5      38 0.00096   15.9   8.0   71    1-71      3-100 (259)
220 PRK10638 glutaredoxin 3; Provi  36.4      38 0.00097   15.9   5.8   72    6-106     3-74  (83)
221 TIGR02909 spore_YkwD uncharact  36.3      19  0.0005   17.8   1.5   33   24-56     58-95  (129)
222 PRK07775 short chain dehydroge  36.1      38 0.00097   15.9   8.0   47    3-55      8-54  (275)
223 PRK08063 enoyl-(acyl carrier p  36.1      38 0.00098   15.9   8.2   53   17-70     39-93  (250)
224 PRK10116 universal stress prot  35.8      39 0.00099   15.9   4.5   70   19-92     61-141 (142)
225 COG2008 GLY1 Threonine aldolas  35.7      39 0.00099   15.9   4.4  143    8-161   102-269 (342)
226 pfam03358 FMN_red NADPH-depend  35.5      39   0.001   15.8   8.1   53    5-57      1-68  (147)
227 cd01540 PBP1_arabinose_binding  35.5      39   0.001   15.8   7.7   81    6-89      1-86  (289)
228 PRK13111 trpA tryptophan synth  35.5      39   0.001   15.8  10.7  122   16-157   121-255 (256)
229 TIGR02855 spore_yabG sporulati  35.4      39   0.001   15.8   6.1   50   14-66    120-170 (292)
230 cd01080 NAD_bind_m-THF_DH_Cycl  35.4      39   0.001   15.8   3.4   48   18-74     55-102 (168)
231 pfam00239 Resolvase Resolvase,  34.8      40   0.001   15.8   4.4   56   10-65     38-93  (139)
232 cd06294 PBP1_ycjW_transcriptio  34.8      40   0.001   15.8  10.8   78    7-88      2-89  (270)
233 TIGR02974 phageshock_pspF psp   34.8      17 0.00044   18.2   1.0   20  129-148   330-349 (349)
234 PRK08219 short chain dehydroge  34.7      40   0.001   15.8   5.6   62    3-71      1-82  (226)
235 PRK10653 D-ribose transporter   34.4      41   0.001   15.7  14.3   84    4-89     26-114 (295)
236 pfam02954 HTH_8 Bacterial regu  34.1      23 0.00058   17.3   1.5   20  129-148    23-42  (42)
237 PRK06194 hypothetical protein;  34.1      41   0.001   15.7   8.2   66    2-70      3-94  (301)
238 cd05006 SIS_GmhA Phosphoheptos  33.8      42  0.0011   15.7   3.3   37   47-83     21-57  (177)
239 cd01542 PBP1_TreR_like Ligand-  33.7      42  0.0011   15.7  10.6   79    7-88      2-84  (259)
240 cd01078 NAD_bind_H4MPT_DH NADP  33.5      42  0.0011   15.6   6.9  107    3-118    26-159 (194)
241 PRK08643 acetoin reductase; Va  33.4      42  0.0011   15.6   8.3   62    6-70      3-90  (256)
242 COG3002 Uncharacterized protei  33.2      43  0.0011   15.6   3.2   29  119-150   590-618 (880)
243 COG1879 RbsB ABC-type sugar tr  33.2      43  0.0011   15.6   9.2   87    5-91     34-125 (322)
244 cd06282 PBP1_GntR_like_2 Ligan  33.1      43  0.0011   15.6   9.5   80    7-88      2-85  (266)
245 TIGR02764 spore_ybaN_pdaB poly  33.0      43  0.0011   15.6   4.3   51    4-54      5-61  (198)
246 COG1979 Uncharacterized oxidor  32.8      43  0.0011   15.6   6.7   69    4-74     29-100 (384)
247 cd01537 PBP1_Repressors_Sugar_  32.8      43  0.0011   15.6   9.9   81    6-88      1-85  (264)
248 PRK06198 short chain dehydroge  32.8      43  0.0011   15.6   8.3   54    3-61      4-57  (268)
249 PRK06182 short chain dehydroge  32.7      43  0.0011   15.5   5.4   67    3-71      1-86  (273)
250 cd03418 GRX_GRXb_1_3_like Glut  32.6      43  0.0011   15.5   6.0   71   10-106     3-73  (75)
251 PRK07856 short chain dehydroge  32.5      44  0.0011   15.5   7.6   68    1-70      4-87  (254)
252 PRK06196 oxidoreductase; Provi  32.4      44  0.0011   15.5   6.7   64    1-70     22-110 (316)
253 COG1951 TtdA Tartrate dehydrat  32.3      40   0.001   15.7   2.6   87   58-153   137-229 (297)
254 PRK08339 short chain dehydroge  32.2      44  0.0011   15.5   7.9   29    1-31      4-32  (263)
255 TIGR00875 talC transaldolase,   32.2      44  0.0011   15.5   4.2   38   15-53    142-179 (216)
256 cd03029 GRX_hybridPRX5 Glutare  32.2      44  0.0011   15.5   4.4   33    9-41      3-35  (72)
257 pfam00763 THF_DHG_CYH Tetrahyd  31.8      45  0.0011   15.5   6.8   62    3-64     28-92  (117)
258 pfam05681 Fumerase Fumarate hy  31.8      45  0.0011   15.5   3.6   71   58-136   127-200 (271)
259 PRK10886 DnaA initiator-associ  31.7      45  0.0011   15.4   3.5   42   50-91     32-82  (196)
260 PRK06139 short chain dehydroge  31.6      45  0.0012   15.4   7.6   67    3-70      4-94  (324)
261 COG4213 XylF ABC-type xylose t  31.5      45  0.0012   15.4   5.2   58   34-91     56-115 (341)
262 PRK12384 sorbitol-6-phosphate   31.3      46  0.0012   15.4   7.9   63    6-70      3-92  (259)
263 COG0532 InfB Translation initi  31.3      46  0.0012   15.4   7.1   83    7-105    83-165 (509)
264 PRK13761 hypothetical protein;  31.0      46  0.0012   15.4   5.8   72   19-93     82-161 (248)
265 PRK05866 short chain dehydroge  30.3      47  0.0012   15.3   8.1   66    2-70     37-128 (290)
266 cd01714 ETF_beta The electron   30.3      47  0.0012   15.3   4.7   81    7-91     56-144 (202)
267 PRK05854 short chain dehydroge  30.1      48  0.0012   15.3   6.8   45    2-52     11-55  (314)
268 PRK08594 enoyl-(acyl carrier p  30.1      48  0.0012   15.3   6.8   34    1-34      2-35  (256)
269 cd03768 SR_ResInv Serine Recom  30.0      48  0.0012   15.3   4.6   56   10-65     35-90  (126)
270 PRK08997 isocitrate dehydrogen  29.9      48  0.0012   15.2   4.9   36    3-38      1-36  (334)
271 PRK12825 fabG 3-ketoacyl-(acyl  29.8      48  0.0012   15.2   8.2   67    2-71      4-97  (250)
272 TIGR02663 nifX nitrogen fixati  29.7      49  0.0012   15.2   3.2   49   58-113    67-118 (125)
273 cd03055 GST_N_Omega GST_N fami  29.6      49  0.0012   15.2   4.0   44    7-51     18-61  (89)
274 PRK03372 ppnK inorganic polyph  29.5      49  0.0012   15.2   4.6   89    1-90      1-101 (303)
275 TIGR02477 PFKA_PPi diphosphate  29.4      49  0.0013   15.2   3.7   50   42-91    151-206 (566)
276 PRK06180 short chain dehydroge  29.0      50  0.0013   15.1   6.8   65    4-70      3-89  (277)
277 PRK05993 short chain dehydroge  28.9      50  0.0013   15.1   5.7   68    1-71      1-88  (277)
278 PRK06179 short chain dehydroge  28.5      51  0.0013   15.1   6.7   67    1-70      1-84  (270)
279 pfam00106 adh_short short chai  28.5      51  0.0013   15.1   7.7   65    6-71     26-92  (167)
280 cd02066 GRX_family Glutaredoxi  28.3      51  0.0013   15.1   6.1   69   10-105     3-71  (72)
281 PRK07062 short chain dehydroge  28.1      52  0.0013   15.1   8.3   68    1-70      4-98  (265)
282 PRK08220 2,3-dihydroxybenzoate  28.1      52  0.0013   15.0   7.9   68    1-70      4-88  (253)
283 COG1635 THI4 Ribulose 1,5-bisp  27.7      52  0.0013   15.0   3.2   47   17-64     79-128 (262)
284 TIGR01059 gyrB DNA gyrase, B s  27.7      36 0.00092   16.1   1.7   32   34-66    512-546 (818)
285 cd05566 PTS_IIB_galactitol PTS  27.7      53  0.0013   15.0   7.2   68    5-89      1-70  (89)
286 cd01917 ACS_2 Acetyl-CoA synth  27.7      53  0.0013   15.0   4.5  107   25-157   113-226 (287)
287 PRK07677 short chain dehydroge  27.7      53  0.0013   15.0   8.0   54   16-70     36-91  (254)
288 cd03061 GST_N_CLIC GST_N famil  27.5      53  0.0014   15.0   4.2   39   15-53     20-58  (91)
289 cd01473 vWA_CTRP CTRP for  CS   27.2      54  0.0014   15.0   5.8   15  142-156   176-190 (192)
290 cd03047 GST_N_2 GST_N family,   27.2      54  0.0014   14.9   3.4   38   10-48      3-44  (73)
291 cd06324 PBP1_ABC_sugar_binding  27.2      54  0.0014   14.9   8.3   81    7-90      2-90  (305)
292 PRK05557 fabG 3-ketoacyl-(acyl  27.0      54  0.0014   14.9   8.3   67    1-70      1-94  (248)
293 cd06502 TA_like Low-specificit  26.6      55  0.0014   14.9   5.6  137   14-161   104-265 (338)
294 pfam04743 consensus             26.6      29 0.00074   16.7   1.0   43  105-149    37-79  (160)
295 COG2901 Fis Factor for inversi  26.6      49  0.0012   15.2   2.2   23  127-149    74-96  (98)
296 pfam00365 PFK Phosphofructokin  26.6      55  0.0014   14.9   5.5   48   43-91     76-125 (279)
297 KOG3984 consensus               26.5      37 0.00093   16.0   1.5   31    3-33     23-54  (286)
298 cd00537 MTHFR Methylenetetrahy  26.5      55  0.0014   14.9   6.8   63    7-69     32-96  (274)
299 PRK06114 short chain dehydroge  26.2      56  0.0014   14.8   8.2   68    2-72     13-107 (262)
300 TIGR00292 TIGR00292 thiazole b  26.2      34 0.00087   16.2   1.3   15   21-35     76-90  (283)
301 PRK05450 3-deoxy-manno-octulos  26.2      56  0.0014   14.8   3.9   54   21-74     53-106 (248)
302 pfam02882 THF_DHG_CYH_C Tetrah  26.1      56  0.0014   14.8   5.5   99    6-116    37-145 (159)
303 PRK13117 consensus              26.1      56  0.0014   14.8   7.0   53   16-71    130-184 (268)
304 cd06277 PBP1_LacI_like_1 Ligan  25.9      57  0.0014   14.8  12.9  125    7-155     2-147 (268)
305 PRK07533 enoyl-(acyl carrier p  25.9      57  0.0014   14.8   8.0   70    1-70      2-95  (254)
306 PRK06181 short chain dehydroge  25.9      57  0.0014   14.8   7.9   56   15-71     33-90  (263)
307 PRK09271 flavodoxin; Provision  25.7      57  0.0015   14.8   7.1   52    6-57      2-80  (160)
308 PRK08945 short chain dehydroge  25.6      57  0.0015   14.8   6.3   48    4-57     12-59  (245)
309 cd06314 PBP1_tmGBP Periplasmic  25.5      57  0.0015   14.8  11.1  129    7-154     2-148 (271)
310 PRK07024 short chain dehydroge  25.5      58  0.0015   14.7   6.5   65    4-70      1-88  (256)
311 PRK01185 ppnK inorganic polyph  25.4      48  0.0012   15.3   2.0   79    6-91      2-82  (272)
312 TIGR01457 HAD-SF-IIA-hyp2 HAD-  25.4      57  0.0014   14.8   2.3   57   81-140   143-199 (251)
313 TIGR03260 met_CoM_red_D methyl  25.4      58  0.0015   14.7   2.7   55    3-57     69-124 (150)
314 TIGR01212 TIGR01212 radical SA  25.4      58  0.0015   14.7   2.7   34   31-64    107-143 (307)
315 LOAD_USPA consensus             25.4      58  0.0015   14.7   5.4   58   19-80     61-118 (135)
316 cd06274 PBP1_FruR Ligand bindi  25.3      58  0.0015   14.7  11.1   77    7-88      2-84  (264)
317 TIGR03470 HpnH hopanoid biosyn  25.2      58  0.0015   14.7   7.8   68   19-91     60-130 (318)
318 COG1744 Med Uncharacterized AB  25.1      58  0.0015   14.7   6.5   92    3-95    160-256 (345)
319 TIGR03567 FMN_reduc_SsuE FMN r  25.0      59  0.0015   14.7  10.8  135    6-154     1-170 (171)
320 cd01471 vWA_micronemal_protein  24.9      59  0.0015   14.7   5.5   16   18-33     20-36  (186)
321 cd03058 GST_N_Tau GST_N family  24.9      59  0.0015   14.7   4.0   36   15-50      7-42  (74)
322 PRK08415 enoyl-(acyl carrier p  24.7      59  0.0015   14.7   7.0   70    1-70      1-94  (274)
323 TIGR01963 PHB_DH 3-hydroxybuty  24.6      60  0.0015   14.6   7.5   62    5-70      1-62  (258)
324 PTZ00249 variable surface prot  24.5      37 0.00096   16.0   1.3   41   67-116   424-464 (516)
325 cd00293 USP_Like Usp: Universa  24.4      60  0.0015   14.6   4.7   40   30-73     68-107 (130)
326 cd02520 Glucosylceramide_synth  24.3      60  0.0015   14.6   6.5  108    5-115     1-120 (196)
327 PRK13140 consensus              24.1      61  0.0016   14.6   5.2   55   15-72    125-182 (257)
328 COG1419 FlhF Flagellar GTP-bin  24.0      61  0.0016   14.6   7.2  131    2-139   231-399 (407)
329 cd00887 MoeA MoeA family. Memb  23.9      62  0.0016   14.6   4.5   76    3-80    167-259 (394)
330 PRK12331 oxaloacetate decarbox  23.7      62  0.0016   14.5   8.0  150    6-156   111-277 (463)
331 PRK06703 flavodoxin; Provision  23.5      63  0.0016   14.5   4.6  126    5-159     2-150 (151)
332 PRK12429 3-hydroxybutyrate deh  23.5      63  0.0016   14.5   8.0   66    4-70      3-92  (258)
333 PRK08278 short chain dehydroge  23.4      63  0.0016   14.5   8.4   68    1-70      2-101 (273)
334 TIGR00303 TIGR00303 conserved   23.3      63  0.0016   14.5   2.4   73   23-106   161-255 (350)
335 cd06448 L-Ser-dehyd Serine deh  23.3      63  0.0016   14.5   3.3  103   38-147   136-254 (316)
336 pfam09752 DUF2048 Uncharacteri  23.2      63  0.0016   14.5   4.1  113    5-133    91-231 (337)
337 PRK05876 short chain dehydroge  23.2      63  0.0016   14.5   7.0   69    3-72      4-96  (275)
338 PRK03378 ppnK inorganic polyph  23.1      64  0.0016   14.5   3.4   83    5-90      6-95  (292)
339 PRK13305 sgbH 3-keto-L-gulonat  23.1      64  0.0016   14.5  10.3   66    5-76     81-146 (220)
340 cd04730 NPD_like 2-Nitropropan  22.8      65  0.0016   14.4   7.2   50    4-66     80-129 (236)
341 cd01481 vWA_collagen_alpha3-VI  22.8      65  0.0016   14.4   5.5   18   39-56     56-73  (165)
342 TIGR00600 rad2 DNA excision re  22.8      56  0.0014   14.8   1.9   18   19-36    859-876 (1127)
343 PRK07806 short chain dehydroge  22.8      65  0.0017   14.4   8.4   29    2-32      3-31  (248)
344 TIGR00511 aIF-2BII_fam transla  22.6      62  0.0016   14.6   2.1   39   20-69    156-194 (303)
345 cd03060 GST_N_Omega_like GST_N  22.3      66  0.0017   14.4   3.9   37   15-51      7-43  (71)
346 TIGR02539 SepCysS Sep-tRNA:Cys  22.3      66  0.0017   14.4   3.9  129    4-155   148-287 (381)
347 PRK04759 consensus              22.2      66  0.0017   14.3   3.6   86    1-90      1-96  (294)
348 PRK05333 NAD-dependent deacety  22.1      67  0.0017   14.3   3.0   24   46-72     10-33  (285)
349 PRK12748 3-ketoacyl-(acyl-carr  21.9      67  0.0017   14.3   7.9   71    1-71      1-107 (257)
350 cd06280 PBP1_LacI_like_4 Ligan  21.9      67  0.0017   14.3  12.8  127    7-155     2-143 (263)
351 PRK08285 cobH precorrin-8X met  21.9      67  0.0017   14.3   4.2   46   83-133   155-200 (208)
352 cd00644 HMG-CoA_reductase_clas  21.7      41   0.001   15.7   1.0   40  100-142   305-345 (417)
353 PRK11889 flhF flagellar biosyn  21.3      69  0.0018   14.2   7.8   66    5-75    270-337 (436)
354 COG0589 UspA Universal stress   21.3      69  0.0018   14.2   7.7   72   17-91     73-153 (154)
355 PRK10329 glutaredoxin-like pro  21.3      69  0.0018   14.2   5.7   44    9-55      3-46  (81)
356 PRK12744 short chain dehydroge  20.9      71  0.0018   14.2   8.6   67    2-71      5-101 (257)
357 PRK06505 enoyl-(acyl carrier p  20.8      71  0.0018   14.2   7.5   31    3-33      5-35  (271)
358 cd06298 PBP1_CcpA_like Ligand-  20.7      71  0.0018   14.1  10.7   78    7-88      2-84  (268)
359 TIGR02181 GRX_bact glutaredoxi  20.6      72  0.0018   14.1   4.0   52   12-65      4-59  (82)
360 cd04336 YeaK YeaK is an unchar  20.5      72  0.0018   14.1   3.8   41   21-61      2-42  (153)
361 smart00493 TOPRIM topoisomeras  20.4      72  0.0018   14.1   4.9   56    6-68      1-56  (76)
362 PRK06947 glucose-1-dehydrogena  20.3      72  0.0018   14.1   8.4   54   16-70     40-95  (252)
363 KOG1478 consensus               20.1      73  0.0019   14.1   6.1   53    3-56      1-53  (341)
364 TIGR01316 gltA glutamate synth  20.1      73  0.0019   14.1   4.8   49   16-70    191-242 (462)
365 pfam02350 Epimerase_2 UDP-N-ac  20.0      74  0.0019   14.1   5.3   80    6-88     11-97  (346)

No 1  
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031   Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=100.00  E-value=0  Score=450.22  Aligned_cols=158  Identities=58%  Similarity=0.928  Sum_probs=156.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCHHHHHHHCCCCE
Q ss_conf             999958816989999999999980998265453010387999988987653598-2999972676685113465224203
Q gi|254780157|r    7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF-KLIIAGAGGAAHLPGMIAAMTSLPV   85 (165)
Q Consensus         7 V~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~-~viIa~AG~aaaLpgvva~~t~~PV   85 (165)
                      |+|||||+|||++|+++.++|++|||+||++|.||||||+++++|+++++++|+ +||||+||+||||||+||++|++||
T Consensus         1 V~iIMGS~SD~~~m~~a~~~L~~fgi~~e~~V~SAHRTP~~~~~ya~~a~~~G~P~ViIAgAGgaAHLPGmvAa~T~~PV   80 (159)
T TIGR01162         1 VGIIMGSDSDLETMKKAAEILEEFGIPYELRVVSAHRTPELMFEYAKEAEERGIPKVIIAGAGGAAHLPGMVAALTTLPV   80 (159)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCE
T ss_conf             96853672547899999999985599667898606778088999999998678997998403511334010011478775


Q ss_pred             EEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6612577666750016998403569862044316753122899999997069999999999999999999984054067
Q gi|254780157|r   86 LGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDIP  164 (165)
Q Consensus        86 IgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v~~~~~~l~  164 (165)
                      ||||+.+..++|+|||||+||||+|+||+||++|++||.||||||+||||++|++|++||++||++++++|.+++++|+
T Consensus        81 IGVPv~~~~l~G~DSLlSiVQMP~GvPVATvaig~aGA~NAAllAa~ILa~~~~~l~~kl~~~~~~~~~~V~~~~~~l~  159 (159)
T TIGR01162        81 IGVPVPSKALSGLDSLLSIVQMPAGVPVATVAIGNAGAKNAALLAAQILAIKDPELAEKLKEYRENQKEKVLKKNEELE  159 (159)
T ss_pred             EECCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             5034773424521354454307589746530037132788999999997268988999999999999999873010259


No 2  
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=394.20  Aligned_cols=159  Identities=58%  Similarity=0.952  Sum_probs=154.7

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             87499995881698999999999998099826545301038799998898765359829999726766851134652242
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL   83 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~   83 (165)
                      .|+|+|||||+|||++|++++++|++|||+|+.+|.||||||+++.+|+++++++|++|||++||++|||||++|++|++
T Consensus         2 ~~~V~IIMGS~SD~~~mk~Aa~~L~~fgv~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~l   81 (162)
T COG0041           2 PPKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPL   81 (162)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCHHHHHCCCC
T ss_conf             85189995570239999999999998499759999844679899999999998789759996575111062026555879


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             03661257766675001699840356986204431675312289999999706999999999999999999998405406
Q gi|254780157|r   84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI  163 (165)
Q Consensus        84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v~~~~~~l  163 (165)
                      ||||||+.+..|+|+|||||++|||+|+||+|++||.+  .|||++|+|||+++|+++++||.+||++++++|.++++++
T Consensus        82 PViGVPv~s~~L~GlDSL~SiVQMP~GiPVaTvaIg~a--~NAallAa~iLa~~d~~l~~kl~~~r~~~~~~V~~~~~~~  159 (162)
T COG0041          82 PVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNA--ANAALLAAQILAIKDPELAEKLAEFREAQTEEVLEDDEEL  159 (162)
T ss_pred             CEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             86741476233466487788721899973688760613--3189999999837998899999999999999998470644


Q ss_pred             C
Q ss_conf             7
Q gi|254780157|r  164 P  164 (165)
Q Consensus       164 ~  164 (165)
                      +
T Consensus       160 ~  160 (162)
T COG0041         160 E  160 (162)
T ss_pred             H
T ss_conf             1


No 3  
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=100.00  E-value=0  Score=389.59  Aligned_cols=150  Identities=61%  Similarity=0.989  Sum_probs=146.8

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf             74999958816989999999999980998265453010387999988987653598299997267668511346522420
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLP   84 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~P   84 (165)
                      |||+|+|||+||+++|+++.++|++|||+|+++|+||||+|+++.+|.+++++++++|||++|||++|||||++++|++|
T Consensus         1 ~~V~IimGS~SD~~~~~~a~~~L~~~gi~~e~~V~SAHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpGvvA~~T~~P   80 (150)
T pfam00731         1 PKVGIIMGSDSDLPTMEKAAKVLKEFGIPYEVRVVSAHRTPERLFEYAKEAEARGIKVIIAGAGGAAHLPGMVAALTTLP   80 (150)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCC
T ss_conf             94999957673099999999999985997698676510387899999999997597399995684201200017647996


Q ss_pred             EEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             366125776667500169984035698620443167531228999999970699999999999999999999
Q gi|254780157|r   85 VLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISI  156 (165)
Q Consensus        85 VIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v  156 (165)
                      |||||+++++++|+|+|||++|||+|+||+||++|  |++|||++|+|||+++|+++++||++||+++++++
T Consensus        81 VIgVP~~~~~l~G~dsllS~vqMP~Gvpvatv~i~--~~~NAallA~~Il~~~d~~~~~kl~~~r~~~~~~v  150 (150)
T pfam00731        81 VIGVPVKSKALGGLDSLLSIVQMPSGIPVATVAIG--GAKNAALLAAQILALKDPELAEKLEAYREELAEEV  150 (150)
T ss_pred             EEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             68577787777545459999619999976898658--66669999999983699999999999999976259


No 4  
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.95  E-value=4.8e-28  Score=203.12  Aligned_cols=123  Identities=30%  Similarity=0.497  Sum_probs=108.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCC----EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC
Q ss_conf             4999958816989999999999980998----265453010387999988987653598299997267668511346522
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGID----YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT   81 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~----~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t   81 (165)
                      +|+|+..++||+|++|||..+++.+|++    |++.|++.||....+.+.    +.++.+++|++|||+++||+||++++
T Consensus       119 ~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~----~~~~~~~lIVvAGMEGaLPsvvagLv  194 (254)
T COG1691         119 KVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRL----KIEDADVLIVVAGMEGALPSVVAGLV  194 (254)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHH----HHHCCCEEEEECCCCCCHHHHHHHCC
T ss_conf             69999457877626889999999829567899961230277651588988----75079869998366663078887513


Q ss_pred             CCCEEEECCCCCC---CCCCCCHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4203661257766---675001699840-356986204431675312289999999706
Q gi|254780157|r   82 SLPVLGVPIISQT---LGGIDSLLSIVQ-MPAGVPVGTMAIGQSGAINASLLAVAILAL  136 (165)
Q Consensus        82 ~~PVIgVP~~~~~---~~G~dallS~vq-MP~Gvpvatv~vg~~~~~NAal~A~~Il~~  136 (165)
                      +.||||||++.||   ++|+.+||+|+| |-+|+.|    ||+||+|+||.+|+||+-.
T Consensus       195 D~PVIavPTsVGYG~g~gGiaaLltMLqSCspGv~V----VNIdNGfGAa~~A~~I~r~  249 (254)
T COG1691         195 DVPVIAVPTSVGYGAGGGGIAALLTMLQSCSPGVGV----VNIDNGFGAAVLAVQILRR  249 (254)
T ss_pred             CCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHHHHH
T ss_conf             787672455643376876588999999735887189----9816745799999999999


No 5  
>KOG2835 consensus
Probab=99.92  E-value=4e-26  Score=190.66  Aligned_cols=158  Identities=34%  Similarity=0.460  Sum_probs=152.8

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             88749999588169899999999999809982654530103879999889876535982999972676685113465224
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      .+|.+.++|++++|.++|...+.+++.|+++++..+.++||+|.++..|...+..+++.++|++||.++|+|+.|++.+.
T Consensus       207 v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~  286 (373)
T KOG2835         207 VIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFE  286 (373)
T ss_pred             CCCHHHEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCC
T ss_conf             35312347700677664430067845657775115888403770466665402566618999516777777256776463


Q ss_pred             CCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             20366125776667500169984035698620443167531228999999970699999999999999999999840540
Q gi|254780157|r   83 LPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKD  162 (165)
Q Consensus        83 ~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v~~~~~~  162 (165)
                      .|  |||.....++|.|++||+||||.|+|++|+++  .++.|||++|++||+++|+.|+.|+..|+.+++..+.+.+++
T Consensus       287 ~~--gvp~~~~~~dg~~~~l~~V~~~~~~~~~~v~v--~~p~~aa~~aar~l~~~~~~i~gk~~~~~l~~~~~~~~~~~K  362 (373)
T KOG2835         287 RP--GVPVVFVAVDGRDNLLSIVQMPNGVPVATVAV--NNPENAALLAARILGLSNEMITGKMRSYQLNQQIIILNKDRK  362 (373)
T ss_pred             CC--CCCEEEEECCCCCCCCCCEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             66--85233211155334445033367764455466--897899999999997531676887887411222788877656


Q ss_pred             CC
Q ss_conf             67
Q gi|254780157|r  163 IP  164 (165)
Q Consensus       163 l~  164 (165)
                      |+
T Consensus       363 le  364 (373)
T KOG2835         363 LE  364 (373)
T ss_pred             HH
T ss_conf             76


No 6  
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=97.41  E-value=0.0016  Score=44.24  Aligned_cols=90  Identities=19%  Similarity=0.207  Sum_probs=74.3

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-HHHHHHHCCC
Q ss_conf             749999588169899999999999809982654530103879999889876535982999972676685-1134652242
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL-PGMIAAMTSL   83 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL-pgvva~~t~~   83 (165)
                      .|+.|+.|..+=....++....|++.||++.....+..-+.+.+.+..+.+...+++++|++-|++.-- +-.++-....
T Consensus        30 ~r~liVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~pt~~~v~~~~~~~~~~~~D~IiavGGGS~iD~AKaia~~~~~  109 (366)
T PRK09423         30 KRALLIADEFVLGIVGDTVEASLKDAGLDVVFEVFNGECSDNEIDRLVAIAEENGCDVIIGIGGGKTLDTAKAVADYLGV  109 (366)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             95899989528998999999999867986999733899999999999999986499989993783887779999998289


Q ss_pred             CEEEECCCCCC
Q ss_conf             03661257766
Q gi|254780157|r   84 PVLGVPIISQT   94 (165)
Q Consensus        84 PVIgVP~~~~~   94 (165)
                      |+|.||+..+.
T Consensus       110 P~i~IPTtAgT  120 (366)
T PRK09423        110 PVVIVPTIAST  120 (366)
T ss_pred             CEEEECCCCCC
T ss_conf             97995686667


No 7  
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=97.11  E-value=0.005  Score=41.08  Aligned_cols=90  Identities=24%  Similarity=0.329  Sum_probs=71.2

Q ss_pred             CEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC-
Q ss_conf             7499995881-698999999999998099826545-3010387999988987653598299997267668511346522-
Q gi|254780157|r    5 PPVAIIMGSQ-SDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT-   81 (165)
Q Consensus         5 pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t-   81 (165)
                      .||.|+.|.. ......++..+.|++.|+++.++- ...|-+.+.+.+.++.+...+++++|++-|++..-.+=..+.. 
T Consensus        23 ~r~llVt~~~~~~~g~~~~l~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~  102 (312)
T pfam00465        23 ARALIVTDPSLKKLGLLDRVLDSLEEAGIEVVVFDGVEPNPTLEEVDEAAAAAREEGADVIIAVGGGSVIDTAKAIALLL  102 (312)
T ss_pred             CEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf             97999989585667639999999997499499985827999999999999999964998999808976124999999997


Q ss_pred             ------------------CCCEEEECCCCCC
Q ss_conf             ------------------4203661257766
Q gi|254780157|r   82 ------------------SLPVLGVPIISQT   94 (165)
Q Consensus        82 ------------------~~PVIgVP~~~~~   94 (165)
                                        ..|+|.||+-.+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~P~i~IPTTagT  133 (312)
T pfam00465       103 TNPGDVWDYLGGKKLTKPALPLIAIPTTAGT  133 (312)
T ss_pred             CCCCCHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf             1999889985576555678988997178667


No 8  
>PRK13054 lipid kinase; Reviewed
Probab=96.76  E-value=0.021  Score=37.07  Aligned_cols=88  Identities=19%  Similarity=0.322  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             99887499995881698999999999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      |+|+.-..|+=|..+--...+++...|++.|++++++....   +....++++++..++++.+| ++|+.+.+.-|+.++
T Consensus         1 ~~~~k~lli~N~~~~g~~~~~~~~~~l~~~~~~~~~~~T~~---~gda~~la~~a~~~g~d~vv-~~GGDGTv~evvngl   76 (299)
T PRK13054          1 MEFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWE---KGDAARYVEEALALGVATVI-AGGGDGTLNEVATAL   76 (299)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCC---CCHHHHHHHHHHHCCCCEEE-EECCCHHHHHHHHHH
T ss_conf             99856999981700050689999999997698799996489---74599999999877998999-987722999999999


Q ss_pred             CC-----CCEEEECCCC
Q ss_conf             24-----2036612577
Q gi|254780157|r   81 TS-----LPVLGVPIIS   92 (165)
Q Consensus        81 t~-----~PVIgVP~~~   92 (165)
                      ..     .|.+|+=|.+
T Consensus        77 ~~~~~~~~~~LgiiP~G   93 (299)
T PRK13054         77 AQLEGDDRPSLGILPLG   93 (299)
T ss_pred             HHCCCCCCCEEEEECCC
T ss_conf             74788778639996387


No 9  
>PRK13337 putative lipid kinase; Reviewed
Probab=96.64  E-value=0.03  Score=35.97  Aligned_cols=86  Identities=23%  Similarity=0.322  Sum_probs=65.8

Q ss_pred             CCCEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH
Q ss_conf             887499995----8816989999999999980998265453010387999988987653598299997267668511346
Q gi|254780157|r    3 IAPPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA   78 (165)
Q Consensus         3 ~~pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva   78 (165)
                      |.+|+.+|.    |+..-....+++.+.|++.|+++++...   ..+....++++.+..++++.+| ++|+.+.+--|+.
T Consensus         1 mmkr~~~I~NP~sG~g~~~~~~~~i~~~l~~~g~~~~~~~T---~~~g~a~~~a~~~~~~~~d~vv-~~GGDGTv~evvn   76 (305)
T PRK13337          1 MMKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHAT---TGPGDATLAARQAAERNFDLVI-AAGGDGTLNEVVN   76 (305)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE---CCHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHH
T ss_conf             98459999997568864677899999999987996999982---7802899999998777999899-9957628999999


Q ss_pred             HHCC---CCEEEECCCC
Q ss_conf             5224---2036612577
Q gi|254780157|r   79 AMTS---LPVLGVPIIS   92 (165)
Q Consensus        79 ~~t~---~PVIgVP~~~   92 (165)
                      ++..   .|.+|+=|.+
T Consensus        77 gl~~~~~~~~lgiiP~G   93 (305)
T PRK13337         77 GLAEKENRPKLGIIPVG   93 (305)
T ss_pred             HHHCCCCCCEEEEEECC
T ss_conf             98558998628997078


No 10 
>PRK13055 putative lipid kinase; Reviewed
Probab=96.26  E-value=0.077  Score=33.36  Aligned_cols=87  Identities=22%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             CCCEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH
Q ss_conf             887499995----8816989999999999980998265453010387999988987653598299997267668511346
Q gi|254780157|r    3 IAPPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA   78 (165)
Q Consensus         3 ~~pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva   78 (165)
                      |+.|+.+|.    |..+-.....++...|++.|+++.+.-...  -++...++.+.+..++++++| ++|+.+.+.-|+.
T Consensus         1 MmKr~~lIvNP~SG~g~~~~~~~~i~~~L~~~g~e~~~~~tt~--~~~~a~~~a~~a~~~g~d~Iv-a~GGDGTinevvn   77 (334)
T PRK13055          1 MQKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTP--EPNSAKNEARRAAKAGFDLII-AAGGDGTINEVVN   77 (334)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEC--CCCHHHHHHHHHHHCCCCEEE-EECCCCHHHHHHH
T ss_conf             9706999999877897578899999999998698599999441--785799999987657998999-9877608999999


Q ss_pred             HHC---CCCEEEECCCC
Q ss_conf             522---42036612577
Q gi|254780157|r   79 AMT---SLPVLGVPIIS   92 (165)
Q Consensus        79 ~~t---~~PVIgVP~~~   92 (165)
                      ++.   ..|.+|+=|.+
T Consensus        78 gl~~~~~~~~LgiIP~G   94 (334)
T PRK13055         78 GIAPLEKRPKMAIIPAG   94 (334)
T ss_pred             HHHCCCCCCEEEEEECC
T ss_conf             87346999718998077


No 11 
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=96.16  E-value=0.045  Score=34.86  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=68.0

Q ss_pred             CEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH---
Q ss_conf             7499995881-69899999999999809982654-530103879999889876535982999972676685113465---
Q gi|254780157|r    5 PPVAIIMGSQ-SDWKIMKYAADMLDTLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA---   79 (165)
Q Consensus         5 pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~---   79 (165)
                      .++.|+.|+. ......++..+.|++.||++.++ =...+-+.+.+.+-++.+.+.+++.+|++-|+|.--..=..+   
T Consensus        30 k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r~~~~D~IiavGGGSviD~AKaia~~~  109 (381)
T PRK10624         30 HKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQASGADYLIAIGGGSPQDTCKAIGIIS  109 (381)
T ss_pred             CEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             87999969654556369999999987698399988925898999999999999864999899808940888999999997


Q ss_pred             ------------------HCCCCEEEECCCCCC
Q ss_conf             ------------------224203661257766
Q gi|254780157|r   80 ------------------MTSLPVLGVPIISQT   94 (165)
Q Consensus        80 ------------------~t~~PVIgVP~~~~~   94 (165)
                                        .-.+|+|.+|+-.|+
T Consensus       110 ~~~~~~~~~~~~g~~~~~~~~lP~iaIPTTaGT  142 (381)
T PRK10624        110 NNPEFADVRSLEGLAPTKKPSVPIIAIPTTAGT  142 (381)
T ss_pred             CCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCC
T ss_conf             098511478752656555788888997489767


No 12 
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=96.03  E-value=0.06  Score=34.05  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             CEEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH---
Q ss_conf             749999588-169899999999999809982654-530103879999889876535982999972676685113465---
Q gi|254780157|r    5 PPVAIIMGS-QSDWKIMKYAADMLDTLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA---   79 (165)
Q Consensus         5 pkV~Ii~GS-~SD~~~~~~a~~~L~~~gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~---   79 (165)
                      .+|.|+.|+ -....+.++..+.|++.||.+.++ =...+-+.+.+.+-++.+...+++++|++-|+|.--..=..+   
T Consensus        32 k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~D~ivavGGGS~iD~AKaia~~~  111 (383)
T PRK09860         32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVA  111 (383)
T ss_pred             CEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             87999828456657469999999987699589968952796999999999999873999999938962267899999998


Q ss_pred             ----------------HCCCCEEEECCCCCC
Q ss_conf             ----------------224203661257766
Q gi|254780157|r   80 ----------------MTSLPVLGVPIISQT   94 (165)
Q Consensus        80 ----------------~t~~PVIgVP~~~~~   94 (165)
                                      .-.+|+|.||+-.|.
T Consensus       112 ~~~~~~~d~~g~~~~~~~~lP~iaIPTTaGT  142 (383)
T PRK09860        112 ANGGDIRDYEGVDRSAKPQLPMIAINTTAGT  142 (383)
T ss_pred             HCCCCHHHHHCCCCCCCCCCCEEEECCCCCC
T ss_conf             0899889973667556888988987399845


No 13 
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=95.61  E-value=0.1  Score=32.51  Aligned_cols=89  Identities=19%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCHHHHHHHCC
Q ss_conf             8749999588169899999999999809982654530103879999889876535982999972676-685113465224
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA-AHLPGMIAAMTS   82 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~a-aaLpgvva~~t~   82 (165)
                      ..++.||.|...---..++....|++-|++.... ..-+-+.+.+.++.+.....+++++|++-|+. .-+...++-+..
T Consensus        34 ~~k~lII~d~~v~~~~g~~v~~sL~~~g~~v~~~-~~~e~s~~~i~~l~~~~~~~~~d~vi~~GgG~~~D~~k~~a~~~~  112 (351)
T PRK00843         34 KGNALIVTGPTTKEIAGKKVEDSLKDAGFEVDVV-IVKDATMEEVEKVEEKARDSGAGFLIGVGGGSSIDVAKLASTRLG  112 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf             9958999895278999999999998669859999-379999999999999998459998999565168489999999829


Q ss_pred             CCEEEECCCCC
Q ss_conf             20366125776
Q gi|254780157|r   83 LPVLGVPIISQ   93 (165)
Q Consensus        83 ~PVIgVP~~~~   93 (165)
                      +|+|-||+..+
T Consensus       113 ~p~i~vpT~as  123 (351)
T PRK00843        113 IPFISVPTAAS  123 (351)
T ss_pred             CCEEEECCCCC
T ss_conf             99899527210


No 14 
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=95.45  E-value=0.15  Score=31.46  Aligned_cols=90  Identities=26%  Similarity=0.313  Sum_probs=69.3

Q ss_pred             CEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH-HHHHHC
Q ss_conf             7499995881-698999999999998099826545-3010387999988987653598299997267668511-346522
Q gi|254780157|r    5 PPVAIIMGSQ-SDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG-MIAAMT   81 (165)
Q Consensus         5 pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpg-vva~~t   81 (165)
                      .|+.|+.+.. ......++..+.|+.-||+|.++- ...+-+-+.+.+-.+.+++.+++.+|+.-|+|..-.. .++-++
T Consensus        30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~  109 (377)
T COG1454          30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA  109 (377)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             71599979863110669999999874498289956889999888999999999816999899977930878999999996


Q ss_pred             C------------------CCEEEECCCCCC
Q ss_conf             4------------------203661257766
Q gi|254780157|r   82 S------------------LPVLGVPIISQT   94 (165)
Q Consensus        82 ~------------------~PVIgVP~~~~~   94 (165)
                      .                  .|.|++|+-.|.
T Consensus       110 ~~~~~~~~~~~i~~~~~~~~plIaIPTTaGT  140 (377)
T COG1454         110 ENPGSVLDYEGIGKVKKPKAPLIAIPTTAGT  140 (377)
T ss_pred             HCCCHHHHHCCCCCCCCCCCCEEEECCCCCC
T ss_conf             0874066640556666789987982699863


No 15 
>pfam01761 DHQ_synthase 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.
Probab=95.37  E-value=0.3  Score=29.56  Aligned_cols=88  Identities=22%  Similarity=0.355  Sum_probs=69.4

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE---HHCCHHHHHHHHHHHHHCCC---EEEEEEECCCC-CCHHH
Q ss_conf             8749999588169899999999999809982654530---10387999988987653598---29999726766-85113
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIIS---AHRTPDRLIEFAKNARFEGF---KLIIAGAGGAA-HLPGM   76 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~S---AHR~p~~l~~~~~~~~~~~~---~viIa~AG~aa-aLpgv   76 (165)
                      ..++.|+++..-+.-+.++....|+..|++++..+..   .+++.+.+.++.+.+...+.   +++|++-|+.. -+.+.
T Consensus        19 ~~~~~iv~D~~v~~~~~~~i~~~L~~~~~~~~~~~~~~gE~~k~~~~~~~i~~~l~~~~~~r~d~iiaiGGG~v~D~ak~   98 (310)
T pfam01761        19 GRRLVVVTDENVAKLYGEKLEELLKAAGFEVEVVVIPDGETYKTLETVARIYDALLEKGLTRSDVIIALGGGVIGDLAGF   98 (310)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH
T ss_conf             98299998976799999999999987799579999569865489999999999999749997754999549621168999


Q ss_pred             HHH--HCCCCEEEECCC
Q ss_conf             465--224203661257
Q gi|254780157|r   77 IAA--MTSLPVLGVPII   91 (165)
Q Consensus        77 va~--~t~~PVIgVP~~   91 (165)
                      +|+  .--.|+|-||+.
T Consensus        99 ~A~~~~rg~~~i~iPTt  115 (310)
T pfam01761        99 AAATYMRGIPFIQVPTT  115 (310)
T ss_pred             HHHHHHCCCCEEEECCH
T ss_conf             99999769977986708


No 16 
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=95.22  E-value=0.074  Score=33.48  Aligned_cols=100  Identities=19%  Similarity=0.245  Sum_probs=75.8

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-HHHHHHHCCC
Q ss_conf             749999588169899999999999809982654530103879999889876535982999972676685-1134652242
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL-PGMIAAMTSL   83 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL-pgvva~~t~~   83 (165)
                      .++.|+.|-.+---..++..+.|+..|+ ....+...+-+-+.+.+..+.....+.+++|++-|+...- .=++|....+
T Consensus        31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~  109 (360)
T COG0371          31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL  109 (360)
T ss_pred             CCEEEEECHHHHHHHHHHHHHHHCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             8639998815999999899997503586-226765486777799999987044799989995681899999999998199


Q ss_pred             CEEEECCCCCCCCCCCCH-HHHHH
Q ss_conf             036612577666750016-99840
Q gi|254780157|r   84 PVLGVPIISQTLGGIDSL-LSIVQ  106 (165)
Q Consensus        84 PVIgVP~~~~~~~G~dal-lS~vq  106 (165)
                      |+|.||+..+. +|.-|= +|...
T Consensus       110 pfIsvPT~AS~-Da~~Sp~aSv~~  132 (360)
T COG0371         110 PFISVPTIAST-DAITSPVASVIY  132 (360)
T ss_pred             CEEECCCCCCC-CCCCCCCEEEEE
T ss_conf             97980576444-555688634687


No 17 
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=95.13  E-value=0.16  Score=31.39  Aligned_cols=111  Identities=20%  Similarity=0.320  Sum_probs=72.4

Q ss_pred             HHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHC
Q ss_conf             98099826545301038799998898765359829999726766851134652242036612577666750016998403
Q gi|254780157|r   28 DTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQM  107 (165)
Q Consensus        28 ~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vqM  107 (165)
                      .+|. ..++.|..+  +.++..+.++.+..+|++|||+--|.+..    +-.+++.|||.+|+++  ++=+.+|.-.-+.
T Consensus         4 ~~~~-~~~i~v~~~--~l~~av~~a~~~~~~g~dvIIsRGgta~~----ir~~~~iPVv~I~~s~--~Dil~al~~a~~~   74 (169)
T pfam06506         4 PEYA-DADVEVVDG--GLEDAVEVARALVAEGVDVIISRGGTAAY----LRDRLSVPVVEIKVSG--FDLLRALARARRY   74 (169)
T ss_pred             HHCC-CCEEEEEEC--CHHHHHHHHHHHHHCCCCEEEECCHHHHH----HHHHCCCCEEEEECCH--HHHHHHHHHHHHH
T ss_conf             1157-772799977--78999999999997799599989658999----9985899889982788--6999999999975


Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHHC--------CCHHHHHHHHHHHHH
Q ss_conf             56986204431675312289999999706--------999999999999999
Q gi|254780157|r  108 PAGVPVGTMAIGQSGAINASLLAVAILAL--------DDKELTDRLNEWRTQ  151 (165)
Q Consensus       108 P~Gvpvatv~vg~~~~~NAal~A~~Il~~--------~d~~i~~kl~~~r~~  151 (165)
                      .+-  ++.  +|-.+-....-.-.++|++        +.+++++.+++.+++
T Consensus        75 ~~k--iav--vg~~~~~~~~~~~~~il~~~i~~~~~~~~~e~~~~i~~l~~~  122 (169)
T pfam06506        75 GGR--IGL--VGYENIIPGLKALSELLGLDIVQRAYQSEEEARAAVKELKAQ  122 (169)
T ss_pred             CCC--EEE--EECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf             897--999--927630368999999969935999966889999999999986


No 18 
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.14  E-value=0.6  Score=27.57  Aligned_cols=129  Identities=16%  Similarity=0.188  Sum_probs=87.6

Q ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--H
Q ss_conf             4999958816989---9999999999809982654530103879999889876535982999972676685113465--2
Q gi|254780157|r    6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--M   80 (165)
Q Consensus         6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--~   80 (165)
                      ||+++.-+-++--   +.+.+.+.++++|..+.+.+.+....+++-.++++++..++++.+|....-..++...+..  .
T Consensus         1 KIGvivp~i~npff~~~~~gie~~a~~~g~~~~v~~~~~~~d~~~q~~~i~~li~~~vDgIii~~~~~~~~~~~i~~a~~   80 (271)
T cd06321           1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQA   80 (271)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             98999489989899999999999999719976999807988999999999999974998899934784035999999997


Q ss_pred             CCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC--------------CCHHHHHHHH
Q ss_conf             24203661257766675001699840356986204431675312289999999706--------------9999999999
Q gi|254780157|r   81 TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILAL--------------DDKELTDRLN  146 (165)
Q Consensus        81 t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~--------------~d~~i~~kl~  146 (165)
                      ...|||.+-...   .+.|              .+  |+.|| +.++..|++.|.-              ......+|+.
T Consensus        81 ~gIpvV~~d~~~---~~~~--------------~~--V~~dn-~~~g~~a~~~L~~~~~~~~~i~~~~g~~~~~~~~R~~  140 (271)
T cd06321          81 AGIVVVAVDVAA---EGAD--------------AT--VTTDN-VQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVA  140 (271)
T ss_pred             CCCEEEEEEECC---CCCC--------------CE--EEECH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
T ss_conf             499189986058---9987--------------28--99769-9999999987887528960799975998535999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780157|r  147 EWRTQQTI  154 (165)
Q Consensus       147 ~~r~~~~~  154 (165)
                      -|++.+.+
T Consensus       141 G~~~~l~~  148 (271)
T cd06321         141 GCKAALAK  148 (271)
T ss_pred             HHHHHHHH
T ss_conf             99999987


No 19 
>PRK00861 putative lipid kinase; Reviewed
Probab=93.80  E-value=0.7  Score=27.15  Aligned_cols=83  Identities=18%  Similarity=0.308  Sum_probs=54.5

Q ss_pred             CCCEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH
Q ss_conf             887499995----8816989999999999980998265453010387999988987653598299997267668511346
Q gi|254780157|r    3 IAPPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA   78 (165)
Q Consensus         3 ~~pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva   78 (165)
                      |+.|+.+|.    |+..-....+++...|+. ++++++.....-.   ...++++++..+++++ |.++|+.+.+.-|+.
T Consensus         1 M~kr~~~IvNP~aG~g~~~~~~~~i~~~l~~-~~~~~v~~T~~~~---~a~~la~~a~~~~~d~-vv~~GGDGTv~ev~~   75 (296)
T PRK00861          1 MTRSACLIFNPVAGQGNPEVDLALIRAILQP-EMDLDIYLTTPEI---GADALAQEAVERGAEL-IIASGGDGTISAVAG   75 (296)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEECCCC---CHHHHHHHHHHCCCCE-EEEECCHHHHHHHHH
T ss_conf             9707999998678998646579999999972-9968999957888---6999999998679989-999888189999997


Q ss_pred             HHC--CCCEEEECCC
Q ss_conf             522--4203661257
Q gi|254780157|r   79 AMT--SLPVLGVPII   91 (165)
Q Consensus        79 ~~t--~~PVIgVP~~   91 (165)
                      ++.  ..| +|+=|.
T Consensus        76 gl~~~~~~-lgiiP~   89 (296)
T PRK00861         76 ALIGTDIP-LGIIPR   89 (296)
T ss_pred             HHCCCCCC-EEEEEC
T ss_conf             53358961-699807


No 20 
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=93.22  E-value=0.87  Score=26.54  Aligned_cols=86  Identities=15%  Similarity=0.121  Sum_probs=66.3

Q ss_pred             EEEEEECCCCCHH--HH-HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--
Q ss_conf             4999958816989--99-999999998099826545301038799998898765359829999726766851134652--
Q gi|254780157|r    6 PVAIIMGSQSDWK--IM-KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--   80 (165)
Q Consensus         6 kV~Ii~GS~SD~~--~~-~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--   80 (165)
                      ||++++-+-+|--  .+ +.+.+..+++|.++++.+..+.-.+.+-.+.++++..+++++||...--+.++..++..-  
T Consensus         1 kIGv~~~~~~npF~~~~~~g~e~~a~e~g~~v~~~~~da~~D~~~Q~~~Ie~~I~qgvD~Iii~p~d~~~~~~~i~~A~~   80 (303)
T cd01539           1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ   80 (303)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             98999648899899999999999999859957999707878999999999999975999999946873348999999996


Q ss_pred             CCCCEEEECCC
Q ss_conf             24203661257
Q gi|254780157|r   81 TSLPVLGVPII   91 (165)
Q Consensus        81 t~~PVIgVP~~   91 (165)
                      --.|||.+-..
T Consensus        81 agIPVI~~d~~   91 (303)
T cd01539          81 KNIPVIFFNRE   91 (303)
T ss_pred             CCCEEEEECCC
T ss_conf             69849998787


No 21 
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=93.17  E-value=0.59  Score=27.64  Aligned_cols=79  Identities=19%  Similarity=0.168  Sum_probs=63.9

Q ss_pred             EEEEEE--CCCCCHHHHHHHHHHHHHCCC-CEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             499995--881698999999999998099-82654530103879999889876535982999972676685113465224
Q gi|254780157|r    6 PVAIIM--GSQSDWKIMKYAADMLDTLGI-DYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus         6 kV~Ii~--GS~SD~~~~~~a~~~L~~~gI-~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      +|+|..  -..+=....+.+.+.|+++|. ..++.+-++|-++..+.++++....++.+++|++++-++.  .+++...+
T Consensus        32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq--~~~s~~~~  109 (322)
T COG2984          32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQ--ALVSATKT  109 (322)
T ss_pred             EEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHH--HHHHHCCC
T ss_conf             6889985066559999997899998648667289962477885789999999614799679961778999--99984679


Q ss_pred             CCEE
Q ss_conf             2036
Q gi|254780157|r   83 LPVL   86 (165)
Q Consensus        83 ~PVI   86 (165)
                      .||+
T Consensus       110 iPVV  113 (322)
T COG2984         110 IPVV  113 (322)
T ss_pred             CCEE
T ss_conf             8879


No 22 
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=92.70  E-value=1  Score=26.07  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             EEEEEECCCCC-H--HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC-
Q ss_conf             49999588169-8--9999999999980998265453010387999988987653598299997267668511346522-
Q gi|254780157|r    6 PVAIIMGSQSD-W--KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT-   81 (165)
Q Consensus         6 kV~Ii~GS~SD-~--~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t-   81 (165)
                      |+++++-+.+| +  .+.+.+.+..+++|++  +.+..++-.+++-.+.++++..++++.||....-..++...+.-.. 
T Consensus         1 kIa~~~~~~~~~f~~~~~~G~~~~A~~~G~~--~~v~d~~~d~~~Q~~~i~~~i~~~vDgIii~p~d~~~~~~~l~~a~~   78 (273)
T cd06305           1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGD--LRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD   78 (273)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             9899971788979999999999999974998--99973999999999999999985999999946871444899999998


Q ss_pred             -CCCEEEEC
Q ss_conf             -42036612
Q gi|254780157|r   82 -SLPVLGVP   89 (165)
Q Consensus        82 -~~PVIgVP   89 (165)
                       -.|||.+=
T Consensus        79 aGIPVV~~d   87 (273)
T cd06305          79 AGIPVVAFD   87 (273)
T ss_pred             CCCCEEEEC
T ss_conf             599789981


No 23 
>PRK11914 diacylglycerol kinase; Reviewed
Probab=92.51  E-value=1.1  Score=25.91  Aligned_cols=83  Identities=17%  Similarity=0.266  Sum_probs=60.7

Q ss_pred             CCEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH
Q ss_conf             87499995----88169899999999999809982654530103879999889876535982999972676685113465
Q gi|254780157|r    4 APPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA   79 (165)
Q Consensus         4 ~pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~   79 (165)
                      ..||.||.    |+..-....++....|++.|++++.....   .+....++++++..++++.+|+ +|+.+.+--|+.+
T Consensus         6 m~kv~vIvNP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~t~---~~~~a~~la~~a~~~g~d~vv~-~GGDGTv~ev~~~   81 (304)
T PRK11914          6 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT---DAHHARHLVAAALAKGTDALVV-VGGDGVISNALQV   81 (304)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHHH
T ss_conf             86699999977799856889999999999879909999327---8789999999888649969999-9562598898764


Q ss_pred             H--CCCCEEEECCC
Q ss_conf             2--24203661257
Q gi|254780157|r   80 M--TSLPVLGVPII   91 (165)
Q Consensus        80 ~--t~~PVIgVP~~   91 (165)
                      +  +..| +|+=|.
T Consensus        82 l~~~~~p-lgiiP~   94 (304)
T PRK11914         82 LAGTDIP-LGIIPA   94 (304)
T ss_pred             HCCCCCE-EEEECC
T ss_conf             1357860-899638


No 24 
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=91.96  E-value=1.3  Score=25.49  Aligned_cols=97  Identities=16%  Similarity=0.264  Sum_probs=61.2

Q ss_pred             EEEEECCCCCH---HHHHHHHHHHH-HCCCCEEEEEEEHHCCH-------HHHHHHHHHHHH-CCCEEEEEEECCCCCCH
Q ss_conf             99995881698---99999999999-80998265453010387-------999988987653-59829999726766851
Q gi|254780157|r    7 VAIIMGSQSDW---KIMKYAADMLD-TLGIDYEARIISAHRTP-------DRLIEFAKNARF-EGFKLIIAGAGGAAHLP   74 (165)
Q Consensus         7 V~Ii~GS~SD~---~~~~~a~~~L~-~~gI~~~~~V~SAHR~p-------~~l~~~~~~~~~-~~~~viIa~AG~aaaLp   74 (165)
                      +..+-.. .|+   +..++..+.++ +.+=+|.+-..+  ++|       .-.+|+....+. -..+-++++.|-.+..+
T Consensus       119 ~~~~~~~-~d~~~~~~~~~~~e~~~~~g~kpyvIp~gG--~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~A  195 (323)
T COG2515         119 VRAVDAG-TDIGINASAEELAEEVRKQGGKPYVIPEGG--SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHA  195 (323)
T ss_pred             EEEECCC-CCHHHCHHHHHHHHHHHHCCCCCCEECCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf             7871588-886433106789999996179983722677--6855441288899999999963137777999678851089


Q ss_pred             HHHHHHC----CCCEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             1346522----4203661257766675001699840
Q gi|254780157|r   75 GMIAAMT----SLPVLGVPIISQTLGGIDSLLSIVQ  106 (165)
Q Consensus        75 gvva~~t----~~PVIgVP~~~~~~~G~dallS~vq  106 (165)
                      |.++++.    ..+|||||++...-.--.-++.+.|
T Consensus       196 Gl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~l~~  231 (323)
T COG2515         196 GLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQ  231 (323)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             999876510688846887604887998999999999


No 25 
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=91.50  E-value=1.4  Score=25.25  Aligned_cols=84  Identities=20%  Similarity=0.124  Sum_probs=60.1

Q ss_pred             EEEEEECC--CCCHHHHHHHHHHHHHCCC----CEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH
Q ss_conf             49999588--1698999999999998099----82654530103879999889876535982999972676685113465
Q gi|254780157|r    6 PVAIIMGS--QSDWKIMKYAADMLDTLGI----DYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA   79 (165)
Q Consensus         6 kV~Ii~GS--~SD~~~~~~a~~~L~~~gI----~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~   79 (165)
                      ||+|+--.  .+=-+..+...+.|++.|.    +.++.+-+|...+..+..+++++..+++++|++.+.-++.  .+...
T Consensus         1 ~igi~q~~~h~~ld~~~~Gf~~~L~~~G~~~g~nv~~~~~na~gd~~~l~~ia~~l~~~~~DlIva~gTpaaq--a~~~~   78 (281)
T cd06325           1 KVGILQLVEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFVADKPDLIVAIATPAAQ--AAANA   78 (281)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHHHC
T ss_conf             9389983376747999999999999649767983799996079999999999999985499999987709999--99962


Q ss_pred             HCCCCEEEECCC
Q ss_conf             224203661257
Q gi|254780157|r   80 MTSLPVLGVPII   91 (165)
Q Consensus        80 ~t~~PVIgVP~~   91 (165)
                      .++.||+-+.+.
T Consensus        79 ~~~iPIVF~~V~   90 (281)
T cd06325          79 TKDIPIVFTAVT   90 (281)
T ss_pred             CCCCCEEEEECC
T ss_conf             799998999516


No 26 
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=91.31  E-value=1.3  Score=25.42  Aligned_cols=74  Identities=19%  Similarity=0.130  Sum_probs=55.5

Q ss_pred             CCEEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH
Q ss_conf             8749999588-1698999999999998099826545-301038799998898765359829999726766851134
Q gi|254780157|r    4 APPVAIIMGS-QSDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI   77 (165)
Q Consensus         4 ~pkV~Ii~GS-~SD~~~~~~a~~~L~~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv   77 (165)
                      ..|+.|+... -.++-+.++....|++-||+|+++- ..+--+.+.+.+=++.+...++++||++-|+|..-..=.
T Consensus       482 ~kralIVTD~~~~~~G~vd~v~~~L~~~gi~~~vFd~V~pdPt~~~V~~G~~~~~~~~~D~IIalGGGS~iDaAKa  557 (862)
T PRK13805        482 KKRAFIVTDRGMVELGYVDKVTDVLRANGVETEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKI  557 (862)
T ss_pred             CCEEEEECCHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
T ss_conf             9779998785187678899999999986983999669899939799999999998649999999478348899999


No 27 
>PRK13059 putative lipid kinase; Reviewed
Probab=90.90  E-value=1.6  Score=24.80  Aligned_cols=97  Identities=22%  Similarity=0.242  Sum_probs=60.0

Q ss_pred             CEEEEEE----CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             7499995----881698999999999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r    5 PPVAIIM----GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         5 pkV~Ii~----GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      +|+.+|.    |+.+=....+++...|++.|++++..-.+...   ......+.. ++++++ |.++|+.+.+--|+.++
T Consensus         2 kk~~~I~NP~sG~g~~~~~~~~i~~~l~~~~~~~~~~~t~~~~---~~~~a~~~~-~~~~d~-vv~~GGDGTinevvngl   76 (294)
T PRK13059          2 KKVKFIYNPYSGENAIISELDKVIEIHQKYGYLVVPYRISLGC---DLKEAFKDI-DESYKY-ILIAGGDGTVDNVVNAM   76 (294)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC---HHHHHHHHH-HCCCCE-EEEEECCCHHHHHHHHH
T ss_conf             7799999976688666889999999999779889999853560---899999988-748988-99995678899999999


