RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein [Candidatus Liberibacter asiaticus str. psy62] (165 letters) >3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} Length = 166 Score = 196 bits (499), Expect = 2e-51 Identities = 91/156 (58%), Positives = 114/156 (73%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64 V +IMGS+SDW MK D+LD LGI YE ++SAHRTPD++ ++A+ A+ G K+II Sbjct: 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVII 65 Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 AGAGGAAHLPGM+AA T+LPVLGVP+ S TL G DSLLSIVQMPAG+PV T AIG +GA Sbjct: 66 AGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAK 125 Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYP 160 NA+L A +IL D + L E+R +QT + E P Sbjct: 126 NAALFAASILQHTDINIAKALAEFRAEQTRFVLENP 161 >2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Length = 425 Score = 190 bits (485), Expect = 9e-50 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 6/164 (3%) Query: 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60 V ++MGS SD + GI E R+ SAH+ PD + +G Sbjct: 262 SESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGI 321 Query: 61 -KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIG 119 + +A AG + L +++ T+ PV+ P ++ G+ + S +++P+G+ T+ Sbjct: 322 PTVFVAVAGRSNGLGPVMSGNTAYPVISCPPLT-PDWGVQDVWSSLRLPSGLGCSTVLSP 380 Query: 120 QSGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 + ++ A I L + + +L IS+ + K I Sbjct: 381 E----GSAQFAAQIFGLSNHLVWSKLRASILNTWISLKQADKKI 420 >1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Length = 183 Score = 184 bits (469), Expect = 8e-48 Identities = 85/159 (53%), Positives = 114/159 (71%), Gaps = 2/159 (1%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64 P V IIMGS SD +MK AA++L+ GIDYE I+SAHRTPDR+ E+AKNA G ++II Sbjct: 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73 Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 AGAGGAAHLPGM+A++T LPV+GVP+ + TL G+DSL SIVQMP GVPV T+AI A Sbjct: 74 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAIN--NAK 131 Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 NA +LA +IL + E+ ++ E++ + + E + + Sbjct: 132 NAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRL 170 >3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} Length = 174 Score = 184 bits (468), Expect = 8e-48 Identities = 79/159 (49%), Positives = 106/159 (66%), Gaps = 2/159 (1%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64 P V +IMGS SDW +M AA L I E R++SAHRTP+ + +A+ A G ++II Sbjct: 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67 Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 AGAGGAAHLPGM+AA T LPV+GVP+ L G+DSLLSIVQMPAGVPV T++IG GA Sbjct: 68 AGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIG--GAG 125 Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 NA LLAV +L + +L R+ ++ + ++ ++ Sbjct: 126 NAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAEL 164 >3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Length = 174 Score = 178 bits (454), Expect = 4e-46 Identities = 91/161 (56%), Positives = 114/161 (70%) Query: 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60 +AI+MGS+SDW M++AAD+L TL + + ++SAHRTPDRL FA+ A G Sbjct: 9 YAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGL 68 Query: 61 KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ 120 +IIAG GGAAHLPGM+AA T +PVLGVP+ S L G+DSL SIVQMP G+PVGT+AIG+ Sbjct: 69 HVIIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGK 128 Query: 121 SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPK 161 +GA NA+LLA ILAL D EL RL WR QT + + P Sbjct: 129 AGAANAALLAAQILALHDTELAGRLAHWRQSQTDDVLDNPD 169 >1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide mutase); acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Length = 182 Score = 173 bits (440), Expect = 2e-44 Identities = 98/159 (61%), Positives = 116/159 (72%) Query: 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63 AP V IIMGSQSDW+ M++A +L L I +E I+SAHRTPDRL ++A+ A G +I Sbjct: 21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 80 Query: 64 IAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA 123 IAGAGGAAHLPGM AA T LPVLGVP+ S+ L G+DSLLSIVQMP GVPVGT+AIG SGA Sbjct: 81 IAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGA 140 Query: 124 INASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKD 162 NA+LLA +ILAL + L RL WR QT S+ P Sbjct: 141 KNAALLAASILALYNPALAARLETWRALQTASVPNSPIT 179 >1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Length = 170 Score = 162 bits (412), Expect = 3e-41 Identities = 88/157 (56%), Positives = 112/157 (71%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64 V +IMGS SDW+ MKYA D+LD L I YE +++SAHRTPD + E+A+ AR G K+II Sbjct: 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 71 Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 AGAGGAAHLPGM+AA T+LPV+GVP+ S+ L G+DSLLSIVQMP GVPV T+AIG++G+ Sbjct: 72 AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 131 Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPK 161 NA LLA IL ++ D L R + E + Sbjct: 132 NAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSE 168 >2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Length = 157 Score = 153 bits (389), Expect = 1e-38 Identities = 66/157 (42%), Positives = 102/157 (64%), Gaps = 6/157 (3%) Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66 + IIMGS+SD KI + A ++L G+++E R+ SAHRTP+ + E KN+ + IA Sbjct: 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNS---KADVFIAI 58 Query: 67 AGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINA 126 AG AAHLPG++A++T+ PV+ VP+ + L G+D+LLS VQMP G+PV T+ I NA Sbjct: 59 AGLAAHLPGVVASLTTKPVIAVPVDA-KLDGLDALLSSVQMPPGIPVATVGID--RGENA 115 Query: 127 SLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 ++LA+ ILAL D+ + +L E+R + + + + Sbjct: 116 AILALEILALKDENIAKKLIEYREKMKKKVYASDEKV 152 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 42.6 bits (100), Expect = 5e-05 