RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole
carboxylase catalytic subunit protein [Candidatus Liberibacter
asiaticus str. psy62]
(165 letters)
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MSE; 1.75A {Francisella tularensis
subsp}
Length = 166
Score = 196 bits (499), Expect = 2e-51
Identities = 91/156 (58%), Positives = 114/156 (73%)
Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
V +IMGS+SDW MK D+LD LGI YE ++SAHRTPD++ ++A+ A+ G K+II
Sbjct: 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVII 65
Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124
AGAGGAAHLPGM+AA T+LPVLGVP+ S TL G DSLLSIVQMPAG+PV T AIG +GA
Sbjct: 66 AGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAK 125
Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYP 160
NA+L A +IL D + L E+R +QT + E P
Sbjct: 126 NAALFAASILQHTDINIAKALAEFRAEQTRFVLENP 161
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 190 bits (485), Expect = 9e-50
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60
V ++MGS SD + GI E R+ SAH+ PD + +G
Sbjct: 262 SESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGI 321
Query: 61 -KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIG 119
+ +A AG + L +++ T+ PV+ P ++ G+ + S +++P+G+ T+
Sbjct: 322 PTVFVAVAGRSNGLGPVMSGNTAYPVISCPPLT-PDWGVQDVWSSLRLPSGLGCSTVLSP 380
Query: 120 QSGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
+ ++ A I L + + +L IS+ + K I
Sbjct: 381 E----GSAQFAAQIFGLSNHLVWSKLRASILNTWISLKQADKKI 420
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural
genomics, JCSG, PSI, protein structure initiative; 1.77A
{Thermotoga maritima} SCOP: c.23.8.1
Length = 183
Score = 184 bits (469), Expect = 8e-48
Identities = 85/159 (53%), Positives = 114/159 (71%), Gaps = 2/159 (1%)
Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
P V IIMGS SD +MK AA++L+ GIDYE I+SAHRTPDR+ E+AKNA G ++II
Sbjct: 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73
Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124
AGAGGAAHLPGM+A++T LPV+GVP+ + TL G+DSL SIVQMP GVPV T+AI A
Sbjct: 74 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAIN--NAK 131
Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
NA +LA +IL + E+ ++ E++ + + E + +
Sbjct: 132 NAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRL 170
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 184 bits (468), Expect = 8e-48
Identities = 79/159 (49%), Positives = 106/159 (66%), Gaps = 2/159 (1%)
Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
P V +IMGS SDW +M AA L I E R++SAHRTP+ + +A+ A G ++II
Sbjct: 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67
Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124
AGAGGAAHLPGM+AA T LPV+GVP+ L G+DSLLSIVQMPAGVPV T++IG GA
Sbjct: 68 AGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIG--GAG 125
Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
NA LLAV +L + +L R+ ++ + ++ ++
Sbjct: 126 NAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAEL 164
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE;
3-layer (ABA) sandwich, rossmann fold, csgid, lyase,
structural genomics; 1.41A {Yersinia pestis} PDB:
1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Length = 174
Score = 178 bits (454), Expect = 4e-46
Identities = 91/161 (56%), Positives = 114/161 (70%)
Query: 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60
+AI+MGS+SDW M++AAD+L TL + + ++SAHRTPDRL FA+ A G
Sbjct: 9 YAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGL 68
Query: 61 KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ 120
+IIAG GGAAHLPGM+AA T +PVLGVP+ S L G+DSL SIVQMP G+PVGT+AIG+
Sbjct: 69 HVIIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGK 128
Query: 121 SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPK 161
+GA NA+LLA ILAL D EL RL WR QT + + P
Sbjct: 129 AGAANAALLAAQILALHDTELAGRLAHWRQSQTDDVLDNPD 169
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide mutase); acidophIle,
protein stability, lyase; HET: CIT; 1.55A {Acetobacter
aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A
2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Length = 182
Score = 173 bits (440), Expect = 2e-44
Identities = 98/159 (61%), Positives = 116/159 (72%)
Query: 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63