Q ss_pred             CC---CCEEEECCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             24---2036612577666750016998403569
Q gi|254780157|r   81 TS---LPVLGVPIISQTLGGIDSLLSIVQMPAG  110 (165)
Q Consensus        81 t~---~PVIgVP~~~~~~~G~dallS~vqMP~G  110 (165)
                      ..   .+.+|+=|.+.   |-| +-.++++|..
T Consensus        77 ~~~~~~~~lgiiP~GT---gNd-fAr~Lgip~~  105 (294)
T PRK13059         77 KKLNIDIPIGILPVGT---AND-FAKFIGMPTN  105 (294)
T ss_pred             HHCCCCCCEEEEECCC---CCH-HHHHCCCCCC
T ss_conf             8569998579982677---507-8998299999


No 28 
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=90.68  E-value=1.3  Score=25.42  Aligned_cols=72  Identities=26%  Similarity=0.279  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH-HCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCC
Q ss_conf             879999889876535982999972676685113465-2242036612577666750016998403569862044316753
Q gi|254780157|r   44 TPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA-MTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSG  122 (165)
Q Consensus        44 ~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~-~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~  122 (165)
                      |-+.....++++.++|.+ +|+.||+.+..--+..+ --..||+|+|.-...             -+|++--       .
T Consensus        85 Ta~DT~~~~r~~~~~gVd-lIvfaGGDGTarDVa~av~~~vPvLGipaGvk~-------------~SgvfA~-------~  143 (355)
T COG3199          85 TAEDTINAVRRMVERGVD-LIVFAGGDGTARDVAEAVGADVPVLGIPAGVKN-------------YSGVFAL-------S  143 (355)
T ss_pred             CHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHCCCCCCEEEECCCCCE-------------ECCCCCC-------C
T ss_conf             379999999999865961-999957885299998532678866741356502-------------0352014-------8


Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             12289999999706
Q gi|254780157|r  123 AINASLLAVAILAL  136 (165)
Q Consensus       123 ~~NAal~A~~Il~~  136 (165)
                      +.-||.++.+.+--
T Consensus       144 P~~aa~l~~~~lkg  157 (355)
T COG3199         144 PEDAARLLGAFLKG  157 (355)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             27789999998534


No 29 
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=89.30  E-value=1.8  Score=24.56  Aligned_cols=90  Identities=14%  Similarity=0.141  Sum_probs=55.6

Q ss_pred             CEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHH--HCCCEEEEEEECCCCCCHHHHHHH-
Q ss_conf             7499995881-698999999999998099826545301038799998898765--359829999726766851134652-
Q gi|254780157|r    5 PPVAIIMGSQ-SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNAR--FEGFKLIIAGAGGAAHLPGMIAAM-   80 (165)
Q Consensus         5 pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~--~~~~~viIa~AG~aaaLpgvva~~-   80 (165)
                      .|+.|+.+.. ....+.++....|+..++.+- .=...+-+.+.+.+-++.+.  +.+++++|++-|+|.--..=..+. 
T Consensus        24 k~~llVt~~~~~~~g~~~~v~~~L~~~~~~vf-~~V~pnP~~~~v~~~~~~~~~~e~~~D~IiavGGGS~iD~AKaia~~  102 (355)
T TIGR03405        24 RRVVVVTFPEARALGLARRLEALLGGRLAALI-DDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVG  102 (355)
T ss_pred             CEEEEEECCCHHHCCHHHHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             84999979636554399999998189955999-27468949899999999998423699889980785187889999999


Q ss_pred             ----------------------CCCCEEEECCCCCCC
Q ss_conf             ----------------------242036612577666
Q gi|254780157|r   81 ----------------------TSLPVLGVPIISQTL   95 (165)
Q Consensus        81 ----------------------t~~PVIgVP~~~~~~   95 (165)
                                            -.+|+|.||+-.|..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~lP~iaIPTTaGTG  139 (355)
T TIGR03405       103 LRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTG  139 (355)
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             7189758889887337767755789989843899754


No 30 
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.77  E-value=2.4  Score=23.72  Aligned_cols=83  Identities=14%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             EEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC-
Q ss_conf             49999588169---89999999999980998265453010387999988987653598299997267668511346522-
Q gi|254780157|r    6 PVAIIMGSQSD---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT-   81 (165)
Q Consensus         6 kV~Ii~GS~SD---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t-   81 (165)
                      |+++|..+.++   ..+.+.+.+..+++|+...+.-.+..-.+++-.+.++++..++++.||.......++...+.-.. 
T Consensus         1 kIg~i~~~~~npf~~~v~~G~e~aA~~~G~~v~~~~~~~~~d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~~~l~~a~~   80 (273)
T cd06310           1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD   80 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             98999599998599999999999999809989997289978999999999999974999999916871447999999998


Q ss_pred             -CCCEEEE
Q ss_conf             -4203661
Q gi|254780157|r   82 -SLPVLGV   88 (165)
Q Consensus        82 -~~PVIgV   88 (165)
                       -.|||-+
T Consensus        81 ~gIPvV~~   88 (273)
T cd06310          81 AGIPVVLI   88 (273)
T ss_pred             CCCCEEEE
T ss_conf             49985898


No 31 
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=88.41  E-value=2.5  Score=23.57  Aligned_cols=72  Identities=18%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHCCCC---EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCC
Q ss_conf             9999999999980998---2654530103879999889876535982999972676685113465224203661257
Q gi|254780157|r   18 KIMKYAADMLDTLGID---YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPII   91 (165)
Q Consensus        18 ~~~~~a~~~L~~~gI~---~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~   91 (165)
                      ...+...+-|+++|+.   ..+.+-+|...+.++..++++...+++++|++++.-++.  .+....++.||+-+.+.
T Consensus        15 ~~~~g~~~~L~~~G~~~~n~~~~~~na~gd~~~~~~ia~~l~~~~~Dli~a~~Tpaa~--a~~~~~~~iPIVf~~v~   89 (292)
T pfam04392        15 AIVDGIQEALKDFGYEPKNVLIKVKNAEGDPSKAAQIARQLVTDKNDLIIGIATPVAQ--ILKSAIKTIPIVFAAVT   89 (292)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHH--HHHHHCCCCCEEEEEEC
T ss_conf             9999999999975997656599995078999999999999973799899987509999--99983599998999726


No 32 
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=88.31  E-value=2.5  Score=23.53  Aligned_cols=83  Identities=17%  Similarity=0.309  Sum_probs=54.3

Q ss_pred             CCCEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             8874999958816--98999999999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r    3 IAPPVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         3 ~~pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      |++||.+-+||-=  ---++++..+.|++-||++++.=++.--.|    .+     .++.+++|+-.-....       .
T Consensus         1 MkKkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ev~----~~-----~~~~DlivtTt~~~~~-------~   64 (94)
T PRK10310          1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE----TY-----MDGVHLICTTARVDRS-------F   64 (94)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHH----HC-----CCCCCEEEEECCCCCC-------C
T ss_conf             995599985883759999999999999985980689997478755----41-----6897789992253776-------5


Q ss_pred             CCCCEE-EECCCCCCCCCCCCHHH
Q ss_conf             242036-61257766675001699
Q gi|254780157|r   81 TSLPVL-GVPIISQTLGGIDSLLS  103 (165)
Q Consensus        81 t~~PVI-gVP~~~~~~~G~dallS  103 (165)
                      -+.||| |.|-.+|  -|.|.++-
T Consensus        65 g~iPvi~g~~fLTG--iG~d~~~~   86 (94)
T PRK10310         65 GDIPLVHGMPFVSG--VGIEALQN   86 (94)
T ss_pred             CCCCEEECCCCCCC--CCHHHHHH
T ss_conf             88877963420003--78899999


No 33 
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=88.02  E-value=2.6  Score=23.41  Aligned_cols=87  Identities=17%  Similarity=0.232  Sum_probs=67.0

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---HCCHHHHHHHHHHHHHCCC---EEEEEEEC-CCCCCHHHH
Q ss_conf             7499995881698999999999998099826545301---0387999988987653598---29999726-766851134
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---HRTPDRLIEFAKNARFEGF---KLIIAGAG-GAAHLPGMI   77 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l~~~~~~~~~~~~---~viIa~AG-~aaaLpgvv   77 (165)
                      .|+.|+.-+.-+.-+.+.....|+..|+++...+..+   +++.+.+.++.+.+.+.+.   .++|++-| --.-+.|.+
T Consensus        33 ~r~~iitD~~V~~l~~~~l~~~l~~~~~~~~~~~i~~gE~~K~l~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~DlaGF~  112 (360)
T PRK00002         33 RKVVIVTDETVAPLYLEKLRAALEAAGFEVDVVVLPDGEQYKSLETLERIYDALLEAGLDRSDTLIALGGGVVGDLAGFA  112 (360)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHH
T ss_conf             97999989856899999999999976990799996797431779899999999997699988731530663765889999


Q ss_pred             HHHCC--CCEEEECCC
Q ss_conf             65224--203661257
Q gi|254780157|r   78 AAMTS--LPVLGVPII   91 (165)
Q Consensus        78 a~~t~--~PVIgVP~~   91 (165)
                      |+.--  .|.|-+|+.
T Consensus       113 As~y~RGi~~i~iPTT  128 (360)
T PRK00002        113 AATYMRGIRFIQVPTT  128 (360)
T ss_pred             HHHHHCCCCEEECCCH
T ss_conf             9998479977974600


No 34 
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.81  E-value=2.7  Score=23.33  Aligned_cols=82  Identities=15%  Similarity=0.151  Sum_probs=61.3

Q ss_pred             EEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC-
Q ss_conf             499995881698---9999999999980998265453010387999988987653598299997267668511346522-
Q gi|254780157|r    6 PVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT-   81 (165)
Q Consensus         6 kV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t-   81 (165)
                      ||++++-+..+-   ...+.+.+..+++|++. +.+..++-.+.+-.+.++++..+++++||....-..++...+..-. 
T Consensus         1 kia~v~~~~~n~f~~~~~~Ga~~aA~~lG~~v-~~~~da~~d~~~Q~~~i~~~I~~gvDaIii~p~d~~a~~~~v~~A~~   79 (294)
T cd06316           1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEV-VATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAE   79 (294)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCEE-EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             98999578899899999999999999839989-99669988999999999999985999999938886787999999998


Q ss_pred             -CCCEEEE
Q ss_conf             -4203661
Q gi|254780157|r   82 -SLPVLGV   88 (165)
Q Consensus        82 -~~PVIgV   88 (165)
                       -.|||.+
T Consensus        80 aGIpVv~~   87 (294)
T cd06316          80 AGIKLVFM   87 (294)
T ss_pred             CCCCEEEE
T ss_conf             19967983


No 35 
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=87.45  E-value=2.9  Score=23.20  Aligned_cols=84  Identities=15%  Similarity=0.145  Sum_probs=59.9

Q ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCC---CCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH
Q ss_conf             4999958816989---9999999999809---982654530103879999889876535982999972676685113465
Q gi|254780157|r    6 PVAIIMGSQSDWK---IMKYAADMLDTLG---IDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA   79 (165)
Q Consensus         6 kV~Ii~GS~SD~~---~~~~a~~~L~~~g---I~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~   79 (165)
                      |+++.+..-+|--   ..+.+.+..+++|   +..++.+..+.-.+.+-.+.++++..++++.||....-..++..++.-
T Consensus         1 kIg~~~~~~~n~f~~~~~~~~~~~ak~~~~~~~~~~~~~~da~~D~~kQ~~~ie~~I~qgvD~Iiv~p~d~~a~~~~l~~   80 (272)
T cd06300           1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEE   80 (272)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf             98999368899799999999999998637667415899976999999999999999985999999978976788999999


Q ss_pred             H--CCCCEEEEC
Q ss_conf             2--242036612
Q gi|254780157|r   80 M--TSLPVLGVP   89 (165)
Q Consensus        80 ~--t~~PVIgVP   89 (165)
                      .  .-.|||.+-
T Consensus        81 A~~aGIpVV~~d   92 (272)
T cd06300          81 ACEAGIPVVSFD   92 (272)
T ss_pred             HHHCCCEEEEEC
T ss_conf             998599699966


No 36 
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=87.30  E-value=2.9  Score=23.14  Aligned_cols=49  Identities=16%  Similarity=0.204  Sum_probs=28.5

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             9988749999588169899999999999809982654530103879999889876
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |+++-||++|.|+.+.  +...+++.|-+.|..    |+-..|+++++.+..++.
T Consensus         1 m~L~~Kv~lITGgs~G--IG~a~a~~la~~G~~----V~~~~r~~~~l~~~~~~~   49 (246)
T PRK05653          1 MSLQGKTALVTGASRG--IGRAIALRLAADGAR----VVIYDSNEEAAEALAEEL   49 (246)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHH
T ss_conf             9989988999389758--999999999987999----999979999999999999


No 37 
>KOG2835 consensus
Probab=86.82  E-value=0.57  Score=27.74  Aligned_cols=62  Identities=15%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCHHHHHHHC
Q ss_conf             9999999999980998265453010387999988987653598-299997267668511346522
Q gi|254780157|r   18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF-KLIIAGAGGAAHLPGMIAAMT   81 (165)
Q Consensus        18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~-~viIa~AG~aaaLpgvva~~t   81 (165)
                      +.|+.-+.....-|  +.+.++|||..++.-..+.++++..+. .++++.+|+++.|+.|..+++
T Consensus       250 ~~msr~a~~a~~~~--~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~  312 (373)
T KOG2835         250 PVMSRYATSAKSRG--VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG  312 (373)
T ss_pred             HHHHHHHHHCCCCC--EEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCC
T ss_conf             04666654025666--1899951677777725677646366852332111553344450333677


No 38 
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=85.82  E-value=3.5  Score=22.64  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             EEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC-
Q ss_conf             499995881698999---9999999980998265453010387999988987653598299997267668511346522-
Q gi|254780157|r    6 PVAIIMGSQSDWKIM---KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT-   81 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~---~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t-   81 (165)
                      ||++++-+-+|--+.   +.+.+..++++ .|++.+.+++-.+.+-.+.++++..++++.+|...--..++...+.... 
T Consensus         1 KIGviv~~~~n~f~~~~~~g~e~~a~~~~-g~~v~~~~~~~d~~~Q~~~i~~li~~~vDgIii~p~d~~~~~~~~~~a~~   79 (272)
T cd06301           1 KIGVSMANFDDNFLTLLRNAMKEHAKVLG-GVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANA   79 (272)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             98999389879899999999999999749-97899977999999999999999985999999955882111899999998


Q ss_pred             -CCCEEEE
Q ss_conf             -4203661
Q gi|254780157|r   82 -SLPVLGV   88 (165)
Q Consensus        82 -~~PVIgV   88 (165)
                       -.|||.+
T Consensus        80 agIPvV~~   87 (272)
T cd06301          80 AGIPLVYV   87 (272)
T ss_pred             CCCCEEEE
T ss_conf             69988999


No 39 
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829    Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=85.50  E-value=1  Score=26.14  Aligned_cols=80  Identities=25%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC--CCEEEECCCCC-------CC-----------CCCCCHHHHH
Q ss_conf             9999889876535982999972676685113465224--20366125776-------66-----------7500169984
Q gi|254780157|r   46 DRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS--LPVLGVPIISQ-------TL-----------GGIDSLLSIV  105 (165)
Q Consensus        46 ~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~--~PVIgVP~~~~-------~~-----------~G~dallS~v  105 (165)
                      |.-.++..++++.|.|++|++ |+++.|...---.-.  +||||||=--+       +-           .-+|-|-||.
T Consensus        93 DvSd~~~~n~~~~GlDAlIaI-GGdGTL~~A~~l~~~GGl~vVGVPKTIDNDl~~TD~TFGFDTAv~iATEAlDRLhtTA  171 (339)
T TIGR02483        93 DVSDKIVANLKELGLDALIAI-GGDGTLGIARRLADKGGLPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTA  171 (339)
T ss_pred             ECCHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHH
T ss_conf             320899998996498189986-6872689999999658985474157754675324402221007899999875240058


Q ss_pred             HCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             03569862044316753122899999
Q gi|254780157|r  106 QMPAGVPVGTMAIGQSGAINASLLAV  131 (165)
Q Consensus       106 qMP~Gvpvatv~vg~~~~~NAal~A~  131 (165)
                      .-..=|=|.=  |   =|++|+|.|.
T Consensus       172 eSH~RVmVvE--V---MGRhAGWIAL  192 (339)
T TIGR02483       172 ESHHRVMVVE--V---MGRHAGWIAL  192 (339)
T ss_pred             HHHCCEEEEE--E---CCCCHHHHHH
T ss_conf             7319489999--8---4854579998


No 40 
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=85.33  E-value=3.7  Score=22.49  Aligned_cols=82  Identities=15%  Similarity=0.262  Sum_probs=60.0

Q ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             4999958816989---9999999999809982654530103879999889876535982999972676685113465224
Q gi|254780157|r    6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus         6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      |+++++-+-++--   ..+.+.+..+++|+  ++.+.++...+.+-.+.++++..++++.||...--+.++...+.....
T Consensus         1 kIGv~vp~l~n~ff~~~~~g~e~~A~e~G~--~v~~~~~~~d~~~Q~~~i~~lia~~vD~Iii~p~d~~a~~~~l~~a~~   78 (288)
T cd01538           1 KIGLSLPTKTEERWIRDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAAD   78 (288)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             989990798897999999999999997699--899971899999999999999984998999867753443999999997


Q ss_pred             --CCEEEEC
Q ss_conf             --2036612
Q gi|254780157|r   83 --LPVLGVP   89 (165)
Q Consensus        83 --~PVIgVP   89 (165)
                        .|||.+-
T Consensus        79 agIPVV~~D   87 (288)
T cd01538          79 AGIPVIAYD   87 (288)
T ss_pred             CCCEEEEEC
T ss_conf             599999987


No 41 
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.76  E-value=1.8  Score=24.53  Aligned_cols=86  Identities=19%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             CCEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEEEHHCC----HHHHHH------HHHHHHHCCCEEEEEEECCCC
Q ss_conf             8749999588169--8999999999998099826545301038----799998------898765359829999726766
Q gi|254780157|r    4 APPVAIIMGSQSD--WKIMKYAADMLDTLGIDYEARIISAHRT----PDRLIE------FAKNARFEGFKLIIAGAGGAA   71 (165)
Q Consensus         4 ~pkV~Ii~GS~SD--~~~~~~a~~~L~~~gI~~~~~V~SAHR~----p~~l~~------~~~~~~~~~~~viIa~AG~aa   71 (165)
                      .+||+||.-..++  ...+++..+.|++-|+++-+.--+|+..    |+.-..      ...+.-...++.+|+. |+.+
T Consensus         1 M~kiGIi~~~~~~~a~~~a~~l~~~L~~~gi~v~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~Ivl-GGDG   79 (305)
T PRK02649          1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGMLGYANPDQPVCHTGIDALVPEGFDSSMKFAIVL-GGDG   79 (305)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCH
T ss_conf             988999973899899999999999999889999997441232287875532112441112633357773399998-3769


Q ss_pred             CCHHHHH--HHCCCCEEEECC
Q ss_conf             8511346--522420366125
Q gi|254780157|r   72 HLPGMIA--AMTSLPVLGVPI   90 (165)
Q Consensus        72 aLpgvva--~~t~~PVIgVP~   90 (165)
                      .+-.+.-  +....|++|+=.
T Consensus        80 T~L~aar~~~~~~iPilGIN~  100 (305)
T PRK02649         80 TVLSAARQTAPCGIPLLTINT  100 (305)
T ss_pred             HHHHHHHHHCCCCCCEEEEEC
T ss_conf             999999985336997898944


No 42 
>PRK09072 short chain dehydrogenase; Provisional
Probab=84.65  E-value=3.9  Score=22.29  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             998874999958816989999999999980998
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID   33 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~   33 (165)
                      |+++-|+++|.|..|  -+.+.++..|.+.|..
T Consensus         1 M~l~~K~vlITGass--GIG~a~A~~la~~G~~   31 (262)
T PRK09072          1 MDLKDKRVLLTGASG--GIGEALAEALCAAGAR   31 (262)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCE
T ss_conf             998998899948623--9999999999987998


No 43 
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase  family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=84.32  E-value=4.1  Score=22.20  Aligned_cols=41  Identities=10%  Similarity=0.236  Sum_probs=35.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEEEEHHCCHH
Q ss_conf             4999958816989999999999980-9982654530103879
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTL-GIDYEARIISAHRTPD   46 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~-gI~~~~~V~SAHR~p~   46 (165)
                      ||+++.|+-+|+-.+......|++. ++++.+-+.+.|..+.
T Consensus         1 KI~~vtGtRae~~kl~pl~~~l~~~~~~~~~li~TGqH~~~~   42 (363)
T cd03786           1 KILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDME   42 (363)
T ss_pred             CEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf             989999313719999999999974899988999938976701


No 44 
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.17  E-value=2.5  Score=23.57  Aligned_cols=85  Identities=21%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             CCCCCEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH
Q ss_conf             9988749999588169--89999999999980998265453010387999988987653598299997267668511346
Q gi|254780157|r    1 MNIAPPVAIIMGSQSD--WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA   78 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD--~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva   78 (165)
                      |+++ ||+|+.=..+.  ...++++++.|+.-||++-+.-..+++.+..  .+.... .+.++.+|+ -|+.+.+-.+.-
T Consensus         1 m~lk-~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~--~~~~~~-~~~~Dlvi~-lGGDGT~L~aar   75 (304)
T PRK02645          1 MQLK-LVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYP--VFLASA-EELPDLAIV-LGGDGTVLAAAR   75 (304)
T ss_pred             CCCC-EEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC--CCCCCC-CCCCCEEEE-ECCCHHHHHHHH
T ss_conf             9745-99999858999999999999999998889999844434447776--200144-668889999-786889999999


Q ss_pred             H--HCCCCEEEECC
Q ss_conf             5--22420366125
Q gi|254780157|r   79 A--MTSLPVLGVPI   90 (165)
Q Consensus        79 ~--~t~~PVIgVP~   90 (165)
                      .  ....|++|+-.
T Consensus        76 ~~~~~~iPilGiN~   89 (304)
T PRK02645         76 HLAPHDIPILSFNV   89 (304)
T ss_pred             HHCCCCCCEEEEEC
T ss_conf             85426998899824


No 45 
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=82.93  E-value=4.6  Score=21.84  Aligned_cols=101  Identities=26%  Similarity=0.383  Sum_probs=61.8

Q ss_pred             CCEEEEEE-CCCCCH-----HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC-----
Q ss_conf             87499995-881698-----9999999999980998265453010387999988987653598299997267668-----
Q gi|254780157|r    4 APPVAIIM-GSQSDW-----KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH-----   72 (165)
Q Consensus         4 ~pkV~Ii~-GS~SD~-----~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa-----   72 (165)
                      ..||++|. |+.--.     .+..-...-|+.||++....+...|..-.-...+ +++.+.+.+++|+.+||+.-     
T Consensus       159 ~~~vglI~T~~ev~~~~i~dk~~~v~~~rl~~~G~~l~~~~~v~dd~~~ia~aI-~~~~~~ga~lvi~tgsasvDpdDvt  237 (312)
T cd03522         159 PLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAI-AEALEAGAELLILTGGASVDPDDVT  237 (312)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCCH
T ss_conf             416899996786666503452478999999974984655795589899999999-9998689939994487542886341


Q ss_pred             ------------------CHHH---HHHHCCCCEEEECCC--CCCCCCCCCHHHHH
Q ss_conf             ------------------5113---465224203661257--76667500169984
Q gi|254780157|r   73 ------------------LPGM---IAAMTSLPVLGVPII--SQTLGGIDSLLSIV  105 (165)
Q Consensus        73 ------------------Lpgv---va~~t~~PVIgVP~~--~~~~~G~dallS~v  105 (165)
                                        +||.   ++.+-..||||+|--  +...+|+|=+|.-+
T Consensus       238 P~AI~~aGg~i~~~G~PV~PGnml~l~~~~~~pViGlPGCa~s~k~n~fD~vLpRl  293 (312)
T cd03522         238 PAAIRAAGGEVIRYGMPVDPGNLLLLGYLGGVPVIGLPGCARSPKLNGFDLVLPRL  293 (312)
T ss_pred             HHHHHHCCCCEEECCCCCCCCCEEEEEEECCEEEEECCCHHCCCCCCHHHHHHHHH
T ss_conf             99999818867970576689986899985893799657210257764015102567


No 46 
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.64  E-value=4.7  Score=21.77  Aligned_cols=81  Identities=10%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             EEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--C
Q ss_conf             99995881698---999999999998099826545301038799998898765359829999726766851134652--2
Q gi|254780157|r    7 VAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--T   81 (165)
Q Consensus         7 V~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--t   81 (165)
                      ++++.-+-++-   .+.+.+.+.+++.|+  ++.+++++..+++-.++++++..++++.+|....-+..+...+.-.  .
T Consensus         2 IGvvv~~~~npff~~v~~gie~~a~~~G~--~~~i~~s~~d~~~q~~~i~~li~~~vDgiIi~p~~~~~~~~~~~~~~~~   79 (267)
T cd06322           2 IGASLLTQQHPFYIELANAMKEEAKKQKV--NLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKA   79 (267)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             89996899897999999999999997499--9999839999999999999999749999999067610106999999975


Q ss_pred             CCCEEEEC
Q ss_conf             42036612
Q gi|254780157|r   82 SLPVLGVP   89 (165)
Q Consensus        82 ~~PVIgVP   89 (165)
                      ..|||.+-
T Consensus        80 gIPvV~~d   87 (267)
T cd06322          80 GIPVITVD   87 (267)
T ss_pred             CCCEEEEE
T ss_conf             99789983


No 47 
>pfam00781 DAGK_cat Diacylglycerol kinase catalytic domain. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The catalytic domain is assumed from the finding of bacterial homologues. YegS is the Escherichia coli protein in this family whose crystal structure reveals an active site in the inter-domain cleft formed by four conserved sequence motifs, revealing a novel metal-binding site. The residues of this site are conserved across the family.
Probab=82.53  E-value=4.8  Score=21.74  Aligned_cols=83  Identities=13%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHH-HCCCEEEEEEECCCCCCHHHHHHHCCCCE-----EEECCCCCC
Q ss_conf             999999998099826545301038799998898765-35982999972676685113465224203-----661257766
Q gi|254780157|r   21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNAR-FEGFKLIIAGAGGAAHLPGMIAAMTSLPV-----LGVPIISQT   94 (165)
Q Consensus        21 ~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~-~~~~~viIa~AG~aaaLpgvva~~t~~PV-----IgVP~~~~~   94 (165)
                      +++...|++.++++++....- +.+.+  ++.+... ....+. |.++|+.+.+..++.++...+.     +|+=|.+. 
T Consensus        18 ~~i~~~l~~~~~~~~~~~t~~-~~~~~--~~~~~~~~~~~~d~-vv~~GGDGTv~evvngl~~~~~~~~~plgiIP~GT-   92 (127)
T pfam00781        18 DKVLEKLRKALNEAQVFETEE-GGPAV--ALELARALGDFKDL-VVVAGGDGTVNEVLNGLAGREDRLKPPLGIIPLGT-   92 (127)
T ss_pred             HHHHHHHHHCCCCEEEEECCC-CCHHH--HHHHHHHHCCCCCE-EEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCC-
T ss_conf             999999998799759999898-88799--99999852358888-99988975799999999746887789789924876-


Q ss_pred             CCCCCCHHHHHHCCCCC
Q ss_conf             67500169984035698
Q gi|254780157|r   95 LGGIDSLLSIVQMPAGV  111 (165)
Q Consensus        95 ~~G~dallS~vqMP~Gv  111 (165)
                        |-| +--++.+|...
T Consensus        93 --gNd-fa~~lgip~~~  106 (127)
T pfam00781        93 --GND-FARALGIPGDP  106 (127)
T ss_pred             --HHH-HHHHCCCCCCH
T ss_conf             --758-99982999999


No 48 
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein  (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions.  Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=82.19  E-value=4.9  Score=21.66  Aligned_cols=87  Identities=15%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             EEEEEECCCC-C---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH-HHHHHH
Q ss_conf             4999958816-9---8999999999998099826545301038799998898765359829999726766851-134652
Q gi|254780157|r    6 PVAIIMGSQS-D---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP-GMIAAM   80 (165)
Q Consensus         6 kV~Ii~GS~S-D---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp-gvva~~   80 (165)
                      +++++.-... .   ....+.+...+++.|..+++.+...+..+++-.+.++.+..++++.+|........++ .-.+..
T Consensus         1 ~IG~i~p~~~~~~~~~~~~~g~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~l~~~~vd~ii~~~~~~~~~~~~~~~~~   80 (269)
T cd01391           1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAA   80 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             98999638878869999999999999981997699998499999999999999997499999946887444899999997


Q ss_pred             CCCCEEEECCCC
Q ss_conf             242036612577
Q gi|254780157|r   81 TSLPVLGVPIIS   92 (165)
Q Consensus        81 t~~PVIgVP~~~   92 (165)
                      ...|||.+-...
T Consensus        81 ~~iPvv~~~~~~   92 (269)
T cd01391          81 AGIPVVSLDATA   92 (269)
T ss_pred             CCCEEEEECCCC
T ss_conf             698199967887


No 49 
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=81.82  E-value=5.1  Score=21.57  Aligned_cols=81  Identities=20%  Similarity=0.268  Sum_probs=56.5

Q ss_pred             EEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC-
Q ss_conf             499995881698---9999999999980998265453010387999988987653598299997267668511346522-
Q gi|254780157|r    6 PVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT-   81 (165)
Q Consensus         6 kV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t-   81 (165)
                      ||++++-+.+|-   .+.+.+.+.++++|+  ++.+++.+..+++..++++.+..++++.+|...-....+...+..+. 
T Consensus         1 kIgvivp~~~~pf~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~e~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~   78 (267)
T cd01536           1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANA   78 (267)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             999996899898999999999999998499--999996999999999999999975999999931584155899999998


Q ss_pred             -CCCEEEE
Q ss_conf             -4203661
Q gi|254780157|r   82 -SLPVLGV   88 (165)
Q Consensus        82 -~~PVIgV   88 (165)
                       ..||+.+
T Consensus        79 ~~iPvV~~   86 (267)
T cd01536          79 AGIPVVTV   86 (267)
T ss_pred             CCCCEEEE
T ss_conf             79969998


No 50 
>PRK10586 hypothetical protein; Provisional
Probab=81.74  E-value=4.7  Score=21.78  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=59.1

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-HHHHHHHCCC
Q ss_conf             749999588169899999999999809982654530103879999889876535982999972676685-1134652242
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL-PGMIAAMTSL   83 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL-pgvva~~t~~   83 (165)
                      .++.||.|-.+=...-+.....|+.-++.+..  -+-.=+..+..++.+..+. +.+++|++-|+..-- .-+++-...+
T Consensus        35 ~~~lii~g~~~~~~~~~~~~~sl~~~~~~~~~--f~Gecs~~ei~rl~~~~~~-~~d~IigvGGGK~iDtaK~vA~~~~~  111 (362)
T PRK10586         35 SRAVWIYGERAIAAAQPYLPPAFELPGAKHIL--FRGHCSESDVAQLAAESGD-DRQVVIGVGGGALLDTAKALARRLGL  111 (362)
T ss_pred             CCEEEEECHHHHHHHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             84699988789999988876654025856998--7894589999999997355-88789995571999999999998199


Q ss_pred             CEEEECCCCCC
Q ss_conf             03661257766
Q gi|254780157|r   84 PVLGVPIISQT   94 (165)
Q Consensus        84 PVIgVP~~~~~   94 (165)
                      |||-||+..++
T Consensus       112 pvv~vPTiASt  122 (362)
T PRK10586        112 PFVAIPTIAAT  122 (362)
T ss_pred             CEEEEECHHCC
T ss_conf             98996051105


No 51 
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=81.48  E-value=4.3  Score=22.07  Aligned_cols=104  Identities=24%  Similarity=0.311  Sum_probs=56.8

Q ss_pred             CCCCEEEEEECCCCCHH-----HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCHH
Q ss_conf             98874999958816989-----9999999999809982654530103879999889876535982-99997267668511
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWK-----IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK-LIIAGAGGAAHLPG   75 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~-----~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~-viIa~AG~aaaLpg   75 (165)
                      .|+.||+|++|+.|...     .++.+.+.|++-|.+..  -.-.-+.      ........+++ ||++.-|.-+-- |
T Consensus         2 ~~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~--~id~~~~------~~~~l~~~~~D~vf~~lHG~~GED-G   72 (304)
T PRK01372          2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAH--PIDPGED------PAAELKELGFDRVFNALHGRGGED-G   72 (304)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE--EECCCCC------HHHHHHHCCCCEEEEECCCCCCCC-H
T ss_conf             877718999367871289999999999998837599799--9828964------677875339999999068999856-4


Q ss_pred             HHHHH---CCCCEEEECCCCCCCCCCCCHHHH-HHCCCCCCCEE
Q ss_conf             34652---242036612577666750016998-40356986204
Q gi|254780157|r   76 MIAAM---TSLPVLGVPIISQTLGGIDSLLSI-VQMPAGVPVGT  115 (165)
Q Consensus        76 vva~~---t~~PVIgVP~~~~~~~G~dallS~-vqMP~Gvpvat  115 (165)
                      .+-++   ...|-.|+-+.++.+ ++|=.++- +---.|+|+.-
T Consensus        73 ~iQglLe~~~IPYtGs~~~asal-~mDK~~tK~i~~~~gI~tp~  115 (304)
T PRK01372         73 TIQGLLELLGIPYTGSGVLASAL-AMDKLRTKLVWQAAGLPTAP  115 (304)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCCCC
T ss_conf             99999998599835799899877-65389999999986999898


No 52 
>PRK06346 consensus
Probab=81.26  E-value=5.3  Score=21.45  Aligned_cols=52  Identities=21%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC
Q ss_conf             9988749999588169899999999999809982654530103879999889876535
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE   58 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~   58 (165)
                      |+++-||++|.|+.+  -+...+++.|.+.|-..-+    ..|+.+++.+..++.+..
T Consensus         1 m~l~gKv~lITGgs~--GIG~a~a~~la~~Ga~V~i----~~r~~e~~~~~~~~l~~~   52 (251)
T PRK06346          1 MKLKGKVAIVTGAAS--GMGKSIAELFAKEGAKVVV----ADLNLERAQKVVEEITSN   52 (251)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEE----EECCHHHHHHHHHHHHHC
T ss_conf             988998899947578--8999999999987998999----979899999999999963


No 53 
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=80.91  E-value=5.5  Score=21.37  Aligned_cols=83  Identities=14%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             EEEEEECCCCCH--H-HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH-HC
Q ss_conf             499995881698--9-9999999999809982654530103879999889876535982999972676685113465-22
Q gi|254780157|r    6 PVAIIMGSQSDW--K-IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA-MT   81 (165)
Q Consensus         6 kV~Ii~GS~SD~--~-~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~-~t   81 (165)
                      |+++++-|-+|-  . +.+.+.+..+++|+++++.-...+....+-.+.++++..++++.||..+.-+.+|..++.+ .-
T Consensus         1 ki~v~~~~l~npfw~~~~~Ga~~aA~e~G~~v~~~~~~~~~d~~~Qi~~ie~~i~~gvDaIii~p~d~~al~~~~~a~~a   80 (268)
T cd06306           1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAA   80 (268)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             98999578898799999999999999969979999589999999999999999983999999867986777899999986


Q ss_pred             CCCEEEE
Q ss_conf             4203661
Q gi|254780157|r   82 SLPVLGV   88 (165)
Q Consensus        82 ~~PVIgV   88 (165)
                      ..|||.+
T Consensus        81 gIPVV~~   87 (268)
T cd06306          81 SIPVIAL   87 (268)
T ss_pred             CCEEEEE
T ss_conf             9829999


No 54 
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=80.82  E-value=5.5  Score=21.35  Aligned_cols=82  Identities=17%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             EEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             499995881698---99999999999809982654530103879999889876535982999972676685113465224
Q gi|254780157|r    6 PVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus         6 kV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      ||+++..+.++-   ...+.+.+..+++|+  ++.+..+.-.+.+-.+.++++..++++.||...--..++...+.....
T Consensus         1 kIG~~~~~~~npf~~~~~~g~~~~a~~~G~--~v~~~~~~~d~~~Q~~~i~~~i~~~vd~iii~~~d~~~~~~~~~~a~~   78 (282)
T cd06318           1 KIGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA   78 (282)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             989994899897999999999999997299--999976999999999999999976998799811680566999999997


Q ss_pred             --CCEEEEC
Q ss_conf             --2036612
Q gi|254780157|r   83 --LPVLGVP   89 (165)
Q Consensus        83 --~PVIgVP   89 (165)
                        .|||.+=
T Consensus        79 aGIPVv~~d   87 (282)
T cd06318          79 AGVPVVVVD   87 (282)
T ss_pred             CCCCEEEEC
T ss_conf             799889973


No 55 
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily.  Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=80.66  E-value=5.6  Score=21.32  Aligned_cols=84  Identities=13%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--
Q ss_conf             4999958816989---99999999998099826545301038799998898765359829999726766851134652--
Q gi|254780157|r    6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--   80 (165)
Q Consensus         6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--   80 (165)
                      |++++.-+-++--   +.+.+.+..+++|+...+........+++-.++++++..++++.+|....-..++...+...  
T Consensus         1 kIGviv~~~~npf~~~~~~g~e~~a~~~G~~v~v~~~~~~~d~~~q~~~i~~~i~~~vdgii~~p~~~~~~~~~~~~a~~   80 (275)
T cd06320           1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK   80 (275)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             98999489988899999999999999749989999689975899999999999974998798767880656999999986


Q ss_pred             CCCCEEEEC
Q ss_conf             242036612
Q gi|254780157|r   81 TSLPVLGVP   89 (165)
Q Consensus        81 t~~PVIgVP   89 (165)
                      .-.|||.+-
T Consensus        81 ~gIpvv~~d   89 (275)
T cd06320          81 KGIPVVNVN   89 (275)
T ss_pred             CCCEEEEEC
T ss_conf             799099926


No 56 
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=80.42  E-value=5.7  Score=21.27  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             EEEEE-CCCCCHHHHHHH---HHHH-HHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             99995-881698999999---9999-98099826545301038799998898765359829999726
Q gi|254780157|r    7 VAIIM-GSQSDWKIMKYA---ADML-DTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG   68 (165)
Q Consensus         7 V~Ii~-GS~SD~~~~~~a---~~~L-~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG   68 (165)
                      |++++ |+..|...-+-+   .+.+ +++|++....- +.  .++..++.++.+.++++++||+...
T Consensus         2 va~i~~g~~~D~s~n~~~~~g~~~~~~~~g~~~~~~e-~~--~~~d~~~~~~~~~~~g~~lIi~~g~   65 (260)
T cd06304           2 VALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVE-SV--EDADYEPNLRQLAAQGYDLIFGVGF   65 (260)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEE-CC--CHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf             8999828999876889999999999998698599990-69--9899999999999879999999367


No 57 
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=80.19  E-value=5.8  Score=21.22  Aligned_cols=81  Identities=15%  Similarity=0.265  Sum_probs=60.4

Q ss_pred             EEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--C
Q ss_conf             99995881698---999999999998099826545301038799998898765359829999726766851134652--2
Q gi|254780157|r    7 VAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--T   81 (165)
Q Consensus         7 V~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--t   81 (165)
                      |+++.-+-+|-   .+.+.+...++++|  |.+.+...+..+++..++++.+..++++.+|...-.+.++...+.-.  .
T Consensus         2 IGvivp~l~npff~~~~~gi~~~a~~~G--y~~~i~~s~~~~~~e~~~i~~l~~~~vdgiI~~p~~~~~~~~~i~~~~~~   79 (268)
T cd06323           2 IGLSVSTLNNPFFVTLKDGAQKEAKELG--YELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA   79 (268)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHC
T ss_conf             8999888979999999999999999759--98999819999999999999999649998997565421246999999976


Q ss_pred             CCCEEEEC
Q ss_conf             42036612
Q gi|254780157|r   82 SLPVLGVP   89 (165)
Q Consensus        82 ~~PVIgVP   89 (165)
                      ..|||.+=
T Consensus        80 ~iPvV~id   87 (268)
T cd06323          80 GIPVFTID   87 (268)
T ss_pred             CCCEEEEC
T ss_conf             99689963


No 58 
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.75  E-value=6.4  Score=20.93  Aligned_cols=57  Identities=23%  Similarity=0.236  Sum_probs=38.0

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             998874999958816989999999999980998265453010387999988987653598299
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI   63 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~vi   63 (165)
                      |+++-||++|.|+.+  -+...++..|-+.|...    +-.+|+++++.+..++.+.++.+++
T Consensus         2 ~~L~gK~alVTGgs~--GiG~aia~~la~~Ga~V----~i~~~~~~~~~~~~~~i~~~g~~~~   58 (250)
T PRK07774          2 FDFDDKVAIVTGAAG--GIGQAYAEALAREGASV----VVADINAEGAERVAKQIVADGGTAI   58 (250)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEE----EEEECCHHHHHHHHHHHHHCCCEEE
T ss_conf             077998899979768--89999999999869999----9997988999999999985598499


No 59 
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.69  E-value=6.4  Score=20.92  Aligned_cols=55  Identities=27%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE
Q ss_conf             9988749999588169899999999999809982654530103879999889876535982
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK   61 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~   61 (165)
                      |.++-||++|.|+.+  -+...+++.|-+.|....+    ..|+.+++.+..++.+..+.+
T Consensus         1 M~L~gK~alVTG~s~--GIG~aia~~la~~Ga~V~i----~~r~~~~l~~~~~~i~~~g~~   55 (258)
T PRK07890          1 MLLKDKVVVVSGVGP--GLGTTLAVRAAREGADVVL----AARTAERLDEVAKQIDDLGRR   55 (258)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEE----EECCHHHHHHHHHHHHHCCCC
T ss_conf             968998899968565--8999999999987998999----979899999999999964995


No 60 
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=76.61  E-value=7.3  Score=20.54  Aligned_cols=59  Identities=22%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             EEEEEE--CCCCCHHHHHHHHHHH----HHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             499995--8816989999999999----9809982654530103879999889876535982999972
Q gi|254780157|r    6 PVAIIM--GSQSDWKIMKYAADML----DTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA   67 (165)
Q Consensus         6 kV~Ii~--GS~SD~~~~~~a~~~L----~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A   67 (165)
                      ||++|.  |+-.|...-+.+.+-+    +++|++....-.   .++....+-++.+-.+++++||+..
T Consensus         1 kva~i~d~G~i~D~s~Nqs~~eG~~~~~~~~g~~~~~~e~---~~~~d~~~~~~~~~~~g~~lIi~~g   65 (265)
T cd06354           1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVES---KSDADYEPNLEQLADAGYDLIVGVG   65 (265)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             9899977889998878899999999999986993899937---9989999999999987999999917


No 61 
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=76.58  E-value=7.4  Score=20.54  Aligned_cols=108  Identities=20%  Similarity=0.373  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCE--EEEC
Q ss_conf             88169899999999999809982654530103879999889876535982999972676685113465224203--6612
Q gi|254780157|r   12 GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPV--LGVP   89 (165)
Q Consensus        12 GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PV--IgVP   89 (165)
                      |-.......++..+.|++.|.+++.++....   ....++++++-.++++.+| ++|+.+-+.-|+.++...+.  +|+=
T Consensus        14 G~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~vi-a~GGDGTv~evingl~~~~~~~Lgil   89 (301)
T COG1597          14 GKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVI-AAGGDGTVNEVANGLAGTDDPPLGIL   89 (301)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCEEEEEEECCC---HHHHHHHHHHHHCCCCEEE-EECCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf             6500577799999999972864699970375---2299999998645898899-96348879999988733799817993


Q ss_pred             CCCC-C-----CCC-CCCHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf             5776-6-----675-00169984035698620443167531
Q gi|254780157|r   90 IISQ-T-----LGG-IDSLLSIVQMPAGVPVGTMAIGQSGA  123 (165)
Q Consensus        90 ~~~~-~-----~~G-~dallS~vqMP~Gvpvatv~vg~~~~  123 (165)
                      |.+. +     ++- .|.+...++.-..-..-.+.++..|+
T Consensus        90 P~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg~~~~  130 (301)
T COG1597          90 PGGTANDFARALGIPLDDIEAALELIKSGETRKVDLGQVNG  130 (301)
T ss_pred             CCCCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEHHHCCC
T ss_conf             48657788998599945499999998639869975343389


No 62 
>TIGR02638 lactal_redase lactaldehyde reductase; InterPro: IPR013460    The proteins in this entry form a distinct clade of iron-containing alcohol dehydrogenases. The genes encoding these proteins are generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in the production of lactaldehydes, which are reduced by these enzymes to 1,2 propanediol . These enzymes are also sometimes called 1,2 propanediol oxidoreductases. They are active under anaerobic conditions in E. coli, while being inactivated by reactive oxygen species under aerobic conditions . Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase..
Probab=76.41  E-value=7.2  Score=20.61  Aligned_cols=101  Identities=21%  Similarity=0.352  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCC--------------------CCHH
Q ss_conf             899999999999809982654-5301038799998898765359829999726766--------------------8511
Q gi|254780157|r   17 WKIMKYAADMLDTLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAA--------------------HLPG   75 (165)
Q Consensus        17 ~~~~~~a~~~L~~~gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aa--------------------aLpg   75 (165)
                      +.++++..+.||+++|+|+++ =.-+==|-+-+.+=+..+++.|++.|||+-|+|-                    .|-|
T Consensus        43 ~gv~~~v~~~Ld~~~~~Y~lfd~v~pNPT~~~Vk~G~a~~~~sgaDy~iAiGGGSp~DtAKAIgIi~~NPeF~d~~SLeG  122 (380)
T TIGR02638        43 FGVADKVTELLDEAKIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIVNNPEFSDVVSLEG  122 (380)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCEEECCCCCCCCCCCCCC
T ss_conf             65799999998622788346257788975899998999986058977998568974000303200002838455110457


Q ss_pred             HHHHHC-CCCEEEECCCCCC------------------CCC-----------CCCHHHHHHCCCCCCCEEEECCCC
Q ss_conf             346522-4203661257766------------------675-----------001699840356986204431675
Q gi|254780157|r   76 MIAAMT-SLPVLGVPIISQT------------------LGG-----------IDSLLSIVQMPAGVPVGTMAIGQS  121 (165)
Q Consensus        76 vva~~t-~~PVIgVP~~~~~------------------~~G-----------~dallS~vqMP~Gvpvatv~vg~~  121 (165)
                      |-.-.. ..|.|++|+-.|+                  +.=           .| =-=|.+||+++.=+|   |.|
T Consensus       123 va~tk~~~vP~~AipTTaGTAAEvTiNyVItDE~~~~K~VcvDp~~IP~vAv~D-~~~M~~mP~~ltAAT---GmD  194 (380)
T TIGR02638       123 VADTKKKGVPIIAIPTTAGTAAEVTINYVITDEENKRKFVCVDPHDIPDVAVVD-AELMLSMPKSLTAAT---GMD  194 (380)
T ss_pred             CCCCCCCCCCEEECCCCCCHHHHHHHCCEEECCCCCEEEEEECCCCCCEEEEEC-HHHHHHCCHHHHHHH---CHH
T ss_conf             553125666158668875314442215147624545126887567678066547-377621550000000---201


No 63 
>PRK06949 short chain dehydrogenase; Provisional
Probab=76.02  E-value=7.6  Score=20.44  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             9988749999588169899999999999809------------------------9826545301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      |+++-||++|.|+.+  -+...++..|.+-|                        .+... +..=-+.++.+.+++++..
T Consensus         5 ~~L~gKvalVTGas~--GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~-~~~Dv~~~~~v~~~v~~~~   81 (258)
T PRK06949          5 INLEGKVALVTGASS--GLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAEGGAAHV-VSLDVTDYQSIKAAVAHAE   81 (258)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHH
T ss_conf             878999899958577--9999999999987999999969889999999999965992899-9826899999999999999


Q ss_pred             H--CCCEEEEEEECCC
Q ss_conf             3--5982999972676
Q gi|254780157|r   57 F--EGFKLIIAGAGGA   70 (165)
Q Consensus        57 ~--~~~~viIa~AG~a   70 (165)
                      +  ..++++|..||..
T Consensus        82 ~~~G~iDiLVnnAG~~   97 (258)
T PRK06949         82 TEAGTIDILVNNSGVS   97 (258)
T ss_pred             HHHCCCCEEEECCCCC
T ss_conf             9849998999899889


No 64 
>PRK07454 short chain dehydrogenase; Provisional
Probab=75.57  E-value=7.8  Score=20.36  Aligned_cols=67  Identities=24%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             CCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCC------------------------EEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             9988-74999958816989999999999980998------------------------2654530103879999889876
Q gi|254780157|r    1 MNIA-PPVAIIMGSQSDWKIMKYAADMLDTLGID------------------------YEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~-pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~------------------------~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |+|+ .||++|.|..|-+  ...++..|.+-|..                        .....+ =-..++.+.+.++..
T Consensus         1 m~~~~mKvalITGas~GI--G~a~A~~la~~G~~V~l~~R~~~~l~~~~~e~~~~g~~~~~~~~-Dvt~~~~v~~~~~~~   77 (241)
T PRK07454          1 MSLNSMPTALITGASRGI--GKATALAFAKAGWDLALVARSQDALEALAEELRSTGVKVAAYSI-DLSNPEAIAPGIAEL   77 (241)
T ss_pred             CCCCCCCEEEECCCCCHH--HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE-ECCCHHHHHHHHHHH
T ss_conf             998999889991758789--99999999987998999989999999999999965992899995-189999999999999


Q ss_pred             HH--CCCEEEEEEECCC
Q ss_conf             53--5982999972676
Q gi|254780157|r   56 RF--EGFKLIIAGAGGA   70 (165)
Q Consensus        56 ~~--~~~~viIa~AG~a   70 (165)
                      .+  ..++++|..||..
T Consensus        78 ~~~~G~iDiLVnNAG~~   94 (241)
T PRK07454         78 LEQFGCPSVLINNAGAA   94 (241)
T ss_pred             HHHCCCCCEEEECCCCC
T ss_conf             99759988999889889


No 65 
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.39  E-value=7.9  Score=20.33  Aligned_cols=81  Identities=19%  Similarity=0.196  Sum_probs=59.7

Q ss_pred             EEEEEECCCCCHHH----HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH--H
Q ss_conf             49999588169899----99999999980998265453010387999988987653598299997267668511346--5
Q gi|254780157|r    6 PVAIIMGSQSDWKI----MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA--A   79 (165)
Q Consensus         6 kV~Ii~GS~SD~~~----~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva--~   79 (165)
                      |++++.-+-++ |+    .+.+.+..+++|+  ++.+.+++.++++-.+.++++..++++.||...--..++...+.  .
T Consensus         1 kIg~vv~~~~n-pF~~~~~~G~~~~a~~~G~--~~~~~~~~~d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~~~~~~a~   77 (277)
T cd06319           1 QIAYIVSDLRI-PFWQIMGRGVKSKAKALGY--DAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAA   77 (277)
T ss_pred             CEEEEECCCCC-HHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf             98999189998-6999999999999997299--89997699999999999999996699879964777411099999999


Q ss_pred             HCCCCEEEEC
Q ss_conf             2242036612
Q gi|254780157|r   80 MTSLPVLGVP   89 (165)
Q Consensus        80 ~t~~PVIgVP   89 (165)
                      ....|||-+-
T Consensus        78 ~~gIPvv~~d   87 (277)
T cd06319          78 QAKIPVVIAD   87 (277)
T ss_pred             HCCCCEEEEE
T ss_conf             7699789986


No 66 
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=75.05  E-value=6.8  Score=20.75  Aligned_cols=55  Identities=15%  Similarity=0.069  Sum_probs=47.0

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCC-CCEEEEEEEHHCCHHHHHHHHHHHHHC
Q ss_conf             8749999588169899999999999809-982654530103879999889876535
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLG-IDYEARIISAHRTPDRLIEFAKNARFE   58 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~g-I~~~~~V~SAHR~p~~l~~~~~~~~~~   58 (165)
                      +-||.+|.|---|.-.|......+++.+ +++.+-+.+-||..+-+..|.+..+.+
T Consensus         3 ~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~   58 (383)
T COG0381           3 MLKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIR   58 (383)
T ss_pred             CEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             63899998558999987099999985899735999706654277899999982898


No 67 
>PRK13057 putative lipid kinase; Reviewed
Probab=74.94  E-value=8.1  Score=20.26  Aligned_cols=68  Identities=26%  Similarity=0.441  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--CCCCEEEECCC
Q ss_conf             999999999998099826545301038799998898765359829999726766851134652--24203661257
Q gi|254780157|r   18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--TSLPVLGVPII   91 (165)
Q Consensus        18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--t~~PVIgVP~~   91 (165)
                      ...+++...|++-|+++++....   .+.+..++++.. .++++++|+ +|+.+.+.-|+.++  +..| +|+=|.
T Consensus        13 ~~~~~~~~~l~~~g~~~~~~~T~---~~g~a~~~~~~~-~~~~d~vv~-~GGDGTv~ev~~gl~~~~~~-lgiiP~   82 (287)
T PRK13057         13 AALGAARAALEAAGLELVEPHPE---SPADLSEVIEAH-ADGVDLVIV-GGGDGTLNAAAPALVETGLP-LGILPL   82 (287)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECC---CHHHHHHHHHHH-HCCCCEEEE-ECCHHHHHHHHHHHCCCCCC-EEEECC
T ss_conf             31999999999879979999549---878999999998-669998999-88589999999986057983-699738


No 68 
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.51  E-value=8.3  Score=20.19  Aligned_cols=84  Identities=13%  Similarity=0.091  Sum_probs=63.5

Q ss_pred             EEEEECCCCC-H--HHHHHHHHHHHHCCCC---EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             9999588169-8--9999999999980998---26545301038799998898765359829999726766851134652
Q gi|254780157|r    7 VAIIMGSQSD-W--KIMKYAADMLDTLGID---YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         7 V~Ii~GS~SD-~--~~~~~a~~~L~~~gI~---~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      |++++.+.++ +  ...+.+....+++|..   +++.+..+...+.+-.+.++++..++++++|...--+.++..++.-.
T Consensus         2 IGv~~~~~~~~f~~~~~~~~~~~a~~~g~~~~~v~~~~~da~~D~~~Q~~~ie~lI~qgvDaIiv~p~d~~a~~~~v~~a   81 (274)
T cd06311           2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKA   81 (274)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             89993489897999999999999998276468927999718999999999999999749999999579778889999999


Q ss_pred             CC--CCEEEECC
Q ss_conf             24--20366125
Q gi|254780157|r   81 TS--LPVLGVPI   90 (165)
Q Consensus        81 t~--~PVIgVP~   90 (165)
                      ..  .|||.+=.
T Consensus        82 ~~aGIpVV~~D~   93 (274)
T cd06311          82 KKAGIFVVVVDR   93 (274)
T ss_pred             HHCCCEEEEECC
T ss_conf             986997999788


No 69 
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=73.51  E-value=8.8  Score=20.04  Aligned_cols=81  Identities=17%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             EEEEECC-CCCHH--HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--C
Q ss_conf             9999588-16989--99999999998099826545301038799998898765359829999726766851134652--2
Q gi|254780157|r    7 VAIIMGS-QSDWK--IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--T   81 (165)
Q Consensus         7 V~Ii~GS-~SD~~--~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--t   81 (165)
                      |++++.+ ++.+-  ..+.+.+.+++.|+  ++.++.++..+++-.+.++++..++++.+|...--..++...+...  .
T Consensus         2 IG~~~~~~~npf~~~~~~gie~~a~~~G~--~l~~~~~~~d~~~q~~~i~~li~~~vDgIii~p~~~~~~~~~l~~a~~a   79 (273)
T cd06309           2 VGFSQVGAESPWRTAETKSIKDAAEKRGF--DLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA   79 (273)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHC
T ss_conf             89995799997999999999999997699--8999769999999999999999759999998057654358999999974


Q ss_pred             CCCEEEEC
Q ss_conf             42036612
Q gi|254780157|r   82 SLPVLGVP   89 (165)
Q Consensus        82 ~~PVIgVP   89 (165)
                      -.|||-+=
T Consensus        80 gIPvV~~d   87 (273)
T cd06309          80 GIPVILVD   87 (273)
T ss_pred             CCCEEEEC
T ss_conf             99889982


No 70 
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.35  E-value=8.9  Score=20.01  Aligned_cols=68  Identities=16%  Similarity=0.132  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEECCCCC----------------------HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH-
Q ss_conf             9988749999588169----------------------89999999999980998265453010387999988987653-
Q gi|254780157|r    1 MNIAPPVAIIMGSQSD----------------------WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF-   57 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD----------------------~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~-   57 (165)
                      |+++-|+++|.|+.|-                      .+..+++...++++|..+....+- -+.++.+.++.+.... 
T Consensus         1 m~L~gK~~lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~D-v~~~~~v~~~~~~~~~~   79 (253)
T PRK08217          1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAQCAALGGEAEVYAAN-VTDEEDVEATFAQIAED   79 (253)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHH
T ss_conf             97899889994887789999999999879989999799999999999999659948999824-79999999999999998


Q ss_pred             -CCCEEEEEEECC
Q ss_conf             -598299997267
Q gi|254780157|r   58 -EGFKLIIAGAGG   69 (165)
Q Consensus        58 -~~~~viIa~AG~   69 (165)
                       ..++++|..||.
T Consensus        80 ~g~iD~lVnNAGi   92 (253)
T PRK08217         80 FGQLNGLINNAGI   92 (253)
T ss_pred             HCCCCEEEECCCC
T ss_conf             3998599985743


No 71 
>PRK07576 short chain dehydrogenase; Provisional
Probab=72.13  E-value=9.5  Score=19.83  Aligned_cols=53  Identities=17%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCC
Q ss_conf             99887499995881698999999999998099826545301038799998898765359
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEG   59 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~   59 (165)
                      |+.+-||++|.|+.+-  +...+++.|-+.|-.  +-+  ..|+.+++.+..++.+..+
T Consensus         4 ~~L~gK~alVTGgs~G--IG~aia~~la~~Ga~--V~i--~~r~~~~~~~~~~~l~~~~   56 (260)
T PRK07576          4 FRLAGKNVFVVGGTSG--INLGIAQAFARAGAN--VAV--ASRSQEKVDAAVAQLQQAG   56 (260)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCE--EEE--EECCHHHHHHHHHHHHHCC
T ss_conf             4238998999589619--999999999987999--999--9798899999999999539


No 72 
>PRK09701 D-allose transporter subunit; Provisional
Probab=71.75  E-value=9.6  Score=19.77  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=63.3

Q ss_pred             CCEEEEEECCCCCH--H-HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             87499995881698--9-99999999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r    4 APPVAIIMGSQSDW--K-IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~--~-~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      ..++++++-+.++-  . +.+.+.+..+++|+++++......-.+..=.+.++++..++++.||...--+.++...+..-
T Consensus        24 ~~~iavi~k~~~npf~~~~~~Ga~~aAk~~G~~v~v~~~~~~~D~~~Qi~~Ie~~I~~gvdaIii~p~d~~a~~~~i~~A  103 (311)
T PRK09701         24 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA  103 (311)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             68499996888998999999999999998699799992798789999999999999759999999189877889999999


Q ss_pred             C--CCCEEEEC
Q ss_conf             2--42036612
Q gi|254780157|r   81 T--SLPVLGVP   89 (165)
Q Consensus        81 t--~~PVIgVP   89 (165)
                      .  -.|||.+=
T Consensus       104 ~~aGIpVV~~D  114 (311)
T PRK09701        104 WKKGIYLVNLD  114 (311)
T ss_pred             HHCCCCEEECC
T ss_conf             97799189636


No 73 
>KOG3857 consensus
Probab=71.46  E-value=9.8  Score=19.73  Aligned_cols=111  Identities=21%  Similarity=0.302  Sum_probs=68.3

Q ss_pred             CEEEEEE-CCCCCHHHHHHHHHHHHHCCCCEEEEEE-EHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH-----
Q ss_conf             7499995-8816989999999999980998265453-01038799998898765359829999726766851134-----
Q gi|254780157|r    5 PPVAIIM-GSQSDWKIMKYAADMLDTLGIDYEARII-SAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI-----   77 (165)
Q Consensus         5 pkV~Ii~-GS~SD~~~~~~a~~~L~~~gI~~~~~V~-SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv-----   77 (165)
                      .|+.++. -.-+.++..+.+.+.|++-||+|+++=- -.--|-.-+.+-++.++.++.+.|+++-|+|+|-----     
T Consensus        71 Kk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~A  150 (465)
T KOG3857          71 KKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLA  150 (465)
T ss_pred             CCEEEEECCCHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             42589607774441417899999997598169724764798623499999998733665589876850455688898860


