HHsearch alignment for GI: 254780158 and conserved domain: COG0458

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=99.93  E-value=5.5e-23  Score=174.64  Aligned_cols=337  Identities=15%  Similarity=0.124  Sum_probs=227.6

Q ss_pred             EEEEECCC-HHHHHHHHHHHHCCCEEEEEECCCCCCHH--HCCCEEEECCCCCHHHHHHHH--HHCCEEEECCCCC-CHH
Q ss_conf             89998098-98999999998879789999676777134--226827987899999999997--4199999877222-113
Q gi|254780158|r    5 TIGIIGGG-QLARMLSMSAARLGFCTVILDPDSNCPAN--QVSNQQIAARHDDIKALNTFA--DICDYATYESENI-PEK   78 (354)
Q Consensus         5 ~IgIlG~G-qL~rml~~aA~~lG~~v~v~d~~~~~pa~--~~ad~~~~~~~~D~~~l~~~~--~~~Dvit~E~E~i-~~~   78 (354)
T Consensus         7 ~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~-~E~v~~Ii~~E~~Dailp~~ggqt~Ln   85 (400)
T COG0458           7 VIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPIT-KEPVEKIIEKERPDAILPTLGGQTALN   85 (400)
T ss_pred             EEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCC-HHHHHHHHHHCCCCEEECCCCCCCHHH
T ss_conf             6676411143678999999866975999728872124780005302662473-788999997537662632468741346


Q ss_pred             HHHHHH------H-CCCCC-CCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             334443------0-20034-876778763152788888765058867432100068888641001312554023467555
Q gi|254780158|r   79 SISYLS------T-LLPTY-PSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGFKGKGILKTRRLGYDG  150 (354)
Q Consensus        79 ~l~~l~------~-~~~v~-P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~~el~~~~~~~g~P~vlKp~~~GydG  150 (354)
T Consensus        86 ~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~-~lGG  163 (400)
T COG0458          86 AALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSF-GLGG  163 (400)
T ss_pred             HHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCC-CCCC
T ss_conf             88998772645644977994587895564209999999998399988-412356777765576369977980685-7888


Q ss_pred             CCCCCCCCHHHHHHHHHHC----CCCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCE---EEEEECCC-C
Q ss_conf             6645446746778987513----55501011114564433201014665413997053345435550---58985278-7
Q gi|254780158|r  151 KGQKVYHENDCTQNLYASL----GNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGIL---HKSIVPAS-I  222 (354)
Q Consensus       151 kG~~~i~~~~~l~~~~~~~----~~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~~~~gil---~~s~~Pa~-i  222 (354)
T Consensus       164 ~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl  243 (400)
T COG0458         164 SGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTL  243 (400)
T ss_pred             CCEEEEECHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCCC
T ss_conf             75168718999999987322447642001244216856999999983799879998678656566444323652145565


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CEEEEEEECCCCCCCEEEEHHHCCCCHHHHH---HHHHHCCCCCC
Q ss_conf             8789999999988677540246775310455388-4089994125704560462100135889999---99981889997
Q gi|254780158|r  223 SQKTSLLAHSAMRKVLETLDYVGILCIEFFVTND-GNVIANEMAPRVHNSGHWTEASCVISQFEQH---IRSITNLPLGN  298 (354)
Q Consensus       223 ~~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~d-g~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h---~rai~glpl~~  298 (354)
T Consensus       244 ~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrss--aLaskAtg-ypia~vaakla~g~~l~E  320 (400)
T COG0458         244 TDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS--ALASKATG-YPIAKVAAKLAVGYTLDE  320 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC--HHHHHCCC-CHHHHHHHHHHCCCCCHH
T ss_conf             437889988877778887411478731489869985599999568767640--31554468-769999997503567065


Q ss_pred             CHHCCCEEEEEEEC-CCCCCHHH--HHCCCCCEEEECCCCCCCCC---CEEEEEEEECCC
Q ss_conf             00048567999755-77022788--97289968997088768979---742599872688
Q gi|254780158|r  299 PNRHSNCVMYNIIG-SDIDQYEQ--WLHCDSSVIHIYGKSQTLCG---RKMGHVTQIYPK  352 (354)
Q Consensus       299 ~~~~~~~~m~nilg-~~~~~~~~--~~~~~~~~~~~YgK~~~r~~---RkmGHvt~~~~~  352 (354)
T Consensus       321 i~--n~i---t~~t~a~fePsldyvv~k~pr~~f~kf~~~~~~l~~~mks~gevm~igr~  375 (400)
T COG0458         321 IR--NDI---TGRTPASFEPSLDYVVTKIPRFDFEKFPGADRRLGTQMKSVGEVMAIGRT  375 (400)
T ss_pred             HC--CCC---CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEECCH
T ss_conf             44--766---44434445776660366347787321345563310023001028996312