RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole
carboxylase catalytic subunit protein [Candidatus Liberibacter
asiaticus str. psy62]
(165 letters)
>gnl|CDD|130230 TIGR01162, purE, phosphoribosylaminoimidazole carboxylase, PurE
protein. Phosphoribosylaminoimidazole carboxylase is a
fusion protein in plants and fungi, but consists of two
non-interacting proteins in bacteria, PurK and PurE.
This model represents PurK, an N5-CAIR mutase.
Length = 156
Score = 215 bits (550), Expect = 4e-57
Identities = 91/157 (57%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66
V IIMGS SD MK AAD+L+ GI YE R++SAHRTP+ ++E+AK A G K+IIAG
Sbjct: 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAG 60
Query: 67 AGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINA 126
AGGAAHLPGM+AA+T LPV+GVP+ S+ L G+DSLLSIVQMP+GVPV T+AIG +G NA
Sbjct: 61 AGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAG--NA 118
Query: 127 SLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
+LLA IL + D EL ++L E+R Q + + K +
Sbjct: 119 ALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKL 155
>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.
Length = 577
Score = 209 bits (534), Expect = 3e-55
Identities = 83/145 (57%), Positives = 107/145 (73%), Gaps = 2/145 (1%)
Query: 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63
P V IIMGS SD MK AA++LD+ G+ YE I+SAHRTP+R+ +A++A G ++I
Sbjct: 410 TPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVI 469
Query: 64 IAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA 123
IAGAGGAAHLPGM+A+MT LPV+GVP+ + L G+DSLLSIVQMP GVPV T+AIG A
Sbjct: 470 IAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGN--A 527
Query: 124 INASLLAVAILALDDKELTDRLNEW 148
NA LLAV +L D +L D++ +
Sbjct: 528 TNAGLLAVRMLGASDPDLLDKMEAY 552
>gnl|CDD|179386 PRK02227, PRK02227, hypothetical protein; Provisional.
Length = 238
Score = 32.2 bits (74), Expect = 0.060
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 11 MGSQSDWKIMKYAAD------MLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
+GS S + AAD MLDT D + + H + L EF AR G +
Sbjct: 128 VGSVSPLSLPAIAADAGFDGAMLDTAIKD--GKSLFDHMDEEELAEFVAEARSHGLMSAL 185
Query: 65 AGAGGAAHLPG 75
AG+ +P
Sbjct: 186 AGSLKFEDIPA 196
>gnl|CDD|178242 PLN02635, PLN02635, disproportionating enzyme.
Length = 538
Score = 30.1 bits (68), Expect = 0.30
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 99 DSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAI--LALDDKELTDRLNEWRTQQTIS 155
D LL ++P VPVG + + L+A A L L D EL + L ++R IS
Sbjct: 107 DGLLEEDELPEPVPVGKVDFSAVAELKDPLIAKAAERLLLSDGELKEELEDFRKDPEIS 165
>gnl|CDD|161922 TIGR00549, mevalon_kin, mevalonate kinase. Paracoccus exhibits two
genes within the phosphomevalonate/mevalonate kinase
family, one of which falls between trusted and noise
cutoffs of this model. The degree of divergence is high,
but if the trees created from this model are correct,
the proper names of these genes have been swapped.
Length = 273
Score = 30.0 bits (68), Expect = 0.36
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMI 77
++M +L LG+ +H D+L+E A+ A G KL AG GG MI
Sbjct: 225 ELMNINQGLLKALGV--------SHPKLDQLVETARKAGALGAKLTGAGGGGC-----MI 271
Query: 78 A 78
A
Sbjct: 272 A 272
>gnl|CDD|183856 PRK13055, PRK13055, putative lipid kinase; Reviewed.
Length = 334
Score = 29.6 bits (67), Expect = 0.47
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 18 KIMKYAADMLDTL-GIDYEARIISAHRT---PDRLIEFAKNARFEGFKLIIAGAGG 69
+ K AD+LD L YE SA +T P+ AK A GF LIIA AGG
Sbjct: 17 IMKKNVADILDILEQAGYET---SAFQTTPEPNSAKNEAKRAAEAGFDLIIA-AGG 68
>gnl|CDD|184615 PRK14315, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 29.5 bits (67), Expect = 0.47
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 37 RIISAHRTPDRLIEFAK-----NARFEGFKLIIAGAGGAAH 72
RI AH R IEFAK + R +G ++++ A GAA+
Sbjct: 152 RIDDAH---GRYIEFAKRTLPRDLRLDGLRVVVDCANGAAY 189
>gnl|CDD|184102 PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional.