Q ss_pred             --------------------HHHCCCCEEEECCCCCCCCC----------------------------CCCHHHHHHCCC
Q ss_conf             --------------------65224203661257766675----------------------------001699840356
Q gi|254780157|r   78 --------------------AAMTSLPVLGVPIISQTLGG----------------------------IDSLLSIVQMPA  109 (165)
Q Consensus        78 --------------------a~~t~~PVIgVP~~~~~~~G----------------------------~dallS~vqMP~  109 (165)
                                          .+.--+|.|++|+-.|...-                            +--=+.|+.||+
T Consensus       151 sn~~~eflDyvg~pigk~~~~s~p~lPLiAipTTaGTgSEtT~~AI~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~  230 (465)
T KOG3857         151 SNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTTAGTGSETTRFAIIDYEELKIKMGIIDKNIKPTLAVNDPLTMLGLPP  230 (465)
T ss_pred             CCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCHHHHEEEEEECCCCCCEEEECCHHHHCCCCH
T ss_conf             28876300023786666665555556347502578766444015885333330011221024564044138377516986


Q ss_pred             CCCCEE
Q ss_conf             986204
Q gi|254780157|r  110 GVPVGT  115 (165)
Q Consensus       110 Gvpvat  115 (165)
                      .+.-+|
T Consensus       231 ~v~a~t  236 (465)
T KOG3857         231 RVTAAT  236 (465)
T ss_pred             HHHHHC
T ss_conf             776650


No 74 
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=71.27  E-value=2.1  Score=24.09  Aligned_cols=62  Identities=18%  Similarity=0.388  Sum_probs=25.4

Q ss_pred             HHHHHHCCCCEEEE--------EEEHHCCHHHHH-----HHHHHHHHCCCE-EEEEEECCCCCCHHHHHHHCCCCEE
Q ss_conf             99999809982654--------530103879999-----889876535982-9999726766851134652242036
Q gi|254780157|r   24 ADMLDTLGIDYEAR--------IISAHRTPDRLI-----EFAKNARFEGFK-LIIAGAGGAAHLPGMIAAMTSLPVL   86 (165)
Q Consensus        24 ~~~L~~~gI~~~~~--------V~SAHR~p~~l~-----~~~~~~~~~~~~-viIa~AG~aaaLpgvva~~t~~PVI   86 (165)
                      ...++.||+....+        |...|..|++..     ++.+..++++.+ +++.+|||++. .-.+.-.+-.|||
T Consensus       126 ~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~l-a~~Lq~~~gvPVI  201 (230)
T COG4126         126 EELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDL-ADQLQKAFGVPVI  201 (230)
T ss_pred             HHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH-HHHHHHHHCCCCC
T ss_conf             999986373234553233798701036976789999999999986532888899858217779-9999997199846


No 75 
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.27  E-value=10  Score=19.57  Aligned_cols=30  Identities=27%  Similarity=0.320  Sum_probs=22.7

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99887499995881698999999999998099
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      |+++-|+++|.|+.+.+  ...+++.|-+.|.
T Consensus         2 m~l~gK~alITGgs~GI--G~aia~~la~~G~   31 (250)
T PRK07231          2 MRLEGKVAIVTGAGSGF--GEGIARRFAAEGA   31 (250)
T ss_pred             CCCCCCEEEEECCCCHH--HHHHHHHHHHCCC
T ss_conf             07699889993888689--9999999998799


No 76 
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.23  E-value=4.8  Score=21.76  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=43.1

Q ss_pred             EEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH-HHCC
Q ss_conf             4999958816--989999999999980998265453010387999988987653598299997267668511346-5224
Q gi|254780157|r    6 PVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA-AMTS   82 (165)
Q Consensus         6 kV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva-~~t~   82 (165)
                      ||+|+.-...  -...+++..+.|++.|+++-+.--.+...+..-..-........++.+|+. |+.+.+-.+.. +...
T Consensus         2 KigIv~n~~k~~a~~~a~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l-GGDGT~L~a~~~~~~~   80 (278)
T PRK03708          2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSDTYEHLPQFSEEDVLPLEEFDVDFILAI-GGDGTILRIEHKTKKE   80 (278)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEE-CCCHHHHHHHHHCCCC
T ss_conf             999992189989999999999999988998999747865666555567675435787899998-7868999999964789


Q ss_pred             CCEEEECC
Q ss_conf             20366125
Q gi|254780157|r   83 LPVLGVPI   90 (165)
Q Consensus        83 ~PVIgVP~   90 (165)
                      .|++|+-.
T Consensus        81 iPilGiN~   88 (278)
T PRK03708         81 IPILSINM   88 (278)
T ss_pred             CCEEEEEC
T ss_conf             98898835


No 77 
>PRK06940 short chain dehydrogenase; Provisional
Probab=70.05  E-value=10  Score=19.53  Aligned_cols=52  Identities=21%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE
Q ss_conf             988749999588169899999999999809982654530103879999889876535982
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK   61 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~   61 (165)
                      +++.||+|+.|| |  -+...+++.|.. |-    +|.-..|+.+++.+..++.+..+.+
T Consensus         2 rL~~kV~v~tGa-~--GIG~aiA~~la~-Ga----~vvi~~~~~~~l~~~~~~l~~~g~~   53 (277)
T PRK06940          2 NMSKEVVVVIGA-G--GMGQAIARRVGS-GK----TVLLADYNEENLQAVARTLREAGFD   53 (277)
T ss_pred             CCCCCEEEECCC-C--HHHHHHHHHHHH-CC----EEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf             989929999781-6--999999999981-99----8999989889999999998722882


No 78 
>PRK03202 6-phosphofructokinase; Provisional
Probab=69.75  E-value=11  Score=19.49  Aligned_cols=87  Identities=14%  Similarity=0.224  Sum_probs=54.4

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHH----CCCCEE-------------E----------------EEEEHHC-----C
Q ss_conf             887499995881698999999999998----099826-------------5----------------4530103-----8
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDT----LGIDYE-------------A----------------RIISAHR-----T   44 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~----~gI~~~-------------~----------------~V~SAHR-----~   44 (165)
                      |.++++|+.++ -|-|-++.+...+-+    .|++.-             +                .++.-.|     +
T Consensus         1 ~~kriaIltsG-G~~pGmNa~ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LgtsR~~~~~~   79 (323)
T PRK03202          1 MMKKIGVLTSG-GDAPGMNAAIRGVVRTAISEGLEVYGIYNGYLGLLEGDIIDLDRASVSDLINRGGTALGSARYPEFKL   79 (323)
T ss_pred             CCCEEEEECCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCEEECCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             98669999368-88677899999999999978999999916778864898576999999999847986742048887778


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--HCCCCEEEECCC
Q ss_conf             79999889876535982999972676685113465--224203661257
Q gi|254780157|r   45 PDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--MTSLPVLGVPII   91 (165)
Q Consensus        45 p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--~t~~PVIgVP~~   91 (165)
                      ++...+..++++..+++.+|.+-| .+.+-++-.-  .-..||||+|-.
T Consensus        80 ~~~~~~~~~~l~~~~Id~Li~IGG-dgS~~~a~~L~~~~~i~vigIPkT  127 (323)
T PRK03202         80 EEGRAKAIENLKKHGIDALVVIGG-DGSYDGAKKLSEEYGIPCIGIPKT  127 (323)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             889999999999829999999379-469999999984379748972144


No 79 
>PRK07814 short chain dehydrogenase; Provisional
Probab=69.69  E-value=11  Score=19.49  Aligned_cols=66  Identities=15%  Similarity=0.201  Sum_probs=33.5

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHHH
Q ss_conf             988749999588169899999999999809------------------------98265453010387999988987653
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNARF   57 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~~   57 (165)
                      +++-||++|.|+.+-  +...++..|.+.|                        ..+....+ =-+.++.+.+++++..+
T Consensus         7 ~L~gKvalITGgs~G--IG~aia~~la~~Ga~V~i~~~~~~~l~~~~~~i~~~g~~~~~~~~-Dv~~~~~v~~~v~~~~~   83 (263)
T PRK07814          7 RLDGQVAVVTGAGRG--LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAA-DLAHPEATAGLAGQAVE   83 (263)
T ss_pred             CCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHHHHHH
T ss_conf             899998999589668--999999999987998999969899999999999852992899981-58999999999999999


Q ss_pred             --CCCEEEEEEECCC
Q ss_conf             --5982999972676
Q gi|254780157|r   58 --EGFKLIIAGAGGA   70 (165)
Q Consensus        58 --~~~~viIa~AG~a   70 (165)
                        ..++++|.-||..
T Consensus        84 ~~G~iDiLVnNAg~~   98 (263)
T PRK07814         84 AFGRLDIVVNNVGGT   98 (263)
T ss_pred             HHCCCCEEEECCCCC
T ss_conf             829988999898667


No 80 
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=68.99  E-value=11  Score=19.39  Aligned_cols=53  Identities=23%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCC
Q ss_conf             99887499995881698999999999998099826545301038799998898765359
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEG   59 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~   59 (165)
                      ++++-|+++|.|+.+-  +...+++.|-+.|...  -+  .-|+++++.+..++.+..+
T Consensus        10 ~~L~gK~alITGgs~G--IG~~ia~~la~~Ga~V--~i--~~r~~~~~~~~~~~l~~~g   62 (259)
T PRK06124         10 FSLAGQVALVTGSARG--LGLEIARALAEAGAHV--LV--NGRNAARVEAAVAALRAAG   62 (259)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEE--EE--EECCHHHHHHHHHHHHHCC
T ss_conf             0999998999286748--9999999999879999--99--9698899999999999659


No 81 
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea.  Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=68.54  E-value=11  Score=19.33  Aligned_cols=128  Identities=13%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             EEEEEE-CCCCCHHHHHHHHHHHH----HCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHHHHH
Q ss_conf             499995-88169899999999999----8099826545301038799998898765359829999726-76685113465
Q gi|254780157|r    6 PVAIIM-GSQSDWKIMKYAADMLD----TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG-GAAHLPGMIAA   79 (165)
Q Consensus         6 kV~Ii~-GS~SD~~~~~~a~~~L~----~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG-~aaaLpgvva~   79 (165)
                      ||++++ |+-.|...-+.+.+-++    ++|+++.+.- +. .+++..++.++.+.++++++||+... +..++.-+-.-
T Consensus         1 KVa~l~~G~~~D~sfn~~~~~g~~~~~~~~g~~~~~~e-~~-~~~~~~~~~l~~~~~~g~dlIi~~g~~~~~~~~~vA~~   78 (258)
T cd06353           1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVE-NV-PEGADAERVLRELAAQGYDLIFGTSFGFMDAALKVAKE   78 (258)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEE-CC-CCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHH
T ss_conf             98999934999766889999999999998598699997-79-98789999999999759989999445766999999998


Q ss_pred             HCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---------CCHHHHHHHHHHHH
Q ss_conf             224203661257766675001699840356986204431675312289999999706---------99999999999999
Q gi|254780157|r   80 MTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILAL---------DDKELTDRLNEWRT  150 (165)
Q Consensus        80 ~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~---------~d~~i~~kl~~~r~  150 (165)
                      +   |      +.. |.-.|+.    .-++.+-..+... ..++|=|+++|+.+--.         ..|.+..-+..|.+
T Consensus        79 y---P------d~~-F~~~~~~----~~~~Nv~~~~~~~-~e~~ylaG~~Aa~~tkt~kVG~Vgg~~~p~~~~~~~gf~~  143 (258)
T cd06353          79 Y---P------DVK-FEHCSGY----KTAPNVGSYFARI-YEGRYLAGVVAGKMTKTNKVGYVAAFPIPEVVRGINAFAL  143 (258)
T ss_pred             C---C------CCE-EEEECCC----CCCCCEEEEECCC-CHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             8---9------988-9993488----6888747997231-0115799999998478984899778174788988999999


No 82 
>PRK12939 short chain dehydrogenase; Provisional
Probab=68.21  E-value=11  Score=19.29  Aligned_cols=66  Identities=20%  Similarity=0.201  Sum_probs=33.7

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHHH
Q ss_conf             988749999588169899999999999809------------------------98265453010387999988987653
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNARF   57 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~~   57 (165)
                      +++-||++|.|+.+  -+...+++.|-+.|                        .++....+ =-..++.+.+++++..+
T Consensus         4 ~L~~KvalVTGgs~--GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~-Dv~~~~~~~~~~~~~~~   80 (250)
T PRK12939          4 SLAGKRALVTGAAR--GLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA-DLADPASVQRFFDAAAA   80 (250)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEE-CCCCHHHHHHHHHHHHH
T ss_conf             99998799958366--8999999999987999999969889999999999955990999992-48999999999999999


Q ss_pred             --CCCEEEEEEECCC
Q ss_conf             --5982999972676
Q gi|254780157|r   58 --EGFKLIIAGAGGA   70 (165)
Q Consensus        58 --~~~~viIa~AG~a   70 (165)
                        .+++++|-.||..
T Consensus        81 ~~g~iDiLVNNAG~~   95 (250)
T PRK12939         81 ALGGLDGLVNNAGIT   95 (250)
T ss_pred             HCCCCCEEEECCCCC
T ss_conf             749997999887789


No 83 
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=68.05  E-value=12  Score=19.27  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             EEEEECCCCCHHHH----HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--
Q ss_conf             99995881698999----999999998099826545301038799998898765359829999726766851134652--
Q gi|254780157|r    7 VAIIMGSQSDWKIM----KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--   80 (165)
Q Consensus         7 V~Ii~GS~SD~~~~----~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--   80 (165)
                      |++++.+-++ |+.    +.+.+..++++ .+++.+..++-.+.+-.+.++++..++++.+|...--+.++...+.-.  
T Consensus         2 IGv~~~~~~n-pf~~~~~~gie~~A~~~~-g~~~~v~da~~d~~~Q~~~ie~li~~~vD~iiv~p~d~~~~~~~l~~a~~   79 (270)
T cd06308           2 IGFSQCNLAD-PWRAAMNDEIQREASNYP-DVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYR   79 (270)
T ss_pred             EEEEECCCCC-HHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             8999379989-799999999999999759-97899967989999999999999984999999964885200899999998


Q ss_pred             CCCCEEEEC
Q ss_conf             242036612
Q gi|254780157|r   81 TSLPVLGVP   89 (165)
Q Consensus        81 t~~PVIgVP   89 (165)
                      .-.|||.+=
T Consensus        80 agIPVV~~d   88 (270)
T cd06308          80 AGIPVILLD   88 (270)
T ss_pred             CCCCEEEEC
T ss_conf             599199945


No 84 
>PRK08862 short chain dehydrogenase; Provisional
Probab=67.79  E-value=12  Score=19.24  Aligned_cols=30  Identities=20%  Similarity=0.280  Sum_probs=20.9

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99887499995881698999999999998099
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      |+++-||++|.|+.|-  +...++..|.+.|-
T Consensus         1 Mdlk~Kv~lITGas~G--IG~aiA~~~A~~Ga   30 (227)
T PRK08862          1 MDIKNSIILITSAGSV--LGRTISCHFARLGA   30 (227)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCC
T ss_conf             9999999999798879--99999999998799


No 85 
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=67.51  E-value=12  Score=19.20  Aligned_cols=85  Identities=12%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             CCEEEEEECCCCCHHH--HH-HHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             8749999588169899--99-99999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r    4 APPVAIIMGSQSDWKI--MK-YAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~--~~-~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      ..+|++.|.+.+.--+  ++ ...+..++.|++  +.+..|.-.+..=.+-++++..++++++|...--+.++..++..-
T Consensus        25 ~~~IGv~~~~~~~~~~~~~~~~~~~~Ake~G~~--v~v~dA~~D~~~Qi~qIe~~I~qgvdaIiv~p~D~~al~~~v~~A  102 (330)
T PRK10355         25 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAK--VFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEA  102 (330)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             867999906888868999999999999975998--999718999899999999999859999999699878889999999


Q ss_pred             --CCCCEEEECC
Q ss_conf             --2420366125
Q gi|254780157|r   81 --TSLPVLGVPI   90 (165)
Q Consensus        81 --t~~PVIgVP~   90 (165)
                        --.|||.+=.
T Consensus       103 ~~aGIPVI~~D~  114 (330)
T PRK10355        103 KQEGIKVLAYDR  114 (330)
T ss_pred             HHCCCEEEEECC
T ss_conf             987994999578


No 86 
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=66.59  E-value=12  Score=19.08  Aligned_cols=89  Identities=18%  Similarity=0.225  Sum_probs=60.7

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---HCCHHHHH----HHHHHHHHCCCE-EEEEEECCCCCCH
Q ss_conf             887499995881698999999999998099826545301---03879999----889876535982-9999726766851
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---HRTPDRLI----EFAKNARFEGFK-LIIAGAGGAAHLP   74 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l~----~~~~~~~~~~~~-viIa~AG~aaaLp   74 (165)
                      .+++++|+=.+---+.+.+++.+-|-.-.+=|--.-+..   -|+++.+.    ++++....++++ ++|||.-.++.--
T Consensus         4 ~~~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al   83 (269)
T COG0796           4 PQPPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVAL   83 (269)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf             66818999789870899999999789986899814778999989999999999999999997299889996651789999


Q ss_pred             HHHHHHCCCCEEEECCC
Q ss_conf             13465224203661257
Q gi|254780157|r   75 GMIAAMTSLPVLGVPII   91 (165)
Q Consensus        75 gvva~~t~~PVIgVP~~   91 (165)
                      --+-...+.|||||=|.
T Consensus        84 ~~LR~~~~iPVvGviPa  100 (269)
T COG0796          84 EDLREKFDIPVVGVIPA  100 (269)
T ss_pred             HHHHHHCCCCEEEECCC
T ss_conf             99998679998995315


No 87 
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.46  E-value=12  Score=19.07  Aligned_cols=67  Identities=18%  Similarity=0.094  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC-------------------------CCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             9988749999588169899999999999809-------------------------982654530103879999889876
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLG-------------------------IDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g-------------------------I~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |+.+.||++|.|+.+-  +...+++.|-+-|                         .++....+- -..++...++++..
T Consensus         1 M~~~~KValVTGgs~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~D-v~~~~~~~~~~~~~   77 (259)
T PRK12745          1 MKSTRPVALVTGGRRG--IGLGIALALAAGGFDLAINDRPDAEKLAATQQELRALGVEVIFFPAD-VADLSAHEATLDAA   77 (259)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHH
T ss_conf             9999999999686789--99999999998799899997986678999999998449948999846-89999999999999


Q ss_pred             HH--CCCEEEEEEECCC
Q ss_conf             53--5982999972676
Q gi|254780157|r   56 RF--EGFKLIIAGAGGA   70 (165)
Q Consensus        56 ~~--~~~~viIa~AG~a   70 (165)
                      .+  ..++++|--||..
T Consensus        78 ~~~fg~iDiLVNNAG~~   94 (259)
T PRK12745         78 QDAWGRIDCLVNNAGVG   94 (259)
T ss_pred             HHHHCCCCEEEECCCCC
T ss_conf             99829988999847536


No 88 
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=66.34  E-value=12  Score=19.05  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=36.0

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC------------------------CEEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             99887499995881698999999999998099------------------------826545301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI------------------------DYEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI------------------------~~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      ++++-||++|.|+.+-  +...+++.|.+.|-                        ... .+..=-..++.+.+..+...
T Consensus         6 f~L~gKvalVTGas~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~-~~~~Dvtd~~~v~~~~~~~~   82 (278)
T PRK08277          6 FSLKGKVAVITGGGGV--LGGAMAKELARAGAKVAILDRNQEKAEAVVEEIKANGGEAI-ALKADVLDKESLEQARQQIL   82 (278)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHHHHHHHH
T ss_conf             3889998999586748--99999999998799899997988999999999984599099-99824899999999999999


Q ss_pred             H--CCCEEEEEEECC
Q ss_conf             3--598299997267
Q gi|254780157|r   57 F--EGFKLIIAGAGG   69 (165)
Q Consensus        57 ~--~~~~viIa~AG~   69 (165)
                      +  ..++++|-.||.
T Consensus        83 ~~~G~iDiLVNnAG~   97 (278)
T PRK08277         83 KDFGRCDILINGAGG   97 (278)
T ss_pred             HHHCCCCEEEECCCC
T ss_conf             984998889988987


No 89 
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=65.53  E-value=13  Score=18.95  Aligned_cols=74  Identities=18%  Similarity=0.323  Sum_probs=47.5

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEE
Q ss_conf             99588169899999999999809982654530103879999889876535982999972676685113465224203661
Q gi|254780157|r    9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGV   88 (165)
Q Consensus         9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgV   88 (165)
                      |++=|.++=|...++...|+..||+|...-..-.....++.++++..                      .+..+.|.|=+
T Consensus         2 VvIysk~~Cp~C~~ak~lL~~~~i~~~~~~~d~~~~~~~~~~~l~~~----------------------~g~~TvPqIfi   59 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQEL----------------------TGQRTVPNVFI   59 (82)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH----------------------CCCCCCCEEEE
T ss_conf             89997388876999999999849980699646564399999999984----------------------39998886999


Q ss_pred             CCCCCCCCCCCCHHHHHH
Q ss_conf             257766675001699840
Q gi|254780157|r   89 PIISQTLGGIDSLLSIVQ  106 (165)
Q Consensus        89 P~~~~~~~G~dallS~vq  106 (165)
                        .+...+|.|-|..+.+
T Consensus        60 --~g~~IGG~~~l~~l~~   75 (82)
T cd03419          60 --GGKFIGGCDDLMALHK   75 (82)
T ss_pred             --CCEEECCHHHHHHHHH
T ss_conf             --9989847899999998


No 90 
>pfam02016 Peptidase_S66 LD-carboxypeptidase. Muramoyl-tetrapeptide carboxypeptidase hydrolyses a peptide bond between a di-basic amino acid and the C-terminal D-alanine in the tetrapeptide moiety in peptidoglycan. This cleaves the bond between an L- and a D-amino acid. The function of this activity is in murein recycling. This family also includes the microcin c7 self-immunity protein. This family corresponds to Merops family S66.
Probab=65.40  E-value=13  Score=18.94  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=46.4

Q ss_pred             EEEEE-CCCCCHHHHHHHHHHHHHCCCCEEEE--EEE-----HHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             99995-88169899999999999809982654--530-----10387999988987653598299997267668
Q gi|254780157|r    7 VAIIM-GSQSDWKIMKYAADMLDTLGIDYEAR--IIS-----AHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH   72 (165)
Q Consensus         7 V~Ii~-GS~SD~~~~~~a~~~L~~~gI~~~~~--V~S-----AHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa   72 (165)
                      |+|+. .|.-|....+++.+.|+.+|.+....  +..     +.-.-+|..++.+-..+.++++|+++-|+-++
T Consensus         1 I~iiaPS~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~d~~i~aI~~~rGGyga   74 (281)
T pfam02016         1 IGIVAPSSPLDPERLERAIARLESLGLEVVVGPHALARDGYLAGTDEERAADLHAAFADPEIDAIICARGGYGA   74 (281)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf             97992899899999999999999599989878762444676479999999999998508998899992787658


No 91 
>TIGR01357 aroB 3-dehydroquinate synthase; InterPro: IPR016037   The 3-dehydroquinate synthase (4.2.3.4 from EC) domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide (P07547 from SWISSPROT) . 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate . This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.; GO: 0003856 3-dehydroquinate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=65.03  E-value=13  Score=18.89  Aligned_cols=148  Identities=16%  Similarity=0.203  Sum_probs=90.6

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---HCCHHHHHHHHHHHHHCCC---EEEEEEECC-CCCCHHHH
Q ss_conf             7499995881698999999999998099826545301---0387999988987653598---299997267-66851134
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---HRTPDRLIEFAKNARFEGF---KLIIAGAGG-AAHLPGMI   77 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l~~~~~~~~~~~~---~viIa~AG~-aaaLpgvv   77 (165)
                      -++.||.=.+..--+.++....++..|.+....++.+   +++.+.+.+..+.+-..+.   +.+|++-|+ -+=|.|.|
T Consensus        26 ~~~~~~~d~~v~~~~~~~~~~~~~~~g~~v~~~~~p~GE~~K~l~~~~~l~~~L~~~~~~R~~~i~~~GGGvvgDlaGFv  105 (361)
T TIGR01357        26 SKLVIVTDETVADLYAEKLLEALQSAGFNVLVLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV  105 (361)
T ss_pred             CEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf             50799867456888888999999853875268870789874548889999999996588956478885453778789999


Q ss_pred             HHHCC--CCEEEECCC---------CCC----CCCCCCHHHHHHCCCCCCCEEE---ECCCCCCHHHHH-HHHHHHHCCC
Q ss_conf             65224--203661257---------766----6750016998403569862044---316753122899-9999970699
Q gi|254780157|r   78 AAMTS--LPVLGVPII---------SQT----LGGIDSLLSIVQMPAGVPVGTM---AIGQSGAINASL-LAVAILALDD  138 (165)
Q Consensus        78 a~~t~--~PVIgVP~~---------~~~----~~G~dallS~vqMP~Gvpvatv---~vg~~~~~NAal-~A~~Il~~~d  138 (165)
                      ||-=-  .|+|.||+.         +|+    +.+..++--+.-+|..|=+=+-   ..+.. -+-.++ =+.+.=-+.|
T Consensus       106 Aaty~RGi~~iqvPTTLLAmVDsSvGGKtGiN~~~gKNlIGaFy~P~~V~~D~~~L~TLP~~-E~~~G~AEviK~g~i~D  184 (361)
T TIGR01357       106 AATYMRGIRFIQVPTTLLAMVDSSVGGKTGINFPLGKNLIGAFYQPKAVLIDPDFLKTLPER-ELRSGMAEVIKHGLIAD  184 (361)
T ss_pred             HHHHHHCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHCCCCHH-HHHCCCHHHHHHHHCCC
T ss_conf             99996155826414047777653037641113788863042113774026501441588468-88644357788875189


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780157|r  139 KELTDRLNEWRTQQT  153 (165)
Q Consensus       139 ~~i~~kl~~~r~~~~  153 (165)
                      +++++.|.++.....
T Consensus       185 ~~~~~~l~~~~~~~~  199 (361)
T TIGR01357       185 AELFDELEKNEKLLL  199 (361)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             779988720067643


No 92 
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.88  E-value=13  Score=18.87  Aligned_cols=68  Identities=16%  Similarity=0.243  Sum_probs=39.3

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHH
Q ss_conf             9988749999588169899999999999809982654------------------------5301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~   56 (165)
                      |+.+-|+++|.|+.+.+  ...+++.|-+-|....+.                        +..=-+.++.+.++.++..
T Consensus         1 m~L~gK~vlITGgs~GI--G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   78 (247)
T PRK05565          1 MKLMGKVAIVTGASGGI--GRAIAELLAKEGAKVVIAYDKNEEAANELLEEIKEVGGDAIAVKADVSSEDDVENLVEQIV   78 (247)
T ss_pred             CCCCCCEEEEECCCCHH--HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             99899889993784589--9999999998799899981799899999999999639908999835899999999999999


Q ss_pred             HC--CCEEEEEEECCC
Q ss_conf             35--982999972676
Q gi|254780157|r   57 FE--GFKLIIAGAGGA   70 (165)
Q Consensus        57 ~~--~~~viIa~AG~a   70 (165)
                      ++  .++++|..||..
T Consensus        79 ~~~g~iD~lVnnAg~~   94 (247)
T PRK05565         79 EKFGKIDILVNNAGIS   94 (247)
T ss_pred             HHCCCCCEEEECCCCC
T ss_conf             9809984999899878


No 93 
>PRK06123 short chain dehydrogenase; Provisional
Probab=63.78  E-value=14  Score=18.74  Aligned_cols=65  Identities=14%  Similarity=0.137  Sum_probs=33.0

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHHH-
Q ss_conf             88749999588169899999999999809982654------------------------53010387999988987653-
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNARF-   57 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~~-   57 (165)
                      |+.||++|.|+.+.  +...+++.|.+.|....+.                        +..=-+..+.+.++.++..+ 
T Consensus         1 m~nKvalITGas~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (249)
T PRK06123          1 MMRKVMIITGASRG--IGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRE   78 (249)
T ss_pred             CCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             99988999686879--9999999999879989998089878999999999964990999984799999999999999998


Q ss_pred             -CCCEEEEEEECC
Q ss_conf             -598299997267
Q gi|254780157|r   58 -EGFKLIIAGAGG   69 (165)
Q Consensus        58 -~~~~viIa~AG~   69 (165)
                       ..++++|--||.
T Consensus        79 ~G~iDiLVnNAG~   91 (249)
T PRK06123         79 LGRLDALVNNAGI   91 (249)
T ss_pred             HCCCCEEEECCCC
T ss_conf             2998789988855


No 94 
>pfam10096 DUF2334 Uncharacterized protein conserved in bacteria (DUF2334). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=63.76  E-value=14  Score=18.74  Aligned_cols=51  Identities=22%  Similarity=0.360  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCH-----------HHHHHHHHHHHHCCCEEEE
Q ss_conf             16989999999999980998265453010387-----------9999889876535982999
Q gi|254780157|r   14 QSDWKIMKYAADMLDTLGIDYEARIISAHRTP-----------DRLIEFAKNARFEGFKLII   64 (165)
Q Consensus        14 ~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p-----------~~l~~~~~~~~~~~~~viI   64 (165)
                      .+|+..+++..+.|.+.+|||.+-++-.+..|           ..+...++.+.++|-.++.
T Consensus        12 ~~d~~~Lk~i~dyl~~~~IPf~va~IP~y~dp~~~~~~~l~~~~~fv~~Lry~~~rGG~I~l   73 (238)
T pfam10096        12 LVDLEKLKEIADYLYKKGIPFIVAVIPVYKDPEGGYDNDLSDNKKFVDALRYLQARGGSIIL   73 (238)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             88999999999999877998599977767878877003766768799999999974998999


No 95 
>PRK00865 glutamate racemase; Provisional
Probab=63.71  E-value=14  Score=18.73  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH-----HCCHHHHHH----HHHHHHHCCCE-EEEEEECCCCC
Q ss_conf             887499995881698999999999998099826545301-----038799998----89876535982-99997267668
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA-----HRTPDRLIE----FAKNARFEGFK-LIIAGAGGAAH   72 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA-----HR~p~~l~~----~~~~~~~~~~~-viIa~AG~aaa   72 (165)
                      |+..++|+=-+---+.+.++..+.|-...+-|-  -.++     .|+.+.+.+    +++...+.+++ ++|||--.+++
T Consensus         1 ~~~pIGiFDSGvGGLtVl~~l~~~lP~e~~iY~--gD~a~~PYG~ks~~~I~~~~~~i~~~l~~~~~k~iViACNTasa~   78 (262)
T PRK00865          1 MNAPIGVFDSGVGGLTVLREIRRQLPDEHIIYV--GDTARFPYGEKSEEEIRERTLEIVEFLLEQGVKMLVIACNTASAV   78 (262)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEE--ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf             999789986898879999999997899998998--237889989899999999999999999977998999816737899


Q ss_pred             CHHHHHHHCCCCEEEECC
Q ss_conf             511346522420366125
Q gi|254780157|r   73 LPGMIAAMTSLPVLGVPI   90 (165)
Q Consensus        73 Lpgvva~~t~~PVIgVP~   90 (165)
                      --..+-.....||||+=|
T Consensus        79 al~~lr~~~~iPiiGi~P   96 (262)
T PRK00865         79 ALEDLRERLDIPVVGIVP   96 (262)
T ss_pred             HHHHHHHHCCCCEEEECH
T ss_conf             999999647997798448


No 96 
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=62.83  E-value=14  Score=18.63  Aligned_cols=121  Identities=13%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHH----HHCCCC-------------EEEE----------------EEEH-----HCCHH
Q ss_conf             74999958816989999999999----980998-------------2654----------------5301-----03879
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADML----DTLGID-------------YEAR----------------IISA-----HRTPD   46 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L----~~~gI~-------------~~~~----------------V~SA-----HR~p~   46 (165)
                      +|++|+.++ -|-|-|+.+...+    ...|++             -++.                +..-     .++++
T Consensus         1 KrIaIltsG-Gd~pGmNa~Ir~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LgtsR~~~~~~~~   79 (317)
T cd00763           1 KRIGVLTSG-GDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDEE   79 (317)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             959999578-8856889999999999987899999982567787079816289999987986599501467787545567


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCHHH-HHHHCCCCEEEECCCCC-------CCCCC-----------CCHHHHHHC
Q ss_conf             999889876535982999972676685113-46522420366125776-------66750-----------016998403
Q gi|254780157|r   47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGM-IAAMTSLPVLGVPIISQ-------TLGGI-----------DSLLSIVQM  107 (165)
Q Consensus        47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgv-va~~t~~PVIgVP~~~~-------~~~G~-----------dallS~vqM  107 (165)
                      ...+..++.+..+++.+|.+-|-.. +-+. .-+.-..||||+|-.-+       +--|+           |.+.++.+-
T Consensus        80 ~~~~~~~~l~~~~Id~Li~IGGdgS-~~~a~~l~e~~i~vigIPkTIDNDi~gtd~t~GfdTAv~~~~~aid~i~~ta~s  158 (317)
T cd00763          80 GQAKAIEQLKKHGIDALVVIGGDGS-YMGAMRLTEHGFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTSSS  158 (317)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8999999999829998999569458-999999997499779713544678888787868899999999999999998505


Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf             5698620443167531228999999
Q gi|254780157|r  108 PAGVPVGTMAIGQSGAINASLLAVA  132 (165)
Q Consensus       108 P~Gvpvatv~vg~~~~~NAal~A~~  132 (165)
                      +..+-+.-+ .|.    +++++|..
T Consensus       159 ~~rv~ivEv-MGR----~aG~lAl~  178 (317)
T cd00763         159 HQRISVVEV-MGR----HCGDIALA  178 (317)
T ss_pred             CCCEEEEEE-CCC----CCHHHHHH
T ss_conf             787699996-897----60189998


No 97 
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein 
Probab=62.81  E-value=14  Score=18.63  Aligned_cols=49  Identities=18%  Similarity=0.260  Sum_probs=33.8

Q ss_pred             CCEEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             87499995881698999---99999999809982654530103879999889876
Q gi|254780157|r    4 APPVAIIMGSQSDWKIM---KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~---~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      +.+|++.|=|+-|.|.+   ..+...|++.|++|...=.-.+  | .+.++++..
T Consensus         7 ~~~vvvF~Kgt~~~P~C~f~~~a~~lL~~~~v~~~~~dv~~d--~-~~r~~l~~~   58 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--E-EVRQGLKEY   58 (90)
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEECCHHCC--H-HHHHHHHHH
T ss_conf             098899957988998887799999999996899741330058--9-999999997


No 98 
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=62.21  E-value=15  Score=18.56  Aligned_cols=95  Identities=19%  Similarity=0.278  Sum_probs=53.5

Q ss_pred             HHHHHHHHCCCCEEEEEEEHHC-----------------------C-----HHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             9999999809982654530103-----------------------8-----79999889876535982999972676685
Q gi|254780157|r   22 YAADMLDTLGIDYEARIISAHR-----------------------T-----PDRLIEFAKNARFEGFKLIIAGAGGAAHL   73 (165)
Q Consensus        22 ~a~~~L~~~gI~~~~~V~SAHR-----------------------~-----p~~l~~~~~~~~~~~~~viIa~AG~aaaL   73 (165)
                      =|.+.|++|||...-+|.+...                       .     .+++.++++++..++.           .|
T Consensus       132 iAk~~L~~~gI~i~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~gD-----------Sl  200 (344)
T cd07304         132 VAKKLLKEFGIEVVAHVKSIGGIEDEPFDLDEEELLEEAEESPVRCPDPEAEEKMKELIDEAKKEGD-----------SV  200 (344)
T ss_pred             HHHHHHHHCCCEEEEEEEEECCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC-----------CC
T ss_conf             9999998779699999996889876766765377898875498779898999999999999854499-----------98


Q ss_pred             HHHHHHHCCCCEEEECCCCCC--CCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             113465224203661257766--67500169984035698620443167531228999999970699
Q gi|254780157|r   74 PGMIAAMTSLPVLGVPIISQT--LGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD  138 (165)
Q Consensus        74 pgvva~~t~~PVIgVP~~~~~--~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d  138 (165)
                      .    +....=+-|||+--|.  ++.+|+.|+-.-|  ++| |+-+|-++.||    -++++.+...
T Consensus       201 G----G~ve~~~~gvP~GLG~p~f~kLda~La~alm--SIp-AvKgVEfG~Gf----~~a~~~GSe~  256 (344)
T cd07304         201 G----GVVEVVATGVPAGLGSPVFDKLDARLAQALM--SIP-AVKGVEIGSGF----EAARMRGSEV  256 (344)
T ss_pred             C----CEEEEEEECCCCCCCCHHCCCCHHHHHHHHH--CCC-CEEEEEECCHH----HHHHCCCCCC
T ss_conf             7----2899999788989885100621589999873--657-52379964426----5653665200


No 99 
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported.  It is suggested that M
Probab=62.12  E-value=15  Score=18.55  Aligned_cols=67  Identities=19%  Similarity=0.228  Sum_probs=49.4

Q ss_pred             EEEEEECCC----CCHHHHHHHHHHHHHCCCCEEEE--EEEHH-----CCHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             499995881----69899999999999809982654--53010-----387999988987653598299997267668
Q gi|254780157|r    6 PVAIIMGSQ----SDWKIMKYAADMLDTLGIDYEAR--IISAH-----RTPDRLIEFAKNARFEGFKLIIAGAGGAAH   72 (165)
Q Consensus         6 kV~Ii~GS~----SD~~~~~~a~~~L~~~gI~~~~~--V~SAH-----R~p~~l~~~~~~~~~~~~~viIa~AG~aaa   72 (165)
                      +|+|+.=|.    ++.+..+.+.+.|+.+|.+..+.  +..-|     -.-+|..++.+-..+..++.|+++-|+.++
T Consensus         2 ~I~ivAPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGGyga   79 (308)
T cd07062           2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDS   79 (308)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf             699996898776425999999999999699989878760234675579989999999998629998999991787778


No 100
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=62.06  E-value=15  Score=18.54  Aligned_cols=30  Identities=30%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99887499995881698999999999998099
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      |+.+-||++|.|+.+  -+...+++.|-+.|.
T Consensus         7 ~~L~gKvalVTGas~--GIG~aia~~la~~Ga   36 (255)
T PRK06113          7 LRLDGKCAIITGAGA--GIGKEIAITFATAGA   36 (255)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCC
T ss_conf             679999899958877--899999999998799


No 101
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.94  E-value=15  Score=18.53  Aligned_cols=51  Identities=18%  Similarity=0.150  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH
Q ss_conf             998874999958816989999999999980998265453010387999988987653
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF   57 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~   57 (165)
                      |+++-|+++|.|+.+  -+...++..|-+.|-..    .-.-|+++++.+..++.+.
T Consensus         1 m~l~gK~~lVTGas~--GIG~aiA~~la~~Ga~V----~i~~r~~~~l~~~~~~l~~   51 (238)
T PRK05786          1 MRLKGKNVLIVGVSP--GLGYAVAYFALREGASV----YAFARSEEKLKEIKKTLAK   51 (238)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEE----EEEECCHHHHHHHHHHHHC
T ss_conf             987998899928987--89999999999879999----9996988999999998743


No 102
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=61.88  E-value=15  Score=18.52  Aligned_cols=30  Identities=27%  Similarity=0.232  Sum_probs=17.7

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99887499995881698999999999998099
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      ++.+-||++|.|+.+  -+...+++.|-+.|-
T Consensus         5 ~~L~gK~alVTG~~~--GIG~aiA~~la~~Ga   34 (254)
T PRK08085          5 FSLAGKNILITGSAQ--GIGFLLATGLAEYGA   34 (254)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCC
T ss_conf             289999899968567--899999999998699


No 103
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.81  E-value=15  Score=18.52  Aligned_cols=89  Identities=21%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHH-HHHCCCEEEEEEECCCCCCHHHH
Q ss_conf             99887499995--8816989999999999980998265453010387999988987-65359829999726766851134
Q gi|254780157|r    1 MNIAPPVAIIM--GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKN-ARFEGFKLIIAGAGGAAHLPGMI   77 (165)
Q Consensus         1 m~~~pkV~Ii~--GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~-~~~~~~~viIa~AG~aaaLpgvv   77 (165)
                      |+.=.+|+|+.  ++..=...+++..+.|++-|+++-+.--++...+..-.+.... ...+.++.+|+. |+.+.+-.+.
T Consensus         1 m~~~k~vgIv~k~~~~~a~~~~~~l~~~L~~~gi~v~ld~~~a~~~~~~~~~~~~~~~~~~~~Dlii~l-GGDGT~L~~~   79 (296)
T PRK01231          1 MEQFRNIGLIGRLGSSQVVETLRRLKRFLLDRHLHVILEEETAEVLPGHGLQTVSRKLLGEVCDLVIVV-GGDGSLLGAA   79 (296)
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHCCCCEEEEEEE-CCCCHHHHHH
T ss_conf             999989999984898799999999999998788999993247766587886624533416530499995-7872899999


Q ss_pred             HH--HCCCCEEEECC
Q ss_conf             65--22420366125
Q gi|254780157|r   78 AA--MTSLPVLGVPI   90 (165)
Q Consensus        78 a~--~t~~PVIgVP~   90 (165)
                      --  ....||+|+=.
T Consensus        80 ~~~~~~~~PilGiN~   94 (296)
T PRK01231         80 RALARHNVPVLGINR   94 (296)
T ss_pred             HHHCCCCCCEEEEEC
T ss_conf             996036997898855


No 104
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=61.55  E-value=15  Score=18.49  Aligned_cols=85  Identities=15%  Similarity=0.288  Sum_probs=59.3

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEEEEEEHHCCH-------------------------------------H
Q ss_conf             74999958816989999999999980-998265453010387-------------------------------------9
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTL-GIDYEARIISAHRTP-------------------------------------D   46 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~-gI~~~~~V~SAHR~p-------------------------------------~   46 (165)
                      +||+++.|+-.|.-.+.+....|++- ++++.+-+.+-|-.+                                     .
T Consensus         1 kKI~~v~GtRpe~iklapli~~l~~~~~~~~~li~TGqH~~~~~g~t~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (365)
T TIGR03568         1 KKICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGL   80 (365)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             94999985077299999999999728998889999077784110708999997579876557654568985339999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-CCCCEEEEC
Q ss_conf             9998898765359829999726766851134652-242036612
Q gi|254780157|r   47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-TSLPVLGVP   89 (165)
Q Consensus        47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-t~~PVIgVP   89 (165)
                      -+.++.+..+...++++++.......|++.+++. -..||+-+=
T Consensus        81 ~~~~~~~~l~~~kPD~VlV~GDt~stla~alaA~~~~Ipv~Hve  124 (365)
T TIGR03568        81 TIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIH  124 (365)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEE
T ss_conf             99999999854399899994898607799999998198189996


No 105
>PRK05875 short chain dehydrogenase; Provisional
Probab=61.52  E-value=15  Score=18.48  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=25.1

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf             9988749999588169899999999999809982
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDY   34 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~   34 (165)
                      |+++-|+++|.|+.+  -+...++..|.+.|...
T Consensus         3 l~L~gK~alVTGas~--GIG~aiA~~la~~Ga~V   34 (277)
T PRK05875          3 LSLQDRTYLVTGGGS--GIGKGVAAALVAAGAAV   34 (277)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEE
T ss_conf             468999899948874--99999999999879989


No 106
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=61.48  E-value=15  Score=18.48  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=28.8

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEE
Q ss_conf             99588169899999999999809982654530103879999889876535982999972676685113465224203661
Q gi|254780157|r    9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGV   88 (165)
Q Consensus         9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgV   88 (165)
                      ++.||..|.+.++++...+..-.-+.-...++- -+..++..+++     .++++|+...+--||+.    -...|+|++
T Consensus       217 vl~G~~~e~~~~~~i~~~l~~~~~~~~~nl~Gk-tsL~el~ali~-----~a~l~I~nDSGpmHlAa----A~g~P~val  286 (348)
T PRK10916        217 VLFGSAKDHEAGNEILAALNTEQQAWCRNLAGE-TQLEQAVILIA-----ACKAIVTNDSGLMHVAA----ALNRPLVAL  286 (348)
T ss_pred             EEEECHHHHHHHHHHHHHHHHHCCCCEECCCCC-CCHHHHHHHHH-----HCCEEEECCCHHHHHHH----HCCCCEEEE
T ss_conf             998172369999999985103315651416788-99999999998-----55987844882899999----809988999


No 107
>PRK07326 short chain dehydrogenase; Provisional
Probab=61.07  E-value=16  Score=18.43  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=39.8

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------------E-EEEHHCCHHHHHHHHHHHHH--
Q ss_conf             998874999958816989999999999980998265--------------------4-53010387999988987653--
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA--------------------R-IISAHRTPDRLIEFAKNARF--   57 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~--------------------~-V~SAHR~p~~l~~~~~~~~~--   57 (165)
                      |+.+-||++|.|+.|  -+...+++.|.+.|....+                    . +..=-+.++.+.+.++...+  
T Consensus         1 M~~~GKvalITGas~--GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~   78 (235)
T PRK07326          1 MSGNGKAALVTGGSK--GIGFAVAEALAAAGYRVAICARDESELEAAAQELGKRNVLGLACDVRDEADVRQAVDAHVEAF   78 (235)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             999998999938267--999999999998799999998988999999998423986999963899999999999999982


Q ss_pred             CCCEEEEEEECCC
Q ss_conf             5982999972676
Q gi|254780157|r   58 EGFKLIIAGAGGA   70 (165)
Q Consensus        58 ~~~~viIa~AG~a   70 (165)
                      ..++++|.-||..
T Consensus        79 G~iDiLVNNAGi~   91 (235)
T PRK07326         79 GGLDILVNNAGVG   91 (235)
T ss_pred             CCCEEEEECCCCC
T ss_conf             9966999888778


No 108
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=60.84  E-value=16  Score=18.41  Aligned_cols=111  Identities=23%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             CCEEEEEECCCCCHH---------HHH----HHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             874999958816989---------999----9999999809982654530103879999889876535982999972676
Q gi|254780157|r    4 APPVAIIMGSQSDWK---------IMK----YAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA   70 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~---------~~~----~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~a   70 (165)
                      +|||+||+-++-=.+         +.+    -....|+++|.+....=.-.| .++.+.+.++++.++ ++++|+-.|-|
T Consensus       176 kprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~D-d~~~l~~~i~~a~~~-~DviItsGG~S  253 (404)
T COG0303         176 KPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPD-DPEALREAIEKALSE-ADVIITSGGVS  253 (404)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHHHC-CCEEEEECCCC
T ss_conf             8889999058545588888999858736799999999975992453353599-989999999977524-99999969866


Q ss_pred             C----CCHHHHHH-HCCCCEEEECCCCCCCCCCCCHHHH-HHCCCCCCCEEE
Q ss_conf             6----85113465-2242036612577666750016998-403569862044
Q gi|254780157|r   71 A----HLPGMIAA-MTSLPVLGVPIISQTLGGIDSLLSI-VQMPAGVPVGTM  116 (165)
Q Consensus        71 a----aLpgvva~-~t~~PVIgVP~~~~~~~G~dallS~-vqMP~Gvpvatv  116 (165)
                      .    +++-++.. +=..=+-|++..-|...++.-+--. +=+.||.|++..
T Consensus       254 vG~~D~v~~~l~~~lG~v~~~gia~kPGkP~~~g~~~~~~v~gLPGnPvSal  305 (404)
T COG0303         254 VGDADYVKAALERELGEVLFHGVAMKPGKPTGLGRLGGKPVFGLPGNPVSAL  305 (404)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCEEEECCCCHHHHH
T ss_conf             7614669999984389379976660699845999989978998988779999


No 109
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=60.54  E-value=16  Score=18.37  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHH
Q ss_conf             9988749999588169899999999999809982654------------------------5301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~   56 (165)
                      |+++-||++|.|+.+  -+...++..|-+-|-..-+.                        +..=-..++.+.+++++..
T Consensus         2 ~~L~gKvalVTG~s~--GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~~~~~v~~~~   79 (247)
T PRK12935          2 VQLNGKVAIVTGGAK--GIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAV   79 (247)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             988969899917276--899999999998799899976999899999999998439958999857999999999999999


Q ss_pred             H--CCCEEEEEEECCC
Q ss_conf             3--5982999972676
Q gi|254780157|r   57 F--EGFKLIIAGAGGA   70 (165)
Q Consensus        57 ~--~~~~viIa~AG~a   70 (165)
                      +  ..++++|.-||..
T Consensus        80 ~~~G~iDiLVNNAGi~   95 (247)
T PRK12935         80 NHFGKVDILVNNAGIT   95 (247)
T ss_pred             HHCCCCCEEEECCCCC
T ss_conf             9839998999899889


No 110
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=60.15  E-value=16  Score=18.33  Aligned_cols=85  Identities=18%  Similarity=0.364  Sum_probs=50.5

Q ss_pred             EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-------CCCCEEEECCCCC-------CCCCC-----
Q ss_conf             5301038799998898765359829999726766851134652-------2420366125776-------66750-----
Q gi|254780157|r   38 IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-------TSLPVLGVPIISQ-------TLGGI-----   98 (165)
Q Consensus        38 V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-------t~~PVIgVP~~~~-------~~~G~-----   98 (165)
                      +.+--|.+....+++++++..+++.++++ |+.+.|-|+..=.       ...+|||+|-.-.       .--|+     
T Consensus       150 ILGsSRg~~d~~~ivd~l~~~gid~L~~I-GGDGTl~gA~~i~~e~~~rgl~I~VvGIPKTIDNDi~~~d~sfGF~TAv~  228 (442)
T PRK06830        150 ILGSSRGPQDPVEIVDTLERMNINILFVI-GGDGTLKGALKIAEEIARRNLKISVVGIPKTIDNDINFIQKSFGFETAVE  228 (442)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCEEEEE-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEECHHHHHH
T ss_conf             89608999898999999998399989994-88027899999999999638994077456433477543031312461999


Q ss_pred             ------CCHHHHHH-CCCCCCCEEEECCCCCCH
Q ss_conf             ------01699840-356986204431675312
Q gi|254780157|r   99 ------DSLLSIVQ-MPAGVPVGTMAIGQSGAI  124 (165)
Q Consensus        99 ------dallS~vq-MP~Gvpvatv~vg~~~~~  124 (165)
                            |++..+.+ -+.|+-+.-+ .|.+.|+
T Consensus       229 ~a~~ai~~~~~eA~s~~~gvg~v~l-MGR~sG~  260 (442)
T PRK06830        229 KATEAIACAHVEAKGAPNGIGLVKL-MGRHSGF  260 (442)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEE-CCCCHHH
T ss_conf             9999999998776515785599998-3664308


No 111
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.59  E-value=16  Score=18.27  Aligned_cols=80  Identities=11%  Similarity=0.040  Sum_probs=57.9

Q ss_pred             EEEEECCC-C--CHHHH-HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--
Q ss_conf             99995881-6--98999-999999998099826545301038799998898765359829999726766851134652--
Q gi|254780157|r    7 VAIIMGSQ-S--DWKIM-KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--   80 (165)
Q Consensus         7 V~Ii~GS~-S--D~~~~-~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--   80 (165)
                      +++++.+- |  =+..+ +.+.+..+++|++.  .+.+++..+.+-.+.++++..++++.||....-..++...+...  
T Consensus         2 Ig~~~~~~~~~pf~~~~~~g~e~~A~~~G~~~--~v~~~~~d~~~q~~~i~~~i~~~vd~Iii~p~d~~~~~~~i~~a~~   79 (275)
T cd06317           2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVEV--IVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ   79 (275)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE--EEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             78977888898699999999999999769989--9977999999999999999975999999967871245799999998


Q ss_pred             CCCCEEEE
Q ss_conf             24203661
Q gi|254780157|r   81 TSLPVLGV   88 (165)
Q Consensus        81 t~~PVIgV   88 (165)
                      .-.|||.+
T Consensus        80 agIpVv~~   87 (275)
T cd06317          80 AGIPVVIT   87 (275)
T ss_pred             CCCEEEEE
T ss_conf             69949997


No 112
>PRK07479 consensus
Probab=59.38  E-value=17  Score=18.25  Aligned_cols=67  Identities=18%  Similarity=0.193  Sum_probs=40.4

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC------------------------EEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             998874999958816989999999999980998------------------------26545301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID------------------------YEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~------------------------~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      |+++-||++|.|+.+-  +...+++.|-+.|..                        +.. +..=-+.++.+.+..+...
T Consensus         1 m~L~gK~alITGgs~G--IG~a~a~~la~~G~~V~i~~~~~~~~~~~~~~l~~~g~~~~~-~~~Dv~~~~~~~~~~~~~~   77 (252)
T PRK07479          1 MRLSGKVAIVTGAGSG--FGEGIAKRFAREGAKVVVADLNAAAAERVASEIADAGGNAIA-VAADVSRGADVEALVEAAL   77 (252)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHH
T ss_conf             9879988999388768--999999999987999999979899999999999853997899-9925899999999999999


Q ss_pred             H--CCCEEEEEEECCC
Q ss_conf             3--5982999972676
Q gi|254780157|r   57 F--EGFKLIIAGAGGA   70 (165)
Q Consensus        57 ~--~~~~viIa~AG~a   70 (165)
                      +  ..++++|..||..
T Consensus        78 ~~~G~iD~lVnnAG~~   93 (252)
T PRK07479         78 EAFGRVDIVVNNAGTT   93 (252)
T ss_pred             HHHCCCCEEEECCCCC
T ss_conf             9819985999899766


No 113
>PRK12743 acetoin dehydrogenase; Provisional
Probab=59.21  E-value=17  Score=18.23  Aligned_cols=55  Identities=15%  Similarity=0.075  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC
Q ss_conf             6989999999999980998265453010387999988987653--5982999972676
Q gi|254780157|r   15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA   70 (165)
Q Consensus        15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a   70 (165)
                      +|..-.++..+.++.+|..+....+ =-..++...++++...+  .+++++|-.||..
T Consensus        35 ~~~~~~~~~~~~~~~~g~~~~~~~~-Dv~~~~~~~~~~~~~~~~~G~iDilVNnAG~~   91 (253)
T PRK12743         35 SDEEGAKETAEEVVSHGVRAEIVHL-DLSNLPEGAQAIEKLIQRLGRLDVLVNNAGAM   91 (253)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             9979999999999945991899990-48999999999999999819998999899899


No 114
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=59.02  E-value=17  Score=18.21  Aligned_cols=26  Identities=12%  Similarity=0.032  Sum_probs=11.1

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             49999588169899999999999809
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLG   31 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~g   31 (165)
                      +|.|.+|++-......++.+.|.+..
T Consensus       173 ~Ili~~GGsD~~~lt~~il~~l~~~~  198 (280)
T TIGR03590       173 RVLVSFGGADPDNLTLKLLSALAESQ  198 (280)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             28999778770008999999998516


No 115
>PRK09730 hypothetical protein; Provisional
Probab=58.71  E-value=17  Score=18.17  Aligned_cols=54  Identities=7%  Similarity=0.078  Sum_probs=25.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC
Q ss_conf             989999999999980998265453010387999988987653--5982999972676
Q gi|254780157|r   16 DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA   70 (165)
Q Consensus        16 D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a   70 (165)
                      +.+-+++..+.+++.|..+... -.=-..++.+.++.+...+  ..++++|--||..
T Consensus        35 ~~~~~~~~~~~~~~~g~~~~~~-~~Dv~~~~~v~~~~~~i~~~~g~id~LVNNAG~~   90 (247)
T PRK09730         35 NLHAAQEVVNLITQAGGKAFVL-QADISDENQVVAMFTAIDQHDEPLAALVNNAGIL   90 (247)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             8789999999999749928999-8258999999999999999759955999898635


No 116
>PRK13138 consensus
Probab=58.57  E-value=17  Score=18.16  Aligned_cols=116  Identities=21%  Similarity=0.316  Sum_probs=61.7

Q ss_pred             CHHH----HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC---CHHHHHHHCCCCEEEE
Q ss_conf             9899----99999999980998265453010387999988987653598299997267668---5113465224203661
Q gi|254780157|r   16 DWKI----MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH---LPGMIAAMTSLPVLGV   88 (165)
Q Consensus        16 D~~~----~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa---Lpgvva~~t~~PVIgV   88 (165)
                      |+|+    .++-...+++.|++. +..++..-+.+|+.++.+..  +|.-.++...|-.+.   ++.-            
T Consensus       126 DLP~e~~E~~~~~~~~~~~~i~~-I~liaPtt~~~Ri~~i~~~s--~gFiY~Vs~~GvTG~~~~~~~~------------  190 (264)
T PRK13138        126 DLPFDTPEAEEFFSQLERKKIDF-IHLVTPATTEDRIQSMKSFA--SGFIYYVTSYGVTGERGAIASG------------  190 (264)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCHH------------
T ss_conf             89865033599999999869986-75217999899999999738--8808987545667876555376------------


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHH------------HHHHHHHC---CCHHHHHHHHHHHHHHH
Q ss_conf             2577666750016998403569862044316753122899------------99999706---99999999999999999
Q gi|254780157|r   89 PIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASL------------LAVAILAL---DDKELTDRLNEWRTQQT  153 (165)
Q Consensus        89 P~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal------------~A~~Il~~---~d~~i~~kl~~~r~~~~  153 (165)
                               +..+...+.--..+|++. +.|+..+.-+..            .-++++.-   ..+++.+++.+|-++++
T Consensus       191 ---------~~~~i~~ik~~t~~Pv~v-GFGIs~~e~~~~~~~~ADGvIVGSaiv~~i~~~~~~~~~~~~~v~~~~~~lk  260 (264)
T PRK13138        191 ---------LEDRIQMVRKIVGLPVCA-GFGISTADQAKEISTYADGVIIGSAVQKIIEENGSDRENCADKLFAYASEIR  260 (264)
T ss_pred             ---------HHHHHHHHHHHCCCCEEE-EECCCCHHHHHHHHHCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             ---------999999999743898388-6067989999999834999998199999999727877789999999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780157|r  154 ISI  156 (165)
Q Consensus       154 ~~v  156 (165)
                      ..+
T Consensus       261 ~~~  263 (264)
T PRK13138        261 ASM  263 (264)
T ss_pred             HHH
T ss_conf             963


No 117
>PRK10222 L-ascorbate-specific enzyme IIB component of PTS; Provisional
Probab=58.37  E-value=7.2  Score=20.59  Aligned_cols=56  Identities=25%  Similarity=0.372  Sum_probs=40.6

Q ss_pred             HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEC
Q ss_conf             999999998099826545301038799998898765359829999726766851134652242036612
Q gi|254780157|r   21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVP   89 (165)
Q Consensus        21 ~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP   89 (165)
                      .|+..+|++.||++.+.-||.-       +|-.  ...++++||+    |.||.+-+.+-+..-|+||-
T Consensus         5 mKV~~~L~k~gi~~~~~SCavg-------d~K~--~l~~~DIIVa----S~HL~~Ei~~~~~~~vlGV~   60 (85)
T PRK10222          5 MKVDQFLTQSNIDHTVNSCAVG-------EYKS--ELSGADIIIA----STHIAGEITVTGNKYVVGVR   60 (85)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHH-------HHHC--CCCCCCEEEE----CHHHHHHCCCCCCCEEEEHH
T ss_conf             8899999982995210020356-------5543--4677778987----06657542678892688302


No 118
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=58.24  E-value=17  Score=18.12  Aligned_cols=46  Identities=22%  Similarity=0.336  Sum_probs=34.4

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             99588169899999999999809982654530103879999889876
Q gi|254780157|r    9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |.+=+.+.=|....+...|++.|++|+......+.. ....++++..
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~   48 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRG   48 (80)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHHHHH
T ss_conf             799938999645999999997799709998378867-8999999971


No 119
>PRK07109 short chain dehydrogenase; Provisional
Probab=58.08  E-value=17  Score=18.10  Aligned_cols=67  Identities=13%  Similarity=0.103  Sum_probs=34.9

Q ss_pred             CCCEEEEEECCCCCH----------------------HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--C
Q ss_conf             887499995881698----------------------9999999999980998265453010387999988987653--5
Q gi|254780157|r    3 IAPPVAIIMGSQSDW----------------------KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--E   58 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~----------------------~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~   58 (165)
                      ++-||++|.|..|-+                      .-.++..+.++..|-+... +..=-..++.+.+.++..++  .
T Consensus         6 l~~KvVvITGASsGIGra~A~~fA~~Ga~Vvl~aR~~~~L~~~a~e~~~~G~~~~~-~~~DVsd~~~v~~~~~~~~~~~G   84 (338)
T PRK07109          6 LGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEGLAAEIRAAGGEALA-VVADVADAEAVQAAADRAEEELG   84 (338)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE-EEEECCCHHHHHHHHHHHHHHHC
T ss_conf             69898999484349999999999987998999989999999999999963981899-98017999999999999999849


Q ss_pred             CCEEEEEEECCC
Q ss_conf             982999972676
Q gi|254780157|r   59 GFKLIIAGAGGA   70 (165)
Q Consensus        59 ~~~viIa~AG~a   70 (165)
                      .++++|-.||..
T Consensus        85 ~IDvlVNNAGi~   96 (338)
T PRK07109         85 PIDTWVNNAMVT   96 (338)
T ss_pred             CCCEEEECCCCC
T ss_conf             988886546667


