HHsearch alignment for GI: 254780158 and conserved domain: COG0458
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=99.93 E-value=5.5e-23 Score=174.64 Aligned_cols=337 Identities=15% Similarity=0.124 Sum_probs=227.6
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCEEEEEECCCCCCHH--HCCCEEEECCCCCHHHHHHHH--HHCCEEEECCCCC-CHH
Q ss_conf 89998098-98999999998879789999676777134--226827987899999999997--4199999877222-113
Q gi|254780158|r 5 TIGIIGGG-QLARMLSMSAARLGFCTVILDPDSNCPAN--QVSNQQIAARHDDIKALNTFA--DICDYATYESENI-PEK 78 (354)
Q Consensus 5 ~IgIlG~G-qL~rml~~aA~~lG~~v~v~d~~~~~pa~--~~ad~~~~~~~~D~~~l~~~~--~~~Dvit~E~E~i-~~~ 78 (354)
T Consensus 7 ~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~-~E~v~~Ii~~E~~Dailp~~ggqt~Ln 85 (400)
T COG0458 7 VIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPIT-KEPVEKIIEKERPDAILPTLGGQTALN 85 (400)
T ss_pred EEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCC-HHHHHHHHHHCCCCEEECCCCCCCHHH
T ss_conf 6676411143678999999866975999728872124780005302662473-788999997537662632468741346
Q ss_pred HHHHHH------H-CCCCC-CCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 334443------0-20034-876778763152788888765058867432100068888641001312554023467555
Q gi|254780158|r 79 SISYLS------T-LLPTY-PSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGFKGKGILKTRRLGYDG 150 (354)
Q Consensus 79 ~l~~l~------~-~~~v~-P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~~el~~~~~~~g~P~vlKp~~~GydG 150 (354)
T Consensus 86 ~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~-~lGG 163 (400)
T COG0458 86 AALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSF-GLGG 163 (400)
T ss_pred HHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCC-CCCC
T ss_conf 88998772645644977994587895564209999999998399988-412356777765576369977980685-7888
Q ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCE---EEEEECCC-C
Q ss_conf 6645446746778987513----55501011114564433201014665413997053345435550---58985278-7
Q gi|254780158|r 151 KGQKVYHENDCTQNLYASL----GNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGIL---HKSIVPAS-I 222 (354)
Q Consensus 151 kG~~~i~~~~~l~~~~~~~----~~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~~~~gil---~~s~~Pa~-i 222 (354)
T Consensus 164 ~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl 243 (400)
T COG0458 164 SGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTL 243 (400)
T ss_pred CCEEEEECHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCCC
T ss_conf 75168718999999987322447642001244216856999999983799879998678656566444323652145565
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CEEEEEEECCCCCCCEEEEHHHCCCCHHHHH---HHHHHCCCCCC
Q ss_conf 8789999999988677540246775310455388-4089994125704560462100135889999---99981889997
Q gi|254780158|r 223 SQKTSLLAHSAMRKVLETLDYVGILCIEFFVTND-GNVIANEMAPRVHNSGHWTEASCVISQFEQH---IRSITNLPLGN 298 (354)
Q Consensus 223 ~~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~d-g~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h---~rai~glpl~~ 298 (354)
T Consensus 244 ~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrss--aLaskAtg-ypia~vaakla~g~~l~E 320 (400)
T COG0458 244 TDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS--ALASKATG-YPIAKVAAKLAVGYTLDE 320 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC--HHHHHCCC-CHHHHHHHHHHCCCCCHH
T ss_conf 437889988877778887411478731489869985599999568767640--31554468-769999997503567065
Q ss_pred CHHCCCEEEEEEEC-CCCCCHHH--HHCCCCCEEEECCCCCCCCC---CEEEEEEEECCC
Q ss_conf 00048567999755-77022788--97289968997088768979---742599872688
Q gi|254780158|r 299 PNRHSNCVMYNIIG-SDIDQYEQ--WLHCDSSVIHIYGKSQTLCG---RKMGHVTQIYPK 352 (354)
Q Consensus 299 ~~~~~~~~m~nilg-~~~~~~~~--~~~~~~~~~~~YgK~~~r~~---RkmGHvt~~~~~ 352 (354)
T Consensus 321 i~--n~i---t~~t~a~fePsldyvv~k~pr~~f~kf~~~~~~l~~~mks~gevm~igr~ 375 (400)
T COG0458 321 IR--NDI---TGRTPASFEPSLDYVVTKIPRFDFEKFPGADRRLGTQMKSVGEVMAIGRT 375 (400)
T ss_pred HC--CCC---CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEECCH
T ss_conf 44--766---44434445776660366347787321345563310023001028996312