Length = 469
Score = 28.4 bits (64), Expect = 0.88
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 15 SDWKIMKYAADMLDTLGIDY 34
D++I+K A D+ D LGI+Y
Sbjct: 279 EDFEILKAAKDLNDFLGINY 298
>gnl|CDD|179412 PRK02308, uvsE, putative UV damage endonuclease; Provisional.
Length = 315
Score = 28.0 bits (63), Expect = 1.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 18 KIMKYAADMLDTLGIDYEARI 38
K ++Y A +LD +GID ++I
Sbjct: 130 KDLEYHAKLLDLMGIDDSSKI 150
>gnl|CDD|181021 PRK07534, PRK07534, methionine synthase I; Validated.
Length = 336
Score = 27.8 bits (62), Expect = 1.3
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 39 ISAHRTPDRLIEFAKNARFEGFKLIIAGAGGA--AHLPGMIAAMTSLPVLGVPI---ISQ 93
I TP+ + E+A AR G + II G G HL M AA+ + P P I +
Sbjct: 251 IHYDGTPELMAEYAVLARDAGAR-IIGGCCGTMPEHLAAMRAALDARPRGPRPSLETIVE 309
Query: 94 TLGGIDS 100
LG S
Sbjct: 310 RLGPFSS 316
>gnl|CDD|178820 PRK00046, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 334
Score = 27.4 bits (62), Expect = 1.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 29 TLGIDYEAR-IISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68
T GID AR ++ A + ++L+E +AR G +++ G G
Sbjct: 14 TFGIDARARHLVEAE-SEEQLLEALADARAAGLPVLVLGGG 53
>gnl|CDD|161876 TIGR00433, bioB, biotin synthetase. Catalyzes the last step of the
biotin biosynthesis pathway.
Length = 296
Score = 27.0 bits (60), Expect = 2.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 34 YEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAH----LPGMIAAMTSLPVLGVP 89
+ + IIS H DR+ +NA+ G K+ G G G+ A+ +LP VP
Sbjct: 147 FYSNIISTHTYDDRVDTL-ENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPESVP 205
Query: 90 I 90
I
Sbjct: 206 I 206
>gnl|CDD|147831 pfam05893, LuxC, Acyl-CoA reductase (LuxC). This family consists
of several bacterial Acyl-CoA reductase (LuxC) proteins.
The channelling of fatty acids into the fatty aldehyde
substrate for the bacterial bioluminescence reaction is
catalysed by a fatty acid reductase multienzyme complex,
which channels fatty acids through the thioesterase
(LuxD), synthetase (LuxE) and reductase (LuxC)
components.
Length = 400
Score = 26.9 bits (60), Expect = 2.3
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 137 DDKELTDRLNEWRTQQTISISEYPKDIP 164
D ++ + RT QT+ ++ + +
Sbjct: 332 DIFDVVRYVTPNRTLQTVGLAPWESRLK 359
>gnl|CDD|177291 PHA00684, PHA00684, hypothetical protein.
Length = 128
Score = 26.7 bits (59), Expect = 3.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 46 DRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80
+R I +A F++ G G A HL IA M
Sbjct: 63 NRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPM 97
>gnl|CDD|180468 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 26.1 bits (58), Expect = 4.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 109 AGVPVGTMAIGQSGAINASLLAVAILALDDKELTDRLNE 147
AGV M IG A LA A L LDD +L + LNE
Sbjct: 289 AGVEPSRMGIGPVPATEK-ALARAGLTLDDIDLIE-LNE 325
>gnl|CDD|185096 PRK15174, PRK15174, Vi polysaccharide export protein VexE;
Provisional.
Length = 656
Score = 25.9 bits (56), Expect = 4.9
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 14 QSDWKIMKYAADMLDTLGIDY-EARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG---G 69
+ +W+ + D +D+ E R A RL + + +F +L + G
Sbjct: 426 RDEWERRAKWGYLADNFLLDWLECRGEQADEPMYRLADISHVEQFFQ-RLQLDQRGCIIV 484
Query: 70 AAHLPGMIAAMTSLPVLGVP 89
+AHL M A L +L +
Sbjct: 485 SAHLGAMYAGPMILSLLEMN 504
>gnl|CDD|185331 PRK15433, PRK15433, branched-chain amino acid transport system 2
carrier protein BrnQ; Provisional.
Length = 439
Score = 26.1 bits (57), Expect = 5.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 75 GMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTM 116
G + LPVL V +++ GG+DSL + + AGV + T+
Sbjct: 47 GFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATV 88
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional.