No 120
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and  m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=57.89  E-value=18  Score=18.08  Aligned_cols=86  Identities=19%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             99999999999809982654530103879999889876535982999972676685113465224203661257766675
Q gi|254780157|r   18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGG   97 (165)
Q Consensus        18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G   97 (165)
                      -+....+..|.+-|    ..|...|+....+.++.++     .|++|+++|....+.+-.--. --=||-|=+.  ..+|
T Consensus        39 ~VG~Pla~lL~~~~----atVt~~hs~t~~l~~~~~~-----ADIvI~a~G~p~~i~~~~vk~-GavvIDvGi~--~~~~  106 (140)
T cd05212          39 IVGAPLQCLLQRDG----ATVYSCDWKTIQLQSKVHD-----ADVVVVGSPKPEKVPTEWIKP-GATVINCSPT--KLSG  106 (140)
T ss_pred             HHHHHHHHHHHHCC----CEEEEECCCCCCHHHHHHH-----CCEEEECCCCCCCCCHHHCCC-CCEEEEECCC--CCCC
T ss_conf             24999999999788----9899946999598998523-----499998168767278977679-9889980377--5677


Q ss_pred             CCCHHH----HHHCCCCCCCEEE
Q ss_conf             001699----8403569862044
Q gi|254780157|r   98 IDSLLS----IVQMPAGVPVGTM  116 (165)
Q Consensus        98 ~dallS----~vqMP~Gvpvatv  116 (165)
                      -+ ...    .-.+|.|+.+.|+
T Consensus       107 ~~-v~~~a~~iTPVPGGVGP~Tv  128 (140)
T cd05212         107 DD-VKESASLYVPMTGGVGKLTV  128 (140)
T ss_pred             HH-HHCEEEEECCCCCCCCHHHH
T ss_conf             21-44165287789995469999


No 121
>PRK07478 short chain dehydrogenase; Provisional
Probab=57.62  E-value=18  Score=18.06  Aligned_cols=67  Identities=25%  Similarity=0.201  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC------------------------EEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             998874999958816989999999999980998------------------------26545301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID------------------------YEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~------------------------~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      |.++-||++|.|+.+  -+...+++.|.+.|-.                        .... ..=-+.++.+.+.++...
T Consensus         2 m~L~gKvalVTGas~--GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~ei~~~g~~~~~~-~~Dvt~~~~v~~~v~~~~   78 (254)
T PRK07478          2 MLLNGKVAIITGASS--GIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVAL-AGDVRDEAYAKALVALAV   78 (254)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHH
T ss_conf             888998799958876--89999999999879999999798899999999999649908999-768999999999999999


Q ss_pred             H--CCCEEEEEEECCC
Q ss_conf             3--5982999972676
Q gi|254780157|r   57 F--EGFKLIIAGAGGA   70 (165)
Q Consensus        57 ~--~~~~viIa~AG~a   70 (165)
                      +  ..++++|.-||..
T Consensus        79 ~~~G~iDiLVNNAG~~   94 (254)
T PRK07478         79 ERFGGLDIAFNNAGIL   94 (254)
T ss_pred             HHHCCCCEEEECCCCC
T ss_conf             9849998999887436


No 122
>PRK13127 consensus
Probab=57.34  E-value=18  Score=18.03  Aligned_cols=120  Identities=18%  Similarity=0.282  Sum_probs=66.4

Q ss_pred             CHHHH--HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCC---CCHHH-------HHHHCCC
Q ss_conf             98999--999999998099826545301038799998898765359829999726766---85113-------4652242
Q gi|254780157|r   16 DWKIM--KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAA---HLPGM-------IAAMTSL   83 (165)
Q Consensus        16 D~~~~--~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aa---aLpgv-------va~~t~~   83 (165)
                      |+|.-  ++....+++.|++.. ..++.+-+.+|+.++.+..  +|.-.++...|-.+   .++.-       +-.+|..
T Consensus       123 DLP~eE~~~~~~~~~~~gi~~I-~lvaPtt~~~Ri~~i~~~a--~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~  199 (262)
T PRK13127        123 DLPVEEATDLREACKKHGLDLV-FLVAPTTPEERLKRIDEAS--SGFVYLVSRLGVTGAREDVEEATFDLLKRARTTCKN  199 (262)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             9997899999999985583279-9858999899999998438--981899843555687655528899999999961799


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHC----CCCCCCEEEECCCCCCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             036612577666750016998403----569862044316753122899999997--06999999999999999999998
Q gi|254780157|r   84 PVLGVPIISQTLGGIDSLLSIVQM----PAGVPVGTMAIGQSGAINASLLAVAIL--ALDDKELTDRLNEWRTQQTISIS  157 (165)
Q Consensus        84 PVIgVP~~~~~~~G~dallS~vqM----P~Gvpvatv~vg~~~~~NAal~A~~Il--~~~d~~i~~kl~~~r~~~~~~v~  157 (165)
                      ||     -.|  -|+.+--..-++    .-|+=     ||.      |  -+++|  +..++++.+++.+|.+++++.+.
T Consensus       200 Pv-----~vG--FGI~~~e~v~~~~~~~aDGvI-----VGS------a--iv~~i~~~~~~~~~~~~v~~~~~~lk~ai~  259 (262)
T PRK13127        200 KI-----AVG--FGISKGEHAEELLDAGADGVI-----VGS------A--LVDIIAEGGDNEEVADRLEELARELKSGIK  259 (262)
T ss_pred             CE-----EEE--EEECCHHHHHHHHHCCCCEEE-----ECH------H--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             84-----899--334889999999864999999-----878------9--999999669978999999999999999985


Q ss_pred             H
Q ss_conf             4
Q gi|254780157|r  158 E  158 (165)
Q Consensus       158 ~  158 (165)
                      +
T Consensus       260 ~  260 (262)
T PRK13127        260 R  260 (262)
T ss_pred             C
T ss_conf             6


No 123
>PRK07035 short chain dehydrogenase; Provisional
Probab=56.73  E-value=18  Score=17.96  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=20.2

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99887499995881698999999999998099
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      ++++-||++|.|+.|  -+...++..|.+.|.
T Consensus         4 ~~L~gKvalITGas~--GIG~aia~~la~~Ga   33 (252)
T PRK07035          4 FDLTGKIALVTGASR--GIGEAIAKLLAQQGA   33 (252)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCC
T ss_conf             467899899958874--999999999998799


No 124
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=56.59  E-value=18  Score=17.95  Aligned_cols=89  Identities=18%  Similarity=0.306  Sum_probs=55.5

Q ss_pred             EEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-------CCCCEEEECCCC-------CCCCCCCC---
Q ss_conf             5301038799998898765359829999726766851134652-------242036612577-------66675001---
Q gi|254780157|r   38 IISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-------TSLPVLGVPIIS-------QTLGGIDS---  100 (165)
Q Consensus        38 V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-------t~~PVIgVP~~~-------~~~~G~da---  100 (165)
                      +.+--|.|....+++++.+..+++.++++ |+.+.+-|..+-.       ...+|||+|-.-       ..-.|+|.   
T Consensus       166 ILGTSRG~~d~~~iVd~L~~~gId~LfvI-GGDGTlrgA~~I~~e~~~Rgl~I~VVGIPKTIDNDI~~~D~TFGFdTAVe  244 (486)
T PTZ00286        166 ILGSSRGPQDPKEMVDTLVRMKINILFTV-GGDGTQRGALKIYEEAKRRGENIAVFGVPKTIDNDLAFSHRTFGFQTAVE  244 (486)
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHCCCCHHHHHH
T ss_conf             98548999898999999998599989997-88466889999999999717885066468543576410010024023999


Q ss_pred             --------HHHHHH-CCCCCCCEEEECCCCCCHHHHH
Q ss_conf             --------699840-3569862044316753122899
Q gi|254780157|r  101 --------LLSIVQ-MPAGVPVGTMAIGQSGAINASL  128 (165)
Q Consensus       101 --------llS~vq-MP~Gvpvatv~vg~~~~~NAal  128 (165)
                              .....+ -+.|+-+.-+ .|.+.||=|+.
T Consensus       245 ~AteAI~~ah~EA~sa~nGIGlVkL-MGR~SGfIA~~  280 (486)
T PTZ00286        245 QAVNAVRAAYAEAVSLNYGVGIVKL-MGRESGFIAAQ  280 (486)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHH
T ss_conf             9999999998875235685189997-25551289988


No 125
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.47  E-value=19  Score=17.93  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             EEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHH------HHHHHHHHCCCEEEEEEECCCCCCHHHH
Q ss_conf             499995--88169899999999999809982654530103879999------8898765359829999726766851134
Q gi|254780157|r    6 PVAIIM--GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLI------EFAKNARFEGFKLIIAGAGGAAHLPGMI   77 (165)
Q Consensus         6 kV~Ii~--GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~------~~~~~~~~~~~~viIa~AG~aaaLpgvv   77 (165)
                      ||+|+.  ....-.++.++....|++.|+++.+.--.+........      .+.+. +...++++|+ -|+.+.+-..+
T Consensus         2 KIaIigk~~~~~~~~~~~~Li~~L~~~g~~v~le~~~a~~l~~~~~~~~~~~~~~~~-~~~~~Dlvi~-iGGDGT~L~a~   79 (290)
T PRK01911          2 KIAIFGQTYQASKSPHIKRLFELLEEHGAEIYIEEEFLNFLTQDLKFEPKYKGFFDG-NNFDFDMVIS-IGGDGTFLRAA   79 (290)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCEEEE-ECCCHHHHHHH
T ss_conf             999988889847999999999999988998999768978776512566431232113-5777779999-78768999999


Q ss_pred             HH--HCCCCEEEECCC
Q ss_conf             65--224203661257
Q gi|254780157|r   78 AA--MTSLPVLGVPII   91 (165)
Q Consensus        78 a~--~t~~PVIgVP~~   91 (165)
                      -.  ....|++|+-.-
T Consensus        80 ~~~~~~~iPilGiN~G   95 (290)
T PRK01911         80 ARVGNSGIPILGINTG   95 (290)
T ss_pred             HHHHHCCCCEEEEECC
T ss_conf             9861259968999448


No 126
>PRK11574 hypothetical protein; Provisional
Probab=56.28  E-value=13  Score=18.93  Aligned_cols=66  Identities=12%  Similarity=0.076  Sum_probs=35.0

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE---------EEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             8874999958816989999999999980998265---------45301038799998898765359829999726
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA---------RIISAHRTPDRLIEFAKNARFEGFKLIIAGAG   68 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~---------~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG   68 (165)
                      |++||.|+..--+..-=+--..+.|++-|++..+         .|.+.|...-......++...+.++.+|-=-|
T Consensus         1 M~kk~LV~lA~GfEEiEa~~~vDvLRRagi~V~~asv~~~~~~~v~gs~gi~i~aD~~l~~v~~~~yD~ivlPGG   75 (196)
T PRK11574          1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLTITCSRGVKLLADAPLVEVADGEYDVIVLPGG   75 (196)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCEEECCCCHHHCCCCCCCEEECCCC
T ss_conf             985699991698502125189999977798499998538997379947997895786777778255888991788


No 127
>PRK12937 short chain dehydrogenase; Provisional
Probab=55.54  E-value=19  Score=17.84  Aligned_cols=68  Identities=18%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHH
Q ss_conf             9988749999588169899999999999809982654------------------------5301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~   56 (165)
                      |+.+-|+++|.|+++  -+...+++.|-+.|...-+.                        +..=-+.++.+.++++...
T Consensus         1 M~~sgK~alVTGgs~--GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~   78 (245)
T PRK12937          1 MTDSNKVAIVTGASR--GIGAAIARRLAADGFAVAVNYAGSAAMADELVEEIEAAGGRAIAVQADVADAAAVDRLFEAAE   78 (245)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             999998899948577--899999999998799999976998689999999999659958999837899999999999999


Q ss_pred             H--CCCEEEEEEECCC
Q ss_conf             3--5982999972676
Q gi|254780157|r   57 F--EGFKLIIAGAGGA   70 (165)
Q Consensus        57 ~--~~~~viIa~AG~a   70 (165)
                      +  ..++++|-.||..
T Consensus        79 ~~~g~iDilVnNAg~~   94 (245)
T PRK12937         79 TAFGRIDVLVNSAGIM   94 (245)
T ss_pred             HHHCCCCEEEEECCCC
T ss_conf             9819988999805489


No 128
>pfam02608 Bmp Basic membrane protein. This is a family of basic membrane lipoproteins form Borrelia and various putative lipoproteins form other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family. One protein, Bacillus subtilis med, is a transcriptional activator.
Probab=55.43  E-value=19  Score=17.83  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=62.9

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHH--HC--CCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH
Q ss_conf             9988749999588169899999999999--80--9982654530103879999889876535982999972676685113
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLD--TL--GIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM   76 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~--~~--gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv   76 (165)
                      |..+-+|+.+-|-+...-.--.....+-  ..  .++..+....-.-.|..-.+....+.+.|++||-.+||.++  .|+
T Consensus       122 ~tkt~~vG~vgG~~~p~i~~f~~GF~~Ga~~~npdi~v~~~y~gsf~D~~k~k~~A~~~~~~GaDVI~~~ag~~g--~Gv  199 (302)
T pfam02608       122 MSKTNKIGFVGGMEIPVVLSFIYGFEAGAKYVNPDIEVVVKYAGTFSDSAKGKALASSLYKEGVDVIYPAAGLTG--IGV  199 (302)
T ss_pred             HCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC--HHH
T ss_conf             158774699911253766745999999999719996299999089687689999999999759989998889887--899


Q ss_pred             HHHHCC----CCEEEECCCCCCCC
Q ss_conf             465224----20366125776667
Q gi|254780157|r   77 IAAMTS----LPVLGVPIISQTLG   96 (165)
Q Consensus        77 va~~t~----~PVIgVP~~~~~~~   96 (165)
                      +.+--.    ..+|||-.+...+.
T Consensus       200 ~~aa~e~g~~~~~IGvd~dq~~~~  223 (302)
T pfam02608       200 IQAAKELGLYGYVIGVDQDQSYLA  223 (302)
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCC
T ss_conf             999997199826999967655237


No 129
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=55.21  E-value=19  Score=17.80  Aligned_cols=118  Identities=21%  Similarity=0.228  Sum_probs=73.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCE
Q ss_conf             49999588169899999999999809982654530103879999889876535982999972676685113465224203
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPV   85 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PV   85 (165)
                      |-.+|.|||-  .+...+-+.+++++-.|++.-.++||+.+.+.+.++++.   ++. ++++.-..+  ......  +| 
T Consensus         2 k~i~iLGSTG--SIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~---P~~-v~~~d~~~~--~~l~~~--~~-   70 (385)
T COG0743           2 KKLTILGSTG--SIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFK---PKY-VVIADESAA--KELEDL--LP-   70 (385)
T ss_pred             CEEEEEECCC--CHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC---CCE-EEECCHHHH--HHHHHH--CC-
T ss_conf             4599971687--342889999996898579999734874999999999849---845-885576779--998753--14-


Q ss_pred             EEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCC--HHHHHHHHHHHHCCCH
Q ss_conf             66125776667500169984035698620443167531--2289999999706999
Q gi|254780157|r   86 LGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA--INASLLAVAILALDDK  139 (165)
Q Consensus        86 IgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~--~NAal~A~~Il~~~d~  139 (165)
                           ....+.|.+++-.+..++..--|.+--+|..|=  .=||+-+.+=+++-|+
T Consensus        71 -----~~~v~~G~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANK  121 (385)
T COG0743          71 -----GTEVLVGEEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANK  121 (385)
T ss_pred             -----CCEEEECHHHHHHHHHCCCCCEEEEHHHHHCCCHHHHHHHHCCCCEEECCH
T ss_conf             -----765864377899998467778774203101213779999982881243453


No 130
>KOG1208 consensus
Probab=54.95  E-value=20  Score=17.78  Aligned_cols=67  Identities=24%  Similarity=0.277  Sum_probs=42.2

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHH-----------------------------HHHHHH
Q ss_conf             988749999588169899999999999809982654530103879-----------------------------999889
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPD-----------------------------RLIEFA   52 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~-----------------------------~l~~~~   52 (165)
                      +.+.+|+||.|++|  .+..+.+..|..-|..    |.=++|+.+                             .+.+|+
T Consensus        32 ~~~~~~~vVTGans--GIG~eta~~La~~Ga~----Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa  105 (314)
T KOG1208          32 DLSGKVALVTGATS--GIGFETARELALRGAH----VVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFA  105 (314)
T ss_pred             CCCCCEEEEECCCC--CHHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH
T ss_conf             67787799958988--4379999999957998----99984777889999999971087763699987999999999999


Q ss_pred             HHHH--HCCCEEEEEEECCCCCCH
Q ss_conf             8765--359829999726766851
Q gi|254780157|r   53 KNAR--FEGFKLIIAGAGGAAHLP   74 (165)
Q Consensus        53 ~~~~--~~~~~viIa~AG~aaaLp   74 (165)
                      +..+  ....++.|--||.-+.-.
T Consensus       106 ~~~~~~~~~ldvLInNAGV~~~~~  129 (314)
T KOG1208         106 EEFKKKEGPLDVLINNAGVMAPPF  129 (314)
T ss_pred             HHHHHCCCCCCEEEECCCCCCCCC
T ss_conf             999851787658986552236765


No 131
>PRK09134 short chain dehydrogenase; Provisional
Probab=54.61  E-value=20  Score=17.74  Aligned_cols=65  Identities=18%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE------------------------EEEEHHCCHHHHHHHHHHHHH--
Q ss_conf             874999958816989999999999980998265------------------------453010387999988987653--
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA------------------------RIISAHRTPDRLIEFAKNARF--   57 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~------------------------~V~SAHR~p~~l~~~~~~~~~--   57 (165)
                      ..||++|.|+.+-  +...+++.|-+.|....+                        .+..=-+.++.+.++++...+  
T Consensus         8 ~~KvalVTGas~G--IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dl~~~~~~~~~v~~~~~~~   85 (256)
T PRK09134          8 APRAALVTGAARR--IGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAQVRALVARASAAL   85 (256)
T ss_pred             CCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             9997999488678--99999999998799899984999899999999999649918999755899999999999999982


Q ss_pred             CCCEEEEEEECCC
Q ss_conf             5982999972676
Q gi|254780157|r   58 EGFKLIIAGAGGA   70 (165)
Q Consensus        58 ~~~~viIa~AG~a   70 (165)
                      ..++++|.-||..
T Consensus        86 G~iDiLVnNAg~~   98 (256)
T PRK09134         86 GPITLLVNNASLF   98 (256)
T ss_pred             CCCCEEEECCCCC
T ss_conf             9987899887116


No 132
>PRK06914 short chain dehydrogenase; Provisional
Probab=54.26  E-value=20  Score=17.70  Aligned_cols=28  Identities=21%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             887499995881698999999999998099
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      |+.||++|.|+.|  -+...++..|.+-|.
T Consensus         1 l~~K~alITGass--GIG~a~A~~la~~G~   28 (280)
T PRK06914          1 MNKKIAIITGASS--GFGLLTTLELAKKDY   28 (280)
T ss_pred             CCCCEEEEECCCC--HHHHHHHHHHHHCCC
T ss_conf             9519899907344--999999999998799


No 133
>PRK06172 short chain dehydrogenase; Provisional
Probab=54.06  E-value=20  Score=17.68  Aligned_cols=67  Identities=13%  Similarity=0.104  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHH------------------------HCCCCEEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             9988749999588169899999999999------------------------8099826545301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLD------------------------TLGIDYEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~------------------------~~gI~~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      |+.+-||++|.|+.+-  +...++..|.                        ++|.+.... ..=-..++.+.+++++..
T Consensus         3 ~~L~gKvalVTGas~G--IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~~   79 (253)
T PRK06172          3 MTFSGQVALVTGGAAG--IGRATAIAFAREGAKVVVADRDAAGGEETVALIREAGGEALFI-ACDVTRDAEVKALVEKTI   79 (253)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHH
T ss_conf             8869998999375768--9999999999879989999798899999999999649937999-818999999999999999


Q ss_pred             H--CCCEEEEEEECCC
Q ss_conf             3--5982999972676
Q gi|254780157|r   57 F--EGFKLIIAGAGGA   70 (165)
Q Consensus        57 ~--~~~~viIa~AG~a   70 (165)
                      +  ..++++|--||..
T Consensus        80 ~~~G~iDiLVNNAGi~   95 (253)
T PRK06172         80 AAYGRLDYAFNNAGIE   95 (253)
T ss_pred             HHCCCCCEEEECCCCC
T ss_conf             9829999999898889


No 134
>PRK13936 phosphoheptose isomerase; Provisional
Probab=53.50  E-value=19  Score=17.90  Aligned_cols=46  Identities=24%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC---------CCCEEEECCCCC
Q ss_conf             9988987653598299997267668511346522---------420366125776
Q gi|254780157|r   48 LIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT---------SLPVLGVPIISQ   93 (165)
Q Consensus        48 l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t---------~~PVIgVP~~~~   93 (165)
                      ..+.+.+.-.+|-++|+++.|++++.+.-+++.-         .+|+|....+.+
T Consensus        32 aa~~i~~~~~~g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~~lpai~L~~d~~   86 (197)
T PRK13936         32 AVELMVQALLNEGKILACGNGGSAADAQHFSSELLNRFERERPSLPAIALTTDSS   86 (197)
T ss_pred             HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCH
T ss_conf             9999999998799899996878999999999998665412788875576436740


No 135
>PRK08263 short chain dehydrogenase; Provisional
Probab=53.22  E-value=21  Score=17.60  Aligned_cols=62  Identities=13%  Similarity=0.153  Sum_probs=35.2

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHC------------------------CHHHHHHHHHHHHH-
Q ss_conf             88749999588169899999999999809982654530103------------------------87999988987653-
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHR------------------------TPDRLIEFAKNARF-   57 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR------------------------~p~~l~~~~~~~~~-   57 (165)
                      |+-||++|.|+.|-  +...+++.|-+-|..    |+-.-|                        .++.+.+.+++..+ 
T Consensus         1 m~gKv~lITGassG--IG~a~A~~la~~G~~----Vv~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~   74 (275)
T PRK08263          1 MMGKVWFITGASRG--FGREWTEAALERGDR----VVATARDTATLADLAERYGDALLPLALDVTDRAAVFAAVEQAVKH   74 (275)
T ss_pred             CCCCEEEEECCCHH--HHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             98998999467439--999999999987998----999979899999999975996799996489999999999999998


Q ss_pred             -CCCEEEEEEECCC
Q ss_conf             -5982999972676
Q gi|254780157|r   58 -EGFKLIIAGAGGA   70 (165)
Q Consensus        58 -~~~~viIa~AG~a   70 (165)
                       ..++++|..||..
T Consensus        75 ~G~iDiLVNNAG~~   88 (275)
T PRK08263         75 FGRLDIVVNNAGYG   88 (275)
T ss_pred             HCCCCEEEECCCCC
T ss_conf             49987899888667


No 136
>PRK12463 chorismate synthase; Reviewed
Probab=52.60  E-value=21  Score=17.54  Aligned_cols=94  Identities=15%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             HHHHHHHHCCCCEEEEEEEHHC---------CHHHH--------------------HHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             9999999809982654530103---------87999--------------------988987653598299997267668
Q gi|254780157|r   22 YAADMLDTLGIDYEARIISAHR---------TPDRL--------------------IEFAKNARFEGFKLIIAGAGGAAH   72 (165)
Q Consensus        22 ~a~~~L~~~gI~~~~~V~SAHR---------~p~~l--------------------~~~~~~~~~~~~~viIa~AG~aaa   72 (165)
                      =|.+.|++|||+..-+|.+..-         +.+++                    .+.++.+..++         -  .
T Consensus       147 iAk~~L~~~GI~v~s~v~~IG~i~~~~~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~ak~~G---------D--S  215 (390)
T PRK12463        147 VAKQILKELGVEIAGHVLEIGGVKAKHISNLSIEEIQTITENSPVRCLDKTVEQEMMDAIDNAKSSG---------D--S  215 (390)
T ss_pred             HHHHHHHHCCCEEEEEEEEECCEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC---------C--C
T ss_conf             9999999659569889899877855777889999998777649765889999999999999998639---------9--9


Q ss_pred             CHHHHHHHCCCCEEEECCCCCC---CC-CCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             5113465224203661257766---67-50016998403569862044316753122899999997069
Q gi|254780157|r   73 LPGMIAAMTSLPVLGVPIISQT---LG-GIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALD  137 (165)
Q Consensus        73 Lpgvva~~t~~PVIgVP~~~~~---~~-G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~  137 (165)
                      |    .+-...=+.|||+--|.   |+ .+|+.|+-.-|  ++| |+-+|-++.||    .++++.+..
T Consensus       216 l----GG~ve~~a~gvP~GLG~pv~~d~kLda~LA~A~m--SIp-AvKGvE~G~GF----~~a~~~GSe  273 (390)
T PRK12463        216 I----GGIVEVIAEGMPIGVGSYVHYDRKLDAKLAGAIM--SIN-AFKGAEIGVGF----EAARQPGSK  273 (390)
T ss_pred             C----CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH--CCC-CCEEEEECCCH----HHHHCCCCC
T ss_conf             8----7499999985898888986776501299999862--778-50278863544----230078552


No 137
>PRK05382 chorismate synthase; Validated
Probab=52.26  E-value=22  Score=17.50  Aligned_cols=95  Identities=20%  Similarity=0.312  Sum_probs=53.7

Q ss_pred             HHHHHHHHCCCCEEEEEEEHH----------------------CCH-----HHHHHHHHHHHHCCCEEEEEEECCCCCCH
Q ss_conf             999999980998265453010----------------------387-----99998898765359829999726766851
Q gi|254780157|r   22 YAADMLDTLGIDYEARIISAH----------------------RTP-----DRLIEFAKNARFEGFKLIIAGAGGAAHLP   74 (165)
Q Consensus        22 ~a~~~L~~~gI~~~~~V~SAH----------------------R~p-----~~l~~~~~~~~~~~~~viIa~AG~aaaLp   74 (165)
                      =|...|+++||+..-+|.+.+                      |.|     +++.++++.+..++.              
T Consensus       139 iak~~L~~~gI~v~s~v~~IG~i~~~~~~~~~~~~~~~~~s~~rc~d~~~~~~m~~~I~~ak~~gD--------------  204 (357)
T PRK05382        139 VAKKLLAELGIEVRGYVVQIGGIEADFPDPSEEDWEEVEQNPVRCPDPEAEEEMEELIDEAKKEGD--------------  204 (357)
T ss_pred             HHHHHHHHCCCEEEEEEEEECCEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC--------------
T ss_conf             999999966968999999888898687687677898875387778998999999999999975499--------------


Q ss_pred             HHHHHHCCCCEEEECCCCCC--CCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             13465224203661257766--67500169984035698620443167531228999999970699
Q gi|254780157|r   75 GMIAAMTSLPVLGVPIISQT--LGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD  138 (165)
Q Consensus        75 gvva~~t~~PVIgVP~~~~~--~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d  138 (165)
                       -+.+....=|.|||+--|.  ++.+|+.|+-.-|  ++| |+-+|-.+.||+    ++++.+...
T Consensus       205 -SvGG~ve~~~~gvP~GLG~p~f~klda~La~a~m--sIp-AvKgvEfG~Gf~----~a~~~GSe~  262 (357)
T PRK05382        205 -SIGGVVEVVAEGVPAGLGEPVFDKLDADLAHALM--SIN-AVKGVEIGDGFE----AARLRGSEH  262 (357)
T ss_pred             -CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH--CCC-CEEEEEECCHHH----HHHCCCCCC
T ss_conf             -9872899999788989885001632578988861--766-423689645165----752675200


No 138
>PRK00430 fis DNA-binding protein Fis; Provisional
Probab=51.50  E-value=12  Score=19.22  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=20.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999997069999999999999
Q gi|254780157|r  127 SLLAVAILALDDKELTDRLNEWR  149 (165)
Q Consensus       127 al~A~~Il~~~d~~i~~kl~~~r  149 (165)
                      -.-|++|||++-.-+++||++|-
T Consensus        74 qskAA~~LGInR~TLRkKlk~yg   96 (98)
T PRK00430         74 QTRAALMLGINRGTLRKKLKKYG   96 (98)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             99999997877889999999848


No 139
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=51.39  E-value=22  Score=17.41  Aligned_cols=54  Identities=13%  Similarity=0.061  Sum_probs=29.9

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC--CCEEEEEEECCC
Q ss_conf             9899999999999809982654530103879999889876535--982999972676
Q gi|254780157|r   16 DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE--GFKLIIAGAGGA   70 (165)
Q Consensus        16 D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~--~~~viIa~AG~a   70 (165)
                      |.+-.++....+++.|-.+... ..-...++.+.+.+++..++  .++++|..||..
T Consensus        36 ~~~~~~~~~~~l~~~g~~~~~~-~~Dv~d~~~v~~~v~~~~~~~G~iDilvnnAg~~   91 (250)
T TIGR03206        36 NREAAEKVAADIRAKGGNAQAF-ACDITDRDSVDTAVAAAEQALGPVDVLVNNAGWD   91 (250)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEE-EECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             8899999999999539928999-9448999999999999999759997999898889


No 140
>pfam01264 Chorismate_synt Chorismate synthase.
Probab=50.94  E-value=23  Score=17.37  Aligned_cols=95  Identities=20%  Similarity=0.280  Sum_probs=52.5

Q ss_pred             HHHHHHHHCCCCEEEEEEEHHC--CH-------------------------HHHHHHHHHHHHCCCEEEEEEECCCCCCH
Q ss_conf             9999999809982654530103--87-------------------------99998898765359829999726766851
Q gi|254780157|r   22 YAADMLDTLGIDYEARIISAHR--TP-------------------------DRLIEFAKNARFEGFKLIIAGAGGAAHLP   74 (165)
Q Consensus        22 ~a~~~L~~~gI~~~~~V~SAHR--~p-------------------------~~l~~~~~~~~~~~~~viIa~AG~aaaLp   74 (165)
                      =|.+.|++|||...-+|.+...  .+                         +++.++++++..++.              
T Consensus       131 iAk~~L~~~gI~i~s~v~~IG~i~~~~~~~~~~~~~~i~~s~~rc~d~~~~~~m~~~I~~ak~~gD--------------  196 (346)
T pfam01264       131 VAKKLLKELGIEVRSYVSSIGGIEAVEADPAEEDFEEVEKSPVRCPDPEAEERMEELIDAAKKEGD--------------  196 (346)
T ss_pred             HHHHHHHHCCCEEEEEEEEECCEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC--------------
T ss_conf             999999965968999999888897677787577899875587658998999999999999975399--------------


Q ss_pred             HHHHHHCCCCEEEECCCCCC--CCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             13465224203661257766--67500169984035698620443167531228999999970699
Q gi|254780157|r   75 GMIAAMTSLPVLGVPIISQT--LGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD  138 (165)
Q Consensus        75 gvva~~t~~PVIgVP~~~~~--~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d  138 (165)
                       -+.+....=+-|||+--|.  |+.+|+.|+-.-|  ++| |+-+|-.+.    +.-++++.+...
T Consensus       197 -SlGG~ve~~~~gvP~GLG~p~fdkLda~La~alm--SIp-AvKgvEfG~----Gf~~a~~~GSe~  254 (346)
T pfam01264       197 -SLGGVVEVVARGVPAGLGEPVFDKLDADLAKALM--SIP-AVKGVEIGD----GFAAARMRGSEV  254 (346)
T ss_pred             -CCCCEEEEEEECCCCCCCCHHHCCCHHHHHHHHH--CCC-CEEEEEECC----HHHHHHCCCCCC
T ss_conf             -9871899999788988874210524379998861--766-423789644----065542774425


No 141
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells.  These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=50.46  E-value=23  Score=17.32  Aligned_cols=62  Identities=21%  Similarity=0.237  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             99999999999809982654530103879999889876535982999972676685113465224
Q gi|254780157|r   18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus        18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      ...+++....+.+|++++..+...+. |  -..+++.+++.+++.||-+.-+-..+...+-|.++
T Consensus        56 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~I~~~a~e~~~DlIVmG~~g~~~~~~~~lGSv~  117 (132)
T cd01988          56 KLLRQAERIAASLGVPVHTIIRIDHD-I--ASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVI  117 (132)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCC-H--HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf             99999999998769956999997799-7--99999999984999999837999875424447579


No 142
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=50.30  E-value=23  Score=17.30  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=13.7

Q ss_pred             CCEEEEE-EECCCCCCHHHHHHHCC
Q ss_conf             9829999-72676685113465224
Q gi|254780157|r   59 GFKLIIA-GAGGAAHLPGMIAAMTS   82 (165)
Q Consensus        59 ~~~viIa-~AG~aaaLpgvva~~t~   82 (165)
                      +.++||. +.|++.-+..++.....
T Consensus        47 ~ADlii~~G~~~E~~l~~~~~~~~~   71 (272)
T pfam01297        47 KADLVVYNGAGLEPWLDKLLASLAN   71 (272)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf             6999999298716789999985689


No 143
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=50.28  E-value=18  Score=18.00  Aligned_cols=33  Identities=18%  Similarity=0.132  Sum_probs=24.9

Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC
Q ss_conf             988987653598299997267668511346522
Q gi|254780157|r   49 IEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT   81 (165)
Q Consensus        49 ~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t   81 (165)
                      .+.+.+...+|-++|+++.|+|++.+.-.++..
T Consensus        34 a~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~dl   66 (192)
T PRK00414         34 AVLIADSFKAGGKVLSCGNGGSHCDAMHFAEEL   66 (192)
T ss_pred             HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             999999998799799996858899999999987


No 144
>PRK13937 phosphoheptose isomerase; Provisional
Probab=50.25  E-value=19  Score=17.84  Aligned_cols=45  Identities=31%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC---------CCCEEEECCC
Q ss_conf             99988987653598299997267668511346522---------4203661257
Q gi|254780157|r   47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT---------SLPVLGVPII   91 (165)
Q Consensus        47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t---------~~PVIgVP~~   91 (165)
                      ++.+.+.+.-.++-++|+++.|++++.+.-.+..-         .+|+|....+
T Consensus        30 ~~a~~i~~~~~~g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d   83 (192)
T PRK13937         30 KIAEALIEALASGGKLLLCGNGGSAADAQHIAAELVGRYKKERPALPAIALTTD   83 (192)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC
T ss_conf             999999999987998999968631888999999996413557898535776788


No 145
>pfam02514 CobN-Mg_chel CobN/Magnesium Chelatase. This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN is implicated in the conversion of hydrogenobyrinic acid a,c-diamide to cobyrinic acid. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis.
Probab=49.47  E-value=24  Score=17.22  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=63.1

Q ss_pred             CCCEEEEEECC----CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC--H-H
Q ss_conf             88749999588----169899999999999809982654530103879999889876535982999972676685--1-1
Q gi|254780157|r    3 IAPPVAIIMGS----QSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL--P-G   75 (165)
Q Consensus         3 ~~pkV~Ii~GS----~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL--p-g   75 (165)
                      .+|.|+|+...    ..|+.+.......|++-|+....-.+|. +....+.+|........++++|..-+.+-.-  + .
T Consensus        67 ~~p~Vgilfyr~~~~~g~~~~idali~~Le~~G~nvipvf~~~-~~~~~~~~~~~~~~~~~vd~iI~~~~F~l~~~~~~~  145 (1064)
T pfam02514        67 DAPTVGILFYRSYLLAGDTAHIDALIRALEARGLNVIPVFSDL-DSREAVRDFFFRDGEPKVDAIINLTGFSLVGGPAEN  145 (1064)
T ss_pred             CCCEEEEEECHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECC-CCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf             9987999965556643984899999999997899699999457-550999999984799887389973842366888216


Q ss_pred             HHH--HHCCCCEEEECCC-CC-------CCCCCCCHHHHHH
Q ss_conf             346--5224203661257-76-------6675001699840
Q gi|254780157|r   76 MIA--AMTSLPVLGVPII-SQ-------TLGGIDSLLSIVQ  106 (165)
Q Consensus        76 vva--~~t~~PVIgVP~~-~~-------~~~G~dallS~vq  106 (165)
                      .+.  .....|||-.-+. ..       +..|++.+....|
T Consensus       146 ~~~~l~~lnVPvl~~i~~~~~s~~~W~~s~~Gl~~~~~~~~  186 (1064)
T pfam02514       146 GVELLKKLDVPVLQAIPLYFQSREEWEASSRGLSPLDLAMQ  186 (1064)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCHHHHHHH
T ss_conf             77899877998899752589999999738899797987782


No 146
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=49.37  E-value=24  Score=17.21  Aligned_cols=67  Identities=13%  Similarity=0.091  Sum_probs=35.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------EEEHHCCHHHHHHHHHHHHH-
Q ss_conf             88749999588169899999999999809982654------------------------53010387999988987653-
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------IISAHRTPDRLIEFAKNARF-   57 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------V~SAHR~p~~l~~~~~~~~~-   57 (165)
                      |+.||++|.|+.+  -+...+++.|.+-|...-..                        +..--+.++.+....+...+ 
T Consensus         1 L~~KvalVTGgs~--GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~i~~~   78 (246)
T PRK12938          1 MSQRIAYVTGGMG--GIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAE   78 (246)
T ss_pred             CCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             9509899918586--99999999999879989994799817899999999845997899967879999999999999997


Q ss_pred             -CCCEEEEEEECCCC
Q ss_conf             -59829999726766
Q gi|254780157|r   58 -EGFKLIIAGAGGAA   71 (165)
Q Consensus        58 -~~~~viIa~AG~aa   71 (165)
                       ..++++|-.||...
T Consensus        79 ~g~idiLVNNAG~~~   93 (246)
T PRK12938         79 VGEIDVLVNNAGITR   93 (246)
T ss_pred             CCCCCEEEECCCCCC
T ss_conf             599989998988899


No 147
>PRK05867 short chain dehydrogenase; Provisional
Probab=49.34  E-value=24  Score=17.21  Aligned_cols=48  Identities=25%  Similarity=0.215  Sum_probs=27.1

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             988749999588169899999999999809982654530103879999889876
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      +++-||++|.|+.+  -+...+++.|.+.|-..    +-.-|..+++.+..++.
T Consensus         6 ~L~gKvalVTGas~--GIG~aiA~~la~~Ga~V----~i~~r~~~~~~~~~~ei   53 (253)
T PRK05867          6 DLHGKRALITGAST--GIGKRVALAYVEAGAQV----AIAARHLDALEKLADEI   53 (253)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEE----EEEECCHHHHHHHHHHH
T ss_conf             88999899979565--99999999999869999----99979889999999999


No 148
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.31  E-value=24  Score=17.21  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=34.9

Q ss_pred             CCCCEEEEEECCCC----------------------CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--
Q ss_conf             98874999958816----------------------989999999999980998265453010387999988987653--
Q gi|254780157|r    2 NIAPPVAIIMGSQS----------------------DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--   57 (165)
Q Consensus         2 ~~~pkV~Ii~GS~S----------------------D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--   57 (165)
                      +++-||++|.|+.|                      |..-.++..+.++.+|.......+ =-..++.+.+.++...+  
T Consensus         3 sL~gKvalITGas~GIG~aiA~~la~~Ga~V~l~~r~~~~l~~~~~~i~~~g~~~~~~~~-Dvtd~~~v~~~v~~~~~~~   81 (238)
T PRK07666          3 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARSEENLKAVAKEVEAEGVKAVIATA-DVSDYEEVTTAIETLKNGL   81 (238)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE-ECCCHHHHHHHHHHHHHHH
T ss_conf             999998999163778999999999987998999989999999999999955992799993-0799999999999999981


Q ss_pred             CCCEEEEEEECCC
Q ss_conf             5982999972676
Q gi|254780157|r   58 EGFKLIIAGAGGA   70 (165)
Q Consensus        58 ~~~~viIa~AG~a   70 (165)
                      ..++++|--||..
T Consensus        82 G~iDiLVNNAGi~   94 (238)
T PRK07666         82 GSIDILINNAGIS   94 (238)
T ss_pred             CCCCEEEECCCCC
T ss_conf             9987899847457


No 149
>PRK07707 consensus
Probab=48.89  E-value=24  Score=17.16  Aligned_cols=46  Identities=13%  Similarity=0.195  Sum_probs=28.2

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             749999588169899999999999809982654530103879999889876
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      .||++|.|+.+  -+...+++.|-+-|...-   +..+|..+++.+..++.
T Consensus         2 ~KvalVTG~s~--GIG~aia~~la~~Ga~V~---i~~~~~~~~~~~~~~~~   47 (239)
T PRK07707          2 KKYALVTGASG--GIGQAISKQLAQDGYTVY---LHYNNNEEKVNELQEEL   47 (239)
T ss_pred             CCEEEEECCCC--HHHHHHHHHHHHCCCEEE---EECCCCHHHHHHHHHHH
T ss_conf             98999966887--899999999998799899---98399989999999984


No 150
>PRK06227 consensus
Probab=48.82  E-value=24  Score=17.16  Aligned_cols=67  Identities=21%  Similarity=0.233  Sum_probs=37.2

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC------------------------CEEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             99887499995881698999999999998099------------------------826545301038799998898765
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI------------------------DYEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI------------------------~~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      |+++-||++|.|+.|-  +...+++.|.+.|-                        +.... ..=-+.++.+.+++++..
T Consensus         1 m~L~gKvalVTGas~G--IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~~   77 (256)
T PRK06227          1 MNLSGKVAIVTGGGQG--IGAAIAQTFAENGAKVVIADIDEEAGLEREEMLRSNGLDALFV-KTDVSDEEDVKNMVRKTV   77 (256)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHH
T ss_conf             9899988999586688--9999999999879999999698889999999999559918999-816899999999999999


Q ss_pred             H--CCCEEEEEEECCC
Q ss_conf             3--5982999972676
Q gi|254780157|r   57 F--EGFKLIIAGAGGA   70 (165)
Q Consensus        57 ~--~~~~viIa~AG~a   70 (165)
                      +  ..++++|..||..
T Consensus        78 ~~~G~iDiLVNNAGi~   93 (256)
T PRK06227         78 ERYGGIDILINNAGIF   93 (256)
T ss_pred             HHCCCCCEEEECCCCC
T ss_conf             9829997999899899


No 151
>PRK10936 periplasmic sensory protein associated with the TorRS two-component regulatory system; Provisional
Probab=48.54  E-value=25  Score=17.13  Aligned_cols=82  Identities=12%  Similarity=0.070  Sum_probs=58.4

Q ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             4999958816989---9999999999809982654530103879999889876535982999972676685113465224
Q gi|254780157|r    6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus         6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      |+++++-+-+|--   +-..+.+..+++|++..+.-+.--..+.+-.+.++++..++++.||-.+=-+.++. .....-.
T Consensus        47 ki~~~~p~lkd~yW~~v~~G~~~~Ak~lGv~l~v~~a~~~~d~~~Q~~qie~~i~~~vDAIil~~vd~~a~~-~~~~~ag  125 (340)
T PRK10936         47 KLCALYPHLKDSYWLSVNYGLVQEAKRLGVDLKVLEAGGYYNLATQQQQLEQCVAWGADAILLGAVTPDGPD-LQLQAAN  125 (340)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHCC
T ss_conf             799980688886999999999999998098699985899889999999999999759999998678834115-6898589


Q ss_pred             CCEEEE
Q ss_conf             203661
Q gi|254780157|r   83 LPVLGV   88 (165)
Q Consensus        83 ~PVIgV   88 (165)
                      .|||.+
T Consensus       126 IPVI~~  131 (340)
T PRK10936        126 IPVIAL  131 (340)
T ss_pred             CCEEEE
T ss_conf             978999


No 152
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=48.53  E-value=12  Score=19.23  Aligned_cols=30  Identities=27%  Similarity=0.246  Sum_probs=24.6

Q ss_pred             HHCCCCEEEECCCCCCCCCCCCHHHHHHCCC
Q ss_conf             5224203661257766675001699840356
Q gi|254780157|r   79 AMTSLPVLGVPIISQTLGGIDSLLSIVQMPA  109 (165)
Q Consensus        79 ~~t~~PVIgVP~~~~~~~G~dallS~vqMP~  109 (165)
                      -.-..|+|-++.++|. -.+.+++|..|||.
T Consensus       175 ~~~k~PlIi~saSGGA-RMQEGilSLMQMaK  204 (305)
T CHL00174        175 TNESLPLIIVCASGGA-RMQEGSLSLMQMAK  204 (305)
T ss_pred             HHCCCCEEEEECCCCC-CCCCCHHHHHHHHH
T ss_conf             9739978999078763-43462778987799


No 153
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=48.43  E-value=25  Score=17.12  Aligned_cols=78  Identities=8%  Similarity=0.127  Sum_probs=47.9

Q ss_pred             EEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-CC
Q ss_conf             999958816989---99999999998099826545301038799998898765359829999726766851134652-24
Q gi|254780157|r    7 VAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-TS   82 (165)
Q Consensus         7 V~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-t~   82 (165)
                      |++++.+-++--   +.+.+...+++.|  |.+-++..+..+++-.++++....++++-+|.. +.+... ..+..+ -.
T Consensus         2 IGvivp~i~npf~~~~~~~i~~~~~~~G--y~l~l~~s~~~~~~e~~~l~~l~~~~vdGiIi~-~~~~~~-~~i~~~~~~   77 (260)
T cd06286           2 IGVVLPYINHPYFSQLVDGIEKAALKHG--YKVVLLQTNYDKEKELEYLELLKTKQVDGLILC-SRENDW-EVIEPYTKY   77 (260)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCH-HHHHHHHHC
T ss_conf             8999789878899999999999999869--989999899998999999999984799999993-687998-999999864


Q ss_pred             CCEEEE
Q ss_conf             203661
Q gi|254780157|r   83 LPVLGV   88 (165)
Q Consensus        83 ~PVIgV   88 (165)
                      .||+-+
T Consensus        78 ~pvV~~   83 (260)
T cd06286          78 GPIVLC   83 (260)
T ss_pred             CCEEEE
T ss_conf             999999


No 154
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=47.56  E-value=26  Score=17.03  Aligned_cols=71  Identities=15%  Similarity=0.197  Sum_probs=39.1

Q ss_pred             CCCCEEEEEECCCC-----------------------CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH-
Q ss_conf             98874999958816-----------------------989999999999980998265453010387999988987653-
Q gi|254780157|r    2 NIAPPVAIIMGSQS-----------------------DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF-   57 (165)
Q Consensus         2 ~~~pkV~Ii~GS~S-----------------------D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~-   57 (165)
                      |++-||++|.|+.+                       |..-.++..+.+++.|.++.... .=-+..+.+.++++...+ 
T Consensus         4 ~L~gKvalVTGa~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~Dv~~~~~v~~~v~~~~~~   82 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDESEANDVAEEIKKVGGEAIAVK-GDVTVESDVVNLIQSAVKE   82 (261)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHH
T ss_conf             899998999684778999999999987999999728987899999999996599389998-2799999999999999998


Q ss_pred             -CCCEEEEEEECCCCCC
Q ss_conf             -5982999972676685
Q gi|254780157|r   58 -EGFKLIIAGAGGAAHL   73 (165)
Q Consensus        58 -~~~~viIa~AG~aaaL   73 (165)
                       ..++++|--||....-
T Consensus        83 ~G~iDiLVNNAg~~~~~   99 (261)
T PRK08936         83 FGTLDVMINNAGIENAV   99 (261)
T ss_pred             HCCCCEEEECCCCCCCC
T ss_conf             29988999899789998


No 155
>PRK01905 DNA-binding protein Fis; Provisional
Probab=47.45  E-value=14  Score=18.70  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999997069999999999999
Q gi|254780157|r  127 SLLAVAILALDDKELTDRLNEWR  149 (165)
Q Consensus       127 al~A~~Il~~~d~~i~~kl~~~r  149 (165)
                      -.-|++|||++---+++|+++|.
T Consensus        53 Q~kAA~~LGinR~TLRkKlk~yg   75 (77)
T PRK01905         53 QSLAAEYLGINRNTLRKKLQQHG   75 (77)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             99999997865888999999808


No 156
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II; InterPro: IPR011910    This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.; GO: 0016757 transferase activity transferring glycosyl groups, 0009103 lipopolysaccharide biosynthetic process.
Probab=47.26  E-value=26  Score=17.01  Aligned_cols=76  Identities=12%  Similarity=0.121  Sum_probs=52.0

Q ss_pred             EEEECCCCCHHHHHH-HHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEE
Q ss_conf             999588169899999-9999998099826545301038799998898765359829999726766851134652242036
Q gi|254780157|r    8 AIIMGSQSDWKIMKY-AADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVL   86 (165)
Q Consensus         8 ~Ii~GS~SD~~~~~~-a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVI   86 (165)
                      +++.||..|.++.++ +.+.+..--.+|-.+-++..+.-+.+. ++..     ++.+|+=.-   .|== ||+=..+|||
T Consensus       227 V~lFGS~kD~~~~~~fI~~~~~~~~~~~~~NLaG~T~L~EAvd-Lia~-----a~avV~NDS---GLMH-VAAAL~rPlV  296 (361)
T TIGR02195       227 VVLFGSKKDKPVGDEFIEALAPGELREYCDNLAGETSLDEAVD-LIAL-----AKAVVSNDS---GLMH-VAAALNRPLV  296 (361)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHH-----CCEEEECCH---HHHH-HHHHCCCCEE
T ss_conf             9984284557899999998634468899741047888889999-9871-----560121560---6799-9996279889


Q ss_pred             EECCCCC
Q ss_conf             6125776
Q gi|254780157|r   87 GVPIISQ   93 (165)
Q Consensus        87 gVP~~~~   93 (165)
                      ||==+++
T Consensus       297 AlYGsTs  303 (361)
T TIGR02195       297 ALYGSTS  303 (361)
T ss_pred             EEECCCC
T ss_conf             9736856


No 157
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=47.21  E-value=26  Score=17.00  Aligned_cols=47  Identities=17%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             CHHHH-HHHHHHHHHCCCEEEEEEECCCC-CC---HHHHHHHCCCCEEEECC
Q ss_conf             87999-98898765359829999726766-85---11346522420366125
Q gi|254780157|r   44 TPDRL-IEFAKNARFEGFKLIIAGAGGAA-HL---PGMIAAMTSLPVLGVPI   90 (165)
Q Consensus        44 ~p~~l-~~~~~~~~~~~~~viIa~AG~aa-aL---pgvva~~t~~PVIgVP~   90 (165)
                      +|..+ ..+++.+-..+...++..-.... ++   -..+++.|..||||+--
T Consensus        46 ~P~s~l~~lC~~l~~~~v~~vv~~~~~~~e~~a~~ldf~S~q~~iPvigi~g   97 (362)
T cd06378          46 DPKSILTQLCDLLSTTKVHGVVFEDDTDQEAVAQILDFISAQTFLPILGIHG   97 (362)
T ss_pred             CHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             8789999999998645348999967988522577887654410277899705


No 158
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=46.93  E-value=26  Score=16.97  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99887499995881698999999999998099
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      |+.+-|+++|.|+.+  -+.+.+++.|.+.|.
T Consensus         2 ~~l~gK~alITG~s~--GIG~aia~~~a~~Ga   31 (245)
T PRK12936          2 FDLTGRKALVTGASG--GIGEEIARLLHAQGA   31 (245)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCC
T ss_conf             388999899927476--899999999998699


No 159
>PRK12827 short chain dehydrogenase; Provisional
Probab=46.75  E-value=26  Score=16.95  Aligned_cols=68  Identities=16%  Similarity=0.092  Sum_probs=38.7

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---------------------------HCCHHHHHHHHHH
Q ss_conf             9887499995881698999999999998099826545301---------------------------0387999988987
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---------------------------HRTPDRLIEFAKN   54 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---------------------------HR~p~~l~~~~~~   54 (165)
                      +++-||++|.|+.+  -+...++..|.+.|-...+.-.+.                           -+.++.+.+.++.
T Consensus         3 ~L~gKvalVTGas~--GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~v~~   80 (251)
T PRK12827          3 SLDSRRVLITGGSG--GLGRAIAVRLAADGADVIVLDIHPMRGRAEAEAVAALIEAAGGKALGLAFDVRDFAATRAALDA   80 (251)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf             98998899968255--8999999999987998999848885328999999999996498499999038999999999999


Q ss_pred             HHH--CCCEEEEEEECCCC
Q ss_conf             653--59829999726766
Q gi|254780157|r   55 ARF--EGFKLIIAGAGGAA   71 (165)
Q Consensus        55 ~~~--~~~~viIa~AG~aa   71 (165)
                      ..+  ..++++|..||...
T Consensus        81 ~~~~~G~iDiLVNnAG~~~   99 (251)
T PRK12827         81 GVEEFGRLDILVNNAGIAT   99 (251)
T ss_pred             HHHHCCCCCEEEECCCCCC
T ss_conf             9998399979998998899


No 160
>PRK06138 short chain dehydrogenase; Provisional
Probab=46.59  E-value=26  Score=16.94  Aligned_cols=68  Identities=18%  Similarity=0.195  Sum_probs=38.6

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE---------------------E-EEEHHCCHHHHHHHHHHHHH-
Q ss_conf             998874999958816989999999999980998265---------------------4-53010387999988987653-
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA---------------------R-IISAHRTPDRLIEFAKNARF-   57 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~---------------------~-V~SAHR~p~~l~~~~~~~~~-   57 (165)
                      |+++-||++|.|+.|-  +.+.+++.|-+.|-...+                     . +..=-..++.+.+++++..+ 
T Consensus         1 m~L~gKvalVTGas~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   78 (252)
T PRK06138          1 MRLAGRVAIVTGAGSG--IGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAAR   78 (252)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             9889988999474679--99999999998799899996887899999999837991999994289999999999999998


Q ss_pred             -CCCEEEEEEECCC
Q ss_conf             -5982999972676
Q gi|254780157|r   58 -EGFKLIIAGAGGA   70 (165)
Q Consensus        58 -~~~~viIa~AG~a   70 (165)
                       ..++++|-.||..
T Consensus        79 ~G~iDiLVNNAG~~   92 (252)
T PRK06138         79 WGRLDVLVNNAGFG   92 (252)
T ss_pred             CCCCCEEEECCCCC
T ss_conf             29998999898899


No 161
>pfam01522 Polysacc_deac_1 Polysaccharide deacetylase. This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan.
Probab=46.18  E-value=27  Score=16.90  Aligned_cols=62  Identities=13%  Similarity=0.092  Sum_probs=41.6

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHH--CCHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             8874999958816989999999999980998265453010--3879999889876535982999972676
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAH--RTPDRLIEFAKNARFEGFKLIIAGAGGA   70 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAH--R~p~~l~~~~~~~~~~~~~viIa~AG~a   70 (165)
                      ..+|++.|.=-+........+..+|++++++....|.+.+  +.|+.+.++.+    +|  .-|+.=|.+
T Consensus         3 ~~~k~v~lTfDDG~~~~~~~~l~~L~~~~i~aTfFv~~~~i~~~~~~~~~l~~----~G--~eig~Ht~~   66 (123)
T pfam01522         3 TPKKSVALTFDDGPPDNTPRILDVLKKYGVPATFFVIGGNAETYPELVRRMVA----EG--HEIGNHTYS   66 (123)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH----CC--CEEEECCCC
T ss_conf             99978999874797351999999999829986997247645368999999998----79--987421045


No 162
>pfam00532 Peripla_BP_1 family. This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (pfam00356).
Probab=45.81  E-value=27  Score=16.86  Aligned_cols=80  Identities=14%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH--HHH
Q ss_conf             4999958816989---99999999998099826545301038799998898765359829999726766851134--652
Q gi|254780157|r    6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI--AAM   80 (165)
Q Consensus         6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv--a~~   80 (165)
                      .++++.-.-++--   +++.+.+.+++.|  |.+-+++.+..+++..++++.+..++++-+|.. +.....+-..  ...
T Consensus         3 TIGvivpdi~npff~~i~~gie~~a~~~G--y~~ll~~t~~~~~~e~~~l~~l~~~~vDGiIi~-~~~~~~~~~~~~~~~   79 (281)
T pfam00532         3 KLGALVPQLDEPFFQDLVKGITKAAKDHG--FDVFLLAVGDGEDTLTNAIDLLLASGADGIIIT-TPAPSGDDITAKAEG   79 (281)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHH
T ss_conf             99999798861899999999999999839--989999799998999999999996599989993-688984999999985


Q ss_pred             CCCCEEEE
Q ss_conf             24203661
Q gi|254780157|r   81 TSLPVLGV   88 (165)
Q Consensus        81 t~~PVIgV   88 (165)
                      ...||+-+
T Consensus        80 ~~iPvV~~   87 (281)
T pfam00532        80 YGIPVIAA   87 (281)
T ss_pred             CCCCEEEE
T ss_conf             79978999


No 163
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.60  E-value=27  Score=16.84  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             EEEEEECCC-CC--HHHH-HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC
Q ss_conf             499995881-69--8999-9999999980998265453010387999988987653598299997267668511346522
Q gi|254780157|r    6 PVAIIMGSQ-SD--WKIM-KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT   81 (165)
Q Consensus         6 kV~Ii~GS~-SD--~~~~-~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t   81 (165)
                      |++.++.|. +|  |.-+ +.+.+..+++|++.++. .+..-.+..-.+.++++..++++.||...--+.++...+.-..
T Consensus         1 ki~~v~~~~~~npf~~~v~~G~~~aA~~~Gv~v~~~-~~~~~d~~~Q~~~i~~~i~~~vDaIii~p~~~~~~~~~i~~a~   79 (271)
T cd06312           1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYR-GPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAV   79 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEE-ECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             989992799998389999999999999969989999-6898999999999999997599989993788300269999999


Q ss_pred             --CCCEEEE
Q ss_conf             --4203661
Q gi|254780157|r   82 --SLPVLGV   88 (165)
Q Consensus        82 --~~PVIgV   88 (165)
                        -.|||.+
T Consensus        80 ~agIpVv~~   88 (271)
T cd06312          80 AAGIPVISF   88 (271)
T ss_pred             HCCCEEEEE
T ss_conf             659869999


No 164
>pfam06253 MTTB Trimethylamine methyltransferase (MTTB). This family consists of several trimethylamine methyltransferase (MTTB) (EC:2.1.1.-) proteins from numerous Rhizobium and Methanosarcina species.
Probab=45.39  E-value=28  Score=16.82  Aligned_cols=96  Identities=22%  Similarity=0.237  Sum_probs=62.4

Q ss_pred             EECCCCCHHHHHHHHHHHHH-CCCC----------EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-----
Q ss_conf             95881698999999999998-0998----------2654530103879999889876535982999972676685-----
Q gi|254780157|r   10 IMGSQSDWKIMKYAADMLDT-LGID----------YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL-----   73 (165)
Q Consensus        10 i~GS~SD~~~~~~a~~~L~~-~gI~----------~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL-----   73 (165)
                      ++++..+....+.+.+.++. +|.+          ..+.+.|.-|.-....+-+..+-..|.-++|.-.+++++-     
T Consensus       191 ~~~~~~~~e~v~d~ieM~~i~~G~ee~~~~~P~~~~~in~~SPL~~d~~~~~~l~~~a~~gqpv~i~p~~laGAtaPvT~  270 (505)
T pfam06253       191 FMGSATGRERAEDGIEMARIARGIEDFVRANPVILTIINVNSPLVFDETMAGGLIAYAEHGQPVVITPFTLAGAMAPVTI  270 (505)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCH
T ss_conf             48751876758999999999768788897396588764478876528899999999997699789601321688876538


Q ss_pred             ------------HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf             ------------1134652242036612577666750016998403569862
Q gi|254780157|r   74 ------------PGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPV  113 (165)
Q Consensus        74 ------------pgvva~~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpv  113 (165)
                                  +|++-++...|  |.|+--|.      ..|++-|-+|-|.
T Consensus       271 AGalaq~~AE~LaGi~l~Qli~P--GaPviyG~------~~~~~DmrtGa~~  314 (505)
T pfam06253       271 AGALAQQNAEALAGVALTQLVRP--GAPVIYGT------FTSNVDMKSGAPA  314 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC--CCCEEECC------CCCCEECCCCCCC
T ss_conf             99999999999999999997289--99779788------7652105768888


No 165
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=45.36  E-value=28  Score=16.82  Aligned_cols=77  Identities=16%  Similarity=0.167  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf             99999999998099826545301038799998898765359829999726766851134652242036612577666750
Q gi|254780157|r   19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGI   98 (165)
Q Consensus        19 ~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~   98 (165)
                      +.+-+..+-++++|+..-+....+=+-+++.++++++++.|+.=|.|==|       =....+.++    |..++.-..-
T Consensus        61 T~~~~~~I~~~~~~~~v~HLtC~~~t~~e~~~~L~~y~~~Gi~~ilALRG-------D~p~~~~~~----~~~~~~~yA~  129 (302)
T TIGR00676        61 TVRIVRRIKKETGIPTVPHLTCIGSTREEIEEILREYRELGIRNILALRG-------DPPDETDFE----PAPGGFKYAS  129 (302)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC-------CCCCCCCCC----CCCCCCCCHH
T ss_conf             89999999873288630000023689899999999998748867987437-------688888656----5887667768


Q ss_pred             CCHHHHHHC
Q ss_conf             016998403
Q gi|254780157|r   99 DSLLSIVQM  107 (165)
Q Consensus        99 dallS~vqM  107 (165)
                      | |-+.+.-
T Consensus       130 e-LV~~Ir~  137 (302)
T TIGR00676       130 E-LVEFIRS  137 (302)
T ss_pred             H-HHHHHHH
T ss_conf             9-9999983


No 166
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=45.25  E-value=28  Score=16.80  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=50.6