AP V IIMGSQSDW+ M++A +L L I +E I+SAHRTPDRL ++A+ A G +I
Sbjct: 21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 80
Query: 64 IAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA 123
IAGAGGAAHLPGM AA T LPVLGVP+ S+ L G+DSLLSIVQMP GVPVGT+AIG SGA
Sbjct: 81 IAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGA 140
Query: 124 INASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKD 162
NA+LLA +ILAL + L RL WR QT S+ P
Sbjct: 141 KNAALLAASILALYNPALAARLETWRALQTASVPNSPIT 179
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine
biosynthesis, spine, lyase; 1.80A {Bacillus anthracis}
SCOP: c.23.8.1
Length = 170
Score = 162 bits (412), Expect = 3e-41
Identities = 88/157 (56%), Positives = 112/157 (71%)
Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
V +IMGS SDW+ MKYA D+LD L I YE +++SAHRTPD + E+A+ AR G K+II
Sbjct: 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 71
Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124
AGAGGAAHLPGM+AA T+LPV+GVP+ S+ L G+DSLLSIVQMP GVPV T+AIG++G+
Sbjct: 72 AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 131
Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPK 161
NA LLA IL ++ D L R + E +
Sbjct: 132 NAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSE 168
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit;
rossmann fold, structural genomics, NPPSFA; 2.31A
{Methanocaldococcus jannaschii}
Length = 157
Score = 153 bits (389), Expect = 1e-38
Identities = 66/157 (42%), Positives = 102/157 (64%), Gaps = 6/157 (3%)
Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66
+ IIMGS+SD KI + A ++L G+++E R+ SAHRTP+ + E KN+ + IA
Sbjct: 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNS---KADVFIAI 58
Query: 67 AGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINA 126
AG AAHLPG++A++T+ PV+ VP+ + L G+D+LLS VQMP G+PV T+ I NA
Sbjct: 59 AGLAAHLPGVVASLTTKPVIAVPVDA-KLDGLDALLSSVQMPPGIPVATVGID--RGENA 115
Query: 127 SLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
++LA+ ILAL D+ + +L E+R + + + +
Sbjct: 116 AILALEILALKDENIAKKLIEYREKMKKKVYASDEKV 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 42.6 bits (100), Expect = 5e-05
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 20/161 (12%)
Query: 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK---LIIA 65
I+ G KI K + + E ++SA + + + A FE K LI A
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 66 GAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIV-----QMPAGVPVGTMAIGQ 120
A A H G AA+ SL ++S I+SL+ +V M VP +
Sbjct: 1756 DATFAGHSLGEYAALASL----ADVMS-----IESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 121 SG--AINASLLAVAILALDDKELTDRLNEWRTQQTISISEY 159
G AIN +A + + + +R+ + RT + I Y
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGK-RTGWLVEIVNY 1846
Score = 37.6 bits (87), Expect = 0.001
Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 66/174 (37%)
Query: 19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG--- 75
++K++A+ L L RT + +G I+ ++ P
Sbjct: 187 LIKFSAETLSEL-----------IRTTLDAEKV----FTQGLN-ILEWLENPSNTPDKDY 230
Query: 76 MIAAMTSLPVLGVPIISQTLGGIDSLLSIVQ-------MPAGVPVGTM------AIGQSG 122
+++ S P++G ++ + + G G + A G S
Sbjct: 231 LLSIPISCPLIG-------------VIQLAHYVVTAKLL--GFTPGELRSYLKGATGHSQ 275
Query: 123 AINASLLAVAILALDDKELTDRLNE----------WRTQQTISISEYPK-DIPA 165
+ + AVAI D E R + YP +P
Sbjct: 276 GL---VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-----YPNTSLPP 321
Score = 34.5 bits (79), Expect = 0.012
Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 57/145 (39%)
Query: 31 GIDYEARI---------------ISA--HRTP------DRLIE--FAKNARFEGFKLIIA 65
G+D ++RI +++ H + D + + N F + I
Sbjct: 401 GLD-QSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 66 ------G----AGGAAHLPGMIAAMTSLPV-----LGVP---IISQTLG-----GIDSLL 102
G + ++ + LPV I+ G G+ L
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--DFGPGGASGLGVLT 516
Query: 103 SIVQMPAGVPVGTMAIGQSGAINAS 127
+ G G I +G ++ +
Sbjct: 517 H--RNKDG--TGVRVI-VAGTLDIN 536
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase;
peptidoglycan synthesis, cell WALL, cell division,
oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia
coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A*
2q85_A* 2mbr_A*
Length = 340