Length = 1490
Score = 26.0 bits (57), Expect = 5.4
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 75 GMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPV 113
G++ A P L G+D ++ +++ AGV +
Sbjct: 1065 GVLPATDGSPALFASTSPGVYEGVDGVMRVIEQLAGVGL 1103
>gnl|CDD|132150 TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family. This
model describes a subfamily of MEROPS peptidase family
M42, a glutamyl aminopeptidase family that also
includes the cellulase CelM from Clostridium
thermocellum and deblocking aminopeptidases that can
remove acylated amino acids. Members of this family
occur in a three gene cassette with an amidotransferase
(TIGR03104)in the asparagine synthase
(glutamine-hydrolyzing) family, and a probable
acetyltransferase (TIGR03103) in the GNAT family.
Length = 343
Score = 25.5 bits (56), Expect = 6.8
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 18 KIMKYAADMLDTLGIDYE--------ARIISAHRTPDRLI 49
+++Y A+ L+ LGI+YE A + TP R +
Sbjct: 24 AVVRYVAERLEDLGIEYELTRRGAIRATLPGREATPARAV 63
>gnl|CDD|183786 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 25.5 bits (56), Expect = 7.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 45 PDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVL 86
L +A F+ +I+ GAG A + AA+ L VL
Sbjct: 5 VSELSPERWDAEFD---VIVIGAGAAGMSAALFAAIAGLKVL 43
>gnl|CDD|115546 pfam06896, DUF1268, Protein of unknown function (DUF1268). This
family consists of several bacterial and phage proteins
of around 115 residues in length. The function of this
family is unknown.
Length = 114
Score = 25.2 bits (55), Expect = 8.1
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 132 AILALDDKELTDRLNEWRTQQTISISEY 159
AIL L+ KE D+L + Q+T+ +
Sbjct: 64 AILNLNKKE-YDKLEDLENQETMEVVSK 90
>gnl|CDD|169701 PRK09189, PRK09189, uroporphyrinogen-III synthase; Validated.
Length = 240
Score = 25.4 bits (56), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 52 AKNARFEGFKLIIAGAGGAAHLPGMIAA 79
A+ AR GF+ +I G G L +AA
Sbjct: 86 AEAARELGFRHVIEGGGDGVRLAETVAA 113
>gnl|CDD|148297 pfam06605, DUF1142, Protein of unknown function (DUF1142). This
family consists of hypothetical bacterial and viral
proteins of unknown function.
Length = 318
Score = 25.3 bits (56), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 28 DTLGIDYEARIISAHRTP 45
+ LGID E RI+S R P
Sbjct: 269 EPLGIDTEVRIVSITRYP 286
>gnl|CDD|162965 TIGR02665, molyb_mobA, molybdopterin-guanine dinucleotide
biosynthesis protein A, proteobacterial. In many
molybdopterin-containing enzymes, including nitrate
reductase and dimethylsulfoxide reductase, the cofactor
is molybdopterin-guanine dinucleotide. The family
described here contains MobA, molybdopterin-guanine
dinucleotide biosynthesis protein A, from the
Proteobacteria only. MobA can reconstitute
molybdopterin-guanine dinucleotide biosynthesis without
the product of the neighboring gene MobB. The probable
MobA proteins of other lineages differ sufficiently
that they are not included in scope of this family.
Length = 186
Score = 25.3 bits (56), Expect = 8.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 38 IISAHRTPDRLIEFAKNARFEGFKLII---AGAGGAAHLPGMIAAM 80
ISA+R P+R GF L + A A L G++A +
Sbjct: 45 AISANRNPER-------YAQAGFGLPVVPDALADFPGPLAGILAGL 83
>gnl|CDD|181303 PRK08224, ligC, ATP-dependent DNA ligase; Reviewed.
Length = 350
Score = 25.2 bits (56), Expect = 9.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 126 ASLLAVAILALDDKELTDR 144
AS +A +LAL D++LT R
Sbjct: 114 ASFVAFDLLALGDRDLTGR 132
>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed.
Length = 500
Score = 25.1 bits (55), Expect = 9.9
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 15 SDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLP 74
+W I Y + L I + A P RL+ F + F L AGA A +
Sbjct: 382 VNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF----LTTAGA---ALIA 434
Query: 75 GMIAAMTSLP 84
G +A + ++P
Sbjct: 435 GYVANLMAVP 444
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,791,686
Number of extensions: 180295
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 62
Length of query: 165
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,136,185
Effective search space: 326758615
Effective search space used: 326758615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)