Q ss_pred             EEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             99995--8816989999999999980998265453010387999988987653598299997267
Q gi|254780157|r    7 VAIIM--GSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG   69 (165)
Q Consensus         7 V~Ii~--GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~   69 (165)
                      |.|-.  |+.+--.+.+-+..+.+++|++.-.+..+..++.+++.+++..+...|++=|.|.-|=
T Consensus        56 vSVTyGAggstr~~T~~i~~~i~~~~~i~~~~HLTCvg~t~~~i~~~L~~~~~~GI~nILALRGD  120 (296)
T PRK09432         56 VSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLTCIDATPEELRTIAKDYWNNGIRHIVALRGD  120 (296)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             99607989977356999999999874998112666269999999999999997597548654898


No 167
>pfam00462 Glutaredoxin Glutaredoxin.
Probab=45.20  E-value=28  Score=16.80  Aligned_cols=42  Identities=19%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             ECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHH
Q ss_conf             58816989999999999980998265453010387999988987
Q gi|254780157|r   11 MGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKN   54 (165)
Q Consensus        11 ~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~   54 (165)
                      +=|.+.=|...++...|+++|++|+..-+.-  .++...++.+.
T Consensus         3 iys~~~C~~C~~ak~~L~~~~i~y~~~~v~~--~~~~~~~l~~~   44 (60)
T pfam00462         3 LFTKPTCPFCKRAKRLLKSLGVKFEEIDVDE--DPEIREELKEL   44 (60)
T ss_pred             EEECCCCHHHHHHHHHHHHCCCCCEEEECCC--CHHHHHHHHHH
T ss_conf             9938989739999999998099753321589--99999999998


No 168
>KOG4626 consensus
Probab=45.11  E-value=28  Score=16.79  Aligned_cols=52  Identities=31%  Similarity=0.447  Sum_probs=30.1

Q ss_pred             ECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHH
Q ss_conf             125776667500169984035698620443167531228999999970699999-9999999
Q gi|254780157|r   88 VPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKEL-TDRLNEW  148 (165)
Q Consensus        88 VP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i-~~kl~~~  148 (165)
                      -|+-.|...|+|.||.      |+|+.|+. |..-+-+-|  +.+..++.-.++ ++...+|
T Consensus       842 TplcnGhTTg~dvLw~------GvPmVTmp-ge~lAsrVa--~Sll~~~Gl~hliak~~eEY  894 (966)
T KOG4626         842 TPLCNGHTTGMDVLWA------GVPMVTMP-GETLASRVA--ASLLTALGLGHLIAKNREEY  894 (966)
T ss_pred             CCCCCCCCCCHHHHCC------CCCEEECC-CHHHHHHHH--HHHHHHCCCHHHHHHHHHHH
T ss_conf             7675886655233103------77426335-088898989--99999816288875128999


No 169
>PRK09135 pteridine reductase; Provisional
Probab=45.09  E-value=28  Score=16.79  Aligned_cols=32  Identities=28%  Similarity=0.284  Sum_probs=24.8

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf             9988749999588169899999999999809982
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDY   34 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~   34 (165)
                      |+.+-||++|.|+.+-  +...+++.|.+.|-..
T Consensus         2 M~~sgKvalVTGas~G--IG~aia~~la~~Ga~V   33 (249)
T PRK09135          2 MTDSSKVALITGGARR--IGAAIARTLHAAGYRV   33 (249)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEE
T ss_conf             7899988999688758--9999999999879989


No 170
>cd01139 TroA_f Periplasmic binding protein TroA_f.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=45.01  E-value=24  Score=17.19  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=13.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999840540
Q gi|254780157|r  138 DKELTDRLNEWRTQQTISISEYPKD  162 (165)
Q Consensus       138 d~~i~~kl~~~r~~~~~~v~~~~~~  162 (165)
                      .++-++++.+|.++....+.+.-++
T Consensus       147 ~e~rA~~l~~~~~~~~~~v~~r~~~  171 (342)
T cd01139         147 REERAEEFIEFYQERIDRIRDRLAK  171 (342)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8899999999999999999999742


No 171
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=44.46  E-value=28  Score=16.73  Aligned_cols=148  Identities=19%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE---HHCCHHHHHHHHHHHHHCCC---EEEEEEECC-CCCCHHHH
Q ss_conf             749999588169899999999999809982654530---10387999988987653598---299997267-66851134
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIIS---AHRTPDRLIEFAKNARFEGF---KLIIAGAGG-AAHLPGMI   77 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~S---AHR~p~~l~~~~~~~~~~~~---~viIa~AG~-aaaLpgvv   77 (165)
                      .|+.|+.-.+=.--+.++....|+..|+..+..++.   ..++.+.+.++.+.....+.   +.+|+.-|+ -+-|.|.+
T Consensus        34 ~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~  113 (360)
T COG0337          34 RKVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFA  113 (360)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf             74999977115787799999999855860579995798450559999999999997599988679997875877777899


Q ss_pred             HHHCC--CCEEEECCCC-----CCC---CCCC-----CHHHHHHCCCCCCCEEE---ECCCCCCHHHHHH-HHHHHHCCC
Q ss_conf             65224--2036612577-----666---7500-----16998403569862044---3167531228999-999970699
Q gi|254780157|r   78 AAMTS--LPVLGVPIIS-----QTL---GGID-----SLLSIVQMPAGVPVGTM---AIGQSGAINASLL-AVAILALDD  138 (165)
Q Consensus        78 a~~t~--~PVIgVP~~~-----~~~---~G~d-----allS~vqMP~Gvpvatv---~vg~~~~~NAal~-A~~Il~~~d  138 (165)
                      |+---  .+.|-+|+.-     ++.   .|++     .+.-+.-.|..|=+-|.   ..+ ..-+.+++. +.+.=.+.|
T Consensus       114 Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp-~re~~~G~AEvIK~g~I~D  192 (360)
T COG0337         114 AATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLP-PRELRAGMAEVIKYGLIAD  192 (360)
T ss_pred             HHHHHHCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEECHHHHCCCC-HHHHHHHHHHHHHHHHHCC
T ss_conf             999970897675563298776234564345378887622651569867998058864199-8899876999988764368


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780157|r  139 KELTDRLNEWRTQQT  153 (165)
Q Consensus       139 ~~i~~kl~~~r~~~~  153 (165)
                      +++.+.|.+..++..
T Consensus       193 ~~~f~~Le~~~~~l~  207 (360)
T COG0337         193 PEFFDWLEENLDALL  207 (360)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             899999998899987


No 172
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=43.89  E-value=29  Score=16.67  Aligned_cols=61  Identities=16%  Similarity=0.156  Sum_probs=38.9

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             7499995881698999999999998099826545301038799998898765359829999726766
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAA   71 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aa   71 (165)
                      -.++.++|. +|..+.++|.+.-+++|+...+.-+.. +.|.+..+-++    -+.+++..-.|...
T Consensus       251 ADivtVlG~-A~~sTI~~aikeA~k~G~~v~vDlInV-~dpv~ra~eLk----lg~DiI~lH~giD~  311 (392)
T PRK13307        251 ADAVVISGL-APISTIEKAIHEAQKTGIYSILDMLNV-EDPVKLLESLK----VKPDVVELHRGIDE  311 (392)
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHHHC----CCCCEEEEEECCCH
T ss_conf             988999567-987899999999997097999983478-88899999844----46988999854126


No 173
>PRK08251 short chain dehydrogenase; Provisional
Probab=43.74  E-value=29  Score=16.66  Aligned_cols=46  Identities=24%  Similarity=0.226  Sum_probs=24.6

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             8749999588169899999999999809982654530103879999889876
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |.|.++|.|+.|  -+..+.++.|.+-|-.  +  .-.-|..+++.+..++.
T Consensus         1 t~K~vlITGAss--GIG~alA~~la~~G~~--v--~l~~r~~~~l~~~~~el   46 (248)
T PRK08251          1 TRQKILITGASS--GLGAGMAREFAAKGRD--L--ALCARRTDRLEELKAEL   46 (248)
T ss_pred             CCCEEEEECCCC--HHHHHHHHHHHHCCCE--E--EEEECCHHHHHHHHHHH
T ss_conf             999899947863--9999999999987998--9--99989888999999999


No 174
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal  D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue.  A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=43.51  E-value=29  Score=16.63  Aligned_cols=102  Identities=15%  Similarity=0.210  Sum_probs=58.3

Q ss_pred             EEEEECCC--CCHHHHHHHHHHHHHCCCCEEEE--EEEH-----HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH
Q ss_conf             99995881--69899999999999809982654--5301-----038799998898765359829999726766851134
Q gi|254780157|r    7 VAIIMGSQ--SDWKIMKYAADMLDTLGIDYEAR--IISA-----HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI   77 (165)
Q Consensus         7 V~Ii~GS~--SD~~~~~~a~~~L~~~gI~~~~~--V~SA-----HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv   77 (165)
                      |+|+.=|.  ++....+.+.+.|+.+|.+..+.  +...     ...-+|..++.+-..+.++++++++-|+-++-  =+
T Consensus         1 I~ivaPS~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dl~~a~~dp~i~aI~~~rGG~ga~--rl   78 (282)
T cd07025           1 IGIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGAN--RL   78 (282)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHH--HH
T ss_conf             9799189999988999999999996899898787623446775799999999999985289998999927754399--99


Q ss_pred             HHHCCCCEEEEC--CCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             652242036612--5776667500169984035698
Q gi|254780157|r   78 AAMTSLPVLGVP--IISQTLGGIDSLLSIVQMPAGV  111 (165)
Q Consensus        78 a~~t~~PVIgVP--~~~~~~~G~dallS~vqMP~Gv  111 (165)
                      --+.++..|.=.  +.-|+ .-..+|+..++--.|+
T Consensus        79 L~~ld~~~i~~~pK~~iGy-SDiTaL~~al~~~~g~  113 (282)
T cd07025          79 LPYLDYDLIRANPKIFVGY-SDITALHLALYAKTGL  113 (282)
T ss_pred             HHHCCHHHHHHCCEEEEEC-CHHHHHHHHHHHHCCC
T ss_conf             8651543561088189960-2579999999982496


No 175
>TIGR00147 TIGR00147 conserved hypothetical protein TIGR00147; InterPro: IPR005218   Although the proteins in this group all contain the diacylglycerol kinase catalytic domain, their function is, as yet, unknown..
Probab=43.50  E-value=29  Score=16.63  Aligned_cols=83  Identities=18%  Similarity=0.294  Sum_probs=62.4

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC-----
Q ss_conf             995881698999999999998099826545301038799998898765359829999726766851134652242-----
Q gi|254780157|r    9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL-----   83 (165)
Q Consensus         9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~-----   83 (165)
                      +..|...+..+..++...|++-+.++.+++..--=..+..-.++++..+++.+-+| ++|+.+..--||.|+..+     
T Consensus        12 ~~~G~~~~~~~L~~v~~~L~~~~~e~~~~~T~~~Ghaed~A~~~~~~~~~~~~~vi-~~GGDGTi~ev~naL~~~d~~di   90 (316)
T TIGR00147        12 PTAGKKNIEKALKEVVKKLEKEGVEVRVKLTKKKGHAEDAARAVKEAAEYKVDTVI-ALGGDGTIHEVVNALKDLDDKDI   90 (316)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHCCCCC
T ss_conf             40012445677999999998577759998516788466899999998744666899-96189848999888875125778


Q ss_pred             CEEEECCCC
Q ss_conf             036612577
Q gi|254780157|r   84 PVLGVPIIS   92 (165)
Q Consensus        84 PVIgVP~~~   92 (165)
                      |-+|+=|.+
T Consensus        91 P~lg~~P~G   99 (316)
T TIGR00147        91 PALGILPVG   99 (316)
T ss_pred             CEEEEECCC
T ss_conf             824543576


No 176
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.42  E-value=30  Score=16.62  Aligned_cols=56  Identities=16%  Similarity=0.075  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCCC
Q ss_conf             6989999999999980998265453010387999988987653--59829999726766
Q gi|254780157|r   15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGAA   71 (165)
Q Consensus        15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~aa   71 (165)
                      ++.+.+++..+.++++|.+.... ..=-+.++.+.++.++..+  ..++++|.-||..-
T Consensus        36 ~~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~~~~~g~iDiLVnNAG~~~   93 (249)
T PRK06077         36 KRAEEMNETLRMVKEYGGEGIGV-LADVSTREGCRTLAKAALDNFGVVDILVNNAGLGL   93 (249)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             87689999999999759958999-84799999999999999998199888998577578


No 177
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=43.28  E-value=15  Score=18.44  Aligned_cols=72  Identities=22%  Similarity=0.288  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH----------------HH----------HHHCCCCEEEECCCCCCCCC
Q ss_conf             87999988987653598299997267668511----------------34----------65224203661257766675
Q gi|254780157|r   44 TPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG----------------MI----------AAMTSLPVLGVPIISQTLGG   97 (165)
Q Consensus        44 ~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpg----------------vv----------a~~t~~PVIgVP~~~~~~~G   97 (165)
                      -.+|+.+..+.-.  -.+.++++-|.=+..+-                ++          |-....|+|.+..++|. -.
T Consensus        97 Y~drl~~a~kkTg--~~dav~~g~G~I~g~~v~~~~~df~F~GGSmG~~~GEki~~a~e~A~~~~~PlI~~~~SGGa-RM  173 (288)
T PRK05654         97 YKDRLKAAQKKTG--LKDAVVTGKGTIEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERALEEKCPLVIFSASGGA-RM  173 (288)
T ss_pred             HHHHHHHHHHHCC--CCCEEEEEEEEECCEEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCH-HH
T ss_conf             7899999998709--75079998999999999999952145426645789999999999999749978999678763-33


Q ss_pred             CCCHHHHHHCCC-----------CCCCEEEEC
Q ss_conf             001699840356-----------986204431
Q gi|254780157|r   98 IDSLLSIVQMPA-----------GVPVGTMAI  118 (165)
Q Consensus        98 ~dallS~vqMP~-----------Gvpvatv~v  118 (165)
                      ..+++|..|||.           |+|--++..
T Consensus       174 QEGi~SLmQMaKts~A~~~l~~~~lpyI~vlt  205 (288)
T PRK05654        174 QEGLLSLMQMAKTSAALKRLSEAGLPYISVLT  205 (288)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             27467899889999999999976996899966


No 178
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=43.27  E-value=30  Score=16.61  Aligned_cols=68  Identities=18%  Similarity=0.258  Sum_probs=37.1

Q ss_pred             CCCCEEEEEECCCCCH----------------------HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--
Q ss_conf             9887499995881698----------------------9999999999980998265453010387999988987653--
Q gi|254780157|r    2 NIAPPVAIIMGSQSDW----------------------KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--   57 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~----------------------~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--   57 (165)
                      +++-||++|.|+.+-+                      +-.++..+.++..|.+..... .=-+.++.+.+++++..+  
T Consensus         9 ~L~gKvalVTG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~-~Dv~~~~~v~~~v~~~~~~~   87 (259)
T PRK08213          9 DLTGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWLA-ADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHHH
T ss_conf             99999899948776899999999998699999997988999999999995499589998-26899999999999999983


Q ss_pred             CCCEEEEEEECCC
Q ss_conf             5982999972676
Q gi|254780157|r   58 EGFKLIIAGAGGA   70 (165)
Q Consensus        58 ~~~~viIa~AG~a   70 (165)
                      ..++++|--||..
T Consensus        88 G~iDiLVNNAG~~  100 (259)
T PRK08213         88 GHIDILVNNAGAT  100 (259)
T ss_pred             CCCCEEEECCCCC
T ss_conf             9998999899778


No 179
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.16  E-value=30  Score=16.60  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=23.9

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf             9988749999588169899999999999809982
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDY   34 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~   34 (165)
                      |+++-|+++|.|+.+  -+...+++.|-+.|...
T Consensus         2 ~~L~gK~alVTGas~--GIG~aia~~la~~Ga~V   33 (254)
T PRK08642          2 MDISEQIVLVTGGSR--GLGAAIARAFAREGARV   33 (254)
T ss_pred             CCCCCCEEEEECHHH--HHHHHHHHHHHHCCCEE
T ss_conf             898989999978111--99999999999879999


No 180
>TIGR02456 treS_nterm trehalose synthase; InterPro: IPR012810    Trehalose synthase interconverts maltose and alpha,alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor .   More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process.
Probab=43.15  E-value=30  Score=16.60  Aligned_cols=50  Identities=32%  Similarity=0.547  Sum_probs=36.4

Q ss_pred             CHHHHHHHHHHHHHCCCC----------------EEE----EEEEHHCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             989999999999980998----------------265----45301038799998898765359829999
Q gi|254780157|r   16 DWKIMKYAADMLDTLGID----------------YEA----RIISAHRTPDRLIEFAKNARFEGFKLIIA   65 (165)
Q Consensus        16 D~~~~~~a~~~L~~~gI~----------------~~~----~V~SAHR~p~~l~~~~~~~~~~~~~viIa   65 (165)
                      |++=.-.=-.+|+++||+                |++    .|.=-|=|.+...+++.++..+|.+|||=
T Consensus        26 Df~GLt~KLDYL~~LGVD~LWLlPFf~SPLRDdGYDvsDY~~ilPe~GtldDF~~fv~~AH~Rg~RvI~d   95 (560)
T TIGR02456        26 DFPGLTSKLDYLKELGVDALWLLPFFKSPLRDDGYDVSDYRAILPEYGTLDDFKEFVDEAHARGMRVIID   95 (560)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             7234521104778623221131677788776788203423000677887789999999997579889996


No 181
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.03  E-value=30  Score=16.59  Aligned_cols=61  Identities=38%  Similarity=0.497  Sum_probs=43.9

Q ss_pred             CCCC-EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE-EEEEE
Q ss_conf             9887-49999588169899999999999809982654530103879999889876535982-99997
Q gi|254780157|r    2 NIAP-PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK-LIIAG   66 (165)
Q Consensus         2 ~~~p-kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~-viIa~   66 (165)
                      |++| .|-||.-+.||..+..++..-+. +|-+|.+.|.|..-|..  .++++.+ ..|.+ |+||-
T Consensus         3 ~k~pVDVRIiVEGAsDvE~iSkalQr~a-LG~eYnITisSIiPTT~--~eIA~ra-aeGADlvlIAT   65 (290)
T COG4026           3 NKTPVDVRIIVEGASDVEVISKALQRLA-LGSEYNITISSIIPTTN--VEIAKRA-AEGADLVLIAT   65 (290)
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHH-HCCCCEEEEEEECCCCH--HHHHHHH-HCCCCEEEEEE
T ss_conf             9986317998606533899999998864-05611058886226751--9999876-35687799960


No 182
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=42.93  E-value=30  Score=16.58  Aligned_cols=51  Identities=22%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEE---EEEHHCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             69899999999999809982654---53010387999988987653598299997
Q gi|254780157|r   15 SDWKIMKYAADMLDTLGIDYEAR---IISAHRTPDRLIEFAKNARFEGFKLIIAG   66 (165)
Q Consensus        15 SD~~~~~~a~~~L~~~gI~~~~~---V~SAHR~p~~l~~~~~~~~~~~~~viIa~   66 (165)
                      |-+-+-+++..+|++|||+|+..   +..+| .++....++..+.+.|.++|=+.
T Consensus        72 ~~iVv~~~a~~iLde~gi~y~~~~~g~~v~d-~~~~~s~L~~~a~~aGakifn~~  125 (257)
T PRK04176         72 NKIVVQEEADEILDEFGIRYKEVEDGLYVAD-SVEAAAKLAAGAIDAGAKIFNGV  125 (257)
T ss_pred             CHHHHCCHHHHHHHHCCCCCEECCCCEEEEC-HHHHHHHHHHHHHHCCCEEEECC
T ss_conf             3454005379999984997333589639950-89999999999974798898230


No 183
>PRK06720 hypothetical protein; Provisional
Probab=42.34  E-value=31  Score=16.52  Aligned_cols=55  Identities=22%  Similarity=0.203  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE
Q ss_conf             9988749999588169899999999999809982654530103879999889876535982
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK   61 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~   61 (165)
                      |+.+-||++|.|+.+-  +.+.++..|.+.|..    |+-.-|+.+.+.+..++....+.+
T Consensus        12 ~~L~gKvalITGa~~G--IG~a~A~~la~~Ga~----Vvi~d~~~~~~~~~~~~i~~~g~~   66 (169)
T PRK06720         12 MKLAGKVAIVTGGGIG--IGRNTALLLAKQGAK----VIVTDIDQESGQATVEEITNLGGE   66 (169)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCE----EEEECCCHHHHHHHHHHHHHCCCC
T ss_conf             8629999999897548--999999999986998----999527636599999999974995


No 184
>PRK12746 short chain dehydrogenase; Provisional
Probab=42.27  E-value=31  Score=16.51  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             9887499995881698999999999998099
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      +++-||++|.|+.+-  +...++..|-+.|.
T Consensus         3 ~l~gKvalITGga~G--IG~aia~~la~~Ga   31 (254)
T PRK12746          3 NLDGKVALVTGASRG--IGRAIAMRLANDGA   31 (254)
T ss_pred             CCCCCEEEEECCCCH--HHHHHHHHHHHCCC
T ss_conf             999988999484768--99999999998799


No 185
>pfam02006 DUF137 Protein of unknown function DUF137. This family of archaeal proteins has no known function.
Probab=41.98  E-value=31  Score=16.48  Aligned_cols=73  Identities=22%  Similarity=0.338  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCHHHH--------HHHCCCCEEEEC
Q ss_conf             999999999980998265453010387999988987653598299997-26766851134--------652242036612
Q gi|254780157|r   19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG-AGGAAHLPGMI--------AAMTSLPVLGVP   89 (165)
Q Consensus        19 ~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~-AG~aaaLpgvv--------a~~t~~PVIgVP   89 (165)
                      ..++..+.-+..+.+.|+.+  -|||++|+..+.+..+..|.+-+... .-.+.-+||.=        .|.-.--|+=||
T Consensus        19 a~~e~v~La~~~~a~iEVNl--FyRT~eR~~~I~~~L~~~g~~~vlG~~~d~~~~ipgL~~~R~~~~~~GI~~ADvVLVP   96 (178)
T pfam02006        19 VPEEIVELAEALGAKIEVNL--FYRTEERVEKIAEVLREHGAKEVLGVGPDASERIPGLDHERGKVSPDGIYSADVVLVP   96 (178)
T ss_pred             CHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEE
T ss_conf             84989999998099889994--3489899999999999759755544687645527898785340460454103379984


Q ss_pred             CCCC
Q ss_conf             5776
Q gi|254780157|r   90 IISQ   93 (165)
Q Consensus        90 ~~~~   93 (165)
                      ..-|
T Consensus        97 LEDG  100 (178)
T pfam02006        97 LEDG  100 (178)
T ss_pred             CCCC
T ss_conf             5778


No 186
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=41.82  E-value=31  Score=16.47  Aligned_cols=123  Identities=22%  Similarity=0.234  Sum_probs=68.6

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHH----HHHCCCCEE------------------------------EEEEEHHC----C
Q ss_conf             887499995881698999999999----998099826------------------------------54530103----8
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADM----LDTLGIDYE------------------------------ARIISAHR----T   44 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~----L~~~gI~~~------------------------------~~V~SAHR----~   44 (165)
                      |..|++|+..+ -|-|-|+-+..-    +..+|++.-                              ....|+.+    +
T Consensus         1 ~~kkIaIlTSG-GdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssr~~~~~~   79 (347)
T COG0205           1 MMKKIAILTSG-GDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT   79 (347)
T ss_pred             CCCEEEEECCC-CCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCEECCHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             98369998468-89830769999999999976978999943323420786121442014679865986875478887656


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHHHHHHCCCCEEEECCCCC-------CCCC-----------CCCHHHHH
Q ss_conf             799998898765359829999726-7668511346522420366125776-------6675-----------00169984
Q gi|254780157|r   45 PDRLIEFAKNARFEGFKLIIAGAG-GAAHLPGMIAAMTSLPVLGVPIISQ-------TLGG-----------IDSLLSIV  105 (165)
Q Consensus        45 p~~l~~~~~~~~~~~~~viIa~AG-~aaaLpgvva~~t~~PVIgVP~~~~-------~~~G-----------~dallS~v  105 (165)
                      ++.....+++++..+++.+|.+-| .|..=+-.++-+-.+||||+|-.-+       .--|           +|.|-.+.
T Consensus        80 ~e~~~~~~~~l~~~gId~LvvIGGDGS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dta  159 (347)
T COG0205          80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTA  159 (347)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             77999999999983998899978887389999999735986896688702788645267558889999999999999997


Q ss_pred             HCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             03569862044316753122899999
Q gi|254780157|r  106 QMPAGVPVGTMAIGQSGAINASLLAV  131 (165)
Q Consensus       106 qMP~Gvpvatv~vg~~~~~NAal~A~  131 (165)
                      ..++.+-+.-| .|.+    |+++|.
T Consensus       160 ssh~r~~iveV-MGR~----aG~lAl  180 (347)
T COG0205         160 SSHERIFIVEV-MGRH----AGWLAL  180 (347)
T ss_pred             HCCCCEEEEEE-CCCC----HHHHHH
T ss_conf             57687899996-2868----259999


No 187
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.55  E-value=32  Score=16.44  Aligned_cols=77  Identities=18%  Similarity=0.294  Sum_probs=53.8

Q ss_pred             CCCCCHHH--HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH--HHCCCCEEE
Q ss_conf             88169899--99999999980998265453010387999988987653598299997267668511346--522420366
Q gi|254780157|r   12 GSQSDWKI--MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA--AMTSLPVLG   87 (165)
Q Consensus        12 GS~SD~~~--~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva--~~t~~PVIg   87 (165)
                      |..+++-.  -+.+.+..+++|+++  .+..++-.+.+-.+.++++..+++++||...--..++...+.  .---.|||.
T Consensus         8 g~~~~f~~~~~~Gae~aA~e~Gv~v--~~~~a~~D~~~Q~~~Ie~~I~~gvD~Iiv~p~d~~a~~~~~~~A~~aGIpVV~   85 (272)
T cd06313           8 GLQATWCAQGKQAADEAGKLLGVDV--TWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVID   85 (272)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEE--EEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             8889789999999999999819989--99869999999999999999859999999688878999999999986998999


Q ss_pred             ECC
Q ss_conf             125
Q gi|254780157|r   88 VPI   90 (165)
Q Consensus        88 VP~   90 (165)
                      +-.
T Consensus        86 ~d~   88 (272)
T cd06313          86 MGT   88 (272)
T ss_pred             ECC
T ss_conf             747


No 188
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=41.14  E-value=32  Score=16.40  Aligned_cols=71  Identities=13%  Similarity=0.222  Sum_probs=40.5

Q ss_pred             CCCCCEEEEEECCCCC----------------------HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH-
Q ss_conf             9988749999588169----------------------89999999999980998265453010387999988987653-
Q gi|254780157|r    1 MNIAPPVAIIMGSQSD----------------------WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF-   57 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD----------------------~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~-   57 (165)
                      ++.+-||++|.|+.+.                      ..-.+++.+.++..|......+ .=...++.+.++.++..+ 
T Consensus         6 f~l~gK~alVTG~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~~~~~~~~~~~g~~~~~~~-~Dvt~~~~v~~~~~~~~~~   84 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAEAGATIVFNDIKQELVDKGLAAYRELGIEAHGYV-CDVTDEDGIQAMVAQIEKE   84 (265)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEE-ECCCCHHHHHHHHHHHHHH
T ss_conf             198999899958576899999999998699999995998999999999995499179999-3289999999999999998


Q ss_pred             -CCCEEEEEEECCCCC
Q ss_conf             -598299997267668
Q gi|254780157|r   58 -EGFKLIIAGAGGAAH   72 (165)
Q Consensus        58 -~~~~viIa~AG~aaa   72 (165)
                       ..++++|.-||....
T Consensus        85 ~g~iDiLVnNAG~~~~  100 (265)
T PRK07097         85 VGVIDILVNNAGIIRR  100 (265)
T ss_pred             CCCCCEEEECCCCCCC
T ss_conf             2999899989989999


No 189
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=40.91  E-value=32  Score=16.38  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHH
Q ss_conf             995881698999999999998099826545301038799998898
Q gi|254780157|r    9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAK   53 (165)
Q Consensus         9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~   53 (165)
                      |++=|.++=|..+++...|++.||+|+..-+..  .++...++.+
T Consensus         2 I~iYt~~~C~~C~~ak~~L~~~gi~y~~~di~~--d~~~~~~l~~   44 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDE--DPEALEELKK   44 (73)
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC--CHHHHHHHHH
T ss_conf             999918999779999999998399049998799--9999999998


No 190
>PRK13938 phosphoheptose isomerase; Provisional
Probab=40.85  E-value=23  Score=17.30  Aligned_cols=48  Identities=19%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             EEEEEEHHCCHHHHHHHHHH---HHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             65453010387999988987---6535982999972676685113465224
Q gi|254780157|r   35 EARIISAHRTPDRLIEFAKN---ARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus        35 ~~~V~SAHR~p~~l~~~~~~---~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      ..++.+..-.++.+.+..+.   .-.+|-++|+++-|+|++.+.-.++.-.
T Consensus        18 ~~~~~~~~~~~~~i~~~~~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~el~   68 (196)
T PRK13938         18 KTRILNDRVLLEAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELT   68 (196)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             999982522099999999999999987998999968688999999999986


No 191
>PRK10073 predicted glycosyl transferase; Provisional
Probab=40.66  E-value=33  Score=16.35  Aligned_cols=55  Identities=22%  Similarity=0.166  Sum_probs=40.3

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-CEEEEE---EEHHCCHHHHHHHHHHH
Q ss_conf             99887499995881698999999999998099-826545---30103879999889876
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGI-DYEARI---ISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI-~~~~~V---~SAHR~p~~l~~~~~~~   55 (165)
                      |+-+|+|.||+--..-....++|.+.+-.... ++|+-+   .|--.+++-+.+|.+..
T Consensus         2 m~~~P~vSiiiP~YN~e~yl~~cl~Si~~Qt~~~~EiIiVdDgStD~s~~i~~~~~~~~   60 (329)
T PRK10073          2 MNSTPKLSIIVPLYNAGKDFRACMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENY   60 (329)
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             99999789999288988999999999980899997999998999825899999998129


No 192
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=40.53  E-value=33  Score=16.34  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=23.9

Q ss_pred             CCCCCEEEEEECCCC--CHHHHHHHHHHHHHCCCC
Q ss_conf             998874999958816--989999999999980998
Q gi|254780157|r    1 MNIAPPVAIIMGSQS--DWKIMKYAADMLDTLGID   33 (165)
Q Consensus         1 m~~~pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~   33 (165)
                      ||.+|||.|+++|.-  -...++...+.|++.|.+
T Consensus         1 ~~~~kKVLILtas~G~GH~~AA~AL~e~l~~~~~~   35 (388)
T PRK13609          1 MIKNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIK   35 (388)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             99899799997888827899999999999835998


No 193
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.26  E-value=33  Score=16.31  Aligned_cols=31  Identities=16%  Similarity=0.146  Sum_probs=19.8

Q ss_pred             CCE-EEEEEECCCCCCHHHHHHHCCCCEEEEC
Q ss_conf             982-9999726766851134652242036612
Q gi|254780157|r   59 GFK-LIIAGAGGAAHLPGMIAAMTSLPVLGVP   89 (165)
Q Consensus        59 ~~~-viIa~AG~aaaLpgvva~~t~~PVIgVP   89 (165)
                      +.+ +|..+.|++.-|+-++...-...|+.+.
T Consensus        52 ~Adliv~~G~~lE~wl~k~~~~~~~~~~~~~~   83 (286)
T cd01019          52 EADLVVWIGPDLEAFLDKVLQGRKKGKVLTLA   83 (286)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             69999996997246899999747788837853


No 194
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=40.20  E-value=33  Score=16.31  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=18.5

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             9887499995881698999999999998099
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      +.+-|+++|.|+.+  -+...+++.|-+-|.
T Consensus         3 ~L~gK~alITGgs~--GIG~aia~~la~~G~   31 (253)
T PRK12826          3 DLMGRVALVTGAAR--GIGRAIAVRFAADGA   31 (253)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCC
T ss_conf             88998899948977--899999999998799


No 195
>PRK07074 short chain dehydrogenase; Provisional
Probab=40.17  E-value=33  Score=16.30  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=15.0

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             8749999588169899999999999809
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLG   31 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~g   31 (165)
                      |-||++|.|+.+  -+...+++.|-+.|
T Consensus         1 TnKvalITGgs~--GIG~aia~~la~~G   26 (256)
T PRK07074          1 TSRTALVTGAAG--GIGQALARRFLAAG   26 (256)
T ss_pred             CCCEEEEECCCC--HHHHHHHHHHHHCC
T ss_conf             998899988468--99999999999869


No 196
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=40.09  E-value=33  Score=16.30  Aligned_cols=44  Identities=20%  Similarity=0.197  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCHHHH--H-----HHCCCCEEEECCC
Q ss_conf             9998898765359829999726766851134--6-----5224203661257
Q gi|254780157|r   47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMI--A-----AMTSLPVLGVPII   91 (165)
Q Consensus        47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv--a-----~~t~~PVIgVP~~   91 (165)
                      .+....++.+..++++++++- +.+.+-++-  +     -....+|||+|=.
T Consensus       100 ~~~~~~e~L~~~gId~L~~IG-GDgS~~~A~~La~~~~~~~~~i~VVGIPKT  150 (403)
T PRK06555        100 PLRVAAERLASDGVDILHTIG-GDDTNTTAADLAAYLAANGYDLTVVGLPKT  150 (403)
T ss_pred             HHHHHHHHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             999999999982999999988-805999999999999973999528961455


No 197
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=39.92  E-value=33  Score=16.28  Aligned_cols=43  Identities=16%  Similarity=0.275  Sum_probs=37.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             1698999999999998099826545301038799998898765
Q gi|254780157|r   14 QSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus        14 ~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      +.|...+++|.++.+++||+..=..++--..|+.+.+++++..
T Consensus       112 DGD~~YL~~Cl~~Ykql~i~a~G~~i~E~eqP~~i~~Ll~~~~  154 (287)
T pfam05582       112 DGDPEYLDKCLKVYKQLGLPAVGVHISEKEQPEKIESLLEKYR  154 (287)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHHC
T ss_conf             4989999999999997198458998360125299999998728


No 198
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969    Synonym: dark protochlorophyllide reductase    Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=39.82  E-value=34  Score=16.27  Aligned_cols=42  Identities=29%  Similarity=0.283  Sum_probs=23.6

Q ss_pred             HHHHHHHHHH-HCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCC
Q ss_conf             9999999999-8099826545-3010387999988987653598
Q gi|254780157|r   19 IMKYAADMLD-TLGIDYEARI-ISAHRTPDRLIEFAKNARFEGF   60 (165)
Q Consensus        19 ~~~~a~~~L~-~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~   60 (165)
                      +...++.+|+ +||++|...+ ++...|.+.+.++....+..|.
T Consensus       225 ~G~~aA~YL~E~Fg~p~i~~~PiGv~~T~~f~~~i~~~l~~~G~  268 (562)
T TIGR01278       225 IGLMAAEYLKEKFGIPYITETPIGVNATRRFIREIAALLNQAGA  268 (562)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             89999999987458850121777668899999999999986488


No 199
>PRK07041 short chain dehydrogenase; Provisional
Probab=39.76  E-value=34  Score=16.26  Aligned_cols=49  Identities=27%  Similarity=0.361  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             9988749999588169899999999999809982654530103879999889876
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |+++-|+++|.|+.|.  +...+++.|-+-|-.    |+-..|+++++.+..++.
T Consensus         3 ~~l~gK~~lITGgs~G--IG~aia~~la~~Ga~----V~i~~r~~~~l~~~~~~~   51 (240)
T PRK07041          3 MSLNDQKVLVVGGSSG--IGLAAARAFAARGAD----VTIASRSRERLAAAARAL   51 (240)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHH
T ss_conf             8859998999577888--999999999987999----999959889999999984


No 200
>PRK06125 short chain dehydrogenase; Provisional
Probab=39.63  E-value=34  Score=16.25  Aligned_cols=64  Identities=19%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC-------------------------EEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             998874999958816989999999999980998-------------------------2654530103879999889876
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID-------------------------YEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~-------------------------~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |+++-|+++|.|+.+  -+...+++.|-+-|..                         .....+- ...++.+.++.+..
T Consensus         3 ~~l~gK~alITG~s~--GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D-~~~~~~~~~~~~~~   79 (259)
T PRK06125          3 LHLAGKRVLITGASK--GIGAAAAEAFAAEGCHLVLAARDADALAALAADLRAAHGVDVAVHALD-LSSPEAREQLAAEA   79 (259)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHH
T ss_conf             886999899968776--899999999998799899997988999999999987009866999888-99999999999985


Q ss_pred             HHCCCEEEEEEECC
Q ss_conf             53598299997267
Q gi|254780157|r   56 RFEGFKLIIAGAGG   69 (165)
Q Consensus        56 ~~~~~~viIa~AG~   69 (165)
                        .+++++|-.||.
T Consensus        80 --g~iDiLVnnAG~   91 (259)
T PRK06125         80 --GDIDILVNNAGA   91 (259)
T ss_pred             --CCCCEEEECCCC
T ss_conf             --899899976877


No 201
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=39.54  E-value=34  Score=16.24  Aligned_cols=59  Identities=20%  Similarity=0.294  Sum_probs=45.4

Q ss_pred             EEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             99995881698999---99999999809982654530103879999889876535982999972
Q gi|254780157|r    7 VAIIMGSQSDWKIM---KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA   67 (165)
Q Consensus         7 V~Ii~GS~SD~~~~---~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A   67 (165)
                      |++|.-+-+|--++   +.+...+.+.|  |.+-++..+..+++..++++.+..++++-+|...
T Consensus         2 IGvivp~l~n~ff~~~~~gi~~~~~~~g--y~~li~~s~~~~~~e~~~l~~l~~~~vdGiIl~~   63 (273)
T cd01541           2 IGVITTYISDYIFPSIIRGIESVLSEKG--YSLLLASTNNDPERERKCLENMLSQGIDGLIIEP   63 (273)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             8999588765799999999999999869--9899997899989999999999965999899925


No 202
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=38.91  E-value=35  Score=16.18  Aligned_cols=83  Identities=10%  Similarity=0.129  Sum_probs=52.0

Q ss_pred             CCEEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCHHHHHH
Q ss_conf             8749999588169---899999999999809982654530103879999889876535982999972-676685113465
Q gi|254780157|r    4 APPVAIIMGSQSD---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA-GGAAHLPGMIAA   79 (165)
Q Consensus         4 ~pkV~Ii~GS~SD---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A-G~aaaLpgvva~   79 (165)
                      +..|+++..+.++   ..+++.+...+.+.|  |.+.++..+..+++..++++....++++-+|... ......-..+..
T Consensus        59 s~~Igviv~~~~~~~~~~~~~~i~~~~~~~g--y~~~l~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~  136 (335)
T PRK10703         59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLSMLEE  136 (335)
T ss_pred             CCEEEEEECCCCCCEEHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             7459999547888650654336999999739--97999927898699999999999558877999768899799999997


Q ss_pred             HCCCCEEEE
Q ss_conf             224203661
Q gi|254780157|r   80 MTSLPVLGV   88 (165)
Q Consensus        80 ~t~~PVIgV   88 (165)
                      +...|++-+
T Consensus       137 ~~~iP~V~i  145 (335)
T PRK10703        137 YRHIPMVVM  145 (335)
T ss_pred             HCCCCEEEE
T ss_conf             089988999


No 203
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative  electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=38.91  E-value=35  Score=16.18  Aligned_cols=50  Identities=26%  Similarity=0.343  Sum_probs=28.7

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             8874999958816989999999999980998265453010387999988987653598299997
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG   66 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~   66 (165)
                      -+|.|.++.|+.-+. +     ..|+..||..-..|.|.        .+.+.++..|.+.||+-
T Consensus        81 ~kv~vv~~agG~P~~-~-----~~Lk~aGikvi~~V~Sv--------~lAk~~~~~GaDavIaE  130 (320)
T cd04743          81 IKPTFALIAGGRPDQ-A-----RALEAIGISTYLHVPSP--------GLLKQFLENGARKFIFE  130 (320)
T ss_pred             CCCCEEEECCCCCHH-H-----HHHHHCCCEEEEECCCH--------HHHHHHHHCCCCEEEEE
T ss_conf             699899956889078-7-----99998699799977999--------99999998499999995


No 204
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=38.84  E-value=35  Score=16.17  Aligned_cols=83  Identities=16%  Similarity=0.112  Sum_probs=45.7

Q ss_pred             CCCEEEEEECCCCCHHHHH-------------HHHHHHHHCCCCEE-EEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             8874999958816989999-------------99999998099826-545301038799998898765359829999726
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMK-------------YAADMLDTLGIDYE-ARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG   68 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~-------------~a~~~L~~~gI~~~-~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG   68 (165)
                      -+|+|+|+.-++-=.+..+             -....|+++|++.. ..++  --+++.+.+.+.++ .+.++++|+-.|
T Consensus       176 ~~prV~iisTGdELv~~g~~l~~gqI~dsN~~~l~a~l~~~G~~~~~~g~v--~Dd~~~i~~~l~~a-~~~~DlvIttGG  252 (411)
T PRK10680        176 RKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGII--RDDPHALRAAFIEA-DSQADVVISSGG  252 (411)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCEEEEECCC--CCCHHHHHHHHHHH-HHCCCEEEEECC
T ss_conf             077899992345556889889998187446999999999789889996873--78899999999976-512898998477


Q ss_pred             CCC----CCHHHHHHHCCCCEEEE
Q ss_conf             766----85113465224203661
Q gi|254780157|r   69 GAA----HLPGMIAAMTSLPVLGV   88 (165)
Q Consensus        69 ~aa----aLpgvva~~t~~PVIgV   88 (165)
                      -|.    +...++..+-..-+-+|
T Consensus       253 vS~G~~D~v~~~l~~~G~~~f~~V  276 (411)
T PRK10680        253 VSVGEADYTKTILEELGEIAFWKL  276 (411)
T ss_pred             CCCCCCHHHHHHHHHCCCCCCCEE
T ss_conf             658863249999997386420517


No 205
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions.  GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=38.37  E-value=35  Score=16.12  Aligned_cols=43  Identities=19%  Similarity=0.170  Sum_probs=30.8

Q ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHH
Q ss_conf             958816989999999999980998265453010387999988987
Q gi|254780157|r   10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKN   54 (165)
Q Consensus        10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~   54 (165)
                      ++=|++.=|+...|...|++.||+|+..-+.-  .|++..++.+.
T Consensus         4 ~IYsk~~CpyC~~AK~lL~~kgi~y~ei~l~~--~~~~~~~l~~~   46 (73)
T cd03027           4 TIYSRLGCEDCTAVRLFLREKGLPYVEINIDI--FPERKAELEER   46 (73)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHH
T ss_conf             99918999679999999998799649998889--98999999997


No 206
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors.  While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=38.20  E-value=35  Score=16.11  Aligned_cols=119  Identities=15%  Similarity=0.177  Sum_probs=72.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHH-----CCCCEEEEEEEHHCCHHHHH-HHHHHHHHCCCEEEEEEECCC----CCCHH
Q ss_conf             499995881698999999999998-----09982654530103879999-889876535982999972676----68511
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDT-----LGIDYEARIISAHRTPDRLI-EFAKNARFEGFKLIIAGAGGA----AHLPG   75 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~-----~gI~~~~~V~SAHR~p~~l~-~~~~~~~~~~~~viIa~AG~a----aaLpg   75 (165)
                      .|+.+..+.+..+..+.+..-+..     .++.++....+--++|..+. ..++.++.+....++..-|..    +|.-.
T Consensus         4 nig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~vc~~l~~~~v~~iv~~~~~~~~~~a~~ls   83 (362)
T cd06367           4 NIGVVLSGSSSEPAFRDAVTAANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDEEAVAQILD   83 (362)
T ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHH
T ss_conf             79999847733799999862014554466666236899972799899999999987448379999558997531446888


Q ss_pred             HHHHHCCCCEEEECC----C-CC-------------CCCCCCCHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf             346522420366125----7-76-------------6675001699840356986204431675312
Q gi|254780157|r   76 MIAAMTSLPVLGVPI----I-SQ-------------TLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI  124 (165)
Q Consensus        76 vva~~t~~PVIgVP~----~-~~-------------~~~G~dallS~vqMP~Gvpvatv~vg~~~~~  124 (165)
                      -+++.+..|||+.--    . +.             .....++++++++.=.=--|..+....+++.
T Consensus        84 ~~s~~~~vPvis~~~~~~~~~s~k~~~~~Flrt~psd~~Qa~ai~~il~~y~W~~v~~i~sdd~~g~  150 (362)
T cd06367          84 FTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYR  150 (362)
T ss_pred             HHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHH
T ss_conf             8741577888984558876456667675068727985999999999999879969999998475568


No 207
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and  PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=38.00  E-value=36  Score=16.09  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-------CCCCEEEECCC
Q ss_conf             38799998898765359829999726766851134652-------24203661257
Q gi|254780157|r   43 RTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-------TSLPVLGVPII   91 (165)
Q Consensus        43 R~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-------t~~PVIgVP~~   91 (165)
                      ++++...+..++.+..+++.+|.+-| .+.+-++-.-.       ...||||+|-.
T Consensus        76 ~~~~~~~~~~~~l~~~~Id~Li~IGG-dgS~~~a~~L~~~~~~~~~~i~vvgIPkT  130 (338)
T cd00363          76 RTEEGRAKAAENLKKHGIDALVVIGG-DGSYTGADLLTEEWPSKYQGFNVIGLPGT  130 (338)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             78677899999999829998999789-26999999999988852899518984103


No 208
>PRK06197 short chain dehydrogenase; Provisional
Probab=37.84  E-value=36  Score=16.07  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=23.1

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98874999958816989999999999980998
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGID   33 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~   33 (165)
                      +++=||+||.|++|  -+..+++..|.+.|-.
T Consensus        13 DL~GK~~lITGa~s--GIG~~~A~~La~~ga~   42 (306)
T PRK06197         13 DQSGRVAVVTGANT--GLGYETAAALAAKGAH   42 (306)
T ss_pred             CCCCCEEEECCCCC--HHHHHHHHHHHHCCCE
T ss_conf             98999999916895--9999999999978498


No 209
>KOG1205 consensus
Probab=37.74  E-value=36  Score=16.06  Aligned_cols=68  Identities=24%  Similarity=0.279  Sum_probs=43.3

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHH-HHHHHHH------------------------
Q ss_conf             998874999958816989999999999980998265453010387999-9889876------------------------
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRL-IEFAKNA------------------------   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l-~~~~~~~------------------------   55 (165)
                      ++++.||++|.|..|-  +.+.++..|-+.|..- +.++..-|.++++ ++..+..                        
T Consensus         8 e~~~~kvVvITGASsG--IG~~lA~~la~~G~~l-~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~   84 (282)
T KOG1205           8 ERLAGKVVLITGASSG--IGEALAYELAKRGAKL-VLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEW   84 (282)
T ss_pred             HHHCCCEEEEECCCCH--HHHHHHHHHHHCCCCE-EEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             8738988999578717--8899999998677734-774243202899999999747867647996765887889999999


Q ss_pred             ---HHCCCEEEEEEECCCC
Q ss_conf             ---5359829999726766
Q gi|254780157|r   56 ---RFEGFKLIIAGAGGAA   71 (165)
Q Consensus        56 ---~~~~~~viIa~AG~aa   71 (165)
                         +-.+.|+.|.=||++-
T Consensus        85 ~~~~fg~vDvLVNNAG~~~  103 (282)
T KOG1205          85 AIRHFGRVDVLVNNAGISL  103 (282)
T ss_pred             HHHHCCCCCEEEECCCCCC
T ss_conf             9986588888984686565


No 210
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.64  E-value=36  Score=16.05  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=44.5

Q ss_pred             CEEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHC-----CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH
Q ss_conf             7499995--88169899999999999809982654530103-----8799998898765359829999726766851134
Q gi|254780157|r    5 PPVAIIM--GSQSDWKIMKYAADMLDTLGIDYEARIISAHR-----TPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI   77 (165)
Q Consensus         5 pkV~Ii~--GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR-----~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv   77 (165)
                      .+|+|+.  ++..-...+++....|++.|+++-+.--.+..     .|..  .+ ++ ..+.++.+|+. |+.+.+-.+.
T Consensus         6 k~Vgiv~k~~~~~~~~~~~~l~~~L~~~g~~v~~e~~~a~~~~~~~~~~~--~~-~~-~~~~~Dlvi~l-GGDGTlL~~a   80 (291)
T PRK02155          6 RTVALVGRYQTPGIAEPLEALAACIAKRGFEVVFEADTARNTGLTGYPAL--TP-AE-IGARADVAVVL-GGDGTMLGIG   80 (291)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCC--CH-HH-HCCCCCEEEEE-CCCHHHHHHH
T ss_conf             89999914898689999999999999788999995557776399887747--97-99-46376789997-6788999999


Q ss_pred             H--HHCCCCEEEECC
Q ss_conf             6--522420366125
Q gi|254780157|r   78 A--AMTSLPVLGVPI   90 (165)
Q Consensus        78 a--~~t~~PVIgVP~   90 (165)
                      -  .....||+|+=.
T Consensus        81 ~~~~~~~~PilGiN~   95 (291)
T PRK02155         81 RQLAPYGTPLIGINH   95 (291)
T ss_pred             HHHHCCCCCEEEEEC
T ss_conf             987115996899854


No 211
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's  proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=37.38  E-value=37  Score=16.03  Aligned_cols=72  Identities=14%  Similarity=0.124  Sum_probs=43.9

Q ss_pred             CCCEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEH-HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
Q ss_conf             8874999958816--98999999999998099826545301-038799998898765359829999726766851
Q gi|254780157|r    3 IAPPVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISA-HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP   74 (165)
Q Consensus         3 ~~pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SA-HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp   74 (165)
                      .+.++.++.||.=  |...+++.++.|++-.|..++-..+- .-++++|..|++....++---+|.+.-+..-|+
T Consensus       106 ~~qRIv~FVgSPi~~~ek~l~~laKklKKnnV~vDII~FGe~~~n~~kL~~f~~~vn~~~~Shlv~ippg~~lLS  180 (187)
T cd01452         106 QKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPGENLLS  180 (187)
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf             544799997898755789999999987555853589994688899899999999845899825999479986456


No 212
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=37.29  E-value=37  Score=16.02  Aligned_cols=50  Identities=18%  Similarity=0.385  Sum_probs=23.9

Q ss_pred             EEEEECCCC----CHHHHHHH-HHHHHHCCCCEE-EEE--------------EEHHCCHHHHHHHHHHHH
Q ss_conf             999958816----98999999-999998099826-545--------------301038799998898765
Q gi|254780157|r    7 VAIIMGSQS----DWKIMKYA-ADMLDTLGIDYE-ARI--------------ISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         7 V~Ii~GS~S----D~~~~~~a-~~~L~~~gI~~~-~~V--------------~SAHR~p~~l~~~~~~~~   56 (165)
                      |-+|=||.|    ++..+++- ...++.|.|..+ +||              ...|.+...+.+-++...
T Consensus         6 vFllD~S~Svg~~nF~~~k~Fv~~lv~~f~I~~~~trVgvv~ys~~~~~~f~l~~~~~k~~l~~aI~~i~   75 (224)
T cd01475           6 VFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRME   75 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9999488998989999999999999985687998529999996582789996688678899999998636


No 213
>pfam06258 DUF1022 Protein of unknown function (DUF1022). This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=37.27  E-value=37  Score=16.02  Aligned_cols=102  Identities=23%  Similarity=0.307  Sum_probs=59.5

Q ss_pred             CCEEEEEECCCCC-----HH----HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
Q ss_conf             8749999588169-----89----99999999998099826545301038799998898765359829999726766851
Q gi|254780157|r    4 APPVAIIMGSQSD-----WK----IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP   74 (165)
Q Consensus         4 ~pkV~Ii~GS~SD-----~~----~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp   74 (165)
                      +|+|+++.|++|-     ..    +.++....++..|  ....|..=-|||+.+.+.+++.......+++--....+-..
T Consensus       143 ~p~i~vLIGG~sk~~~~~~~~~~~l~~~i~~l~~~~~--~~l~it~SRRTP~~~~~~l~~~~~~~~~~~~~~~~~~Npy~  220 (308)
T pfam06258       143 RPRVAVLVGGPSKHFRWDADAARRLLEQLQALLEAYG--GSLLITTSRRTPEAAEAALRKLLGPRPGLYVWDGTGPNPYF  220 (308)
T ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHH
T ss_conf             8769999655787888899999999999999998779--72999946889699999999860899728982798864589


Q ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH--CCCCCCCEEEECC
Q ss_conf             13465224203661257766675001699840--3569862044316
Q gi|254780157|r   75 GMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQ--MPAGVPVGTMAIG  119 (165)
Q Consensus        75 gvva~~t~~PVIgVP~~~~~~~G~dallS~vq--MP~Gvpvatv~vg  119 (165)
                      +.++.--.   |=|-.++-         ||+.  +-.|.||....+.
T Consensus       221 ~~L~~Ad~---iiVT~DSv---------SMisEA~~tGkPV~i~~l~  255 (308)
T pfam06258       221 GFLAWADA---VVVTADSV---------SMVSEAAATGAPVGVLPLE  255 (308)
T ss_pred             HHHHHCCE---EEEECCHH---------HHHHHHHHCCCCEEEEECC
T ss_conf             99985886---89906718---------8999998649977999677


No 214
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=37.09  E-value=37  Score=16.00  Aligned_cols=78  Identities=26%  Similarity=0.304  Sum_probs=45.0

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH-H--CCH----------HHHHHHHHHHHHCCCEEE-EEEECCCCCC
Q ss_conf             9995881698999999999998099826545301-0--387----------999988987653598299-9972676685
Q gi|254780157|r    8 AIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA-H--RTP----------DRLIEFAKNARFEGFKLI-IAGAGGAAHL   73 (165)
Q Consensus         8 ~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA-H--R~p----------~~l~~~~~~~~~~~~~vi-Ia~AG~aaaL   73 (165)
                      +++ +..|+..+.++..+.+.....+. +.+.+. +  |++          +.+.+.++..+..+++++ |++-. +..+
T Consensus         2 G~i-~p~~~~~~~~~~~~~~p~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d~iviaCnt-~~~~   78 (212)
T pfam01177         2 GLI-SPNSTLTVTRELVRALPAEVGPG-VYLHDTRIPPRTEEILDGAESPLERLLEAARRLAKAGADAIVIACNT-AHAL   78 (212)
T ss_pred             CEE-ECCHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCH-HHHH
T ss_conf             357-63528999999999655467982-99967999987667765454279999999999986799999991765-9999


Q ss_pred             HHHHHHHCCCCEEEE
Q ss_conf             113465224203661
Q gi|254780157|r   74 PGMIAAMTSLPVLGV   88 (165)
Q Consensus        74 pgvva~~t~~PVIgV   88 (165)
                      -+.+...+..||++.
T Consensus        79 ~~~~~~~~~ipvi~~   93 (212)
T pfam01177        79 AGELREATDIPVIGI   93 (212)
T ss_pred             HHHHHHHCCCCEEEH
T ss_conf             999998729989854


No 215
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=36.75  E-value=37  Score=15.96  Aligned_cols=82  Identities=22%  Similarity=0.211  Sum_probs=49.5

Q ss_pred             CEEEEEECCCC---CH------HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH
Q ss_conf             74999958816---98------9999999999980998265453010387999988987653598299997267668511
Q gi|254780157|r    5 PPVAIIMGSQS---DW------KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG   75 (165)
Q Consensus         5 pkV~Ii~GS~S---D~------~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpg   75 (165)
                      |||.++.||..   ..      ...++..+.|++.+++.... -..-.+++...+..+.+...+++.+|..-.-=+-=..
T Consensus         1 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~vdgli~~~~tf~~~~~   79 (452)
T cd00578           1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDK-PEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAKM   79 (452)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHH
T ss_conf             957999600445685799999999999999970699739988-8404899999999999877599799990586687799


Q ss_pred             HHH--HHCCCCEEE
Q ss_conf             346--522420366
Q gi|254780157|r   76 MIA--AMTSLPVLG   87 (165)
Q Consensus        76 vva--~~t~~PVIg   87 (165)
                      ++.  ....+||+=
T Consensus        80 ~~~~~~~~~~Pvl~   93 (452)
T cd00578          80 WIAGLSELRKPVLL   93 (452)
T ss_pred             HHHHHHHCCCCEEE
T ss_conf             99999857998999


No 216
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=36.68  E-value=37  Score=15.96  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=19.5

Q ss_pred             HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH
Q ss_conf             03879999889876535982999972676685113
Q gi|254780157|r   42 HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM   76 (165)
Q Consensus        42 HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv   76 (165)
                      .|.++--.+-.+++...+++.+|++-| .+.|-|.
T Consensus        80 F~~~egr~~a~~nL~~~gIdaLiVIGG-DGSltGA  113 (762)
T cd00764          80 FREREGRLQAAYNLIQRGITNLCVIGG-DGSLTGA  113 (762)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHH
T ss_conf             457768999999999809988999879-5378777


No 217
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=36.57  E-value=38  Score=15.94  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=48.5

Q ss_pred             EEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCC------CCCHHHHHHHCC---CCEEEECCCCC------CCCCCCC
Q ss_conf             54530103879999889876535982999972676------685113465224---20366125776------6675001
Q gi|254780157|r   36 ARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA------AHLPGMIAAMTS---LPVLGVPIISQ------TLGGIDS  100 (165)
Q Consensus        36 ~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~a------aaLpgvva~~t~---~PVIgVP~~~~------~~~G~da  100 (165)
                      .++.|-|-.-.++..+.+..  .+++.+|++-|+-      +--|.-|+....   +|||+.-=+.+      +..|+|+
T Consensus       263 a~l~~Gi~iV~~~~~le~~v--~daDLVITGEGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs~~~~~~~v~~~GI~A  340 (378)
T COG1929         263 AELKSGIEIVLEATNLEDAV--KDADLVITGEGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGSLGEDYEVVHQEGIDA  340 (378)
T ss_pred             CCCCCCHHHHHHHHCHHHHH--CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCHH
T ss_conf             75456379999874799761--6698899678765210137861169997516618988999233346853666648145


Q ss_pred             HHHHHHCCCCCCCE
Q ss_conf             69984035698620
Q gi|254780157|r  101 LLSIVQMPAGVPVG  114 (165)
Q Consensus       101 llS~vqMP~Gvpva  114 (165)
                      .+|++.++.....+
T Consensus       341 vFsi~~~~~~Le~a  354 (378)
T COG1929         341 VFSILERIGSLEEA  354 (378)
T ss_pred             HHHCCCCCCCHHHH
T ss_conf             66414677789999


No 218
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828    6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=36.50  E-value=38  Score=15.94  Aligned_cols=85  Identities=21%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHH----HCCCCEE------------------------------EEEEEHHCCHH-----
Q ss_conf             49999588169899999999999----8099826------------------------------54530103879-----
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLD----TLGIDYE------------------------------ARIISAHRTPD-----   46 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~----~~gI~~~------------------------------~~V~SAHR~p~-----   46 (165)
                      |++|+.-+ =|-|=|+-|....-    .+|++.-                              +..-|| |.|+     
T Consensus         1 kIgiLTSG-GDAPGMNaAIRavvr~A~~~g~EVyG~~~GY~GLi~g~i~~l~~~~V~~Ii~~GGT~L~tA-R~~EFK~~e   78 (302)
T TIGR02482         1 KIGILTSG-GDAPGMNAAIRAVVRTAIYQGIEVYGIRRGYKGLINGKIVPLKSKAVSGIISKGGTILGTA-RCPEFKTEE   78 (302)
T ss_pred             CEEEECCC-CCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEECCCCCCHHCCCCCCCCEEECC-CCCCCCCHH
T ss_conf             91675178-8870256899999999998197068987354213044134246644001001588333114-785456878


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC--CCEEEECCCCC
Q ss_conf             999889876535982999972676685113465224--20366125776
Q gi|254780157|r   47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS--LPVLGVPIISQ   93 (165)
Q Consensus        47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~--~PVIgVP~~~~   93 (165)
                      -=..=+++++..|++-.|++ |+.+.+.|.-.-+-.  .||||+|..-+
T Consensus        79 vR~kA~~nLK~~GI~~LVVi-GGDGSy~GA~~L~~~gg~~~iGlPGTID  126 (302)
T TIGR02482        79 VREKAVENLKKLGIEALVVI-GGDGSYTGAQKLYEEGGIPVIGLPGTID  126 (302)
T ss_pred             HHHHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             99999999887488668998-6844068899999717984787458502


No 219
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=36.48  E-value=38  Score=15.93  Aligned_cols=71  Identities=11%  Similarity=0.137  Sum_probs=42.5

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE-------------------------EEHHCCHHHHHHHHHHH
Q ss_conf             99887499995881698999999999998099826545-------------------------30103879999889876
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI-------------------------ISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V-------------------------~SAHR~p~~l~~~~~~~   55 (165)
                      |+++-|+++|.|..+..-+...+++.|.+.|-..-+..                         ..--+.++.+.++.+..
T Consensus         3 ~~L~GK~alVTGaag~~GiG~aia~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   82 (259)
T PRK07370          3 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCNVQDDAQIEEVFETI   82 (259)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             89999989997989985799999999998699999994787013589999999841286489991289999999999999