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 20/161 (12%) Query: 9 IIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK---LIIA 65 I+ G KI K + + E ++SA + + + A FE K LI A Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755 Query: 66 GAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIV-----QMPAGVPVGTMAIGQ 120 A A H G AA+ SL ++S I+SL+ +V M VP + Sbjct: 1756 DATFAGHSLGEYAALASL----ADVMS-----IESLVEVVFYRGMTMQVAVPRDELGRSN 1806 Query: 121 SG--AINASLLAVAILALDDKELTDRLNEWRTQQTISISEY 159 G AIN +A + + + +R+ + RT + I Y Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGK-RTGWLVEIVNY 1846 Score = 37.6 bits (87), Expect = 0.001 Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 66/174 (37%) Query: 19 IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPG--- 75 ++K++A+ L L RT + +G I+ ++ P Sbjct: 187 LIKFSAETLSEL-----------IRTTLDAEKV----FTQGLN-ILEWLENPSNTPDKDY 230 Query: 76 MIAAMTSLPVLGVPIISQTLGGIDSLLSIVQ-------MPAGVPVGTM------AIGQSG 122 +++ S P++G ++ + + G G + A G S Sbjct: 231 LLSIPISCPLIG-------------VIQLAHYVVTAKLL--GFTPGELRSYLKGATGHSQ 275 Query: 123 AINASLLAVAILALDDKELTDRLNE----------WRTQQTISISEYPK-DIPA 165 + + AVAI D E R + YP +P Sbjct: 276 GL---VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-----YPNTSLPP 321 Score = 34.5 bits (79), Expect = 0.012 Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 57/145 (39%) Query: 31 GIDYEARI---------------ISA--HRTP------DRLIE--FAKNARFEGFKLIIA 65 G+D ++RI +++ H + D + + N F + I Sbjct: 401 GLD-QSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIP 458 Query: 66 ------G----AGGAAHLPGMIAAMTSLPV-----LGVP---IISQTLG-----GIDSLL 102 G + ++ + LPV I+ G G+ L Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--DFGPGGASGLGVLT 516 Query: 103 SIVQMPAGVPVGTMAIGQSGAINAS 127 + G G I +G ++ + Sbjct: 517 H--RNKDG--TGVRVI-VAGTLDIN 536 >1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Length = 340 Score = 30.9 bits (69), Expect = 0.12 Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 29 TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68 T GID+ A+ I +L+ + A EG ++I G G Sbjct: 8 TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEG 47 >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Length = 370 Score = 30.9 bits (69), Expect = 0.15 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 1/89 (1%) Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66 +I + L I E + S + + + A AR ++I Sbjct: 34 TVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGV 93 Query: 67 AGGAAH-LPGMIAAMTSLPVLGVPIISQT 94 GG +A ++ VP + T Sbjct: 94 GGGKTLDTAKAVADELDAYIVIVPTAAST 122 >3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Length = 357 Score = 29.8 bits (66), Expect = 0.29 Identities = 10/40 (25%), Positives = 16/40 (40%) Query: 29 TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68 T GI+ A + + D L +A + +I G G Sbjct: 24 TFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKG 63 >1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum str} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A* Length = 302 Score = 25.6 bits (55), Expect = 6.4 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 26 MLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF-KLIIAGAGGAAHLPGMIAAMTSLP 84 +L +++E I+ P + + R E +L I+G GG+ + +I + Sbjct: 4 LLQDY-LNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADLIRDFSLTW 62 Query: 85 VLGVPIIS 92 V +I+ Sbjct: 63 NWEVEVIA 70 >2v6o_A Thioredoxin glutathione reductase; FAD, flavoprotein, oxidoreductase, chimeric enzyme, thiol-mediated detoxification pathway; HET: FAD PG4; 2.20A {Schistosoma mansoni} PDB: 3h4k_A* Length = 596 Score = 25.2 bits (54), Expect = 7.2 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 37 RIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGV-------P 89 + + + + D L ++++ + LI+ G G G AA + Sbjct: 86 QTVLKYYSNDELAGIVNESKYD-YDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPI 144 Query: 90 IISQTLGG 97 + LGG Sbjct: 145 GTTWGLGG 152 >2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A Length = 198 Score = 25.4 bits (55), Expect = 7.3 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 46 DRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA 79 ++ + + +G K+++AG GG+A IA Sbjct: 35 RKVADACIASIAQGGKVLLAGNGGSAADAQHIAG 68 >1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe} Length = 450 Score = 25.1 bits (54), Expect = 7.3 Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 1/66 (1%) Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66 ++ D L G+ + + ++ + + ++II Sbjct: 94 AVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEAS-LVELDKLRKQCPDDTQVIIGV 152 Query: 67 AGGAAH 72 GG Sbjct: 153 GGGKTM 158 >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* Length = 405 Score = 25.3 bits (54), Expect = 7.4 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%) Query: 41 AHRTPDRLIEFAKNARFEGFKLII-AGAGGAAH 72 A+ P L + RFE LI GA AH Sbjct: 373 ANDEPHELNKPFSLERFETGHLIDEHGAAAVAH 405 >1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison,; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A* Length = 326 Score = 25.0 bits (54), Expect = 8.7 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 45 PDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPII--SQTLGGIDSL 101 D + +A ++G ++ AG G + + + G ++ S+ G + Sbjct: 224 SDLPAKALVDAGYDG--IVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQ 280 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.136 0.389 Gapped Lambda K H 0.267 0.0503 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,379,485 Number of extensions: 61198 Number of successful extensions: 323 Number of sequences better than 10.0: 1 Number of HSP's gapped: 313 Number of HSP's successfully gapped: 42 Length of query: 165 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 80 Effective length of database: 3,632,490 Effective search space: 290599200 Effective search space used: 290599200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.7 bits)