Score = 30.9 bits (69), Expect = 0.12
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 29 TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68
T GID+ A+ I +L+ + A EG ++I G G
Sbjct: 8 TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEG 47
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism;
HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP:
e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Length = 370
Score = 30.9 bits (69), Expect = 0.15
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66
+I + L I E + S + + + A AR ++I
Sbjct: 34 TVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGV 93
Query: 67 AGGAAH-LPGMIAAMTSLPVLGVPIISQT 94
GG +A ++ VP + T
Sbjct: 94 GGGKTLDTAKAVADELDAYIVIVPTAAST 122
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase,
structural genomics, center for structural genomics of
infectious diseases, csgid; HET: FAD; 2.20A {Vibrio
cholerae}
Length = 357
Score = 29.8 bits (66), Expect = 0.29
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 29 TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68
T GI+ A + + D L +A + +I G G
Sbjct: 24 TFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKG 63
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
hyperthermophIle, PGI family; 1.16A {Pyrobaculum
aerophilum str} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A*
1x9i_A*
Length = 302
Score = 25.6 bits (55), Expect = 6.4
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 26 MLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF-KLIIAGAGGAAHLPGMIAAMTSLP 84
+L +++E I+ P + + R E +L I+G GG+ + +I +
Sbjct: 4 LLQDY-LNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADLIRDFSLTW 62
Query: 85 VLGVPIIS 92
V +I+
Sbjct: 63 NWEVEVIA 70
>2v6o_A Thioredoxin glutathione reductase; FAD, flavoprotein,
oxidoreductase, chimeric enzyme, thiol-mediated
detoxification pathway; HET: FAD PG4; 2.20A {Schistosoma
mansoni} PDB: 3h4k_A*
Length = 596
Score = 25.2 bits (54), Expect = 7.2
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 37 RIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGV-------P 89
+ + + + D L ++++ + LI+ G G G AA +
Sbjct: 86 QTVLKYYSNDELAGIVNESKYD-YDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPI 144
Query: 90 IISQTLGG 97
+ LGG
Sbjct: 145 GTTWGLGG 152
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A
{Burkholderia pseudomallei} PDB: 2x3y_A
Length = 198
Score = 25.4 bits (55), Expect = 7.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 46 DRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA 79
++ + + +G K+++AG GG+A IA
Sbjct: 35 RKVADACIASIAQGGKVLLAGNGGSAADAQHIAG 68
>1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 25.1 bits (54), Expect = 7.3
Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 1/66 (1%)
Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66
++ D L G+ + + ++ + + ++II
Sbjct: 94 AVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEAS-LVELDKLRKQCPDDTQVIIGV 152
Query: 67 AGGAAH 72
GG
Sbjct: 153 GGGKTM 158
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate- methylating enzyme,
oxidoreductase; HET: NAD FAD FMN; 1.85A
{Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B*
1vrq_B*
Length = 405
Score = 25.3 bits (54), Expect = 7.4
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 41 AHRTPDRLIEFAKNARFEGFKLII-AGAGGAAH 72
A+ P L + RFE LI GA AH
Sbjct: 373 ANDEPHELNKPFSLERFETGHLIDEHGAAAVAH 405
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison,;
1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A
1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 25.0 bits (54), Expect = 8.7
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 45 PDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPII--SQTLGGIDSL 101
D + +A ++G ++ AG G + + + G ++ S+ G +
Sbjct: 224 SDLPAKALVDAGYDG--IVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQ 280
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,379,485
Number of extensions: 61198
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 42
Length of query: 165
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 80
Effective length of database: 3,632,490
Effective search space: 290599200
Effective search space used: 290599200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)