Q ss_pred             HH--CCCEEEEEEECCCC
Q ss_conf             53--59829999726766
Q gi|254780157|r   56 RF--EGFKLIIAGAGGAA   71 (165)
Q Consensus        56 ~~--~~~~viIa~AG~aa   71 (165)
                      .+  ..++++|-.||.++
T Consensus        83 ~~~~G~iDilVnna~~~~  100 (259)
T PRK07370         83 KQKWGQLDILVHCLAFAG  100 (259)
T ss_pred             HHHHCCCCEEEEEECCCC
T ss_conf             998589877986301146


No 220
>PRK10638 glutaredoxin 3; Provisional
Probab=36.36  E-value=38  Score=15.92  Aligned_cols=72  Identities=21%  Similarity=0.354  Sum_probs=44.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCE
Q ss_conf             49999588169899999999999809982654530103879999889876535982999972676685113465224203
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPV   85 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PV   85 (165)
                      +|.|.  |++.=|+..+|...|+..||+|+..-..  +.++.-.++.+.                       .+.++.|-
T Consensus         3 ~V~Iy--sk~~CpyC~~Ak~lL~~~gi~y~ei~v~--~~~~~~~~l~~~-----------------------tg~~TVPq   55 (83)
T PRK10638          3 NIEIY--TKATCPFCHRAKALLNSKGVSFQEIPID--GDAAKREEMIKR-----------------------SGRTTVPQ   55 (83)
T ss_pred             CEEEE--ECCCCHHHHHHHHHHHHCCCCCEEEECC--CCHHHHHHHHHH-----------------------CCCCCCCE
T ss_conf             88999--8999967999999999759987699867--999999999973-----------------------69996196


Q ss_pred             EEECCCCCCCCCCCCHHHHHH
Q ss_conf             661257766675001699840
Q gi|254780157|r   86 LGVPIISQTLGGIDSLLSIVQ  106 (165)
Q Consensus        86 IgVP~~~~~~~G~dallS~vq  106 (165)
                      |=  +.+...+|.|-|.+.-+
T Consensus        56 If--I~g~~IGG~~dl~~L~~   74 (83)
T PRK10638         56 IF--IDAQHIGGCDDLYALDA   74 (83)
T ss_pred             EE--ECCEEEECHHHHHHHHH
T ss_conf             99--99999957899999998


No 221
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family; InterPro: IPR014258   This entry represents a subgroup of the SCP-like extracellular domain which is found only in bacteria capable of endospore formation. Proteins in this entry include YkwD of Bacillus subtilis. This domain is generally found at the C-terminal region of these proteins, while the N-terminal region sometimes contains a domain homologous to the spore coat assembly protein SafA (IPR014248 from INTERPRO)..
Probab=36.29  E-value=19  Score=17.79  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=26.7

Q ss_pred             HHHHHHCCC-CEE-E---EEEEHHCCHHHHHHHHHHHH
Q ss_conf             999998099-826-5---45301038799998898765
Q gi|254780157|r   24 ADMLDTLGI-DYE-A---RIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus        24 ~~~L~~~gI-~~~-~---~V~SAHR~p~~l~~~~~~~~   56 (165)
                      .+.+++||| +|. +   .|++-|+||+++.+=+-+.+
T Consensus        58 F~Mmk~FGik~Y~W~AGENIA~G~~T~~~v~~awMNS~   95 (129)
T TIGR02909        58 FDMMKKFGIKSYRWAAGENIAAGNSTVEAVHQAWMNSP   95 (129)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf             68998646643102323543304877889985305872


No 222
>PRK07775 short chain dehydrogenase; Provisional
Probab=36.13  E-value=38  Score=15.90  Aligned_cols=47  Identities=23%  Similarity=0.196  Sum_probs=23.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             88749999588169899999999999809982654530103879999889876
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      ...|+++|.|..|  -+...++..|.+-|..    |+-..|..+++.+..++.
T Consensus         8 ~~~KtAlVTGAss--GIG~aiA~~la~~G~~----V~l~~R~~e~l~~~~~~l   54 (275)
T PRK07775          8 PARRPAIVAGASS--GIGAATAIELAAHGFP----VALGARRVEKCEEIVDKI   54 (275)
T ss_pred             CCCCEEEEECCCH--HHHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHH
T ss_conf             9999799946235--9999999999987998----999989899999999999


No 223
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.09  E-value=38  Score=15.90  Aligned_cols=53  Identities=11%  Similarity=0.105  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC
Q ss_conf             89999999999980998265453010387999988987653--5982999972676
Q gi|254780157|r   17 WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA   70 (165)
Q Consensus        17 ~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a   70 (165)
                      ..-.++..+.++.+|.++...-+ =-+.++.+.++.+...+  ..++++|..||..
T Consensus        39 ~~~~~~~~~~~~~~g~~~~~~~~-Dv~d~~~v~~~~~~~~~~~G~iDiLVnnAg~~   93 (250)
T PRK08063         39 RKAAEETANEIEQLGRKALVVKA-NVGDVEKIKEMFSQIDEHFGRLDVFVNNAASG   93 (250)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             89999999999954995899984-79999999999999999809988999878567


No 224
>PRK10116 universal stress protein UspC; Provisional
Probab=35.79  E-value=39  Score=15.87  Aligned_cols=70  Identities=21%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHC----CCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC-CCC--CCHH---HHHHHCCCCEEE
Q ss_conf             999999999980----9982654-5301038799998898765359829999726-766--8511---346522420366
Q gi|254780157|r   19 IMKYAADMLDTL----GIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAG-GAA--HLPG---MIAAMTSLPVLG   87 (165)
Q Consensus        19 ~~~~a~~~L~~~----gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG-~aa--aLpg---vva~~t~~PVIg   87 (165)
                      .-+++.+.|+++    ++|.+-. |.+. +..   .++.+.+++.+++.+|++.= ...  -|.+   -+--.++.||.-
T Consensus        61 ~~e~a~~~L~~l~~~~~~pi~~~~v~~G-~~~---~~I~~~a~e~~~DLIV~G~Hg~~~~~~l~Ssa~~vl~~s~~dVLi  136 (142)
T PRK10116         61 MQEETQSFLDELIQKADYPIEKTFIAYG-ELS---EHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLL  136 (142)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEEC-CHH---HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             9999999999999874998158999965-889---999999999699999990598548999988899996369998899


Q ss_pred             ECCCC
Q ss_conf             12577
Q gi|254780157|r   88 VPIIS   92 (165)
Q Consensus        88 VP~~~   92 (165)
                      ||..+
T Consensus       137 V~l~~  141 (142)
T PRK10116        137 VPLTG  141 (142)
T ss_pred             EECCC
T ss_conf             96588


No 225
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=35.75  E-value=39  Score=15.86  Aligned_cols=143  Identities=16%  Similarity=0.124  Sum_probs=90.8

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCE----EEEEEEHHC------CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH
Q ss_conf             999588169899999999999809982----654530103------8799998898765359829999726766851134
Q gi|254780157|r    8 AIIMGSQSDWKIMKYAADMLDTLGIDY----EARIISAHR------TPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI   77 (165)
Q Consensus         8 ~Ii~GS~SD~~~~~~a~~~L~~~gI~~----~~~V~SAHR------~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv   77 (165)
                      .++.++.......++....++.=++.+    -+-..+-|+      .++++.++.+.+.+++..+.+=+|=..+++..- 
T Consensus       102 ~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~val-  180 (342)
T COG2008         102 LPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVAL-  180 (342)
T ss_pred             ECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEECCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHC-
T ss_conf             3047987787399999976367776558875079861367786664899999999999980995440408898899873-


Q ss_pred             HHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCC---------------CHHHHHHHHHHHHCCCHHHH
Q ss_conf             652242036612577666750016998403569862044316753---------------12289999999706999999
Q gi|254780157|r   78 AAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSG---------------AINASLLAVAILALDDKELT  142 (165)
Q Consensus        78 a~~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~---------------~~NAal~A~~Il~~~d~~i~  142 (165)
                        ..       +. ...-.+.|++.=...=--|.|+..+.++...               -.-+.++|+|.+..-.+.+|
T Consensus       181 --g~-------~~-~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~  250 (342)
T COG2008         181 --GV-------AL-KTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVW  250 (342)
T ss_pred             --CC-------CH-HHHHHHCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf             --98-------88-998742889999131477521325897389999998999998656276654899999999731588


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999984054
Q gi|254780157|r  143 DRLNEWRTQQTISISEYPK  161 (165)
Q Consensus       143 ~kl~~~r~~~~~~v~~~~~  161 (165)
                      .....+...|...+.+.=+
T Consensus       251 ~~~~~Han~mA~~La~~~~  269 (342)
T COG2008         251 RLAADHANAMAARLAEGLE  269 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             8887888999999997653


No 226
>pfam03358 FMN_red NADPH-dependent FMN reductase.
Probab=35.54  E-value=39  Score=15.84  Aligned_cols=53  Identities=23%  Similarity=0.379  Sum_probs=34.1

Q ss_pred             CEEEEEECCCCC----HHHHHHHHHHHHHCCCCEEEEEEEH--------H---CCHHHHHHHHHHHHH
Q ss_conf             749999588169----8999999999998099826545301--------0---387999988987653
Q gi|254780157|r    5 PPVAIIMGSQSD----WKIMKYAADMLDTLGIDYEARIISA--------H---RTPDRLIEFAKNARF   57 (165)
Q Consensus         5 pkV~Ii~GS~SD----~~~~~~a~~~L~~~gI~~~~~V~SA--------H---R~p~~l~~~~~~~~~   57 (165)
                      .||.+|.||.+.    ...++...+.|++.|+++++.=..-        +   ..++.+.++.+..++
T Consensus         1 mkil~i~GS~r~~s~t~~l~~~~~~~l~~~g~e~~~idl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   68 (147)
T pfam03358         1 MKILVISGSPRKGSNTRKLAEWAAELLEEAGAEVELIDLADLPLPLCDEDLEAGDPDDVQELREKIAA   68 (147)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             97999976799887699999999999877699259963233467544664565898899999999995


No 227
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=35.51  E-value=39  Score=15.84  Aligned_cols=81  Identities=15%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH--HH
Q ss_conf             4999958816989---999999999980998265453010387999988987653598299997267668511346--52
Q gi|254780157|r    6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA--AM   80 (165)
Q Consensus         6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva--~~   80 (165)
                      |+++++-+.+.--   ..+.+.+..+++|++.  .+..+. ...+-...++++..++++.||...--+.+++.++.  ..
T Consensus         1 KIg~~~~tl~npff~~~~~g~~~~A~e~G~~l--~~~~~~-d~~~q~~~ie~~i~qgvd~iii~p~d~~~~~~~v~~A~~   77 (289)
T cd01540           1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFTV--VKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKA   77 (289)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCEE--EEECCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             98999589988399999999999999849879--997689-969999999999985898899927871001899999998


Q ss_pred             CCCCEEEEC
Q ss_conf             242036612
Q gi|254780157|r   81 TSLPVLGVP   89 (165)
Q Consensus        81 t~~PVIgVP   89 (165)
                      --.|||.+=
T Consensus        78 agIpVv~~D   86 (289)
T cd01540          78 YNMKVVAVD   86 (289)
T ss_pred             CCCEEEEEC
T ss_conf             798699934


No 228
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.49  E-value=39  Score=15.83  Aligned_cols=122  Identities=25%  Similarity=0.328  Sum_probs=62.2

Q ss_pred             CHHH--HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC---CHHHHH-------HHCCC
Q ss_conf             9899--99999999980998265453010387999988987653598299997267668---511346-------52242
Q gi|254780157|r   16 DWKI--MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH---LPGMIA-------AMTSL   83 (165)
Q Consensus        16 D~~~--~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa---Lpgvva-------~~t~~   83 (165)
                      |+|.  .++....+++.|+.. +..++..-+.+|+.++.+..  +|.-..++..|-.+.   ++.-+.       .+|..
T Consensus       121 DLP~eE~~~~~~~~~~~gi~~-I~lvaPtt~~~Ri~~i~~~s--~gfiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~  197 (256)
T PRK13111        121 DLPPEEAEEFRAAAKKHGIDL-IFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADVADLLARLKAHTDL  197 (256)
T ss_pred             CCCHHHHHHHHHHHHHCCCEE-EEEECCCCCHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             999788899999999759808-99969999889999999626--985999856776788766628899999999870689


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHH
Q ss_conf             0366125776667500169984035698620443167531228999999970699-9999999999999999998
Q gi|254780157|r   84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD-KELTDRLNEWRTQQTISIS  157 (165)
Q Consensus        84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d-~~i~~kl~~~r~~~~~~v~  157 (165)
                      ||     -.|  -|+..--..-++-.+.- +.+ ||.        .-++++..++ ++..+++.+|-+++++.+.
T Consensus       198 Pi-----~vG--FGIs~~e~v~~~~~~aD-GvI-VGS--------aiv~~i~~~~~~~~~~~v~~f~~~lk~~~~  255 (256)
T PRK13111        198 PV-----AVG--FGISTPEQAAAIAEGAD-GVI-VGS--------ALVKIIEAADPEEALAALAEFVKELKAALR  255 (256)
T ss_pred             CE-----EEE--CCCCCHHHHHHHHCCCC-EEE-ECH--------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             75-----885--28899999999974599-999-868--------999999843977789999999999999864


No 229
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.     The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported.   This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=35.43  E-value=39  Score=15.83  Aligned_cols=50  Identities=16%  Similarity=0.380  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE-EEEEE
Q ss_conf             169899999999999809982654530103879999889876535982-99997
Q gi|254780157|r   14 QSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK-LIIAG   66 (165)
Q Consensus        14 ~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~-viIa~   66 (165)
                      |-|...+++|.+.-+++|+|..=-+++=-..|+++..+++.+.   +| ++|++
T Consensus       120 DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~---PDIlViTG  170 (292)
T TIGR02855       120 DGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVR---PDILVITG  170 (292)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHC---CCEEEEEC
T ss_conf             2888899999998866197279999841218088999997309---97899946


No 230
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme.   Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=35.39  E-value=39  Score=15.82  Aligned_cols=48  Identities=21%  Similarity=0.247  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
Q ss_conf             999999999998099826545301038799998898765359829999726766851
Q gi|254780157|r   18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP   74 (165)
Q Consensus        18 ~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp   74 (165)
                      -+.+..+..|..-+    ..|...|+....+.++.++     .+++|+++|..+.+.
T Consensus        55 iVG~Pla~lL~~~~----atVt~chs~T~~l~~~~~~-----ADIvIsA~G~~~li~  102 (168)
T cd01080          55 IVGKPLAALLLNRN----ATVTVCHSKTKNLKEHTKQ-----ADIVIVAVGKPGLVK  102 (168)
T ss_pred             CCHHHHHHHHHHCC----CEEEEECCCCCCHHHHHHH-----CCEEEEECCCCCCCC
T ss_conf             00899999998489----9799976898897997410-----453554158766378


No 231
>pfam00239 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family (this family) contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase - see pfam02796.
Probab=34.80  E-value=40  Score=15.76  Aligned_cols=56  Identities=14%  Similarity=0.149  Sum_probs=27.3

Q ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             95881698999999999998099826545301038799998898765359829999
Q gi|254780157|r   10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIA   65 (165)
Q Consensus        10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa   65 (165)
                      ++|++.|-|-.++....++++.+=....+.-..|++..+..+.+.....|+.++..
T Consensus        38 ~Sg~~~~Rp~~~~ll~~~~~gd~ivv~~~dRl~R~~~~~~~~~~~l~~~gv~l~~~   93 (139)
T pfam00239        38 VSGKKLDRPGLQRLLADLREGDVLVVTKLDRLGRSLRDLLELLEELREKGVEVVSL   93 (139)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             36886788899999972769999999866330289999999999999789889991


No 232
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.79  E-value=40  Score=15.76  Aligned_cols=78  Identities=12%  Similarity=0.202  Sum_probs=48.1

Q ss_pred             EEEEECCCCCH--------HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH
Q ss_conf             99995881698--------9999999999980998265453010387999988987653598299997267668511346
Q gi|254780157|r    7 VAIIMGSQSDW--------KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA   78 (165)
Q Consensus         7 V~Ii~GS~SD~--------~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva   78 (165)
                      |++|+-+.+|.        .+.+.+...+.+.|  |.+-++..+...++..++.+....+.++-+|.......  ...+.
T Consensus         2 IGvivP~~~~~~i~Npff~~l~~gie~~~~~~G--y~lli~~~~~~~~~~~~~~~~l~~~~vDGiIi~~~~~~--~~~~~   77 (270)
T cd06294           2 IGVVLPPSADEAFQNPFFIEVLRGISAVANENG--YDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED--DPIID   77 (270)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHH
T ss_conf             899985786666569899999999999999859--98999918996999999999998279988999579898--49999


Q ss_pred             H--HCCCCEEEE
Q ss_conf             5--224203661
Q gi|254780157|r   79 A--MTSLPVLGV   88 (165)
Q Consensus        79 ~--~t~~PVIgV   88 (165)
                      .  ....|++-+
T Consensus        78 ~l~~~~iP~V~i   89 (270)
T cd06294          78 YLKEEKFPFVVI   89 (270)
T ss_pred             HHHHCCCCEEEE
T ss_conf             999769999998


No 233
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317   Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=34.76  E-value=17  Score=18.15  Aligned_cols=20  Identities=25%  Similarity=0.385  Sum_probs=16.5

Q ss_pred             HHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999706999999999999
Q gi|254780157|r  129 LAVAILALDDKELTDRLNEW  148 (165)
Q Consensus       129 ~A~~Il~~~d~~i~~kl~~~  148 (165)
                      -||+.|+|+|+++|.-|++|
T Consensus       330 ~AAe~LGLtYHQlRg~LkKy  349 (349)
T TIGR02974       330 KAAELLGLTYHQLRGLLKKY  349 (349)
T ss_pred             HHHHHHCCCHHHHHHHHCCC
T ss_conf             99987257368999863149


No 234
>PRK08219 short chain dehydrogenase; Provisional
Probab=34.71  E-value=40  Score=15.75  Aligned_cols=62  Identities=24%  Similarity=0.333  Sum_probs=36.7

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH--------------------HHCCCEE
Q ss_conf             88749999588169899999999999809982654530103879999889876--------------------5359829
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA--------------------RFEGFKL   62 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~--------------------~~~~~~v   62 (165)
                      |..||++|.|+.|  -+...+++.|.+-|     .+.-.+|..+++.++.++.                    +...+++
T Consensus         1 m~mKvalITGas~--GIG~aia~~la~~g-----~vv~~~r~~~~l~~l~~~~~~~~~~~Dlt~~~~i~~~~~~~~~iD~   73 (226)
T PRK08219          1 MGMPTALITGASR--GIGAAIARALARTH-----TLLLAGRPSERLDAVAARLGATTWPADLTDPEAIAAAVEPLDRLDV   73 (226)
T ss_pred             CCCCEEEEECCCH--HHHHHHHHHHHHCC-----CEEEEECCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCE
T ss_conf             9789999928464--99999999999699-----8999989889999999970993786057999999999996599889


Q ss_pred             EEEEECCCC
Q ss_conf             999726766
Q gi|254780157|r   63 IIAGAGGAA   71 (165)
Q Consensus        63 iIa~AG~aa   71 (165)
                      +|-.||...
T Consensus        74 lVnnAG~~~   82 (226)
T PRK08219         74 LVHNAGVAE   82 (226)
T ss_pred             EEECCCCCC
T ss_conf             998996899


No 235
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=34.41  E-value=41  Score=15.72  Aligned_cols=84  Identities=13%  Similarity=0.328  Sum_probs=61.7

Q ss_pred             CCEEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             87499995881698---999999999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r    4 APPVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      +..++++.-+-++-   .+.+.+.+.+++.|  |++.+++.+..+++-.++++.+..++++.+|...--+.++...+...
T Consensus        26 ~~TIgvivp~i~npff~~v~~gie~~a~~~G--y~l~v~~s~~d~~~q~~~i~~li~~~vdgiii~p~d~~~~~~~~~~a  103 (295)
T PRK10653         26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLG--YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA  103 (295)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             9979999489879799999999999999769--98999839999999999999999769988998477706569999999


Q ss_pred             --CCCCEEEEC
Q ss_conf             --242036612
Q gi|254780157|r   81 --TSLPVLGVP   89 (165)
Q Consensus        81 --t~~PVIgVP   89 (165)
                        ...|||-+-
T Consensus       104 ~~~gIPvV~~d  114 (295)
T PRK10653        104 NQANIPVITLD  114 (295)
T ss_pred             HHCCCEEEEEE
T ss_conf             97698199995


No 236
>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=34.10  E-value=23  Score=17.34  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=18.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999706999999999999
Q gi|254780157|r  129 LAVAILALDDKELTDRLNEW  148 (165)
Q Consensus       129 ~A~~Il~~~d~~i~~kl~~~  148 (165)
                      -|+++|+++-..++.|+++|
T Consensus        23 ~aA~~LGisr~tL~~kmkky   42 (42)
T pfam02954        23 KAARLLGISRRTLYRKLKKY   42 (42)
T ss_pred             HHHHHHCCCHHHHHHHHHHC
T ss_conf             99999796999999999739


No 237
>PRK06194 hypothetical protein; Provisional
Probab=34.09  E-value=41  Score=15.69  Aligned_cols=66  Identities=21%  Similarity=0.194  Sum_probs=33.4

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHHH
Q ss_conf             988749999588169899999999999809------------------------98265453010387999988987653
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNARF   57 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~~   57 (165)
                      +.+-||++|.|+.|-  +...++..|-+.|                        .+.....+ =-..++.+.++.+...+
T Consensus         3 ~l~gKvavITGassG--IG~a~A~~la~~Ga~Vvl~d~~~~~l~~~~~~l~~~g~~v~~~~~-DVsd~~~v~~l~~~~~~   79 (301)
T PRK06194          3 DFAGKVAVITGAASG--FGREFARIGARLGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT-DVSDAAQVEALADAALE   79 (301)
T ss_pred             CCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHHHHHH
T ss_conf             989998999273779--999999999987998999979889999999999845984999965-68999999999999999


Q ss_pred             --CCCEEEEEEECCC
Q ss_conf             --5982999972676
Q gi|254780157|r   58 --EGFKLIIAGAGGA   70 (165)
Q Consensus        58 --~~~~viIa~AG~a   70 (165)
                        ..++++|-.||..
T Consensus        80 ~fG~iDiLVNNAGi~   94 (301)
T PRK06194         80 RFGAVHLLFNNAGVG   94 (301)
T ss_pred             HHCCEEEEEECCCCC
T ss_conf             839937999557667


No 238
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=33.83  E-value=42  Score=15.66  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             9998898765359829999726766851134652242
Q gi|254780157|r   47 RLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL   83 (165)
Q Consensus        47 ~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~   83 (165)
                      +..+.+.+...++-++|+++.|++++++.-.+..-..
T Consensus        21 ~~~~~i~~~~~~g~kI~~~GNGgSa~~A~H~a~dl~~   57 (177)
T cd05006          21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVK   57 (177)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             9999999999879989999687408889999998735


No 239
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=33.70  E-value=42  Score=15.65  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=50.3

Q ss_pred             EEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCHHHHHHHCC
Q ss_conf             999958816989---9999999999809982654530103879999889876535982999972-676685113465224
Q gi|254780157|r    7 VAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA-GGAAHLPGMIAAMTS   82 (165)
Q Consensus         7 V~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A-G~aaaLpgvva~~t~   82 (165)
                      |+++.-+-++--   +.+.+...+++.|  |.+-++..+..+++-.++++.+..++++-+|... ......--.+ ....
T Consensus         2 IGvivp~i~npff~~~~~gie~~~~~~G--y~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIl~~~~~~~~~~~~l-~~~~   78 (259)
T cd01542           2 IGVIVPRLDSFSTSRTVKGILAALYENG--YQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTITDEHREAI-KKLN   78 (259)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHCC
T ss_conf             9999799868799999999999999869--989999789998999999999995699989993777775999999-9669


Q ss_pred             CCEEEE
Q ss_conf             203661
Q gi|254780157|r   83 LPVLGV   88 (165)
Q Consensus        83 ~PVIgV   88 (165)
                      .||+-+
T Consensus        79 iPvV~i   84 (259)
T cd01542          79 VPVVVV   84 (259)
T ss_pred             CCEEEE
T ss_conf             999995


No 240
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=33.49  E-value=42  Score=15.63  Aligned_cols=107  Identities=25%  Similarity=0.349  Sum_probs=55.8

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC---------------------CCE
Q ss_conf             88749999588169899999999999809982654530103879999889876535---------------------982
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE---------------------GFK   61 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~---------------------~~~   61 (165)
                      .+-+-+++.|++.  ++...++..|.+.|-  ++.+.|  |+.+++.+..+++..+                     +.+
T Consensus        26 l~g~~~~V~G~tG--~vG~~~A~~lA~~Ga--~v~lv~--R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l~~ad   99 (194)
T cd01078          26 LKGKTAVVLGGTG--PVGQRAAVLLAREGA--RVVLVG--RDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGAD   99 (194)
T ss_pred             CCCCEEEEECCCC--HHHHHHHHHHHHCCC--EEEEEE--CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             6798899985885--789999999998399--799995--8788899999999997098731135788778997746698


Q ss_pred             EEEEEECCCC-CCHHH-HHHHCCCC----EEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEC
Q ss_conf             9999726766-85113-46522420----3661257766675001699840356986204431
Q gi|254780157|r   62 LIIAGAGGAA-HLPGM-IAAMTSLP----VLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAI  118 (165)
Q Consensus        62 viIa~AG~aa-aLpgv-va~~t~~P----VIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~v  118 (165)
                      ++++. |-++ .+..- ......+-    |=+|||.+  ..|.|.-..-..++.+++.+-.++
T Consensus       100 iV~~a-~aAGv~~~~~~~~~~k~l~Vv~DVNAvPP~G--i~Gv~~~D~~~~i~G~~~~Gal~i  159 (194)
T cd01078         100 VVFAA-GAAGVELLEKLAWAPKPLAVAADVNAVPPVG--IEGIDVPDKGVDREGKVPYGAIGV  159 (194)
T ss_pred             EEEEC-CHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCCCCCEECCCCEEECCCCC
T ss_conf             99964-2777888788885088865998658999855--011033667345079725643112


No 241
>PRK08643 acetoin reductase; Validated
Probab=33.43  E-value=42  Score=15.62  Aligned_cols=62  Identities=18%  Similarity=0.141  Sum_probs=31.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCC------------------------CCEEEEEEEHHCCHHHHHHHHHHHHH--CC
Q ss_conf             49999588169899999999999809------------------------98265453010387999988987653--59
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLG------------------------IDYEARIISAHRTPDRLIEFAKNARF--EG   59 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~g------------------------I~~~~~V~SAHR~p~~l~~~~~~~~~--~~   59 (165)
                      ||++|.|+.+-+  ...+++.|.+.|                        -++.. +-.=-..++.+.++++...+  .+
T Consensus         3 KvalVTGg~~GI--G~aia~~la~~Ga~V~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~Dvt~~~~v~~~~~~~~~~~G~   79 (256)
T PRK08643          3 KVALVTGAGQGI--GFAIAKRLVEDGFKVAIVDYNEETAKAAADKLSSDGGKAIA-VKADVSNRDQVFDAVQQVVDTFGD   79 (256)
T ss_pred             CEEEEECCCCHH--HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE-EECCCCCHHHHHHHHHHHHHHHCC
T ss_conf             499995757889--99999999987999999969889999999999853990999-980589999999999999998299


Q ss_pred             CEEEEEEECCC
Q ss_conf             82999972676
Q gi|254780157|r   60 FKLIIAGAGGA   70 (165)
Q Consensus        60 ~~viIa~AG~a   70 (165)
                      ++++|-.||..
T Consensus        80 iDiLVNnAG~~   90 (256)
T PRK08643         80 LNVVVNNAGLA   90 (256)
T ss_pred             CCEEEECCCCC
T ss_conf             87999899889


No 242
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.19  E-value=43  Score=15.60  Aligned_cols=29  Identities=38%  Similarity=0.587  Sum_probs=23.5

Q ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             67531228999999970699999999999999
Q gi|254780157|r  119 GQSGAINASLLAVAILALDDKELTDRLNEWRT  150 (165)
Q Consensus       119 g~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~  150 (165)
                      |-+|++||-++|+-   ++++++|++|++|-.
T Consensus       590 GaSg~fNArvla~l---~N~peVRq~lke~GI  618 (880)
T COG3002         590 GASGGFNARVLAAL---CNDPEVRQALKEYGI  618 (880)
T ss_pred             CCCCCCCHHHHHHH---HCCHHHHHHHHHCCC
T ss_conf             74456159999999---489999988886186


No 243
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=33.18  E-value=43  Score=15.60  Aligned_cols=87  Identities=15%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             CEEEEEECCCCC--HHHHH-HHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC
Q ss_conf             749999588169--89999-999999980998265453010387999988987653598299997267668511346522
Q gi|254780157|r    5 PPVAIIMGSQSD--WKIMK-YAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT   81 (165)
Q Consensus         5 pkV~Ii~GS~SD--~~~~~-~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t   81 (165)
                      .++++++...+|  +..+. .+.+..+++|.........+...+..-.+.++++..++++.||....-+.++...+.-..
T Consensus        34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~a~~~~v~~a~  113 (322)
T COG1879          34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAK  113 (322)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             87999947788818999999999999864995589715788881999999999985599889992898075899999999


Q ss_pred             CC--CEEEECCC
Q ss_conf             42--03661257
Q gi|254780157|r   82 SL--PVLGVPII   91 (165)
Q Consensus        82 ~~--PVIgVP~~   91 (165)
                      .-  |||.+=..
T Consensus       114 ~aGIpVv~~d~~  125 (322)
T COG1879         114 AAGIPVVTVDSD  125 (322)
T ss_pred             HCCCEEEEECCC
T ss_conf             779849996167


No 244
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=33.06  E-value=43  Score=15.58  Aligned_cols=80  Identities=13%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             EEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH-HHHHCC
Q ss_conf             999958816989---9999999999809982654530103879999889876535982999972676685113-465224
Q gi|254780157|r    7 VAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM-IAAMTS   82 (165)
Q Consensus         7 V~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv-va~~t~   82 (165)
                      |+|+..+-+|--   +.+.+...+++.|  |.+-+...+-.+++-.++++.+..++++-+|...+....-+-. -.....
T Consensus         2 IGvivp~i~npf~~~~~~gie~~~~~~G--y~~~i~~t~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~l~~~~   79 (266)
T cd06282           2 VGVVLPSLANPVFAECVQGIQEEARAAG--YSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAER   79 (266)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999789868899999999999999879--98999979999799999999999659987999637877559999998559


Q ss_pred             CCEEEE
Q ss_conf             203661
Q gi|254780157|r   83 LPVLGV   88 (165)
Q Consensus        83 ~PVIgV   88 (165)
                      .||+-+
T Consensus        80 iPvV~~   85 (266)
T cd06282          80 VPYVLA   85 (266)
T ss_pred             CCEEEE
T ss_conf             978999


No 245
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132   This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=32.95  E-value=43  Score=15.57  Aligned_cols=51  Identities=14%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEEEHH--CCHHHHHH---HHHH
Q ss_conf             874999958816989999999999980998-265453010--38799998---8987
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGID-YEARIISAH--RTPDRLIE---FAKN   54 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~-~~~~V~SAH--R~p~~l~~---~~~~   54 (165)
                      .++|++-.=..=+-..++++-++|++.+|+ -..++.+.|  |.|+.+.+   +.+.
T Consensus         5 ~K~iAlTFDisWG~~~~~~IL~~L~~~~vk~ATFFlsG~Wae~hPelvk~lveI~~~   61 (198)
T TIGR02764         5 EKKIALTFDISWGNQYTEPILDTLKEEDVKNATFFLSGSWAERHPELVKELVEIVKD   61 (198)
T ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHC
T ss_conf             851788415898744300676667655885333024315761277899999999844


No 246
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=32.85  E-value=43  Score=15.56  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=44.7

Q ss_pred             CCEEEEEECCCCCHH--HHHHHHHHHHHCCCCE-EEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
Q ss_conf             874999958816989--9999999999809982-6545301038799998898765359829999726766851
Q gi|254780157|r    4 APPVAIIMGSQSDWK--IMKYAADMLDTLGIDY-EARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP   74 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~--~~~~a~~~L~~~gI~~-~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp   74 (165)
                      -+||.|+.|+.|=..  +.++....|+  |+.+ |..=.-+.-..+.+.+=++-+++++++.+.|+-|+|.--.
T Consensus        29 ~~kVLi~YGGGSIKrnGvydqV~~~Lk--g~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGGGSViD~  100 (384)
T COG1979          29 DAKVLIVYGGGSIKKNGVYDQVVEALK--GIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDG  100 (384)
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf             572999956862000251999999854--866999448778954899999999999739639999568420011


No 247
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain.  The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=32.84  E-value=43  Score=15.56  Aligned_cols=81  Identities=14%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             EEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH-HHHHC
Q ss_conf             49999588169---899999999999809982654530103879999889876535982999972676685113-46522
Q gi|254780157|r    6 PVAIIMGSQSD---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM-IAAMT   81 (165)
Q Consensus         6 kV~Ii~GS~SD---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv-va~~t   81 (165)
                      +|+++..+-+|   ..+.+.+.+.+++.|  |++.+......+++..++++.+..++++.+|...--.....-+ -.-..
T Consensus         1 tIgvi~p~~~~~f~~~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~~~~~~~~~~   78 (264)
T cd01537           1 TIGVLVPDLDNPFFAQVLKGIEEAAKAAG--YQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKA   78 (264)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf             98999788977999999999999999869--9899997999989999999999976999999967988868999999975


Q ss_pred             CCCEEEE
Q ss_conf             4203661
Q gi|254780157|r   82 SLPVLGV   88 (165)
Q Consensus        82 ~~PVIgV   88 (165)
                      ..||+-+
T Consensus        79 ~ipvV~~   85 (264)
T cd01537          79 GIPVVLV   85 (264)
T ss_pred             CCCEEEE
T ss_conf             9979998


No 248
>PRK06198 short chain dehydrogenase; Provisional
Probab=32.82  E-value=43  Score=15.56  Aligned_cols=54  Identities=15%  Similarity=0.183  Sum_probs=26.5

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE
Q ss_conf             88749999588169899999999999809982654530103879999889876535982
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK   61 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~   61 (165)
                      ++-||++|.|+.+.  +...+++.|-+.|...   |+-.+|+.+.+.+..++.+..+.+
T Consensus         4 L~gK~alVTGas~G--IG~aiA~~la~~Ga~v---v~~~~~~~~~~~~~~~~~~~~g~~   57 (268)
T PRK06198          4 LDGKIALVTGGTQG--LGAAIARLFAERGAAG---LVICGRSAEKGEAKAAELEALGAK   57 (268)
T ss_pred             CCCCEEEEECCCCH--HHHHHHHHHHHCCCCE---EEEECCCHHHHHHHHHHHHHCCCC
T ss_conf             89988999585778--9999999999879938---999629888999999999954996


No 249
>PRK06182 short chain dehydrogenase; Validated
Probab=32.69  E-value=43  Score=15.55  Aligned_cols=67  Identities=16%  Similarity=0.148  Sum_probs=39.4

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE-----------------EEEHHCCHHHHHHHHHHHHH--CCCEEE
Q ss_conf             88749999588169899999999999809982654-----------------53010387999988987653--598299
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR-----------------IISAHRTPDRLIEFAKNARF--EGFKLI   63 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~-----------------V~SAHR~p~~l~~~~~~~~~--~~~~vi   63 (165)
                      |+.||++|.|+.|  -+...+++.|.+-|...-..                 +..=-..++.+.+.++...+  ..++++
T Consensus         1 mk~Kv~lITGass--GIG~a~a~~la~~G~~V~~~~r~~~~l~~l~~~~~~~~~~Dvt~~~~v~~~~~~i~~~~g~iDiL   78 (273)
T PRK06182          1 MKKKVALVTGASS--GIGKATARKLIAEGFTVYGAARRVDKMEDLASLGIHPLALDVTDEASMKAAVATILAEEGRIDVL   78 (273)
T ss_pred             CCCCEEEEECCCH--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9469899906320--99999999999879989999798999999996799799985899999999999999983998877


Q ss_pred             EEEECCCC
Q ss_conf             99726766
Q gi|254780157|r   64 IAGAGGAA   71 (165)
Q Consensus        64 Ia~AG~aa   71 (165)
                      |--||...
T Consensus        79 VNNAG~~~   86 (273)
T PRK06182         79 VNNAGYGS   86 (273)
T ss_pred             EECCCCCC
T ss_conf             50586777


No 250
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=32.63  E-value=43  Score=15.54  Aligned_cols=71  Identities=21%  Similarity=0.322  Sum_probs=46.5

Q ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEC
Q ss_conf             95881698999999999998099826545301038799998898765359829999726766851134652242036612
Q gi|254780157|r   10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVP   89 (165)
Q Consensus        10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP   89 (165)
                      .+=|+++=|+..++...|++.||+|+..-.+-  .++...++.+..                      .+..+.|.|=  
T Consensus         3 ~iysk~~C~~C~~aK~lL~~~~i~y~ei~v~~--~~~~~~~~~~~~----------------------~~~~TvPqIf--   56 (75)
T cd03418           3 EIYTKPNCPYCVRAKALLDKKGVDYEEIDVDG--DPALREEMINRS----------------------GGRRTVPQIF--   56 (75)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHC----------------------CCCCEECEEE--
T ss_conf             99967999779999999998199868986279--999999999980----------------------8993539799--


Q ss_pred             CCCCCCCCCCCHHHHHH
Q ss_conf             57766675001699840
Q gi|254780157|r   90 IISQTLGGIDSLLSIVQ  106 (165)
Q Consensus        90 ~~~~~~~G~dallS~vq  106 (165)
                      +.+...+|.|-|..+-+
T Consensus        57 i~g~~IGG~~~l~~l~~   73 (75)
T cd03418          57 IGDVHIGGCDDLYALER   73 (75)
T ss_pred             ECCEEEECHHHHHHHHH
T ss_conf             99979837899999985


No 251
>PRK07856 short chain dehydrogenase; Provisional
Probab=32.52  E-value=44  Score=15.53  Aligned_cols=68  Identities=13%  Similarity=0.258  Sum_probs=47.6

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE--------------EEEHHCCHHHHHHHHHHHHH--CCCEEEE
Q ss_conf             9988749999588169899999999999809982654--------------53010387999988987653--5982999
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR--------------IISAHRTPDRLIEFAKNARF--EGFKLII   64 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~--------------V~SAHR~p~~l~~~~~~~~~--~~~~viI   64 (165)
                      |+++-||++|.|+.+  -+...+++.|-+-|-...+.              +..=-+.++.+.+..++..+  ..++++|
T Consensus         4 ~~l~~K~alITGgs~--GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   81 (254)
T PRK07856          4 LDLTGRVVLVTGGTR--GVGAGISEAFLAAGATVVVCGRRAPEVDGRPAEFHACDIRDPDQVAALVDAIAERHGRLDVLV   81 (254)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             235999899947676--899999999998799999997985574898439998469999999999999999809988899


Q ss_pred             EEECCC
Q ss_conf             972676
Q gi|254780157|r   65 AGAGGA   70 (165)
Q Consensus        65 a~AG~a   70 (165)
                      ..||..
T Consensus        82 nNAG~~   87 (254)
T PRK07856         82 NNAGGS   87 (254)
T ss_pred             ECCCCC
T ss_conf             889889


No 252
>PRK06196 oxidoreductase; Provisional
Probab=32.41  E-value=44  Score=15.52  Aligned_cols=64  Identities=22%  Similarity=0.337  Sum_probs=40.3

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHH-----------------------HHHHHHHHHH
Q ss_conf             99887499995881698999999999998099826545301038799-----------------------9988987653
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDR-----------------------LIEFAKNARF   57 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~-----------------------l~~~~~~~~~   57 (165)
                      .|++-||+||.|++|-  +..++++.|.+.|-.    |+-+-|++++                       +.+++++...
T Consensus        22 ~dL~GK~~vITGa~sG--IG~~tA~~La~~Ga~----Vil~~R~~~k~~~a~~~i~~~~~~~lDLs~~~sVr~~a~~~~~   95 (316)
T PRK06196         22 LDLSGKTAIVTGGYSG--LGLETTRALAQAGAH----VVVPARRPDAAREALAGIDGVEVVALDLADLASVRAFAERFLD   95 (316)
T ss_pred             CCCCCCEEEECCCCCH--HHHHHHHHHHHCCCE----EEEEECCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             7999998999179967--999999999978998----9999499999999998741785798368899999999999997


Q ss_pred             --CCCEEEEEEECCC
Q ss_conf             --5982999972676
Q gi|254780157|r   58 --EGFKLIIAGAGGA   70 (165)
Q Consensus        58 --~~~~viIa~AG~a   70 (165)
                        ..++++|.-||.-
T Consensus        96 ~~~~lDvLInNAGi~  110 (316)
T PRK06196         96 SGRRIDILINNAGVM  110 (316)
T ss_pred             HCCCCEEEEECCCCC
T ss_conf             579832999578767


No 253
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=32.29  E-value=40  Score=15.75  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHHH-HC-CCCCCCEEEECCCCCC-HHHHHHHHHH
Q ss_conf             598299997267668511346522420366125776667500-169984-03-5698620443167531-2289999999
Q gi|254780157|r   58 EGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGID-SLLSIV-QM-PAGVPVGTMAIGQSGA-INASLLAVAI  133 (165)
Q Consensus        58 ~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~d-allS~v-qM-P~Gvpvatv~vg~~~~-~NAal~A~~I  133 (165)
                      +.+++.+...|+-....+...-+++.        -++ .|+. =++-++ +| +..||+..++||++|- .-|+++|-..
T Consensus       137 d~v~i~~~~KGGGSEn~s~l~~l~P~--------~~~-e~ik~fVletv~~~G~~~CPP~~vgiGIGgt~~~A~~LaKka  207 (297)
T COG1951         137 DEVEILVAAKGGGSENKSALKMLTPS--------EGY-EGIKDFVLETVRTLGGNACPPYIVGIGIGGTAEKAALLAKKA  207 (297)
T ss_pred             CCEEEEEEECCCCCCCHHHHHEECCH--------HHH-HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf             80899998458874354456401822--------125-579999999998549989997068888577599999999999


Q ss_pred             HHCCC--HHHHHHHHHHHHHHH
Q ss_conf             70699--999999999999999
Q gi|254780157|r  134 LALDD--KELTDRLNEWRTQQT  153 (165)
Q Consensus       134 l~~~d--~~i~~kl~~~r~~~~  153 (165)
                      |....  .+.-++...++++.-
T Consensus       208 l~r~i~~~~~~~~~~~~eeelL  229 (297)
T COG1951         208 LLRPIDDRNPNEKNAKLEEELL  229 (297)
T ss_pred             HCCCCCCCCCCCCCHHHHHHHH
T ss_conf             6074555699842005799999


No 254
>PRK08339 short chain dehydrogenase; Provisional
Probab=32.21  E-value=44  Score=15.49  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=18.9

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             9988749999588169899999999999809
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLG   31 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~g   31 (165)
                      |+++-||++|.|+.+-  +...+++.|-+.|
T Consensus         4 l~L~gK~alITG~s~G--IG~aiA~~la~~G   32 (263)
T PRK08339          4 IDLSGKLAFTTASSKG--IGFGVARVLARAG   32 (263)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCC
T ss_conf             1789998999162609--9999999999869


No 255
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=32.20  E-value=44  Score=15.49  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHH
Q ss_conf             698999999999998099826545301038799998898
Q gi|254780157|r   15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAK   53 (165)
Q Consensus        15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~   53 (165)
                      .=+...++..++++.|+++.++-++|. |+|.++.+-+.
T Consensus       142 ~G~~li~e~~~i~~~h~~~t~vi~AS~-rhP~hvle~al  179 (216)
T TIGR00875       142 DGLKLIEEVKTIFENHALDTEVIAASV-RHPRHVLEAAL  179 (216)
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHH
T ss_conf             505789999999973087642665402-37178999997


No 256
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=32.15  E-value=44  Score=15.49  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=26.2

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH
Q ss_conf             995881698999999999998099826545301
Q gi|254780157|r    9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISA   41 (165)
Q Consensus         9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA   41 (165)
                      |++=|++.=|...+|...|++.||+|+..-.+-
T Consensus         3 V~Iysk~~CpyC~~AK~lL~~~gi~y~ei~l~~   35 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQENGISYEEIPLGK   35 (72)
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             999908999679999999998599659998887


No 257
>pfam00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain.
Probab=31.82  E-value=45  Score=15.45  Aligned_cols=62  Identities=18%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             CCCEEEEEE-CCCCCHH-HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH-CCCEEEE
Q ss_conf             887499995-8816989-999999999980998265453010387999988987653-5982999
Q gi|254780157|r    3 IAPPVAIIM-GSQSDWK-IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF-EGFKLII   64 (165)
Q Consensus         3 ~~pkV~Ii~-GS~SD~~-~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~-~~~~viI   64 (165)
                      .+|+.++|. |.+.+-. +.+...+..+++||.++..-....-+.+++.+.++.... ..++=|+
T Consensus        28 ~~P~Laii~vg~~~~s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~~l~~~I~~lN~D~~V~GIl   92 (117)
T pfam00763        28 VTPKLAVILVGDDPASQVYVRSKRKAAEELGIESELIRLPEDITEEELLALIEKLNADPSVHGIL   92 (117)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99718999848975679999999999997287169987776334999999999996788788798


No 258
>pfam05681 Fumerase Fumarate hydratase (Fumerase). This family consists of several bacterial fumarate hydratase proteins FumA and FumB. Fumarase, or fumarate hydratase (EC 4.2.1.2), is a component of the citric acid cycle. In facultative anaerobes such as Escherichia coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre.
Probab=31.79  E-value=45  Score=15.45  Aligned_cols=71  Identities=24%  Similarity=0.357  Sum_probs=39.8

Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH--CCCCCCCEEEECCCCCCH-HHHHHHHHHH
Q ss_conf             5982999972676685113465224203661257766675001699840--356986204431675312-2899999997
Q gi|254780157|r   58 EGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQ--MPAGVPVGTMAIGQSGAI-NASLLAVAIL  134 (165)
Q Consensus        58 ~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vq--MP~Gvpvatv~vg~~~~~-NAal~A~~Il  134 (165)
                      +.+++.+...|+-....+.+.-++        |+-+.-+=.+-++..+.  =+.+||+.+++||++|-+ -|+++|-+-|
T Consensus       127 d~~~i~~~~KGgGsEN~s~l~mL~--------P~~g~egi~~fVl~~V~~aG~~~CPP~ivGVGIGGt~~~a~~LaK~Al  198 (271)
T pfam05681       127 DELEITVAAKGGGSENKSKLAMLN--------PSDGIEGIKKFVLETVKEAGPNACPPGVVGVGIGGTSEKAALLAKKAL  198 (271)
T ss_pred             CEEEEEEECCCCCCCCHHHHEEEC--------CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             869999954778743542422426--------555667899999999997177899987168886786999999999981


Q ss_pred             HC
Q ss_conf             06
Q gi|254780157|r  135 AL  136 (165)
Q Consensus       135 ~~  136 (165)
                      -.
T Consensus       199 ~r  200 (271)
T pfam05681       199 LR  200 (271)
T ss_pred             HC
T ss_conf             25


No 259
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=31.74  E-value=45  Score=15.45  Aligned_cols=42  Identities=24%  Similarity=0.272  Sum_probs=28.6

Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC---------CCCEEEECCC
Q ss_conf             88987653598299997267668511346522---------4203661257
Q gi|254780157|r   50 EFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT---------SLPVLGVPII   91 (165)
Q Consensus        50 ~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t---------~~PVIgVP~~   91 (165)
                      +.+-..-.+|-++|+++.|+|++.+.-.++..         .+|+|..-.+
T Consensus        32 ~~i~~~l~~g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~lpai~L~~d   82 (196)
T PRK10886         32 MTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTD   82 (196)
T ss_pred             HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf             999999987997999868474889999999996465568988405663267


No 260
>PRK06139 short chain dehydrogenase; Provisional
Probab=31.56  E-value=45  Score=15.43  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=34.7

Q ss_pred             CCCEEEEEECCCC----------------------CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--C
Q ss_conf             8874999958816----------------------989999999999980998265453010387999988987653--5
Q gi|254780157|r    3 IAPPVAIIMGSQS----------------------DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--E   58 (165)
Q Consensus         3 ~~pkV~Ii~GS~S----------------------D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~   58 (165)
                      ++-||++|.|..|                      |.+-.++..+.++++|.+.....+- -..++.+.+..++.++  .
T Consensus         4 L~gKvvlITGASsGIG~aiA~~~A~~Ga~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~D-Vsd~~~v~~~~~~~~~~~G   82 (324)
T PRK06139          4 LHGAVVVITGASSGIGRATAEAFARRGARLVLAARDEEALFEVAEECRALGAEVLVVPTD-VTHADQVQALATQAASFLG   82 (324)
T ss_pred             CCCCEEEEECHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCC
T ss_conf             599779993825499999999999879989999899999999999999549948999766-7885789999999999749


Q ss_pred             CCEEEEEEECCC
Q ss_conf             982999972676
Q gi|254780157|r   59 GFKLIIAGAGGA   70 (165)
Q Consensus        59 ~~~viIa~AG~a   70 (165)
                      .++++|-.||..
T Consensus        83 ~IDiLVNNAGi~   94 (324)
T PRK06139         83 RIDVWFNNVGVG   94 (324)
T ss_pred             CCCEEEECCCCC
T ss_conf             987886457557


No 261
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=31.49  E-value=45  Score=15.42  Aligned_cols=58  Identities=17%  Similarity=0.252  Sum_probs=34.3

Q ss_pred             EEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC--CCEEEECCC
Q ss_conf             2654530103879999889876535982999972676685113465224--203661257
Q gi|254780157|r   34 YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS--LPVLGVPII   91 (165)
Q Consensus        34 ~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~--~PVIgVP~~   91 (165)
                      |.+.+.+|--....-..-++++..+|.+|+|-+|=-+..|..++..-+.  .|||+.-..
T Consensus        56 ~k~~~q~A~~~~~~Q~~qien~i~qg~~vlvi~a~d~~~l~~~i~~A~~~gikViaYDRl  115 (341)
T COG4213          56 AKVDVQSADGDEEKQLAQIENMINQGVKVLVIGAIDGGVLSNAVEKAKSEGIKVIAYDRL  115 (341)
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             323034322571679999999873599789998135325899999998759949974010


No 262
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=31.32  E-value=46  Score=15.40  Aligned_cols=63  Identities=14%  Similarity=0.208  Sum_probs=35.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEE-------------------------EEEEEHHCCHHHHHHHHHHHHHC--
Q ss_conf             499995881698999999999998099826-------------------------54530103879999889876535--
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYE-------------------------ARIISAHRTPDRLIEFAKNARFE--   58 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~-------------------------~~V~SAHR~p~~l~~~~~~~~~~--   58 (165)
                      ||++|.|+.+-  +...+++.|.+-|...-                         ..+..=-+.++.+.++.+...++  
T Consensus         3 KvalITG~s~G--IG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   80 (259)
T PRK12384          3 KVAVVIGGGQT--LGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             78999468868--9999999999879999999798899999999998624886089998327999999999999999829


Q ss_pred             CCEEEEEEECCC
Q ss_conf             982999972676
Q gi|254780157|r   59 GFKLIIAGAGGA   70 (165)
Q Consensus        59 ~~~viIa~AG~a   70 (165)
                      .++++|..||..
T Consensus        81 ~iDilVnnAG~~   92 (259)
T PRK12384         81 RVDLLVYSAGIA   92 (259)
T ss_pred             CCCEEEECCCCC
T ss_conf             971999899777


No 263
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=31.30  E-value=46  Score=15.40  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=50.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEE
Q ss_conf             99995881698999999999998099826545301038799998898765359829999726766851134652242036
Q gi|254780157|r    7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVL   86 (165)
Q Consensus         7 V~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVI   86 (165)
                      |.++..-+.=+|-..|+...++.+|+|+.+-+----|-.....+...+....                |..+-....-|+
T Consensus        83 ILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~----------------gl~~E~~gg~v~  146 (509)
T COG0532          83 ILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY----------------GLVPEEWGGDVI  146 (509)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC----------------CCCHHHCCCCEE
T ss_conf             9999756785661799999998779998999854327998878999988777----------------988766188149


Q ss_pred             EECCCCCCCCCCCCHHHHH
Q ss_conf             6125776667500169984
Q gi|254780157|r   87 GVPIISQTLGGIDSLLSIV  105 (165)
Q Consensus        87 gVP~~~~~~~G~dallS~v  105 (165)
                      =||++.....|+|-||.++
T Consensus       147 ~VpvSA~tg~Gi~eLL~~i  165 (509)
T COG0532         147 FVPVSAKTGEGIDELLELI  165 (509)
T ss_pred             EEEEECCCCCCHHHHHHHH
T ss_conf             9974324787979999999


No 264
>PRK13761 hypothetical protein; Provisional
Probab=31.03  E-value=46  Score=15.37  Aligned_cols=72  Identities=22%  Similarity=0.324  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH--------HHHCCCCEEEECC
Q ss_conf             99999999998099826545301038799998898765359829999726766851134--------6522420366125
Q gi|254780157|r   19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI--------AAMTSLPVLGVPI   90 (165)
Q Consensus        19 ~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv--------a~~t~~PVIgVP~   90 (165)
                      ..++..+.-+..+.+.|+.+  -|||++|+..+.+..+..|.+.+... .-.+-+||.=        .|.-.--||=||.
T Consensus        82 a~~e~v~La~~~~a~iEVNl--FyrT~eR~~~i~~~l~~~g~~~vLG~-~~d~~ipgL~~~R~~~~~~GI~~ADvVLVPL  158 (248)
T PRK13761         82 VPDEIVELAKALGAKIEVNL--FYRTEERVEKIAEVLREHGAKEVLGT-DEDKRIPGLDHERGKVSEDGIYSADVVLVPL  158 (248)
T ss_pred             CHHHHHHHHHHHCCCEEEEE--CCCCHHHHHHHHHHHHHCCCEEEECC-CCCCEECCCCCCHHHCCCCCCEECCEEEEEC
T ss_conf             66989999998099879995--24898999999999997699488668-9876108998841005704550023799844


Q ss_pred             CCC
Q ss_conf             776
Q gi|254780157|r   91 ISQ   93 (165)
Q Consensus        91 ~~~   93 (165)
                      .-|
T Consensus       159 EDG  161 (248)
T PRK13761        159 EDG  161 (248)
T ss_pred             CCC
T ss_conf             778


No 265
>PRK05866 short chain dehydrogenase; Provisional
Probab=30.34  E-value=47  Score=15.29  Aligned_cols=66  Identities=20%  Similarity=0.230  Sum_probs=33.9

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC------------------------CEEEEEEEHHCCHHHHHHHHHHHHH
Q ss_conf             9887499995881698999999999998099------------------------8265453010387999988987653
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI------------------------DYEARIISAHRTPDRLIEFAKNARF   57 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI------------------------~~~~~V~SAHR~p~~l~~~~~~~~~   57 (165)
                      +.+=||++|.|+.|  -+...++..|.+.|-                        +.....+ =-..++.+.++++...+
T Consensus        37 dL~GKvaLITGass--GIG~aiA~~la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~~~~~~~~-Dvtd~~~v~~~v~~~~~  113 (290)
T PRK05866         37 DLTGKRILLTGASS--GIGEAAAEKFARRGATVVAVARRKDLLDAVADRITAAGGDAMAIPC-DLSDLDAVDALVADVEE  113 (290)
T ss_pred             CCCCCEEEECCCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHHHHHH
T ss_conf             89999899908130--9999999999986998999989999999999999964990899977-88989999999999999


Q ss_pred             --CCCEEEEEEECCC
Q ss_conf             --5982999972676
Q gi|254780157|r   58 --EGFKLIIAGAGGA   70 (165)
Q Consensus        58 --~~~~viIa~AG~a   70 (165)
                        ..++++|--||..
T Consensus       114 ~~G~iDiLVNNAG~~  128 (290)
T PRK05866        114 RIGGVDILINNAGRS  128 (290)
T ss_pred             HHCCCCEEEECCCCC
T ss_conf             859988899757666


No 266
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria.  The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=30.32  E-value=47  Score=15.29  Aligned_cols=81  Identities=16%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEH---HCCHHHH-HHHHHHHHHCCCEEEEEE----ECCCCCCHHHHH
Q ss_conf             99995881698999999999998099826545301---0387999-988987653598299997----267668511346
Q gi|254780157|r    7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISA---HRTPDRL-IEFAKNARFEGFKLIIAG----AGGAAHLPGMIA   78 (165)
Q Consensus         7 V~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l-~~~~~~~~~~~~~viIa~----AG~aaaLpgvva   78 (165)
                      +++-||..+.....+++.    .+|.+--+++...   -..|... ..+.+..+..++++++++    .|.++.+|+.+|
T Consensus        56 tvlsvGp~~a~~~Lr~al----AmGaD~ai~i~d~~~~~~D~~~tA~~La~~i~~~~~DLIl~G~~s~D~~~g~v~~~lA  131 (202)
T cd01714          56 TVVSMGPPQAEEALREAL----AMGADRAILVSDRAFAGADTLATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLA  131 (202)
T ss_pred             EEEEECCHHHHHHHHHHH----HHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf             999937478899999999----7089835998065556669899999999999875998899954545799777999999


Q ss_pred             HHCCCCEEEECCC
Q ss_conf             5224203661257
Q gi|254780157|r   79 AMTSLPVLGVPII   91 (165)
Q Consensus        79 ~~t~~PVIgVP~~   91 (165)
                      .+-.+|.+.-=..
T Consensus       132 ~~Lg~P~vt~v~~  144 (202)
T cd01714         132 ELLGWPQITYVSK  144 (202)
T ss_pred             HHHCCCCCCEEEE
T ss_conf             9948972248889


No 267
>PRK05854 short chain dehydrogenase; Provisional
Probab=30.14  E-value=48  Score=15.27  Aligned_cols=45  Identities=18%  Similarity=0.174  Sum_probs=29.9

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHH
Q ss_conf             988749999588169899999999999809982654530103879999889
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFA   52 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~   52 (165)
                      +++-||+||.|++|  -+..+++..|.+-|-    +|+-+-|++++..+-+
T Consensus        11 dL~GK~~vITGa~s--GIG~~~a~~La~~Ga----~Vil~~R~~~k~~~a~   55 (314)
T PRK05854         11 DLSGKLAVVTGASS--GLGFGLARRLAAAGA----DVILPVRNRAKGEAAV   55 (314)
T ss_pred             CCCCCEEEECCCCC--HHHHHHHHHHHHCCC----EEEEEECCHHHHHHHH
T ss_conf             99999899906882--999999999997849----8999979999999999


No 268
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.08  E-value=48  Score=15.27  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=26.3

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf             9988749999588169899999999999809982
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDY   34 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~   34 (165)
                      |+++-|+++|.|..|-.-+...++..|.+.|-..
T Consensus         2 ~~L~gK~~lVTGaag~rGIG~aiA~~la~~Ga~V   35 (256)
T PRK08594          2 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKL   35 (256)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             8999988999899999639999999999879999


No 269
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some 
Probab=30.01  E-value=48  Score=15.26  Aligned_cols=56  Identities=14%  Similarity=0.106  Sum_probs=37.0

Q ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             95881698999999999998099826545301038799998898765359829999
Q gi|254780157|r   10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIA   65 (165)
Q Consensus        10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa   65 (165)
                      .+|+..|-|-.++....++++.+=+...+.-..|+...+..+.+....+|+.++..
T Consensus        35 ~sg~~~~Rp~~~~ll~~~~~gd~lvv~~ldRl~R~~~~~~~~~~~l~~~gv~l~~~   90 (126)
T cd03768          35 GSGGKKERPELQKLLEDLREGDTLVVTKLDRLGRSTKDLLEIVEELREKGVSLRSL   90 (126)
T ss_pred             EECCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             56167788335677552236988999877824788999999999999779879975


No 270
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=29.91  E-value=48  Score=15.25  Aligned_cols=36  Identities=25%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             887499995881698999999999998099826545
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI   38 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V   38 (165)
                      |+.||++|-|-----++++++.++|+.++.+++...
T Consensus         1 M~~kI~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~   36 (334)
T PRK08997          1 MKRTITVIPGDGIGPSIIDSTLKILDKLGCDFEYEF   36 (334)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             972599989784029999999999997098948999


No 271
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.85  E-value=48  Score=15.24  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=36.7

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-------------------------CEEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             9887499995881698999999999998099-------------------------826545301038799998898765
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI-------------------------DYEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI-------------------------~~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      +++-||++|.|+.+  -+...+++.|-+.|.                         ++....+ =...++.+.++++...
T Consensus         4 ~LkgK~~lITGas~--GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~~   80 (250)
T PRK12825          4 SLSGRVALVTGAAR--GIGRAIALRLAAAGADVIVHPPSDEAAAEETVAAVEALGRRAQAVQA-DVTDAAALEAAVEELV   80 (250)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-ECCCHHHHHHHHHHHH
T ss_conf             60978899938955--89999999999879989999798878999999999853994899994-1899999999999999


Q ss_pred             H--CCCEEEEEEECCCC
Q ss_conf             3--59829999726766
Q gi|254780157|r   57 F--EGFKLIIAGAGGAA   71 (165)
Q Consensus        57 ~--~~~~viIa~AG~aa   71 (165)
                      +  ..++++|..||...
T Consensus        81 ~~~g~iDilInnAg~~~   97 (250)
T PRK12825         81 ERFGAIDILVNNAGITG   97 (250)
T ss_pred             HHCCCCCEEEECCCCCC
T ss_conf             97699989998998899


No 272
>TIGR02663 nifX nitrogen fixation protein NifX; InterPro: IPR013480    NifX is involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-Co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. This complex catalyses the reduction of atmospheric dinitrogen to ammonia. The role of NifX in cofactor biosynthesis is not fully understood, though it appears to be associated with mature FeMo-Co and may be involved in the addition of heterometal and/or homocitrate .; GO: 0051540 metal cluster binding, 0009399 nitrogen fixation, 0051188 cofactor biosynthetic process.
Probab=29.67  E-value=49  Score=15.22  Aligned_cols=49  Identities=29%  Similarity=0.367  Sum_probs=37.5

Q ss_pred             CCCE-EEEEEECCCCCCHHHHHHHCCCCEEEECCCC-CCCCCCCCHHHHHH-CCCCCCC
Q ss_conf             5982-9999726766851134652242036612577-66675001699840-3569862
Q gi|254780157|r   58 EGFK-LIIAGAGGAAHLPGMIAAMTSLPVLGVPIIS-QTLGGIDSLLSIVQ-MPAGVPV  113 (165)
Q Consensus        58 ~~~~-viIa~AG~aaaLpgvva~~t~~PVIgVP~~~-~~~~G~dallS~vq-MP~Gvpv  113 (165)
                      ++|. +|+.+=|+.+| +=||++...      |+.. ....-+..++.-+| |..|+|+
T Consensus        67 k~C~ily~~AIGGpaA-AkvV~akiH------PiK~r~~pesI~~~l~~l~~mL~G~PP  118 (125)
T TIGR02663        67 KDCAILYCLAIGGPAA-AKVVAAKIH------PIKVRNEPESISEVLEKLQKMLKGNPP  118 (125)
T ss_pred             CCCEEEEEEEECCHHH-HHHHHCCCC------CCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             2770678872175357-898771888------301478872668899999987338867


No 273
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega 
Probab=29.65  E-value=49  Score=15.22  Aligned_cols=44  Identities=18%  Similarity=0.116  Sum_probs=32.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHH
Q ss_conf             999958816989999999999980998265453010387999988
Q gi|254780157|r    7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEF   51 (165)
Q Consensus         7 V~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~   51 (165)
                      ..=+.++ ..-|+.+++...|++-||+|+..-...++.|+.+.+.
T Consensus        18 ~mkLY~~-~~cPfa~rVri~L~eKgi~~e~v~v~l~~kpe~~l~~   61 (89)
T cd03055          18 IIRLYSM-RFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEK   61 (89)
T ss_pred             EEEEECC-CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf             4899726-9991999999999983998789995786588788975


No 274
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.53  E-value=49  Score=15.21  Aligned_cols=89  Identities=22%  Similarity=0.314  Sum_probs=47.7

Q ss_pred             CCCCCEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHH------HHHHHHHH--HHCCCEEEEEEECCC
Q ss_conf             998874999958816--98999999999998099826545301038799------99889876--535982999972676
Q gi|254780157|r    1 MNIAPPVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISAHRTPDR------LIEFAKNA--RFEGFKLIIAGAGGA   70 (165)
Q Consensus         1 m~~~pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~------l~~~~~~~--~~~~~~viIa~AG~a   70 (165)
                      |+.-.+|+|+.-..+  -...++++...|..-|+.+.+.--.++.....      ..+.....  ...+++++|+. |+.
T Consensus         1 m~~~R~V~IV~k~~~~~a~~~a~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l-GGD   79 (303)
T PRK03372          1 MTAERTVLLVAHTGRDEATESARRVVKQLGDAGIGVRVLAAEAADLPDDMRALGVEIEVVDADPDAADGCELVLVL-GGD   79 (303)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCC
T ss_conf             9988889999708998999999999999997889899970401002444555565422345322335785589997-787


Q ss_pred             CCCHHHH--HHHCCCCEEEECC
Q ss_conf             6851134--6522420366125
Q gi|254780157|r   71 AHLPGMI--AAMTSLPVLGVPI   90 (165)
Q Consensus        71 aaLpgvv--a~~t~~PVIgVP~   90 (165)
                      +.+-.+.  ......||+|+=.
T Consensus        80 GT~L~aar~~~~~~iPilGiN~  101 (303)
T PRK03372         80 GTFLRAAELARNADVPVLGVNL  101 (303)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEC
T ss_conf             8999999984447998898725


No 275
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183    Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) .   For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=29.35  E-value=49  Score=15.19  Aligned_cols=50  Identities=14%  Similarity=0.157  Sum_probs=33.5

Q ss_pred             HCCHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHH-----HHHHCCCCEEEECCC
Q ss_conf             038799998898765359829999726-76685113-----465224203661257
Q gi|254780157|r   42 HRTPDRLIEFAKNARFEGFKLIIAGAG-GAAHLPGM-----IAAMTSLPVLGVPII   91 (165)
Q Consensus        42 HR~p~~l~~~~~~~~~~~~~viIa~AG-~aaaLpgv-----va~~t~~PVIgVP~~   91 (165)
                      .+|++...+-.+++...+.+.+|-+-| -||-=+-.     +....+.+|||||--
T Consensus       151 I~T~Eq~~~al~~~k~l~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t~viGVPKT  206 (566)
T TIGR02477       151 IETEEQFAKALETAKKLKLDGLVIIGGDDSNTNAALLAEYFAKKGLKTQVIGVPKT  206 (566)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             56888999999998760896489974798679999999999973899227864025


No 276
>PRK06180 short chain dehydrogenase; Provisional
Probab=28.99  E-value=50  Score=15.15  Aligned_cols=65  Identities=14%  Similarity=0.064  Sum_probs=38.3

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE--------------------EEEHHCCHHHHHHHHHHHHH--CCCE
Q ss_conf             8749999588169899999999999809982654--------------------53010387999988987653--5982
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR--------------------IISAHRTPDRLIEFAKNARF--EGFK   61 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~--------------------V~SAHR~p~~l~~~~~~~~~--~~~~   61 (165)
                      ++||.+|.|+.|  -+...+++.|-+-|-..-..                    +..=-..++.+.+.++...+  ..++
T Consensus         3 ~~KvvlITGass--GIG~aiA~~l~~~G~~Vi~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iD   80 (277)
T PRK06180          3 SMKTWLITGVSS--GFGRALAQAALAAGHRVVGTVRSAAARRDFEALHPGRALARVLDVTDFDAIDGVVADAEATVGPID   80 (277)
T ss_pred             CCCEEEECCCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             998899917873--999999999998799999998999999999986799579999837999999999999999819986


Q ss_pred             EEEEEECCC
Q ss_conf             999972676
Q gi|254780157|r   62 LIIAGAGGA   70 (165)
Q Consensus        62 viIa~AG~a   70 (165)
                      ++|--||..
T Consensus        81 vLVNNAG~~   89 (277)
T PRK06180         81 VLVNNAGYG   89 (277)
T ss_pred             EEEECCCCC
T ss_conf             999899778


No 277
>PRK05993 short chain dehydrogenase; Provisional
Probab=28.93  E-value=50  Score=15.14  Aligned_cols=68  Identities=16%  Similarity=0.184  Sum_probs=38.9

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE-----------------EEHHCCHHHHHHHHHHHHH---CCC
Q ss_conf             99887499995881698999999999998099826545-----------------3010387999988987653---598
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI-----------------ISAHRTPDRLIEFAKNARF---EGF   60 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V-----------------~SAHR~p~~l~~~~~~~~~---~~~   60 (165)
                      |+|+ |+++|.|..|  -+....++.|.+-|...-...                 .---..++.+.+.++...+   ...
T Consensus         1 M~m~-K~vlITGass--GIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~~g~i   77 (277)
T PRK05993          1 MDMK-RSILITGCSS--GIGAYCAHALQKRGWRVFATCRKPEDIAALEAEGLEAFYLDYAEPESIAALVAQVLELSGGKL   77 (277)
T ss_pred             CCCC-CEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE
T ss_conf             9998-6899925686--999999999998799999997999999999848981999726677999999999999808970


Q ss_pred             EEEEEEECCCC
Q ss_conf             29999726766
Q gi|254780157|r   61 KLIIAGAGGAA   71 (165)
Q Consensus        61 ~viIa~AG~aa   71 (165)
                      +++|-.||...
T Consensus        78 d~lvNnAg~~~   88 (277)
T PRK05993         78 DALFNNGAYGQ   88 (277)
T ss_pred             EEEEECCCCCC
T ss_conf             69996664356


No 278
>PRK06179 short chain dehydrogenase; Provisional
Probab=28.54  E-value=51  Score=15.10  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=43.4

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE---------------EEEHHCCHHHHHHHHHHHHH--CCCEEE
Q ss_conf             9988749999588169899999999999809982654---------------53010387999988987653--598299
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR---------------IISAHRTPDRLIEFAKNARF--EGFKLI   63 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~---------------V~SAHR~p~~l~~~~~~~~~--~~~~vi   63 (165)
                      |+ +.||++|.|+.|  -+...+++.|.+-|...-..               +..=-..++.+.+.+++..+  ..++++
T Consensus         1 M~-~~KvalITGass--GIG~a~A~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~iDiL   77 (270)
T PRK06179          1 MS-NKKVALVTGASS--GIGRATAEALARAGYRVFGTSRNPARATPIPGVELLELDVTDDASVQAAVQEVIARAGRIDVL   77 (270)
T ss_pred             CC-CCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             98-995899907246--999999999998799999996897773054897899910799999999999999983998889


Q ss_pred             EEEECCC
Q ss_conf             9972676
Q gi|254780157|r   64 IAGAGGA   70 (165)
Q Consensus        64 Ia~AG~a   70 (165)
                      |.-||..
T Consensus        78 VNNAGi~   84 (270)
T PRK06179         78 VNNAGVG   84 (270)
T ss_pred             EECCCCC
T ss_conf             9898666


No 279
>pfam00106 adh_short short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
Probab=28.46  E-value=51  Score=15.09  Aligned_cols=65  Identities=12%  Similarity=0.087  Sum_probs=45.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCCC
Q ss_conf             4999958816989999999999980998265453010387999988987653--59829999726766
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGAA   71 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~aa   71 (165)
                      +|.++.+...+.+..++....++..|....... .--..++.+.+.+++...  ..++++|-.||...
T Consensus        26 ~~vv~~~r~~~~~~~~~~~~~~~~~g~~~~~~~-~Dv~~~~~v~~~~~~~~~~~g~iD~linnAG~~~   92 (167)
T pfam00106        26 RHLVLVSRRGDAPGAAELVAELEALGAEVTVAA-CDVADRDALAALLAALPAALGPLDGVVHNAGVLD   92 (167)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             489996599676899999999995598599998-4699999999999999997599739998871268


No 280
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which 
Probab=28.32  E-value=51  Score=15.07  Aligned_cols=69  Identities=23%  Similarity=0.333  Sum_probs=42.8

Q ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEC
Q ss_conf             95881698999999999998099826545301038799998898765359829999726766851134652242036612
Q gi|254780157|r   10 IMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVP   89 (165)
Q Consensus        10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP   89 (165)
                      ++=|++.=|...++...|+..||+|+..-.+.+.  +...++.+..                       +..+.|.|=+ 
T Consensus         3 ~iYs~~~C~~C~~ak~~L~~~~i~y~e~di~~~~--~~~~~l~~~~-----------------------g~~tvPqIfi-   56 (72)
T cd02066           3 VVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG--ELREELKELS-----------------------GWPTVPQIFI-   56 (72)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCH--HHHHHHHHHH-----------------------CCCCCCEEEE-
T ss_conf             9997799976999999999569977899805988--8999999984-----------------------9988995999-


Q ss_pred             CCCCCCCCCCCHHHHH
Q ss_conf             5776667500169984
Q gi|254780157|r   90 IISQTLGGIDSLLSIV  105 (165)
Q Consensus        90 ~~~~~~~G~dallS~v  105 (165)
                       .+...+|.|-|..+.
T Consensus        57 -~g~~IGG~~~l~~l~   71 (72)
T cd02066          57 -NGEFIGGYDDLKALH   71 (72)
T ss_pred             -CCEEECCHHHHHHHC
T ss_conf             -998981689999860


No 281
>PRK07062 short chain dehydrogenase; Provisional
Probab=28.15  E-value=52  Score=15.05  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=39.1

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE------------------------E-EEEHHCCHHHHHHHHHHH
Q ss_conf             998874999958816989999999999980998265------------------------4-530103879999889876
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA------------------------R-IISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~------------------------~-V~SAHR~p~~l~~~~~~~   55 (165)
                      |+++-||++|.|+.+  -+...+++.|-+.|....+                        . +..=-+.++.+.++++..
T Consensus         4 ~~L~gK~alITG~s~--GIG~a~a~~la~~Ga~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~   81 (265)
T PRK07062          4 IQLEGRVAVVTGGSS--GIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV   81 (265)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             788999899957577--999999999998799999997988999999999987369965999975799999999999999


Q ss_pred             HHC--CCEEEEEEECCC
Q ss_conf             535--982999972676
Q gi|254780157|r   56 RFE--GFKLIIAGAGGA   70 (165)
Q Consensus        56 ~~~--~~~viIa~AG~a   70 (165)
                      .++  +++++|-.||..
T Consensus        82 ~~~~G~iDiLVnNAg~~   98 (265)
T PRK07062         82 EARFGGVDMLVNNAGQG   98 (265)
T ss_pred             HHHHCCCCEEEECCCCC
T ss_conf             99839988899778888


No 282
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=28.10  E-value=52  Score=15.05  Aligned_cols=68  Identities=10%  Similarity=0.074  Sum_probs=44.0

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------E-EEEHHCCHHHHHHHHHHHHH--CCCEEE
Q ss_conf             998874999958816989999999999980998265--------------4-53010387999988987653--598299
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEA--------------R-IISAHRTPDRLIEFAKNARF--EGFKLI   63 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~--------------~-V~SAHR~p~~l~~~~~~~~~--~~~~vi   63 (165)
                      |+.+-|+++|.|+.|  -+...+++.|.+-|.....              . +..=-..++.+.+++++...  ..++++
T Consensus         4 ~~l~gK~alITG~s~--GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   81 (253)
T PRK08220          4 MDFSGKTVWVTGAAQ--GIGYAVALAFVEAGAKVIGFDQAFEQLNEQYPFATFVLDVADAAAVAQVCQRLLAETGPLDVL   81 (253)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             899999899958856--899999999998799999997887787489977999973799999999999999973998889


Q ss_pred             EEEECCC
Q ss_conf             9972676
Q gi|254780157|r   64 IAGAGGA   70 (165)
Q Consensus        64 Ia~AG~a   70 (165)
                      |-.||..
T Consensus        82 VnnAG~~   88 (253)
T PRK08220         82 VNVAGVL   88 (253)
T ss_pred             EECCCCC
T ss_conf             9899878


No 283
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=27.74  E-value=52  Score=15.01  Aligned_cols=47  Identities=26%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE---EEEHHCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             899999999999809982654---530103879999889876535982999
Q gi|254780157|r   17 WKIMKYAADMLDTLGIDYEAR---IISAHRTPDRLIEFAKNARFEGFKLII   64 (165)
Q Consensus        17 ~~~~~~a~~~L~~~gI~~~~~---V~SAHR~p~~l~~~~~~~~~~~~~viI   64 (165)
                      +-+.+++..+|++|||+|+..   +.-+| .++...+.+..+-+-+.++|-
T Consensus        79 iVv~~~a~~iL~e~gI~ye~~e~g~~v~d-s~e~~skl~~~a~~aGaki~n  128 (262)
T COG1635          79 IVVREEADEILDEFGIRYEEEEDGYYVAD-SAEFASKLAARALDAGAKIFN  128 (262)
T ss_pred             EEECCHHHHHHHHHCCCCEECCCCEEEEC-HHHHHHHHHHHHHHCCCEEEE
T ss_conf             44425389999981985244579669832-799999999998730810242


No 284
>TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils .    Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively.   This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II .   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=27.72  E-value=36  Score=16.07  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=25.1

Q ss_pred             EEEEEEEHH-CCHHHH--HHHHHHHHHCCCEEEEEE
Q ss_conf             265453010-387999--988987653598299997
Q gi|254780157|r   34 YEARIISAH-RTPDRL--IEFAKNARFEGFKLIIAG   66 (165)
Q Consensus        34 ~~~~V~SAH-R~p~~l--~~~~~~~~~~~~~viIa~   66 (165)
                      .|-.|-++| ||+-..  ++|+....++|+ ||||-
T Consensus       512 TDADVDGSHIRTLLLTFFYR~M~~LIE~Gy-vYIAq  546 (818)
T TIGR01059       512 TDADVDGSHIRTLLLTFFYRYMRPLIENGY-VYIAQ  546 (818)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-EEEEC
T ss_conf             067878368999999988740158874587-26507


No 285
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS).  In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=27.69  E-value=53  Score=15.00  Aligned_cols=68  Identities=15%  Similarity=0.200  Sum_probs=43.0

Q ss_pred             CEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             74999958816--9899999999999809982654530103879999889876535982999972676685113465224
Q gi|254780157|r    5 PPVAIIMGSQS--DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus         5 pkV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      .|+.+.+||--  -.-++++..+.|++.||++++.-++..       ++...  .++++++|..+-...        ...
T Consensus         1 KkIlVaCGsGiaTSt~v~~ki~~~l~e~gi~~~i~~~~i~-------e~~~~--~~~~Dliv~tt~~~~--------~~~   63 (89)
T cd05566           1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIA-------EVPSL--LDDADLIVSTTKVPE--------DYG   63 (89)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHH-------HHHHC--CCCCCEEEEECCCCC--------CCC
T ss_conf             9499998997039999999999999986991599997599-------98742--799878999442688--------889


Q ss_pred             CCEEEEC
Q ss_conf             2036612
Q gi|254780157|r   83 LPVLGVP   89 (165)
Q Consensus        83 ~PVIgVP   89 (165)
                      .|||..-
T Consensus        64 iPvi~g~   70 (89)
T cd05566          64 IPVINGL   70 (89)
T ss_pred             CCEEEEE
T ss_conf             8789963


No 286
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA.  ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP).  ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains.  A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=27.69  E-value=53  Score=15.00  Aligned_cols=107  Identities=19%  Similarity=0.294  Sum_probs=71.4

Q ss_pred             HHHHHCCCCEE-------EEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             99998099826-------54530103879999889876535982999972676685113465224203661257766675
Q gi|254780157|r   25 DMLDTLGIDYE-------ARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGG   97 (165)
Q Consensus        25 ~~L~~~gI~~~-------~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G   97 (165)
                      .+++++||+..       --|.++-.+++...+++++++.++.-+|.++-        ++.-+..         .+.--|
T Consensus       113 ~iiR~lGV~lVdG~iPG~AvIvG~apd~e~a~~iv~elQ~k~il~fl~g~--------iieQl~e---------~gvk~G  175 (287)
T cd01917         113 PIVRGLGIKMVDWTIPGEAVILGRAKDSKALKKIVDDLMGRGFMLFLCDE--------IVEQLLE---------ENVKLG  175 (287)
T ss_pred             HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEHHH--------HHHHHHH---------HCHHCC
T ss_conf             88997498520587771468851799848999999999866844522433--------9999998---------170027


Q ss_pred             CCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             001699840356986204431675312289999999706999999999999999999998
Q gi|254780157|r   98 IDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQTISIS  157 (165)
Q Consensus        98 ~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~~~~v~  157 (165)
                      +|-.+    .|-| -+ |-+|   -+.|-|+-|+-|++---|--++++.+|..+.....-
T Consensus       176 ~d~rl----vP~G-~i-Ts~i---ha~~~A~Raal~FGgv~PGd~~~~l~Y~~~Rv~AFV  226 (287)
T cd01917         176 LDYIA----YPLG-NF-TQAI---HAANYALRAGLMFGGIEPGKREEIRDYQRRRVRAFV  226 (287)
T ss_pred             CCEEE----EECC-CC-EEEH---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             72589----7247-61-1102---465799998888569896656899999997778898


No 287
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.66  E-value=53  Score=15.00  Aligned_cols=54  Identities=13%  Similarity=0.118  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC
Q ss_conf             989999999999980998265453010387999988987653--5982999972676
Q gi|254780157|r   16 DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA   70 (165)
Q Consensus        16 D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a   70 (165)
                      |....+++.+.++++|-......+ =-+.++.+.+++++..+  ..++++|..||..
T Consensus        36 ~~~~l~~~~~~i~~~g~~~~~~~~-Dv~~~~~v~~~v~~~~~~~g~iDiLVnNAg~~   91 (254)
T PRK07677         36 TKEKLEEAKLEIEQFPGQVLTVQM-DVRNPDDVQKMIEQIDEKFGRIDALINNAAGN   91 (254)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             999999999999856990999980-38999999999999999839988899757557


No 288
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=27.48  E-value=53  Score=14.98  Aligned_cols=39  Identities=15%  Similarity=0.259  Sum_probs=34.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHH
Q ss_conf             698999999999998099826545301038799998898
Q gi|254780157|r   15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAK   53 (165)
Q Consensus        15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~   53 (165)
                      -|-|+.+.+..+|..-||+|++.-+-..|-|+.+.++.-
T Consensus        20 G~CPF~QR~~mvL~~Kgv~f~vt~VDl~~kPe~f~~~~p   58 (91)
T cd03061          20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAP   58 (91)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCC
T ss_conf             577778999999997499745898554669299996598


No 289
>cd01473 vWA_CTRP CTRP for  CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60  amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=27.24  E-value=54  Score=14.95  Aligned_cols=15  Identities=27%  Similarity=0.063  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780157|r  142 TDRLNEWRTQQTISI  156 (165)
Q Consensus       142 ~~kl~~~r~~~~~~v  156 (165)
                      |+.|..-..+..+++
T Consensus       176 fd~l~~i~~~l~~~v  190 (192)
T cd01473         176 WNNLNGISKFLTDKI  190 (192)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             789999999999972


No 290
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=27.19  E-value=54  Score=14.94  Aligned_cols=38  Identities=29%  Similarity=0.321  Sum_probs=26.3

Q ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEEE----EHHCCHHHH
Q ss_conf             958816989999999999980998265453----010387999
Q gi|254780157|r   10 IMGSQSDWKIMKYAADMLDTLGIDYEARII----SAHRTPDRL   48 (165)
Q Consensus        10 i~GS~SD~~~~~~a~~~L~~~gI~~~~~V~----SAHR~p~~l   48 (165)
                      +.|. ..-+-..+...+|++.|++|+..-.    +-||+|+.+
T Consensus         3 lYg~-~~S~~~rkV~~~l~e~gl~ye~~~v~~~~g~~~~p~f~   44 (73)
T cd03047           3 IWGR-RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFL   44 (73)
T ss_pred             EECC-CCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHH
T ss_conf             9558-99902999999999859998899807877876897899


No 291
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.15  E-value=54  Score=14.94  Aligned_cols=81  Identities=19%  Similarity=0.172  Sum_probs=55.7

Q ss_pred             EEEEECCCCCHHHHHHHH----HHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC--CCEEEEEEECCCCCCHHHHHH-
Q ss_conf             999958816989999999----9999809982654530103879999889876535--982999972676685113465-
Q gi|254780157|r    7 VAIIMGSQSDWKIMKYAA----DMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE--GFKLIIAGAGGAAHLPGMIAA-   79 (165)
Q Consensus         7 V~Ii~GS~SD~~~~~~a~----~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~--~~~viIa~AG~aaaLpgvva~-   79 (165)
                      |+.+..++||-|+.....    ...+++|+  ++.+..+...+++..+.++++..+  +++.+|... .+...+.++.. 
T Consensus         2 ~~~~~~g~~~nPF~~~~~~g~~~aA~~~Gv--~l~v~~~~~d~~~q~~~ie~~I~~~~~vd~Iii~p-~~~~~~~~l~~A   78 (305)
T cd06324           2 VVFLNPGKSDEPFWNSVARFMQAAADDLGI--ELEVLYAERDRFLMLQQARTILQRPDKPDALIFTN-EKSVAPELLRLA   78 (305)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHH
T ss_conf             699089988896999999999999997299--89997399999999999999983637970999879-620018999999


Q ss_pred             -HCCCCEEEECC
Q ss_conf             -22420366125
Q gi|254780157|r   80 -MTSLPVLGVPI   90 (165)
Q Consensus        80 -~t~~PVIgVP~   90 (165)
                       .--.|||.+=.
T Consensus        79 ~~agIPVv~~d~   90 (305)
T cd06324          79 EGAGVKLFLVNS   90 (305)
T ss_pred             HHCCCEEEEECC
T ss_conf             976983999658


No 292
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.00  E-value=54  Score=14.92  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=38.0

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC-------------------------EEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             998874999958816989999999999980998-------------------------2654530103879999889876
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGID-------------------------YEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~-------------------------~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |+++-||++|.|+.|-  +...+++.|-+.|..                         +....+ =-..++.+.++.+..
T Consensus         1 ~~L~gK~~lITGgs~G--IG~aia~~la~~G~~Vii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dlt~~~~v~~~~~~~   77 (248)
T PRK05557          1 MSLEGKVALVTGASRG--IGRAIAERLAAQGANVVLNYASSEAGAEALVAEIGALGGKALAVQG-DVADAESIERAVDEA   77 (248)
T ss_pred             CCCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHH
T ss_conf             9679988999489768--9999999999879989999698565899999999963995899990-389999999999999


Q ss_pred             HH--CCCEEEEEEECCC
Q ss_conf             53--5982999972676
Q gi|254780157|r   56 RF--EGFKLIIAGAGGA   70 (165)
Q Consensus        56 ~~--~~~~viIa~AG~a   70 (165)
                      .+  ..++++|..||..
T Consensus        78 ~~~~g~iD~linnAg~~   94 (248)
T PRK05557         78 KAEFGGVDILVNNAGIT   94 (248)
T ss_pred             HHHCCCCCEEEECCCCC
T ss_conf             99829971999899779


No 293
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I).  TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=26.58  E-value=55  Score=14.88  Aligned_cols=137  Identities=19%  Similarity=0.163  Sum_probs=72.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCC-----EEEEEEEHH-----CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             16989999999999980998-----265453010-----38799998898765359829999726766851134652242
Q gi|254780157|r   14 QSDWKIMKYAADMLDTLGID-----YEARIISAH-----RTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL   83 (165)
Q Consensus        14 ~SD~~~~~~a~~~L~~~gI~-----~~~~V~SAH-----R~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~   83 (165)
                      .......+.....+...+-.     --+.+--.|     -+++++.++.+.+.+.|..+.+=+|=..+++..   .    
T Consensus       104 ~~g~l~~~~i~~~i~~~~~~h~~~~~lv~ient~e~G~v~~~~el~~i~~~a~~~gl~lH~DGARl~nA~~a---~----  176 (338)
T cd06502         104 ENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAA---L----  176 (338)
T ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHHHHHCCCEEEECCCCEECEEEC---C----
T ss_conf             999738999999631568864665207998731289631279999999999997497266536530044541---5----


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCC---------------CHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             036612577666750016998403569862044316753---------------12289999999706999999999999
Q gi|254780157|r   84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSG---------------AINASLLAVAILALDDKELTDRLNEW  148 (165)
Q Consensus        84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~---------------~~NAal~A~~Il~~~d~~i~~kl~~~  148 (165)
                         ||+.. .+..+.|++.=...=--|.|++.+.++...               -.-.+++|+|.+..-++++|.+....
T Consensus       177 ---g~~~~-~~~~~~Dsvs~~~sKglgap~gavl~g~~~~i~~a~~~rK~~Gg~mrq~g~lAAa~~~~L~~~~~~~~l~~  252 (338)
T cd06502         177 ---GVALK-TYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRH  252 (338)
T ss_pred             ---CCCHH-HHHHHCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             ---99989-98641878999665667774324787788999999999986475364599999999999854837899999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999984054
Q gi|254780157|r  149 RTQQTISISEYPK  161 (165)
Q Consensus       149 r~~~~~~v~~~~~  161 (165)
                      -.++.+.+.+.-+
T Consensus       253 dh~~A~~La~~l~  265 (338)
T cd06502         253 DHEMARRLAEALE  265 (338)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999998


No 294
>pfam04743 consensus
Probab=26.58  E-value=29  Score=16.66  Aligned_cols=43  Identities=26%  Similarity=0.500  Sum_probs=31.5

Q ss_pred             HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             403569862044316753122899999997069999999999999
Q gi|254780157|r  105 VQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWR  149 (165)
Q Consensus       105 vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r  149 (165)
                      +.+||||-++-..-+.+  -.+++.-+-.|++.-.+|-+-|+.|-
T Consensus        37 lglPPGV~vGDllq~~~--~~~~L~Q~yLLAvQsN~ITdyL~RFd   79 (160)
T pfam04743        37 LGLPPGVSVGDLLQSEQ--STETLRQAYLLAVQSNNITDYLKRFD   79 (160)
T ss_pred             CCCCCCCCHHHHHHCCC--HHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf             37999864899887031--08999999999998521999998554


No 295
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=26.57  E-value=49  Score=15.22  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=19.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999997069999999999999
Q gi|254780157|r  127 SLLAVAILALDDKELTDRLNEWR  149 (165)
Q Consensus       127 al~A~~Il~~~d~~i~~kl~~~r  149 (165)
                      --.|+.+||++-.-+|+||++|-
T Consensus        74 QtrAa~mLGinR~TLRKKLkqyg   96 (98)
T COG2901          74 QTRAALMLGINRGTLRKKLKKYG   96 (98)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             88999997432889999999826


No 296
>pfam00365 PFK Phosphofructokinase.
Probab=26.56  E-value=55  Score=14.87  Aligned_cols=48  Identities=17%  Similarity=0.352  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH--HHHHCCCCEEEECCC
Q ss_conf             3879999889876535982999972676685113--465224203661257
Q gi|254780157|r   43 RTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM--IAAMTSLPVLGVPII   91 (165)
Q Consensus        43 R~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv--va~~t~~PVIgVP~~   91 (165)
                      +.++...+..++.+..+++.+|.+-|-.. +-++  ++..-..||||+|-.
T Consensus        76 ~~~~~~~~~~~~l~~~~Id~li~IGGd~S-~~~a~~L~~~~~i~vigIPkT  125 (279)
T pfam00365        76 REREGRLKAAENLKKHGIDALVVIGGDGS-YTGADLLTSEHGFNCVGLPGT  125 (279)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHHHHHHHCCCCEEEEECC
T ss_conf             45667999999999848997999669568-999999999729978982034


No 297
>KOG3984 consensus
Probab=26.54  E-value=37  Score=16.03  Aligned_cols=31  Identities=26%  Similarity=0.205  Sum_probs=16.3

Q ss_pred             CCCEEEEEECCC-CCHHHHHHHHHHHHHCCCC
Q ss_conf             887499995881-6989999999999980998
Q gi|254780157|r    3 IAPPVAIIMGSQ-SDWKIMKYAADMLDTLGID   33 (165)
Q Consensus         3 ~~pkV~Ii~GS~-SD~~~~~~a~~~L~~~gI~   33 (165)
                      ++||++||+||- +++.-.-....++..-.||
T Consensus        23 ~rpk~gIICGSgLg~l~~~l~~p~i~pYedIP   54 (286)
T KOG3984          23 IRPKVGIICGSGLGGLADKLSQPVIVPYEDIP   54 (286)
T ss_pred             CCCCEEEEECCCCCHHHHHCCCCEEECHHHCC
T ss_conf             68856899457752166640577784475378


No 298
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=26.47  E-value=55  Score=14.86  Aligned_cols=63  Identities=22%  Similarity=0.208  Sum_probs=50.3

Q ss_pred             EEEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             999958--816989999999999980998265453010387999988987653598299997267
Q gi|254780157|r    7 VAIIMG--SQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG   69 (165)
Q Consensus         7 V~Ii~G--S~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~   69 (165)
                      |.|-.|  +..-.....-+..++++.|++...+...-.|+...+...+..+...|++=+.+..|=
T Consensus        32 isVT~gaggs~~~~t~~~a~~i~~~~gi~~i~Hltcr~~n~~~l~~~L~~~~~~Gi~niLaLrGD   96 (274)
T cd00537          32 VSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGD   96 (274)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99388989856240999999999973998226860178999999999999998598638873588


No 299
>PRK06114 short chain dehydrogenase; Provisional
Probab=26.23  E-value=56  Score=14.83  Aligned_cols=68  Identities=21%  Similarity=0.184  Sum_probs=37.0

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHH-------------------------HHCCCCEEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             98874999958816989999999999-------------------------98099826545301038799998898765
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADML-------------------------DTLGIDYEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L-------------------------~~~gI~~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      +.+-||++|.|+.|-  +...+++.|                         +.+|-.... +..=-+.++.+.+.++...
T Consensus        13 ~L~gKvalVTGa~~G--IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~-~~~Dvt~~~~v~~~v~~~~   89 (262)
T PRK06114         13 DLDGQVAFVTGAGSG--IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQ-IAADVTSKSDLAAAVARTE   89 (262)
T ss_pred             CCCCCEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHH
T ss_conf             989998999684789--9999999999879989999589746999999999965995899-9816899999999999999


Q ss_pred             H--CCCEEEEEEECCCCC
Q ss_conf             3--598299997267668
Q gi|254780157|r   57 F--EGFKLIIAGAGGAAH   72 (165)
Q Consensus        57 ~--~~~~viIa~AG~aaa   72 (165)
                      +  ..++++|-.||....
T Consensus        90 ~~~G~iDiLVNnAGi~~~  107 (262)
T PRK06114         90 AELGALTLAVNAAGIANA  107 (262)
T ss_pred             HHCCCCCEEEECCCCCCC
T ss_conf             981999899989989999


No 300
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=26.22  E-value=34  Score=16.21  Aligned_cols=15  Identities=53%  Similarity=0.879  Sum_probs=7.6

Q ss_pred             HHHHHHHHHCCCCEE
Q ss_conf             999999998099826
Q gi|254780157|r   21 KYAADMLDTLGIDYE   35 (165)
Q Consensus        21 ~~a~~~L~~~gI~~~   35 (165)
                      +++.++|++|||+|+
T Consensus        76 ~pA~~~L~e~gI~~~   90 (283)
T TIGR00292        76 KPAKEILDEFGIRYE   90 (283)
T ss_pred             CHHHHHHHHCCCCEE
T ss_conf             404688886598133


No 301
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=26.20  E-value=56  Score=14.83  Aligned_cols=54  Identities=17%  Similarity=0.249  Sum_probs=37.5

Q ss_pred             HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
Q ss_conf             999999998099826545301038799998898765359829999726766851
Q gi|254780157|r   21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP   74 (165)
Q Consensus        21 ~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp   74 (165)
                      +++.+..++||+++-+.--..-+..+|+.+.++....++.+++|-+-|=+--+.
T Consensus        53 ~~I~~~~~~~g~~~imTs~~h~~GTdRi~Ea~~~l~~~~~d~IInvQGDEPli~  106 (248)
T PRK05450         53 ERIADAVEAFGGEVVMTSADHPSGTDRIAEAAAKLGLSDDDIVVNVQGDEPLIP  106 (248)
T ss_pred             HHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf             524435315686234046454770389999998508777868999359867789


No 302
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=26.10  E-value=56  Score=14.82  Aligned_cols=99  Identities=20%  Similarity=0.289  Sum_probs=52.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCE
Q ss_conf             49999588169899999999999809982654530103879999889876535982999972676685113465224203
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPV   85 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PV   85 (165)
                      |-+++.|. |.. +.++.+..|.+-+    ..|...|+....+.++.++     .|++|+++|..+-+.+-.--- --=|
T Consensus        37 k~vvViGr-S~i-VG~Pla~lL~~~~----atVtichs~T~nl~~~~~~-----ADIvI~A~G~p~~i~~~~ik~-gavv  104 (159)
T pfam02882        37 KNVVVIGR-SNI-VGKPLALLLLNAN----ATVTVCHSKTKDLAEITRE-----ADIVVVAVGKPGLIKADWVKP-GAVV  104 (159)
T ss_pred             CEEEEECC-CCH-HHHHHHHHHHHCC----CEEEEECCCCCCHHHHHHC-----CCEEEEECCCCCCCCHHHCCC-CCEE
T ss_conf             66999888-731-4899999998779----9899981899997896300-----344423158855056988589-9889


Q ss_pred             EEECCC---CCCC-CCCC--CHHHHHH----CCCCCCCEEE
Q ss_conf             661257---7666-7500--1699840----3569862044
Q gi|254780157|r   86 LGVPII---SQTL-GGID--SLLSIVQ----MPAGVPVGTM  116 (165)
Q Consensus        86 IgVP~~---~~~~-~G~d--allS~vq----MP~Gvpvatv  116 (165)
                      |-|=.+   .+.+ +-.|  +......    .|.|+.+.|+
T Consensus       105 IDvGi~~~~~gkl~GDvd~~~v~~~a~~iTPVPGGVGPmTv  145 (159)
T pfam02882       105 IDVGINRVENGKLVGDVDFENVKEKASAITPVPGGVGPMTV  145 (159)
T ss_pred             EEECCCCCCCCCEECCCCHHHHHHHCEEECCCCCCCCHHHH
T ss_conf             98022065899675787778999647286899995069999


No 303
>PRK13117 consensus
Probab=26.07  E-value=56  Score=14.82  Aligned_cols=53  Identities=19%  Similarity=0.208  Sum_probs=35.9

Q ss_pred             CHHH--HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             9899--9999999998099826545301038799998898765359829999726766
Q gi|254780157|r   16 DWKI--MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAA   71 (165)
Q Consensus        16 D~~~--~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aa   71 (165)
                      |+|+  .++....++++|+... ..++..-+.+|+.++.+..  +|.-.+++..|-.+
T Consensus       130 DLP~eE~~~~~~~~~~~gl~~I-~lv~Ptt~~~Ri~~i~~~a--~GFiY~vs~~GvTG  184 (268)
T PRK13117        130 DVPVEESAPFRQAAKKHGIAPI-FICPPNADDDTLRQIASLG--RGYTYLLSRAGVTG  184 (268)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHHHHC--CCEEEEEECCCCCC
T ss_conf             9997885899999986798379-9847999999999999747--98599983677788


No 304
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.91  E-value=57  Score=14.80  Aligned_cols=125  Identities=12%  Similarity=0.114  Sum_probs=72.9

Q ss_pred             EEEEECCC---CC---HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             99995881---69---8999999999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r    7 VAIIMGSQ---SD---WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         7 V~Ii~GS~---SD---~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      +++|.-+-   |+   -.+++.+...+.+.|  |.+-++..+..+++-.++.+....++++-+|......   ...+..+
T Consensus         2 IGlivp~~~~~snpFf~~l~~gie~~~~~~G--y~lll~~~~~~~~~e~~~~~~l~~~~vdGiI~~~~~~---~~~~~~l   76 (268)
T cd06277           2 IGLIASKRILNSPAFYSEIYRAIEEEAKKYG--YNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIS---TEYIKEI   76 (268)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC---HHHHHHH
T ss_conf             8999559877899779999999999999849--9899993899989999999999948987899978999---7999999


Q ss_pred             --CCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCC------------HHHHHHH
Q ss_conf             --242036612577666750016998403569862044316753122899999997-0699------------9999999
Q gi|254780157|r   81 --TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAIL-ALDD------------KELTDRL  145 (165)
Q Consensus        81 --t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il-~~~d------------~~i~~kl  145 (165)
                        ...|++-+=...                ++.++.+|  ..|+ +.|+..|++-| ...+            ...++|+
T Consensus        77 ~~~~~P~V~id~~~----------------~~~~~~~V--~~Dn-~~a~~~a~~~L~~~Ghr~I~~i~~~~~~~~~~~R~  137 (268)
T cd06277          77 KELGIPFVLVDHYI----------------PNEKADCV--LTDN-YSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERY  137 (268)
T ss_pred             HHCCCCEEEECCCC----------------CCCCCCEE--EECH-HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf             97599899967768----------------99999889--9665-99999999999970998369972788881299999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780157|r  146 NEWRTQQTIS  155 (165)
Q Consensus       146 ~~~r~~~~~~  155 (165)
                      .-|++-+++.
T Consensus       138 ~Gf~~al~~~  147 (268)
T cd06277         138 EGYKKALLDH  147 (268)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999985


No 305
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.90  E-value=57  Score=14.80  Aligned_cols=70  Identities=16%  Similarity=0.185  Sum_probs=42.0

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE----------------------EEEHHCCHHHHHHHHHHHHH-
Q ss_conf             9988749999588169899999999999809982654----------------------53010387999988987653-
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR----------------------IISAHRTPDRLIEFAKNARF-   57 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~----------------------V~SAHR~p~~l~~~~~~~~~-   57 (165)
                      |+.+-||++|.|..|..-+...+++.|.+.|-..-+.                      +..=-+.++.+.+..+...+ 
T Consensus         2 ~~L~GK~alVTGaa~g~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T PRK07533          2 MPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPLLMPLDVREPGQLEAVFARIAEE   81 (254)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             98999989996888980899999999998799999982887789999999974598189991699999999999999998


Q ss_pred             -CCCEEEEEEECCC
Q ss_conf             -5982999972676
Q gi|254780157|r   58 -EGFKLIIAGAGGA   70 (165)
Q Consensus        58 -~~~~viIa~AG~a   70 (165)
                       .+++++|--||.+
T Consensus        82 ~G~iDilVnna~~~   95 (254)
T PRK07533         82 WGRLDFVLHSIAFA   95 (254)
T ss_pred             HCCCCEEEECCCCC
T ss_conf             49977897422126


No 306
>PRK06181 short chain dehydrogenase; Provisional
Probab=25.86  E-value=57  Score=14.79  Aligned_cols=56  Identities=13%  Similarity=0.117  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCCC
Q ss_conf             6989999999999980998265453010387999988987653--59829999726766
Q gi|254780157|r   15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGAA   71 (165)
Q Consensus        15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~aa   71 (165)
                      -|.+-.++..+.++.+|.++....+ =-..++.+.+.++...+  ..++++|.-||...
T Consensus        33 r~~~~l~~~~~~l~~~g~~~~~~~~-Dvs~~~~~~~~~~~~~~~~G~iDiLVNNAGi~~   90 (263)
T PRK06181         33 RNEERLASLAQELANYGAEALVVAT-DVSDAEACERLIEAAVAHFGGIDILVNNAGMTM   90 (263)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             8999999999999954996799980-799999999999999998299648998785678


No 307
>PRK09271 flavodoxin; Provisional
Probab=25.68  E-value=57  Score=14.77  Aligned_cols=52  Identities=15%  Similarity=0.180  Sum_probs=35.1

Q ss_pred             EEEEEECCCC--CHHHHHHHHHHHHHCCCCEEEE--------------------EEEH-----HCCHHHHHHHHHHHHH
Q ss_conf             4999958816--9899999999999809982654--------------------5301-----0387999988987653
Q gi|254780157|r    6 PVAIIMGSQS--DWKIMKYAADMLDTLGIDYEAR--------------------IISA-----HRTPDRLIEFAKNARF   57 (165)
Q Consensus         6 kV~Ii~GS~S--D~~~~~~a~~~L~~~gI~~~~~--------------------V~SA-----HR~p~~l~~~~~~~~~   57 (165)
                      ||.|+.+|.|  ...+++-+.+.|++.|.+.+..                    +.+.     -++|+++..|...++.
T Consensus         2 KvlIvYaS~TGNTE~vA~~I~~~l~~~G~eV~~~e~d~~~~~~~~~d~~~yDl~llG~yTwgdG~lPdE~~DF~e~L~~   80 (160)
T PRK09271          2 RILLAYASLSGNTREVARMIAARCEEAGHAVTWVETDLQTLAQAPLDPEEYDLFLLGTWTDNAGRTPPEMKRFIAELVE   80 (160)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             1899998488768999999999999769823798701023220335611188899965704899896678999999986


No 308
>PRK08945 short chain dehydrogenase; Provisional
Probab=25.56  E-value=57  Score=14.76  Aligned_cols=48  Identities=19%  Similarity=0.177  Sum_probs=27.9

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH
Q ss_conf             874999958816989999999999980998265453010387999988987653
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF   57 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~   57 (165)
                      +-||++|.|+.+.  +...+++.|.+-|...    .-..|+.+++.+..++.+.
T Consensus        12 ~gK~~lITGas~G--IG~aiA~~la~~Ga~V----il~~r~~~~l~~~~~el~~   59 (245)
T PRK08945         12 KDRIILVTGAGDG--IGREAALTYARHGATV----ILLGRTEEKLEAVYDEIEA   59 (245)
T ss_pred             CCCEEEEECCCHH--HHHHHHHHHHHCCCEE----EEEECCHHHHHHHHHHHHH
T ss_conf             9798999488618--9999999999879989----9996988999999999997


No 309
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=25.54  E-value=57  Score=14.75  Aligned_cols=129  Identities=14%  Similarity=0.122  Sum_probs=74.3

Q ss_pred             EEEEECCCCCH--HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHH-HHHCCC
Q ss_conf             99995881698--999999999998099826545301038799998898765359829999726766851134-652242
Q gi|254780157|r    7 VAIIMGSQSDW--KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI-AAMTSL   83 (165)
Q Consensus         7 V~Ii~GS~SD~--~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvv-a~~t~~   83 (165)
                      |+|+--+++.+  .+.+.+.+..+++|++.++. ..+.-++++-.+.++++..++++.||...--+..+...+ .+.--.
T Consensus         2 i~iv~~~~npf~~~v~~G~~~aA~e~Gv~v~~~-~~~~~d~~~Q~~~i~~~i~~~vDaIii~p~d~~~~~~~~~~a~agI   80 (271)
T cd06314           2 IAVVTNGASPFWKIAEAGVKAAGKELGVDVEFV-VPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAAGI   80 (271)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEE-ECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             899289999669999999999999859989999-6899999999999999997599999992687455699999996599


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---------------CCHHHHHHHHHH
Q ss_conf             03661257766675001699840356986204431675312289999999706---------------999999999999
Q gi|254780157|r   84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILAL---------------DDKELTDRLNEW  148 (165)
Q Consensus        84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~---------------~d~~i~~kl~~~  148 (165)
                      |||.+=...               |.+--...  ++.|+ +.++..+++.|.-               ......+|..-|
T Consensus        81 pVv~~d~~~---------------~~~~~~~~--vg~dn-~~~G~~~~~~l~~~~~~~g~v~i~~g~~~~~~~~~R~~Gf  142 (271)
T cd06314          81 KLITTDSDA---------------PDSGRYVY--IGTDN-YAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGI  142 (271)
T ss_pred             CEEEEECCC---------------CCCCCEEE--EECCH-HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf             889980788---------------87674699--90699-9999999999999759998699994589987899999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780157|r  149 RTQQTI  154 (165)
Q Consensus       149 r~~~~~  154 (165)
                      ++.+.+
T Consensus       143 ~~~l~~  148 (271)
T cd06314         143 KDAIKD  148 (271)
T ss_pred             HHHHHH
T ss_conf             999962


No 310
>PRK07024 short chain dehydrogenase; Provisional
Probab=25.50  E-value=58  Score=14.75  Aligned_cols=65  Identities=23%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEE--------------------EEEEE-HHCCHHHHHHHHHHHHH--CCC
Q ss_conf             87499995881698999999999998099826--------------------54530-10387999988987653--598
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYE--------------------ARIIS-AHRTPDRLIEFAKNARF--EGF   60 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~--------------------~~V~S-AHR~p~~l~~~~~~~~~--~~~   60 (165)
                      .||.++|.|.+|  -+.++.+..|.+-|....                    ..+.. =-..++.+.+..++..+  ..+
T Consensus         1 M~~~VlITGass--GIG~a~A~~la~~G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i   78 (256)
T PRK07024          1 MPLKVFITGASS--GIGQALAREYARQGATLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGCP   78 (256)
T ss_pred             CCCEEEEECCCH--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             999899984602--999999999998899899998988999999997679976999811799999999999999983998


Q ss_pred             EEEEEEECCC
Q ss_conf             2999972676
Q gi|254780157|r   61 KLIIAGAGGA   70 (165)
Q Consensus        61 ~viIa~AG~a   70 (165)
                      +++|..||..
T Consensus        79 DilinNAGi~   88 (256)
T PRK07024         79 DVVIANAGIS   88 (256)
T ss_pred             CEEEECCCCC
T ss_conf             7999888556


No 311
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.42  E-value=48  Score=15.27  Aligned_cols=79  Identities=16%  Similarity=0.160  Sum_probs=38.8

Q ss_pred             EEEEEECC--CCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             49999588--1698999999999998099826545301038799998898765359829999726766851134652242
Q gi|254780157|r    6 PVAIIMGS--QSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL   83 (165)
Q Consensus         6 kV~Ii~GS--~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~   83 (165)
                      ||+|+.--  ......+++..+.|++ +.+.-+.--+|......-.    ...+-.++.+|+. |+.+.+--+. ..+..
T Consensus         2 Ki~iv~~~~~~~a~~~a~~l~~~L~~-~~~v~~d~~~a~~l~~~~~----~~~e~~~Dlvi~i-GGDGTlLr~~-~~~~~   74 (272)
T PRK01185          2 KVAFVIRKDCKRCANIARSIISLLPS-DWEIIYDKEAAKFLKKPGL----DINEISADIIIVI-GGDGTVLRTL-QFAKG   74 (272)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEHHHHHHCCCCCC----CCCCCCCCEEEEE-CCCHHHHHHH-HHCCC
T ss_conf             89999978998999999999999966-9919985688887099999----8556898899997-7839999999-87799


Q ss_pred             CEEEECCC
Q ss_conf             03661257
Q gi|254780157|r   84 PVLGVPII   91 (165)
Q Consensus        84 PVIgVP~~   91 (165)
                      |++|+-.-
T Consensus        75 PilGIN~G   82 (272)
T PRK01185         75 PVLGINMG   82 (272)
T ss_pred             CEEEECCC
T ss_conf             99998178


No 312
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457; InterPro: IPR006354   These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are all from the Gram-positive (low-GC) bacteria..
Probab=25.41  E-value=57  Score=14.80  Aligned_cols=57  Identities=26%  Similarity=0.331  Sum_probs=40.8

Q ss_pred             CCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf             242036612577666750016998403569862044316753122899999997069999
Q gi|254780157|r   81 TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKE  140 (165)
Q Consensus        81 t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~  140 (165)
                      .+=|=|++|+.-|-+=|-.||.|.+..-.||-+.-  ||+-++. ===-|.+-||+.-+|
T Consensus       143 ~TNgD~aiPTErGLlPGnGSL~~vl~v~TgVkPv~--iGKP~~I-I~e~A~~~LGt~~eE  199 (251)
T TIGR01457       143 STNGDLAIPTERGLLPGNGSLIAVLEVATGVKPVY--IGKPEAI-IMEKALKRLGTEKEE  199 (251)
T ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE--EECCCHH-HHHHHHHHCCCCEEE
T ss_conf             23888767623578885078999987735721488--7178735-799899870897024


No 313
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=25.40  E-value=58  Score=14.74  Aligned_cols=55  Identities=20%  Similarity=0.227  Sum_probs=42.0

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHH-CCCCEEEEEEEHHCCHHHHHHHHHHHHH
Q ss_conf             887499995881698999999999998-0998265453010387999988987653
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDT-LGIDYEARIISAHRTPDRLIEFAKNARF   57 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~-~gI~~~~~V~SAHR~p~~l~~~~~~~~~   57 (165)
                      ++-+|+-|.=--.|..+++++.+++++ |-++|++++.--.|+-.-+..|+++-++
T Consensus        69 L~V~VGrI~veled~~~i~~I~eiC~e~~pf~y~i~~G~f~r~~~TvtDY~KyG~~  124 (150)
T TIGR03260        69 LRVQVGRIILELEDEDIVEEIEEICKEMLPFGYEVRVGKFLRTKPTVTDYIKYGED  124 (150)
T ss_pred             EEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCHHHHHHCCCC
T ss_conf             99998389999727668999999999757985563214786048854468770888


No 314
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911    This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=25.37  E-value=58  Score=14.73  Aligned_cols=34  Identities=15%  Similarity=0.354  Sum_probs=18.6

Q ss_pred             CCCEEEEEEEHHC---CHHHHHHHHHHHHHCCCEEEE
Q ss_conf             9982654530103---879999889876535982999
Q gi|254780157|r   31 GIDYEARIISAHR---TPDRLIEFAKNARFEGFKLII   64 (165)
Q Consensus        31 gI~~~~~V~SAHR---~p~~l~~~~~~~~~~~~~viI   64 (165)
                      .-+-.+.+.-+-|   .|+++++++.++.++|++|+|
T Consensus       107 ~~~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWv  143 (307)
T TIGR01212       107 SEDDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWV  143 (307)
T ss_pred             HHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf             3278057753688987747899999999549758999


No 315
>LOAD_USPA consensus
Probab=25.36  E-value=58  Score=14.73  Aligned_cols=58  Identities=16%  Similarity=0.290  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             99999999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r   19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus        19 ~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      .+++....+...+.+++..+...+.  .  ..+.+..+..+.+++|.++-....+....-|.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~i~~g~~--~--~~I~~~~~~~~~dliVmG~~~~~~~~~~~~Gs  118 (135)
T LOAD_USPA        61 LLEEALELLEEAGVKIDVEVEEGSP--A--EAILELAEESNADLIVVGSRGRGGLRRLLLGS  118 (135)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEECC--H--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCH
T ss_conf             9999999998639973999999642--8--99999986057767999468997522460372


No 316
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=25.34  E-value=58  Score=14.73  Aligned_cols=77  Identities=14%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             EEEEECCCCCHHH---HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCHHHHHH--H
Q ss_conf             9999588169899---999999999809982654530103879999889876535982999972-676685113465--2
Q gi|254780157|r    7 VAIIMGSQSDWKI---MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGA-GGAAHLPGMIAA--M   80 (165)
Q Consensus         7 V~Ii~GS~SD~~~---~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~A-G~aaaLpgvva~--~   80 (165)
                      |+++..+-++--+   .+.+...+.+.|  |.+-+.+.+..+++-.++++.+.+++++-+|... ....   .....  .
T Consensus         2 IGvivpdi~npff~~l~~~ie~~~~~~G--y~~ll~~s~~d~~~e~~~i~~l~~~~vdGiIi~~~~~~~---~~~~~~~~   76 (264)
T cd06274           2 IGLIIPDLENRSFARIAKRLEALARERG--YQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPD---DPYYLCQK   76 (264)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCH---HHHHHHHH
T ss_conf             8999779878799999999999999869--989999389998999999999996699879976788987---99999997


Q ss_pred             CCCCEEEE
Q ss_conf             24203661
Q gi|254780157|r   81 TSLPVLGV   88 (165)
Q Consensus        81 t~~PVIgV   88 (165)
                      ...||+-+
T Consensus        77 ~~iPvV~i   84 (264)
T cd06274          77 AGLPVVAL   84 (264)
T ss_pred             CCCCEEEE
T ss_conf             59988998


No 317
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=25.15  E-value=58  Score=14.71  Aligned_cols=68  Identities=10%  Similarity=0.029  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEEH---HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCC
Q ss_conf             99999999998099826545301---03879999889876535982999972676685113465224203661257
Q gi|254780157|r   19 IMKYAADMLDTLGIDYEARIISA---HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPII   91 (165)
Q Consensus        19 ~~~~a~~~L~~~gI~~~~~V~SA---HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~   91 (165)
                      ..+++...+++.|++....-.+=   |+.   +.++++.+.+++..+.++-.|.  -|.-.+..+...|...+-++
T Consensus        60 s~ee~~~~~~e~Gap~V~itGGEPLLr~d---l~eIv~~a~~~g~~v~l~TNG~--Ll~k~i~~~~~~~~~~~~Vs  130 (318)
T TIGR03470        60 SVEECLRAVDECGAPVVSIPGGEPLLHPE---IDEIVRGLVARKKFVYLCTNAL--LLEKKLDKFEPSPYLTFSVH  130 (318)
T ss_pred             CHHHHHHHHHHCCCCEEEECCCCCCCCCC---HHHHHHHHHHCCCEEEEECCHH--HHHHHHHHHHHCCCCEEEEE
T ss_conf             99999999998499789951887455647---9999999997599799977552--00999999851888369998


No 318
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=25.15  E-value=58  Score=14.71  Aligned_cols=92  Identities=15%  Similarity=0.086  Sum_probs=63.3

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHH--HC--CCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH-HH
Q ss_conf             88749999588169899999999999--80--998265453010387999988987653598299997267668511-34
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLD--TL--GIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG-MI   77 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~--~~--gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpg-vv   77 (165)
                      .+-+|+.+-|=....-........+-  ..  .|+..+.+++..-.|.+-.+..+.+.+.|++||...||..+-.-= +.
T Consensus       160 k~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np~i~v~v~~~gsf~D~~k~k~~a~~li~~GaDVI~~~ag~~~~gv~~~A  239 (345)
T COG1744         160 KSGKVGFVGGMDIPEVNRFINGFLAGAKSVNPDIKVKVVYVGSFSDPAKGKEAANALIDQGADVIYPAAGGTGVGVFQAA  239 (345)
T ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf             56856899634152136789999999998489965899990686782778999999997699899867888762299999


Q ss_pred             HHHCCCCEEEECCCCCCC
Q ss_conf             652242036612577666
Q gi|254780157|r   78 AAMTSLPVLGVPIISQTL   95 (165)
Q Consensus        78 a~~t~~PVIgVP~~~~~~   95 (165)
                      ..+..+. ||+=.+..++
T Consensus       240 ~~~~~~~-iGvdsDQ~~~  256 (345)
T COG1744         240 KELGAYA-IGVDSDQSYL  256 (345)
T ss_pred             HHHCCCC-EEEECCCCCC
T ss_conf             9808971-6885210003


No 319
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=24.99  E-value=59  Score=14.69  Aligned_cols=135  Identities=17%  Similarity=0.233  Sum_probs=70.3

Q ss_pred             EEEEEECCCCCH----HHHHHHHHHHHHCCCCEEEE---------EEEHHCCHHHHHHHHHHHHHCCCE-EEEEEECCCC
Q ss_conf             499995881698----99999999999809982654---------530103879999889876535982-9999726766
Q gi|254780157|r    6 PVAIIMGSQSDW----KIMKYAADMLDTLGIDYEAR---------IISAHRTPDRLIEFAKNARFEGFK-LIIAGAGGAA   71 (165)
Q Consensus         6 kV~Ii~GS~SD~----~~~~~a~~~L~~~gI~~~~~---------V~SAHR~p~~l~~~~~~~~~~~~~-viIa~AG~aa   71 (165)
                      ||.+|.||-+.-    ..++.+.+.|+..|++.+..         ...++-.+..+.++.+....  .+ ++|+-----+
T Consensus         1 KIv~IsGS~r~~S~t~~l~~~~~~~l~~~g~~~~~idl~dlp~~~l~~~~~~~~~v~~~~~~v~~--ADglIiatP~Y~~   78 (171)
T TIGR03567         1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQ--ADGVVVATPVYKA   78 (171)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCEEEEECCCCCC
T ss_conf             99999898998886999999999999875996998433568931002356799899999999985--7945997553167


Q ss_pred             CCHHHH---------HHHCCCCEEEECCCCCCCC-------CCCCHHHHHH---CCCCCCCEEEECCCCCCH--HHHHHH
Q ss_conf             851134---------6522420366125776667-------5001699840---356986204431675312--289999
Q gi|254780157|r   72 HLPGMI---------AAMTSLPVLGVPIISQTLG-------GIDSLLSIVQ---MPAGVPVGTMAIGQSGAI--NASLLA  130 (165)
Q Consensus        72 aLpgvv---------a~~t~~PVIgVP~~~~~~~-------G~dallS~vq---MP~Gvpvatv~vg~~~~~--NAal~A  130 (165)
                      ..||+.         .++..+||+=+-+ +|...       .+..+++.+.   +|+|+-.    ...+-.+  .-.+  
T Consensus        79 S~sG~LKn~lD~l~~~~l~gKpVl~~at-gG~~~h~la~~~~Lrpvl~~l~A~~v~~~v~~----~~~~~~~~~~g~~--  151 (171)
T TIGR03567        79 SYSGVLKALLDLLPQRALRGKVVLPIAT-GGSIAHLLAIDYALKPVLSALGARHILPGVFA----LDSQIERDEDGTL--  151 (171)
T ss_pred             CCCHHHHHHHHHCCHHHHCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHHHCCEECCCEEEE----ECHHHHCCCCCCC--
T ss_conf             7788999999957946648987999962-78446678999989999998398865531787----4203213677763--


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             999706999999999999999999
Q gi|254780157|r  131 VAILALDDKELTDRLNEWRTQQTI  154 (165)
Q Consensus       131 ~~Il~~~d~~i~~kl~~~r~~~~~  154 (165)
                           +-|+++++||.+.-++..+
T Consensus       152 -----~id~~~~~Rl~~~v~~~~~  170 (171)
T TIGR03567       152 -----QLDEEIKERLDEALEDLVQ  170 (171)
T ss_pred             -----CCCHHHHHHHHHHHHHHHH
T ss_conf             -----3499999999999999973


No 320
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=24.89  E-value=59  Score=14.68  Aligned_cols=16  Identities=13%  Similarity=0.135  Sum_probs=6.8

Q ss_pred             HHHHH-HHHHHHHCCCC
Q ss_conf             99999-99999980998
Q gi|254780157|r   18 KIMKY-AADMLDTLGID   33 (165)
Q Consensus        18 ~~~~~-a~~~L~~~gI~   33 (165)
                      ..++. .....+.|.|.
T Consensus        20 ~~~k~F~~~lv~~f~I~   36 (186)
T cd01471          20 THVVPFLHTFVQNLNIS   36 (186)
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             99999999999974969


No 321
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin, 
Probab=24.88  E-value=59  Score=14.67  Aligned_cols=36  Identities=14%  Similarity=0.033  Sum_probs=27.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHH
Q ss_conf             698999999999998099826545301038799998
Q gi|254780157|r   15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIE   50 (165)
Q Consensus        15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~   50 (165)
                      ..-|....+...|++.||+||..-...-..++.+.+
T Consensus         7 ~~Sp~~~rvriaL~eKgi~ye~~~~~~~~~~~~~~~   42 (74)
T cd03058           7 WASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLA   42 (74)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf             788589999999998699738997564558778996


No 322
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.72  E-value=59  Score=14.66  Aligned_cols=70  Identities=13%  Similarity=0.084  Sum_probs=37.8

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE----------------------EEEHHCCHHHHHHHHHHHHH-
Q ss_conf             9988749999588169899999999999809982654----------------------53010387999988987653-
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR----------------------IISAHRTPDRLIEFAKNARF-   57 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~----------------------V~SAHR~p~~l~~~~~~~~~-   57 (165)
                      |.++-|+++|.|..|..-+...+++.|.+-|-..-+.                      +..--..++.+.++.++..+ 
T Consensus         1 M~L~GK~alITGaag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvs~~~~v~~~~~~i~~~   80 (274)
T PRK08415          1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNDALKKRVEPIAQELGSPYVYELDVSKEEHFKSLAESIKKD   80 (274)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             92899879998999983799999999998699999984887899999999986299769990289999999999999998


Q ss_pred             -CCCEEEEEEECCC
Q ss_conf             -5982999972676
Q gi|254780157|r   58 -EGFKLIIAGAGGA   70 (165)
Q Consensus        58 -~~~~viIa~AG~a   70 (165)
                       ..++++|-.||..
T Consensus        81 ~G~iDilVnnag~~   94 (274)
T PRK08415         81 LGEIDFIVHSVAFA   94 (274)
T ss_pred             HCCCCEEEECCCCC
T ss_conf             58988885335557


No 323
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294   This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=24.60  E-value=60  Score=14.64  Aligned_cols=62  Identities=21%  Similarity=0.090  Sum_probs=41.1

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             749999588169899999999999809982654530103879999889876535982999972676
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA   70 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~a   70 (165)
                      .||++|.||+|=  +...++..|.+-|  +.+.+.+.-...+...+..+..+..|.+++=-.+-|+
T Consensus         1 ~ktalVTGaaSG--IG~~iA~~LA~aG--a~v~~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T   62 (258)
T TIGR01963         1 GKTALVTGAASG--IGLAIAKALAAAG--ANVVVNDLGEADEGAEAAAKVATDAGGSVIYLVADVT   62 (258)
T ss_pred             CCEEEEECCCHH--HHHHHHHHHHHCC--CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             948999658716--7899999998729--8899846788789999999999961883577514788


No 324
>PTZ00249 variable surface protein Vir28; Provisional
Probab=24.52  E-value=37  Score=15.95  Aligned_cols=41  Identities=27%  Similarity=0.592  Sum_probs=27.1

Q ss_pred             ECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEE
Q ss_conf             26766851134652242036612577666750016998403569862044
Q gi|254780157|r   67 AGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTM  116 (165)
Q Consensus        67 AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv  116 (165)
                      +-+.++.+||+.+--+.||.||      -+||.||+=...   -.||+|.
T Consensus       424 ~~i~~aiS~vL~~VDPVPVvGV------SGGMGALFLLFR---YTPvGsF  464 (516)
T PTZ00249        424 GTIKGAVSNVLEAVEPVPVLGV------SGGMGALYLLLK---YTPIGSL  464 (516)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEE------CCCHHHHHHHHH---CCCCCCC
T ss_conf             0123577653045788771111------472356888760---0665330


No 325
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=24.36  E-value=60  Score=14.61  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=15.7

Q ss_pred             CCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             09982654530103879999889876535982999972676685
Q gi|254780157|r   30 LGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHL   73 (165)
Q Consensus        30 ~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaL   73 (165)
                      .|++++..+.....    ...+.+..+..+++.+|.++-....+
T Consensus        68 ~~~~~~~~~~~~~~----~~~i~~~a~~~~~dliV~G~~~~~~~  107 (130)
T cd00293          68 AGVKVETVVLEGDP----AEAILEAAEELGADLIVMGSRGRSGL  107 (130)
T ss_pred             CCCCEEEEEEECCH----HHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             79838999994661----89998877761188999947999754


No 326
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans,  glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=24.33  E-value=60  Score=14.61  Aligned_cols=108  Identities=15%  Similarity=0.018  Sum_probs=63.0

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEE---EHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH----
Q ss_conf             74999958816989999999999980998-265453---0103879999889876535982999972676685113----
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGID-YEARII---SAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM----   76 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~-~~~~V~---SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv----   76 (165)
                      |+|.||.--....+..+++...|-...-| +|+-|+   |--.+.+.+.++.+.+......+++  .+......+-    
T Consensus         1 P~VSIivP~~nee~~i~~~l~sll~qdYp~~Eiivv~d~s~D~t~~i~~~~~~~~p~~~~~~~~--~~~~~g~~~K~~~l   78 (196)
T cd02520           1 PGVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLI--GGEKVGINPKVNNL   78 (196)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE--CCCCCCCCHHHHHH
T ss_conf             9679999689992779999999996689980899997899997899999987428776659997--68887844899999


Q ss_pred             --HHHHCCCCEEEECCCCCCCCCCCCHHHHHHC--CCCCCCEE
Q ss_conf             --4652242036612577666750016998403--56986204
Q gi|254780157|r   77 --IAAMTSLPVLGVPIISQTLGGIDSLLSIVQM--PAGVPVGT  115 (165)
Q Consensus        77 --va~~t~~PVIgVP~~~~~~~G~dallS~vqM--P~Gvpvat  115 (165)
                        -.......+|.+ .+....-.-|.|-.+++.  -+++.+.|
T Consensus        79 ~~g~~~a~gdii~~-~DaD~~~~~~~L~~lv~~f~~p~vg~V~  120 (196)
T cd02520          79 IKGYEEARYDILVI-SDSDISVPPDYLRRMVAPLMDPGVGLVT  120 (196)
T ss_pred             HHHHHHCCCCEEEE-ECCCCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf             99999645899999-8899772955999999985699946796


No 327
>PRK13140 consensus
Probab=24.15  E-value=61  Score=14.59  Aligned_cols=55  Identities=15%  Similarity=0.373  Sum_probs=38.3

Q ss_pred             CCHHHHH---HHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             6989999---999999980998265453010387999988987653598299997267668
Q gi|254780157|r   15 SDWKIMK---YAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH   72 (165)
Q Consensus        15 SD~~~~~---~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaa   72 (165)
                      -|+|+-|   +....+++.|+.. +..++.+-+.+|+.++.+..  +|.-.+++..|-.+.
T Consensus       125 pDLP~ee~~~~~~~~~~~~~i~~-I~lvaPtt~~~Ri~~i~~~a--~gFiY~vs~~GvTG~  182 (257)
T PRK13140        125 PDLPFDDYQEHYKEIFEKYGLKN-IMLITPQTSEERIREIDSHT--DGFIYMVSSASTTGA  182 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHC--CCCEEECCCCCCCCC
T ss_conf             59985675899999999869977-99868999899999999739--996687036566688


No 328
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=23.99  E-value=61  Score=14.57  Aligned_cols=131  Identities=20%  Similarity=0.219  Sum_probs=72.8

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH-
Q ss_conf             9887499995881698999999999998099826545301038799998898765359829999726766851134652-
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-   80 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-   80 (165)
                      ..+++|+||.=-+=-.--.|....+.+.+|+|..+-.     +|..+.+.+..+.+. ..|+|--||++.--+-.++-+ 
T Consensus       231 ~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~-----~~~el~~ai~~l~~~-d~ILVDTaGrs~~D~~~i~el~  304 (407)
T COG1419         231 KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVY-----SPKELAEAIEALRDC-DVILVDTAGRSQYDKEKIEELK  304 (407)
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEC-----CHHHHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHH
T ss_conf             2576068997144115289999999998699559963-----999999999985318-8899968998833789999999


Q ss_pred             -------------------------------CCCCEEEECCC-CCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCH----
Q ss_conf             -------------------------------24203661257-766675001699840356986204431675312----
Q gi|254780157|r   81 -------------------------------TSLPVLGVPII-SQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI----  124 (165)
Q Consensus        81 -------------------------------t~~PVIgVP~~-~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~----  124 (165)
                                                     ..+|.=||=.- -+--..+.+++|+++ -.+.||+-+..|-.=+.    
T Consensus       305 ~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~~~-e~~~PV~YvT~GQ~VPeDI~v  383 (407)
T COG1419         305 ELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLMY-ETRLPVSYVTNGQRVPEDIVV  383 (407)
T ss_pred             HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEECCCCCCCHHHH
T ss_conf             9970356621799984576468899999972458866168971335676338999999-968974997179878703553


Q ss_pred             -HHHHHHHHHHHCCCH
Q ss_conf             -289999999706999
Q gi|254780157|r  125 -NASLLAVAILALDDK  139 (165)
Q Consensus       125 -NAal~A~~Il~~~d~  139 (165)
                       |--+++.+|++...+
T Consensus       384 a~~~~Lv~~~~g~~~~  399 (407)
T COG1419         384 ANPDYLVRRILGTFAN  399 (407)
T ss_pred             CCHHHHHHHHHCCCCC
T ss_conf             5868899998612144


No 329
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT).  MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein.  The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=23.87  E-value=62  Score=14.55  Aligned_cols=76  Identities=22%  Similarity=0.239  Sum_probs=44.9

Q ss_pred             CCCEEEEEECCCCCHHH-------------HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             88749999588169899-------------99999999980998265453010387999988987653598299997267
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKI-------------MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG   69 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~-------------~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~   69 (165)
                      .+|||+|+.-++-=.+.             .--....|+++|++....-. .--+++.+.+.++++. +.++++|...|-
T Consensus       167 ~~prV~iisTGdELv~~~~~~~~g~i~dsN~~~L~a~l~~~G~~~~~~~~-v~Dd~~~l~~~l~~a~-~~~DiiIttGG~  244 (394)
T cd00887         167 RRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGI-VPDDPEALREALEEAL-EEADVVITSGGV  244 (394)
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCEEEEECC-CCCCHHHHHHHHHHHH-HCCCEEEEECCC
T ss_conf             01389999623414288974899908735799999999978998999673-1899999999999764-309999992774


Q ss_pred             C----CCCHHHHHHH
Q ss_conf             6----6851134652
Q gi|254780157|r   70 A----AHLPGMIAAM   80 (165)
Q Consensus        70 a----aaLpgvva~~   80 (165)
                      |    .+++.++..+
T Consensus       245 S~G~~D~v~~~l~~l  259 (394)
T cd00887         245 SVGDYDFVKEVLEEL  259 (394)
T ss_pred             CCCCCCHHHHHHHHC
T ss_conf             268763399999977


No 330
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=23.70  E-value=62  Score=14.53  Aligned_cols=150  Identities=21%  Similarity=0.191  Sum_probs=82.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE---EEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             499995881698999999999998099826545---30103879999889876535982999972676685113465224
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI---ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V---~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      .+.-|.-+-||.+.++.+.+..++.|-..+.-+   .|.-.+++.+.++.+.+++-|.+ .|++.-+++-|..--+....
T Consensus       111 dv~rifd~lndi~nl~~ai~~~k~~G~~~~~~i~yt~sp~~t~~yyv~~a~~l~~~Gad-~I~ikD~aGll~P~~~~eLV  189 (463)
T PRK12331        111 DIIRIFDALNDVRNLQTAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEIGAD-SICIKDMAGILTPYVAYELV  189 (463)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHH
T ss_conf             97887405664677899999999707869999997258867699999999999964998-89986786776889999999


Q ss_pred             ---CCEEEECCC--CCCCCCCCCHHHHHHCCCCCCCEEEECC-----CC-CCHHHHHHHHHHHHCC---CHHHHHHHHHH
Q ss_conf             ---203661257--7666750016998403569862044316-----75-3122899999997069---99999999999
Q gi|254780157|r   83 ---LPVLGVPII--SQTLGGIDSLLSIVQMPAGVPVGTMAIG-----QS-GAINASLLAVAILALD---DKELTDRLNEW  148 (165)
Q Consensus        83 ---~PVIgVP~~--~~~~~G~dallS~vqMP~Gvpvatv~vg-----~~-~~~NAal~A~~Il~~~---d~~i~~kl~~~  148 (165)
                         +-.+++|+.  +.+-.|+.-.-++.-.-.|+-+.-+++.     -+ -..++-+.+.+-.+..   |.+.-.++.+|
T Consensus       190 ~aLk~~~~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~~~~s~gtsqP~~~s~v~~l~~~~~~~~ld~~~l~~i~~y  269 (463)
T PRK12331        190 KCIKENVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVIALQDLGYDTGLDLEELSEIAEY  269 (463)
T ss_pred             HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             99997449856998368875799999999984999996235354679789879999999853899999899999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780157|r  149 RTQQTISI  156 (165)
Q Consensus       149 r~~~~~~v  156 (165)
                      -++.+++-
T Consensus       270 ~~~vr~~y  277 (463)
T PRK12331        270 FNPIRDHY  277 (463)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 331
>PRK06703 flavodoxin; Provisional
Probab=23.50  E-value=63  Score=14.51  Aligned_cols=126  Identities=11%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             CEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCC
Q ss_conf             749999588169--899999999999809982654530103879999889876535982999972676685113465224
Q gi|254780157|r    5 PPVAIIMGSQSD--WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTS   82 (165)
Q Consensus         5 pkV~Ii~GS~SD--~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~   82 (165)
                      .||.|+.||.+-  ..+++.+.+.|+..|++.++.-.+-. .++.+.++       ..-+|++-.=+.+.+|.-.-    
T Consensus         2 ~Kv~I~YgS~tGnte~~A~~i~~~l~~~g~~v~~~~~~~~-~~~~l~~~-------d~li~gtsT~G~Ge~P~~~~----   69 (151)
T PRK06703          2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM-DAEELLAY-------DGIILGSYTWGDGDLPYEAE----   69 (151)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHCC-------CCEEEEEECCCCCCCCHHHH----
T ss_conf             8189999898617899999999999857996389760319-98898428-------84599973379986846699----


Q ss_pred             CCEEEECCCCCCCCCCCCHHHHHH--CCCCCCCEEEECCCCCC--HHHH--HHHHHHHHC---------------CCHHH
Q ss_conf             203661257766675001699840--35698620443167531--2289--999999706---------------99999
Q gi|254780157|r   83 LPVLGVPIISQTLGGIDSLLSIVQ--MPAGVPVGTMAIGQSGA--INAS--LLAVAILAL---------------DDKEL  141 (165)
Q Consensus        83 ~PVIgVP~~~~~~~G~dallS~vq--MP~Gvpvatv~vg~~~~--~NAa--l~A~~Il~~---------------~d~~i  141 (165)
                                       .++..+.  -.+|..++..+.|..+-  |+.|  .+..++-.+               .+++-
T Consensus        70 -----------------~f~~~l~~~~l~g~~~avfGlGDs~Y~~fc~a~~~~~~~l~~~Ga~~v~~~l~id~~pd~ded  132 (151)
T PRK06703         70 -----------------DFHEDLENIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDED  132 (151)
T ss_pred             -----------------HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCHHH
T ss_conf             -----------------999998718889999999984388747783999999999998799883587699779998799


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999840
Q gi|254780157|r  142 TDRLNEWRTQQTISISEY  159 (165)
Q Consensus       142 ~~kl~~~r~~~~~~v~~~  159 (165)
                      -++.++|-....+++++.
T Consensus       133 ~~~c~~~~~~~a~~~k~~  150 (151)
T PRK06703        133 VEKCSNFAIAFAEKFAQQ  150 (151)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999998735


No 332
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.48  E-value=63  Score=14.50  Aligned_cols=66  Identities=14%  Similarity=0.133  Sum_probs=36.8

Q ss_pred             CCEEEEEECCCC----------------------CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC--C
Q ss_conf             874999958816----------------------9899999999999809982654530103879999889876535--9
Q gi|254780157|r    4 APPVAIIMGSQS----------------------DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE--G   59 (165)
Q Consensus         4 ~pkV~Ii~GS~S----------------------D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~--~   59 (165)
                      +-||++|.|+.+                      +.+-.++..+.++..|.+... +..=.+.++.+.++.+...++  .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~D~~~~~~v~~~~~~~~~~~g~   81 (258)
T PRK12429          3 KGKTALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAKAAEAIKKAGGKAIG-VAMDVTDEEAINAGIDKVVETFGG   81 (258)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHHHHHCC
T ss_conf             9598999488758999999999987999999979889999999999844991899-983589999999999999998299


Q ss_pred             CEEEEEEECCC
Q ss_conf             82999972676
Q gi|254780157|r   60 FKLIIAGAGGA   70 (165)
Q Consensus        60 ~~viIa~AG~a   70 (165)
                      ++++|..||..
T Consensus        82 iDiLVnnAG~~   92 (258)
T PRK12429         82 VDILVNNAGIQ   92 (258)
T ss_pred             CCEEEECCCCC
T ss_conf             70999899888


No 333
>PRK08278 short chain dehydrogenase; Provisional
Probab=23.43  E-value=63  Score=14.50  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=41.1

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------------------------------EEEHHCCHHHHHH
Q ss_conf             9988749999588169899999999999809982654------------------------------5301038799998
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEAR------------------------------IISAHRTPDRLIE   50 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~------------------------------V~SAHR~p~~l~~   50 (165)
                      |+++-||++|.|+.+  -+...+++.|-+.|...-+.                              +..=.+.++.+.+
T Consensus         2 m~L~gKvalVTGas~--GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~l~~~~~~~a~e~~~~g~~~~~~~~Dv~~~~~v~~   79 (273)
T PRK08278          2 MSLSGKTLFITGASR--GIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAAEIEAAGGQALPLVGDVRDEDQVAA   79 (273)
T ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf             898999899948765--999999999998799899996772221334548999999999749908999711799999999


Q ss_pred             HHHHHHH--CCCEEEEEEECCC
Q ss_conf             8987653--5982999972676
Q gi|254780157|r   51 FAKNARF--EGFKLIIAGAGGA   70 (165)
Q Consensus        51 ~~~~~~~--~~~~viIa~AG~a   70 (165)
                      .++...+  .+++++|.-||..
T Consensus        80 ~v~~~~~~~G~iDiLVNNAG~~  101 (273)
T PRK08278         80 AVAKTVERFGGIDICVNNASAI  101 (273)
T ss_pred             HHHHHHHHHCCCCEEEECCCCC
T ss_conf             9999999859962999878666


No 334
>TIGR00303 TIGR00303 conserved hypothetical protein TIGR00303; InterPro: IPR002805   Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin . It is one of the enzymes of the anaerobic pathway of cobalamin biosynthesis, and one of the four proteins (CobU, CobT, CobC, and CobS) involved in the synthesis of the lower ligand and the assembly of the nucleotide loop , .    Vitamin B_12 (cobalamin) is used as a cofactor in a number of enzyme-catalysed reactions in bacteria, archaea and eukaryotes . The biosynthetic pathway to adenosylcobalamin from its five-carbon precursor, 5-aminolaevulinic acid, can be divided into three sections: (1) the biosynthesis of uroporphyrinogen III from 5-aminolaevulinic acid; (2) the conversion of uroporphyrinogen III into the ring-contracted, deacylated intermediate precorrin 6 or cobalt-precorrin 6; and (3) the transformation of this intermediate to form adenosylcobalamin . Cobalamin is synthesised by bacteria and archaea via two alternative routes that differ primarily in the steps of section 2 that lead to the contraction of the macrocycle and excision of the extruded carbon molecule (and its attached methyl group) . One pathway (exemplified by Pseudomonas denitrificans) incorporates molecular oxygen into the macrocycle as a prerequisite to ring contraction, and has consequently been termed the aerobic pathway. The alternative, anaerobic, route (exemplified by Salmonella typhimurium) takes advantage of a chelated cobalt ion, in the absence of oxygen, to set the stage for ring contraction .   This entry represents a group of proteins predicted to have nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity..
Probab=23.31  E-value=63  Score=14.48  Aligned_cols=73  Identities=25%  Similarity=0.357  Sum_probs=39.9

Q ss_pred             HHHHHHHCCCCEEEEEEEHH-CCHHHH-HHHHHHH-------------------HHCCCEEEEEEECCCCCCHHHHHHH-
Q ss_conf             99999980998265453010-387999-9889876-------------------5359829999726766851134652-
Q gi|254780157|r   23 AADMLDTLGIDYEARIISAH-RTPDRL-IEFAKNA-------------------RFEGFKLIIAGAGGAAHLPGMIAAM-   80 (165)
Q Consensus        23 a~~~L~~~gI~~~~~V~SAH-R~p~~l-~~~~~~~-------------------~~~~~~viIa~AG~aaaLpgvva~~-   80 (165)
                      |.-.|.-+|++-+-+|-|-| .+|+++ .+.++.-                   +.-|..++.++||++      +++. 
T Consensus       161 AlGVL~aLG~dA~g~VsSS~p~nph~lK~~vV~~gL~~AG~e~~~s~~~~~~vl~AVGDpm~~~VAG~A------~~~~e  234 (350)
T TIGR00303       161 ALGVLLALGYDAEGKVSSSMPHNPHELKRKVVREGLKKAGIEKKESSLDPFEVLEAVGDPMMPVVAGIA------IGSSE  234 (350)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHH------HHHCC
T ss_conf             999998737375850437888872889999999988756876678873579999716893138776156------42102


Q ss_pred             CCCCEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             24203661257766675001699840
Q gi|254780157|r   81 TSLPVLGVPIISQTLGGIDSLLSIVQ  106 (165)
Q Consensus        81 t~~PVIgVP~~~~~~~G~dallS~vq  106 (165)
                      -..|||   .-+|  -.|-|++..+|
T Consensus       235 ~~~PV~---LAGG--TQM~Av~ali~  255 (350)
T TIGR00303       235 RSKPVI---LAGG--TQMLAVLALIK  255 (350)
T ss_pred             CCCCEE---ECCC--HHHHHHHHHHH
T ss_conf             588717---6475--78999999998


No 335
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=23.29  E-value=63  Score=14.48  Aligned_cols=103  Identities=17%  Similarity=0.262  Sum_probs=55.0

Q ss_pred             EEEHHCCHHHHHHHHHHHHH-CCCEEEEEEECCCCCCHHHHHHHC-----CCCEEEECCCCCCCCCCCCHHHHHH--CCC
Q ss_conf             53010387999988987653-598299997267668511346522-----4203661257766675001699840--356
Q gi|254780157|r   38 IISAHRTPDRLIEFAKNARF-EGFKLIIAGAGGAAHLPGMIAAMT-----SLPVLGVPIISQTLGGIDSLLSIVQ--MPA  109 (165)
Q Consensus        38 V~SAHR~p~~l~~~~~~~~~-~~~~viIa~AG~aaaLpgvva~~t-----~~PVIgVP~~~~~~~G~dallS~vq--MP~  109 (165)
                      +.-.|.+.  ..|+.+...+ ..++.+++..|.-+.+.|+..++-     ..|+|||-+.+.     +.+...++  .|-
T Consensus       136 ~i~G~~T~--~~Ei~eQl~~~~~~d~vv~~~G~Gg~l~G~~~~l~~~~~~~i~iigVep~g~-----~~~~~s~~~g~~~  208 (316)
T cd06448         136 IWEGHSSM--VDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGA-----HSLNASLKAGKLV  208 (316)
T ss_pred             HHHHHHHH--HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC-----HHHHHHHHCCCEE
T ss_conf             78787789--9999998534899709997678368899999999983799886786457787-----5899999878854


Q ss_pred             CC-CCEEEECCCCCCH--HHHHHHHHH-----HHCCCHHHHHHHHH
Q ss_conf             98-6204431675312--289999999-----70699999999999
Q gi|254780157|r  110 GV-PVGTMAIGQSGAI--NASLLAVAI-----LALDDKELTDRLNE  147 (165)
Q Consensus       110 Gv-pvatv~vg~~~~~--NAal~A~~I-----l~~~d~~i~~kl~~  147 (165)
                      -+ +.-|.+.+.+.++  +..+-..+-     +..+|+++.+..+.
T Consensus       209 ~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~Vtd~ei~~a~~~  254 (316)
T cd06448         209 TLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLR  254 (316)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHH
T ss_conf             1699883887626998449999999863986999899999999999


No 336
>pfam09752 DUF2048 Uncharacterized conserved protein (DUF2048). The proteins in this family are conserved from plants to vertebrates. The function is unknown.
Probab=23.24  E-value=63  Score=14.47  Aligned_cols=113  Identities=21%  Similarity=0.202  Sum_probs=68.2

Q ss_pred             CEEEEEECCCCCHHHHHH---HHHHHHHCCCCEEEE-------------EEEHHCC-----------HHHHHHHHHHHHH
Q ss_conf             749999588169899999---999999809982654-------------5301038-----------7999988987653
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKY---AADMLDTLGIDYEAR-------------IISAHRT-----------PDRLIEFAKNARF   57 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~---a~~~L~~~gI~~~~~-------------V~SAHR~-----------p~~l~~~~~~~~~   57 (165)
                      ..|+|-+.++-|.-+-..   +...|++ ||...+-             ..|.-|+           ..+...+..-.+.
T Consensus        91 ~~vcihLagTGD~~f~rR~~~a~pLlk~-gi~siile~pyYG~RkP~~Q~~~~l~~VsDl~~mg~~~i~E~~~Ll~w~~~  169 (337)
T pfam09752        91 RPVCVHLAGTGDHGFWRRRRLARPLLKE-GIGSIILENPFYGLRRPKGQRRSSLRNVSDLFLMGAATILESRALLHWLER  169 (337)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8549984786751178898877889864-840688615644466984311252211879999777899999999999997


Q ss_pred             CCC-EEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             598-2999972676685113465224203661257766675001699840356986204431675312289999999
Q gi|254780157|r   58 EGF-KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAI  133 (165)
Q Consensus        58 ~~~-~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~I  133 (165)
                      +|+ .+-+++--|-+|++..++++-.+|+--||+.+.+-              -.||-|-++ ...+.|-..+.-|+
T Consensus       170 ~g~g~~g~tG~SmGG~mAalaas~~p~Pia~vPclswsS--------------As~vfteGv-Ls~~i~W~~L~~q~  231 (337)
T pfam09752       170 EGYGPLGVTGLSMGGHMAALAASNWPKPLAVVPCLAWSS--------------ASSVFTEGV-LSHSIAWDALEKQI  231 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCC--------------CCHHHHHHH-CCCCCCHHHHHCHH
T ss_conf             288861366423312777766405898731202204677--------------730431102-03666778872422


No 337
>PRK05876 short chain dehydrogenase; Provisional
Probab=23.21  E-value=63  Score=14.47  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=38.2

Q ss_pred             CCCEEEEEECCCCC----------------------HHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--C
Q ss_conf             88749999588169----------------------89999999999980998265453010387999988987653--5
Q gi|254780157|r    3 IAPPVAIIMGSQSD----------------------WKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--E   58 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD----------------------~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~   58 (165)
                      .+-||++|.|+.|-                      .+-.+++.+.|+..|.+... +..=-+.++.+.+..++...  .
T Consensus         4 ~~gKvavITGaasGIG~a~A~~la~~Ga~Vvi~d~~~~~l~~~~~~l~~~g~~~~~-~~~Dvt~~~~v~~l~~~~~~~~G   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHG-VMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHHHHHC
T ss_conf             89987999282669999999999987998999979889999999999826984799-97888999999999999999848


Q ss_pred             CCEEEEEEECCCCC
Q ss_conf             98299997267668
Q gi|254780157|r   59 GFKLIIAGAGGAAH   72 (165)
Q Consensus        59 ~~~viIa~AG~aaa   72 (165)
                      .++++|.-||....
T Consensus        83 ~iDilvnNAGi~~~   96 (275)
T PRK05876         83 HVDVVFSNAGIVVG   96 (275)
T ss_pred             CCCEEECCCCCCCC
T ss_conf             98851215744689


No 338
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.15  E-value=64  Score=14.46  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=43.9

Q ss_pred             CEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEEEHHC--CHHH-HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH
Q ss_conf             749999588169--899999999999809982654530103--8799-99889876535982999972676685113465
Q gi|254780157|r    5 PPVAIIMGSQSD--WKIMKYAADMLDTLGIDYEARIISAHR--TPDR-LIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA   79 (165)
Q Consensus         5 pkV~Ii~GS~SD--~~~~~~a~~~L~~~gI~~~~~V~SAHR--~p~~-l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~   79 (165)
                      ++|+|+.-...+  ....++....|++-|+++-+.--+++-  .++. ..++.+-  .+.++++|+ -|+.+.+-.+.-.
T Consensus         6 k~IgIi~k~~~~~a~~~~~~l~~~L~~~g~~v~ld~~~a~~l~~~~~~~~~~~~~--~~~~Dlvi~-lGGDGT~L~aar~   82 (292)
T PRK03378          6 KCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEI--GQQADLAVV-VGGDGNMLGAART   82 (292)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHH--CCCCCEEEE-ECCCHHHHHHHHH
T ss_conf             8999995279858999999999999978998998347876529986554786685--305689999-7778899999998


Q ss_pred             H--CCCCEEEECC
Q ss_conf             2--2420366125
Q gi|254780157|r   80 M--TSLPVLGVPI   90 (165)
Q Consensus        80 ~--t~~PVIgVP~   90 (165)
                      .  ...|++|+=.
T Consensus        83 ~~~~~~PilGIN~   95 (292)
T PRK03378         83 LARYDIKVIGINR   95 (292)
T ss_pred             HCCCCCCEEEEEC
T ss_conf             5436996898837


No 339
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=23.08  E-value=64  Score=14.45  Aligned_cols=66  Identities=14%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH
Q ss_conf             749999588169899999999999809982654530103879999889876535982999972676685113
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGM   76 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgv   76 (165)
                      ....-++|. +|.++++++.+.-+++|....+.-.+ |.+.++..+.    +.-|++.++---|......|.
T Consensus        81 AD~vTVlg~-A~~~TI~~~~~~a~~~g~~v~vDli~-~~~~~~ak~~----~~lgv~~v~~H~g~D~q~~g~  146 (220)
T PRK13305         81 ANWMTIICA-APLATVEKGHAVAQSCGGEIQIELFG-NWTLDDARDW----HRIGVRQAIYHRGRDAQASGQ  146 (220)
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHH----HHCCCCEEEEEECCCHHHCCC
T ss_conf             988999566-89799999999999809989998458-9987899999----986998899983336765189


No 340
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.83  E-value=65  Score=14.42  Aligned_cols=50  Identities=22%  Similarity=0.230  Sum_probs=24.6

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             874999958816989999999999980998265453010387999988987653598299997
Q gi|254780157|r    4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG   66 (165)
Q Consensus         4 ~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~   66 (165)
                      .|++.++.++..     ++..+.++..|+.+-..|.|.        +..+.+++.+.+.+|+-
T Consensus        80 ~v~~v~~~~g~p-----~~~v~~l~~~g~~v~~~v~s~--------~~A~~a~~~GaD~iv~q  129 (236)
T cd04730          80 GVPVVSFSFGPP-----AEVVERLKAAGIKVIPTVTSV--------EEARKAEAAGADALVAQ  129 (236)
T ss_pred             CCCEEEECCCCC-----HHHHHHHHHCCCEEEEECCCH--------HHHHHHHHCCCCEEEEE
T ss_conf             999999879897-----899999998299899958989--------99999998189989997


No 341
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far.  Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=22.83  E-value=65  Score=14.42  Aligned_cols=18  Identities=17%  Similarity=0.362  Sum_probs=9.5

Q ss_pred             EEHHCCHHHHHHHHHHHH
Q ss_conf             301038799998898765
Q gi|254780157|r   39 ISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus        39 ~SAHR~p~~l~~~~~~~~   56 (165)
                      ..-|.+...+.+.++...
T Consensus        56 l~~~~~~~~l~~~I~~i~   73 (165)
T cd01481          56 LNTHSTKADVLGAVRRLR   73 (165)
T ss_pred             CCCCCCHHHHHHHHHHHH
T ss_conf             677689999999998410


No 342
>TIGR00600 rad2 DNA excision repair protein (rad2); InterPro: IPR001044   Xeroderma pigmentosum (XP)  is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region .   XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved.   This entry represents XPGC, an acidic protein that confers normal UV resistance in expressing cells, can correct XP-G. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms. XPGC cleaves one strand of the duplex at the border with the single-stranded region , .; GO: 0003697 single-stranded DNA binding, 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=22.79  E-value=56  Score=14.80  Aligned_cols=18  Identities=22%  Similarity=0.484  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHCCCCEEE
Q ss_conf             999999999980998265
Q gi|254780157|r   19 IMKYAADMLDTLGIDYEA   36 (165)
Q Consensus        19 ~~~~a~~~L~~~gI~~~~   36 (165)
                      ...|+.+.|..|||||.+
T Consensus       859 M~~E~QELL~lFGiPYI~  876 (1127)
T TIGR00600       859 MILESQELLRLFGIPYIV  876 (1127)
T ss_pred             HHHHHHHHHHHCCCCCCC
T ss_conf             989989999856887334


No 343
>PRK07806 short chain dehydrogenase; Provisional
Probab=22.77  E-value=65  Score=14.41  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=16.0

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             9887499995881698999999999998099
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGI   32 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI   32 (165)
                      +.+-||++|.|+.|  -+...++..|.+-|-
T Consensus         3 ~L~gKvalVTGas~--GIG~aiA~~la~~Ga   31 (248)
T PRK07806          3 DLPGKIALVTGSSR--GIGAEVAKYLAGAGA   31 (248)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCC
T ss_conf             98998899937885--999999999998799


No 344
>TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250   The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota..
Probab=22.58  E-value=62  Score=14.56  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             99999999980998265453010387999988987653598299997267
Q gi|254780157|r   20 MKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG   69 (165)
Q Consensus        20 ~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~   69 (165)
                      ..=..++|.++||+..+-|.||-|-      |++     .+|+++++|.-
T Consensus       156 G~LT~K~L~~~GI~VTLIVDSAVRY------FI~-----E~D~VVVGAD~  194 (303)
T TIGR00511       156 GYLTVKTLRDAGIDVTLIVDSAVRY------FIK-----EVDIVVVGADA  194 (303)
T ss_pred             CHHHHHHHHHCCCEEEEEEECHHEE------EEE-----EEEEEEECCCC
T ss_conf             0254667866594489985010100------112-----56589987850


No 345
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=22.31  E-value=66  Score=14.36  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHH
Q ss_conf             6989999999999980998265453010387999988
Q gi|254780157|r   15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEF   51 (165)
Q Consensus        15 SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~   51 (165)
                      .--|++..+...|..-|++||++-......|+++.++
T Consensus         7 ~~CPya~R~rlaL~~k~i~~e~~~vdL~~kp~~~l~~   43 (71)
T cd03060           7 RRCPYAMRARMALLLAGITVELREVELKNKPAEMLAA   43 (71)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf             8993799999999986997799983676798999955


No 346
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase; InterPro: IPR013375   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Many archaeal species lack cysteinyl-tRNA synthetase, an essential enzyme that provides Cys-tRNA(Cys) in other organisms. Instead, in a two step pathway, tRNA-Cys is acylated with O-phosphoserine (Sep) to form Sep-tRNA(Cys), which is subsequently converted to Cys-tRNA(Cys) . This pathway is also thought to function as the sole route of cysteine biosynthesis in these organisms. Several other archaeal species use both this pathway and direct tRNA(Cys) aminoacylation to synthesize Cys-tRNA(Cys), but this pathway appears to be the only route for cysteine biosynthesis. Proteins in this entry catalyse the second step in this pathway using pyridoxal phosphate and a sulphur donor to synthesize Cys from Sep while attached to the tRNA..
Probab=22.27  E-value=66  Score=14.35  Aligned_cols=129  Identities=18%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             CCEEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEEEE-EEHHCCHHHHHHHHHHHHHCCCEE-EEEEEC---CCCCC-H
Q ss_conf             87499995---881698999999999998099826545-301038799998898765359829-999726---76685-1
Q gi|254780157|r    4 APPVAIIM---GSQSDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKL-IIAGAG---GAAHL-P   74 (165)
Q Consensus         4 ~pkV~Ii~---GS~SD~~~~~~a~~~L~~~gI~~~~~V-~SAHR~p~~l~~~~~~~~~~~~~v-iIa~AG---~aaaL-p   74 (165)
                      .|.-+++.   |+.-.++=+++.+++.++.|||.-++- -+-=|.|--.         +.+++ ||++.|   |||.= -
T Consensus       148 ~~~LallThvDG~YGNL~DA~kva~vc~~~gvPlLLNCAY~vGRmPv~~---------ke~~~DFiVGSGHKSMAASaP~  218 (381)
T TIGR02539       148 PVALALLTHVDGEYGNLADAKKVAKVCREKGVPLLLNCAYTVGRMPVSA---------KEIKADFIVGSGHKSMAASAPC  218 (381)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEECCCC---------CCCCCCEEEECCCCHHHHCCCE
T ss_conf             8348998402688675112456876654207862212450521003157---------7778767780685132212660


Q ss_pred             HHHHHHCCCCEEEECCC--CCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             13465224203661257--7666750016998403569862044316753122899999997069999999999999999
Q gi|254780157|r   75 GMIAAMTSLPVLGVPII--SQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNEWRTQQ  152 (165)
Q Consensus        75 gvva~~t~~PVIgVP~~--~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d~~i~~kl~~~r~~~  152 (165)
                      ||++-.-.+-=+=.=.|  -|...|...=-==+.|. ||.+          .+|-  -+.++| +-|.+.+|++.|.+|.
T Consensus       219 GvLa~~eE~~~~v~r~SslrGdvsG~~~~~KEvElL-GCT~----------rGap--~~TlmA-SfP~VveRV~~Wd~Ev  284 (381)
T TIGR02539       219 GVLAMSEEWEDKVLRKSSLRGDVSGRKFPVKEVELL-GCTS----------RGAP--IVTLMA-SFPHVVERVKRWDEEV  284 (381)
T ss_pred             EECCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEEC-CCCC----------CHHH--HHHHHH-CCCHHHHHCCCHHHHH
T ss_conf             021454222340110232100336634474127744-8632----------4047--999973-2810112202315667


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780157|r  153 TIS  155 (165)
Q Consensus       153 ~~~  155 (165)
                      +++
T Consensus       285 ~kt  287 (381)
T TIGR02539       285 KKT  287 (381)
T ss_pred             HHH
T ss_conf             776


No 347
>PRK04759 consensus
Probab=22.25  E-value=66  Score=14.35  Aligned_cols=86  Identities=21%  Similarity=0.202  Sum_probs=39.7

Q ss_pred             CCCCC-EEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEEE--EEH-HCCHHH-HHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             99887-49999588169---8999999999998099826545--301-038799-9988987653598299997267668
Q gi|254780157|r    1 MNIAP-PVAIIMGSQSD---WKIMKYAADMLDTLGIDYEARI--ISA-HRTPDR-LIEFAKNARFEGFKLIIAGAGGAAH   72 (165)
Q Consensus         1 m~~~p-kV~Ii~GS~SD---~~~~~~a~~~L~~~gI~~~~~V--~SA-HR~p~~-l~~~~~~~~~~~~~viIa~AG~aaa   72 (165)
                      |.... +|+|+. -..|   ...+++..+.|++.|+++-+.-  ... ...|.. .... .+. .+.++++|+. |+.+.
T Consensus         1 M~~~f~~I~Iv~-k~~~~~~~~~~~~l~~~L~~~g~~v~vd~~~~~~l~~~~~~~~~~~-~~l-~~~~Dlvi~l-GGDGT   76 (294)
T PRK04759          1 MKKPFNVIAIIG-KPRDQQAIQTHKELYHWLTSLGYTVFIDDRLAAILTDVPQEHFASL-VEL-GKKADLAIVV-GGDGN   76 (294)
T ss_pred             CCCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCH-HHC-CCCCCEEEEE-CCCHH
T ss_conf             999997999994-1799799999999999998689999991688655334772223775-563-7665689998-47858


Q ss_pred             CHHHHH--HHCCCCEEEECC
Q ss_conf             511346--522420366125
Q gi|254780157|r   73 LPGMIA--AMTSLPVLGVPI   90 (165)
Q Consensus        73 Lpgvva--~~t~~PVIgVP~   90 (165)
                      +-.+.-  .....|++|+=.
T Consensus        77 lL~aar~~~~~~~PilgiN~   96 (294)
T PRK04759         77 MLGAARVLSRFDISVIGVNR   96 (294)
T ss_pred             HHHHHHHHCCCCCCEEEEEC
T ss_conf             99999986016996898845


No 348
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=22.11  E-value=67  Score=14.33  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             999988987653598299997267668
Q gi|254780157|r   46 DRLIEFAKNARFEGFKLIIAGAGGAAH   72 (165)
Q Consensus        46 ~~l~~~~~~~~~~~~~viIa~AG~aaa   72 (165)
                      +++.+++++   ....|+.++||+|+.
T Consensus        10 ~~l~~~l~~---s~~ivvlTGAGiSte   33 (285)
T PRK05333         10 DALQDFVER---HPRLFVLTGAGISTD   33 (285)
T ss_pred             HHHHHHHHH---CCCEEEEECCEEEHH
T ss_conf             999999972---997899929730052


No 349
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.93  E-value=67  Score=14.31  Aligned_cols=71  Identities=14%  Similarity=0.025  Sum_probs=40.3

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE----------------------------------EEHHCCHH
Q ss_conf             99887499995881698999999999998099826545----------------------------------30103879
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARI----------------------------------ISAHRTPD   46 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V----------------------------------~SAHR~p~   46 (165)
                      |+++-||++|.|+..---+...++..|-+.|...-+..                                  ..--..++
T Consensus         1 m~L~gKvalVTGasr~~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~   80 (257)
T PRK12748          1 LPLMKKIAIVTGASRLNGIGAAICRVLAQKGIDIFFTYWSQYDKAMPWGMHDKEPFLLKEEIESYGVRCEMLEIDLSQSY   80 (257)
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf             99999889992889998549999999998799999970752554434234606799999999965982899984689999


Q ss_pred             HHHHHHHHHHH--CCCEEEEEEECCCC
Q ss_conf             99988987653--59829999726766
Q gi|254780157|r   47 RLIEFAKNARF--EGFKLIIAGAGGAA   71 (165)
Q Consensus        47 ~l~~~~~~~~~--~~~~viIa~AG~aa   71 (165)
                      ...+.++...+  ..++++|-.||...
T Consensus        81 ~~~~~~~~~~~~~G~iDiLVnnAg~~~  107 (257)
T PRK12748         81 SPNRLFYMVSERLGDPSILINNAAYST  107 (257)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             999999999997499989998998899


No 350
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.90  E-value=67  Score=14.30  Aligned_cols=127  Identities=14%  Similarity=0.095  Sum_probs=70.0

Q ss_pred             EEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             99995881698999---999999998099826545301038799998898765359829999726766851134652242
Q gi|254780157|r    7 VAIIMGSQSDWKIM---KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSL   83 (165)
Q Consensus         7 V~Ii~GS~SD~~~~---~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~   83 (165)
                      |+++..+-+|--+.   +.+.+.+++.|  |.+-+++.+..+++-.++++.+..++++-+|...... ...-.--.....
T Consensus         2 IGvivpdi~npf~~~i~~gi~~~~~~~g--y~~ll~~t~~~~~~e~~~l~~l~~~~vdGiI~~~~~~-~~~~~~~~~~~~   78 (263)
T cd06280           2 VGLIVADIRNPFFTAVSRAVEDAAYRAG--LRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTRA-TLRRLAELRLSF   78 (263)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHCCCC
T ss_conf             8999888877899999999999999869--9899997899989999999999816987999878878-767999970899


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCC-----------HHHHHHHHHHHHH
Q ss_conf             036612577666750016998403569862044316753122899999997-0699-----------9999999999999
Q gi|254780157|r   84 PVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAIL-ALDD-----------KELTDRLNEWRTQ  151 (165)
Q Consensus        84 PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il-~~~d-----------~~i~~kl~~~r~~  151 (165)
                      |++-+-....              ..++|  +|  ..|+ +.++..+++-| ...+           ..-.+|+.-|++.
T Consensus        79 P~V~idr~~~--------------~~~~~--~V--~~Dn-~~~~~~a~~~L~~~Ghr~I~~l~g~~~~~~~~R~~Gf~~a  139 (263)
T cd06280          79 PVVLIDRAGP--------------AGRVD--AV--VLDN-RAAARTLVEHLVAQGYRRIGGLFGNASTTGAERRAGYEDA  139 (263)
T ss_pred             CEEEECCCCC--------------CCCCC--EE--EECH-HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             6899925688--------------89998--89--9888-9999999999986089669999389984399999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780157|r  152 QTIS  155 (165)
Q Consensus       152 ~~~~  155 (165)
                      +++.
T Consensus       140 l~~~  143 (263)
T cd06280         140 MRRH  143 (263)
T ss_pred             HHHC
T ss_conf             9976


No 351
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=21.87  E-value=67  Score=14.30  Aligned_cols=46  Identities=26%  Similarity=0.457  Sum_probs=30.2

Q ss_pred             CCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             203661257766675001699840356986204431675312289999999
Q gi|254780157|r   83 LPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAI  133 (165)
Q Consensus        83 ~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~I  133 (165)
                      --|||+|+.  -.+-..|-....+...|+|--|+ .|.-||-  .+.|+-+
T Consensus       155 alVIG~PVG--FVgA~ESKe~L~~~~~~vP~It~-~GrkGGS--~vAaAiv  200 (208)
T PRK08285        155 AAILGFPVG--FVGAAESKAALAADSRGVPYVIV-RGRRGGS--AMAAAAV  200 (208)
T ss_pred             CEEEECCCC--CCCCHHHHHHHHHCCCCCCEEEE-CCCCCCH--HHHHHHH
T ss_conf             668876865--56729999999847899997986-1798769--9999999


No 352
>cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class II, prokaryotic enzyme is a homodimer. Class II enzymes are found primarily in prokaryotes and Archaeoglobus fulgidus and are soluble as they lack the membrane region. Enzymes catalyze the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR differ in their active site architecture.
Probab=21.67  E-value=41  Score=15.71  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=26.3

Q ss_pred             CHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-HHHH
Q ss_conf             169984035698620443167531228999999970699-9999
Q gi|254780157|r  100 SLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDD-KELT  142 (165)
Q Consensus       100 allS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~~d-~~i~  142 (165)
                      .|.-.+.||  .+|+||+=+. .-.-.+-.+.+||+..+ .+++
T Consensus       305 ~L~gsitlP--l~vGtVGG~t-~~~P~~~~~l~iLgv~~A~~La  345 (417)
T cd00644         305 KLVGELELP--LAVGTVGGST-KVHPLAKLALKILGVPSAKELA  345 (417)
T ss_pred             EEEEEEEEE--EEEEEECCCC-CCCHHHHHHHHHHCCCCHHHHH
T ss_conf             799999986--0446762667-7586489999971899899999


No 353
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.34  E-value=69  Score=14.23  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=41.6

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHC-CCE-EEEEEECCCCCCHH
Q ss_conf             749999588169899999999999809982654530103879999889876535-982-99997267668511
Q gi|254780157|r    5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFE-GFK-LIIAGAGGAAHLPG   75 (165)
Q Consensus         5 pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~-~~~-viIa~AG~aaaLpg   75 (165)
                      .+|++|.--+--..-.+....+-+.+|+|.++-     ++|+.+.+.+..++++ +++ ++|--||++---.-
T Consensus       270 KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV-----~dp~eL~~AL~~lkdka~~DLILIDTAGRS~RD~~  337 (436)
T PRK11889        270 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-----RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASE  337 (436)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE-----CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
T ss_conf             808999806634769999999999849943996-----88899999999876336888899929898846899


No 354
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=21.34  E-value=69  Score=14.23  Aligned_cols=72  Identities=21%  Similarity=0.374  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHCCCCE-EEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH--------HHHHHHCCCCEEE
Q ss_conf             899999999999809982-6545301038799998898765359829999726766851--------1346522420366
Q gi|254780157|r   17 WKIMKYAADMLDTLGIDY-EARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP--------GMIAAMTSLPVLG   87 (165)
Q Consensus        17 ~~~~~~a~~~L~~~gI~~-~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLp--------gvva~~t~~PVIg   87 (165)
                      ....+++.+.++..|++. +..+....-..+.+.++..+   .+.++++.++.+...|.        .-+..+++.||+=
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~---~~adliV~G~~g~~~l~~~llGsv~~~v~~~~~~pVlv  149 (154)
T COG0589          73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEE---EDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLV  149 (154)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH---CCCCEEEECCCCCCCCCCCEECCHHHHHHHHCCCCEEE
T ss_conf             999999999999759971378984388738999999997---09999999998998653334163999999859999999


Q ss_pred             ECCC
Q ss_conf             1257
Q gi|254780157|r   88 VPII   91 (165)
Q Consensus        88 VP~~   91 (165)
                      ||..
T Consensus       150 v~~~  153 (154)
T COG0589         150 VRSE  153 (154)
T ss_pred             EECC
T ss_conf             8289


No 355
>PRK10329 glutaredoxin-like protein; Provisional
Probab=21.33  E-value=69  Score=14.23  Aligned_cols=44  Identities=14%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHH
Q ss_conf             99588169899999999999809982654530103879999889876
Q gi|254780157|r    9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNA   55 (165)
Q Consensus         9 Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~   55 (165)
                      |..=|+.+=+.++-....|++.||+|+..-++-  .|+.+ ++++..
T Consensus         3 ITVYTkp~C~qC~aTKr~L~~~gI~y~~vdi~~--dpea~-~~vk~~   46 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDR--VPEAA-DTLRAQ   46 (81)
T ss_pred             EEEECCCCCCCHHHHHHHHHHCCCCEEEEECCC--CHHHH-HHHHHC
T ss_conf             999769998247989999998799429985899--99999-999976


No 356
>PRK12744 short chain dehydrogenase; Provisional
Probab=20.90  E-value=71  Score=14.17  Aligned_cols=67  Identities=16%  Similarity=0.158  Sum_probs=36.2

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC----------------------------EEEEEEEHHCCHHHHHHHHH
Q ss_conf             98874999958816989999999999980998----------------------------26545301038799998898
Q gi|254780157|r    2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGID----------------------------YEARIISAHRTPDRLIEFAK   53 (165)
Q Consensus         2 ~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~----------------------------~~~~V~SAHR~p~~l~~~~~   53 (165)
                      +++-||++|.|+.+  -+...+++.|.+.|-.                            ... +..=-+.++.+.++.+
T Consensus         5 ~L~gKvalVTGgs~--GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~Dv~~~~~v~~~~~   81 (257)
T PRK12744          5 SLKGKVVLIAGGAK--NLGGLIARDLAAQGAKAVAIHYNSAATKADAEETVAAVKAAGAKAVA-FQADLTTAAAVEKLFD   81 (257)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHH
T ss_conf             98999899928875--89999999999879989999378743689999999999973992899-9768899999999999


Q ss_pred             HHHH--CCCEEEEEEECCCC
Q ss_conf             7653--59829999726766
Q gi|254780157|r   54 NARF--EGFKLIIAGAGGAA   71 (165)
Q Consensus        54 ~~~~--~~~~viIa~AG~aa   71 (165)
                      +..+  ..++++|..||...
T Consensus        82 ~~~~~~G~iDilVnnAG~~~  101 (257)
T PRK12744         82 DAKAAFGRPDIAINTVGKVL  101 (257)
T ss_pred             HHHHHCCCCCEEEECCCCCC
T ss_conf             99998099889997664456


No 357
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.78  E-value=71  Score=14.16  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             8874999958816989999999999980998
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGID   33 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~   33 (165)
                      ++-|+++|.|..|..-+...+++.|.+.|..
T Consensus         5 L~GK~alITGaa~~~GIG~aiA~~La~~GA~   35 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAE   35 (271)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             7999799979999854999999999986999


No 358
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.71  E-value=71  Score=14.15  Aligned_cols=78  Identities=13%  Similarity=0.124  Sum_probs=46.9

Q ss_pred             EEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--HC
Q ss_conf             999958816989---9999999999809982654530103879999889876535982999972676685113465--22
Q gi|254780157|r    7 VAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--MT   81 (165)
Q Consensus         7 V~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--~t   81 (165)
                      |+|++.+-+|.-   +++.+...+++.|  |.+-+++..-.+++-.++++....++++-+|.....  .-+..+..  ..
T Consensus         2 IGvivp~l~npf~~~l~~gie~~~~~~g--y~~li~~s~~~~~~e~~~i~~l~~~~vDGiI~~~~~--~~~~~~~~l~~~   77 (268)
T cd06298           2 VGVIIPDITNSYFAELARGIDDIATMYK--YNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK--ISEEHREEFKRS   77 (268)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHC
T ss_conf             8999789879899999999999999879--989999899998999999999996699999982677--999999999966


Q ss_pred             CCCEEEE
Q ss_conf             4203661
Q gi|254780157|r   82 SLPVLGV   88 (165)
Q Consensus        82 ~~PVIgV   88 (165)
                      ..||+-+
T Consensus        78 ~~PvV~i   84 (268)
T cd06298          78 PTPVVLA   84 (268)
T ss_pred             CCCEEEE
T ss_conf             9989995


No 359
>TIGR02181 GRX_bact glutaredoxin 3; InterPro: IPR011900   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulphides .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=20.56  E-value=72  Score=14.13  Aligned_cols=52  Identities=12%  Similarity=0.155  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC-CEEEEEEEHHCCH-HHHHHHHHHHH-HCC-CEEEEE
Q ss_conf             881698999999999998099-8265453010387-99998898765-359-829999
Q gi|254780157|r   12 GSQSDWKIMKYAADMLDTLGI-DYEARIISAHRTP-DRLIEFAKNAR-FEG-FKLIIA   65 (165)
Q Consensus        12 GS~SD~~~~~~a~~~L~~~gI-~~~~~V~SAHR~p-~~l~~~~~~~~-~~~-~~viIa   65 (165)
                      =+...=|+...|...|++-|| .|+.--++.  .| ....+.++... .+- +++||.
T Consensus         4 YT~~~CPYC~rAK~LL~~kGv~~~~Ei~vd~--dpD~~r~eM~~Rs~Gr~TVPQIFIg   59 (82)
T TIGR02181         4 YTKPYCPYCSRAKALLESKGVGTFTEIRVDG--DPDALRDEMMQRSGGRRTVPQIFIG   59 (82)
T ss_pred             ECCCCCCCCHHHHHHHHHCCCCCCEEEECCC--CCCHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             3159988026889999856988630344579--8106889999982899404337629


No 360
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function.  The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX.  The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation.  Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=20.46  E-value=72  Score=14.11  Aligned_cols=41  Identities=15%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCE
Q ss_conf             99999999809982654530103879999889876535982
Q gi|254780157|r   21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK   61 (165)
Q Consensus        21 ~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~   61 (165)
                      ++....|++.||+|++.---+.+|-++..++......+..+
T Consensus         2 ~rl~~~L~~~~I~y~~~~H~~~~t~~eaa~~~g~~~~~~~K   42 (153)
T cd04336           2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAK   42 (153)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEE
T ss_conf             78999999879976999879999899999875999672566


No 361
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=20.41  E-value=72  Score=14.11  Aligned_cols=56  Identities=20%  Similarity=0.224  Sum_probs=34.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             499995881698999999999998099826545301038799998898765359829999726
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG   68 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG   68 (165)
                      ++.+|..|.+|....+++.      +-.+.+.+.+-|..+....+.++....+ ..|||+.-+
T Consensus         1 ~~liIVEg~~d~~~i~~~~------~~~~~~~~~~G~~~~~~~i~~l~~~~~~-~eViiatD~   56 (76)
T smart00493        1 KVLIIVEGPADAIALEKAG------GFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDP   56 (76)
T ss_pred             CEEEEECCHHHHHHHHHHC------CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEECCC
T ss_conf             9799987888999999856------9997999821523504489999986338-979997698


No 362
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=20.35  E-value=72  Score=14.10  Aligned_cols=54  Identities=13%  Similarity=0.071  Sum_probs=26.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHH--CCCEEEEEEECCC
Q ss_conf             989999999999980998265453010387999988987653--5982999972676
Q gi|254780157|r   16 DWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARF--EGFKLIIAGAGGA   70 (165)
Q Consensus        16 D~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~--~~~~viIa~AG~a   70 (165)
                      |..-.++....+++.|-.+... ..=-..++.+.++.+...+  ..++++|.-||..
T Consensus        40 ~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~~~~~G~iD~lVnNAG~~   95 (252)
T PRK06947         40 DAAAAEETADAVRAAGGRACVV-AGDVANEADVIAMFDAVQAAFGRLDALVNNAGIV   95 (252)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             8789999999999649928999-8479999999999999999849988999876435


No 363
>KOG1478 consensus
Probab=20.10  E-value=73  Score=14.06  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=34.6

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHH
Q ss_conf             887499995881698999999999998099826545301038799998898765
Q gi|254780157|r    3 IAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNAR   56 (165)
Q Consensus         3 ~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~   56 (165)
                      |.-||++|.|+.|.+-.. -|...|+.-+-+....++-+-|+..+.++.+....
T Consensus         1 ~~RKvalITGanSglGl~-i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk   53 (341)
T KOG1478           1 MMRKVALITGANSGLGLA-ICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALK   53 (341)
T ss_pred             CCCEEEEEECCCCCCCHH-HHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHH
T ss_conf             972389994488864399-99999751577616999997177267999999999


No 364
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=20.10  E-value=73  Score=14.06  Aligned_cols=49  Identities=22%  Similarity=0.439  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEE-EEEHHCCHHHHHHHHHHHHHCCCE-EEEEE-ECCC
Q ss_conf             9899999999999809982654-530103879999889876535982-99997-2676
Q gi|254780157|r   16 DWKIMKYAADMLDTLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFK-LIIAG-AGGA   70 (165)
Q Consensus        16 D~~~~~~a~~~L~~~gI~~~~~-V~SAHR~p~~l~~~~~~~~~~~~~-viIa~-AG~a   70 (165)
                      |..+.+.=.+.|+++||++-+. +.+=.=|+++|+   ++|   |.| |||+. ||+-
T Consensus       191 pKei~~~E~k~LkklGv~fr~~~lvGkt~TL~eL~---~~Y---GfDAVFIgtGAG~p  242 (462)
T TIGR01316       191 PKEIVETEVKKLKKLGVKFRTDYLVGKTVTLEELL---EKY---GFDAVFIGTGAGLP  242 (462)
T ss_pred             CHHHHHHHHHHHHHCCEEEEECCEECCCHHHHHHH---HHC---CCCEEEEEECCCCC
T ss_conf             75788988887632663799443750511288888---751---97079995068987


No 365
>pfam02350 Epimerase_2 UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyses the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in this instance Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase is the kinase domain.
Probab=20.03  E-value=74  Score=14.05  Aligned_cols=80  Identities=24%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCC---CEEEEEEEH---HCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH
Q ss_conf             499995881698999999999998099---826545301---03879999889876535982999972676685113465
Q gi|254780157|r    6 PVAIIMGSQSDWKIMKYAADMLDTLGI---DYEARIISA---HRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA   79 (165)
Q Consensus         6 kV~Ii~GS~SD~~~~~~a~~~L~~~gI---~~~~~V~SA---HR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~   79 (165)
                      ...|..|+.=|..+.+...   +.|+|   ++.+..-+.   .-...-+.++.+......++.++....+-.+|++++++
T Consensus        11 ~~li~TG~H~~~~~g~t~~---e~f~i~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~PD~vlv~GDr~e~la~aiaa   87 (346)
T pfam02350        11 LQLVVTGQHLDREMGDTFF---EGFGIPKPDYDLNVDSQSLAKSTGRILIGLEDVLEEEKPDLVLVLGDTNETLAGALAA   87 (346)
T ss_pred             EEEEECCCCCCHHHHHHHH---HHCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf             7999828889987867998---6569999974458999989999999999999999982999999968971588999999


Q ss_pred             H-CCCCEEEE
Q ss_conf             2-24203661
Q gi|254780157|r   80 M-TSLPVLGV   88 (165)
Q Consensus        80 ~-t~~PVIgV   88 (165)
                      . ...||+=+
T Consensus        88 ~~~~ipi~Hi   97 (346)
T pfam02350        88 FYLRIPVAHV   97 (346)
T ss_pred             HHHCCCEEEE
T ss_conf             9819848995


Done!