HHsearch alignment for GI: 254780158 and conserved domain: PRK01966
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed.
Probab=99.97 E-value=1.5e-28 Score=212.12 Aligned_cols=284 Identities=15% Similarity=0.145 Sum_probs=194.7
Q ss_pred CCCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCCCH-------HH--CCCEEEEC-CC-------CC
Q ss_conf 9887899980989---------899999999887978999967677713-------42--26827987-89-------99
Q gi|254780158|r 1 MKKKTIGIIGGGQ---------LARMLSMSAARLGFCTVILDPDSNCPA-------NQ--VSNQQIAA-RH-------DD 54 (354)
Q Consensus 1 M~~k~IgIlG~Gq---------L~rml~~aA~~lG~~v~v~d~~~~~pa-------~~--~ad~~~~~-~~-------~D 54 (354)
T Consensus 1 M~k~kI~Vl~GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (344)
T PRK01966 1 MMKIRVALLFGGRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELLLALP 80 (344)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99768999958788218999999999999761508859999983798877256411110245421012344432223455
Q ss_pred HHHHHHHHHHCCEEEECC-CCC--CHHHHHHHHH-CCCC-CCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHH---H
Q ss_conf 999999974199999877-222--1133344430-2003-487677876315278888876505886743210006---8
Q gi|254780158|r 55 IKALNTFADICDYATYES-ENI--PEKSISYLST-LLPT-YPSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQ---E 126 (354)
Q Consensus 55 ~~~l~~~~~~~Dvit~E~-E~i--~~~~l~~l~~-~~~v-~P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~---~ 126 (354)
T Consensus 81 ~~~~~~~~~~~D~vf~alHG~~GEDG~iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~ 160 (344)
T PRK01966 81 GFYEGQLIIEVDVVFPVLHGPPGEDGTIQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRREE 160 (344)
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH
T ss_conf 32210003567899990689997670999999975999368848999987669999999998799989839981666234
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECC
Q ss_conf 8886410013125540234675556645446746778987513--55501011114564433201014665413997053
Q gi|254780158|r 127 SLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASL--GNVPLILERFTDFNCEISIIAARSLNGSICFYDPI 204 (354)
Q Consensus 127 el~~~~~~~g~P~vlKp~~~GydGkG~~~i~~~~~l~~~~~~~--~~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~ 204 (354)
T Consensus 161 ~~~~~~~~l~~P~iVKP~~~GSS-iGvs~v~~~~el~~ai~~a~~~~~~vlvEefI~-GrE~tv~vl~-~~~~~~~l~~~ 237 (344)
T PRK01966 161 AIAEVEEKLGLPVFVKPANLGSS-VGISKVKNEEELEAALDLAFEYDRKVLVEQGIK-GREIECAVLG-YNDEPVASVPG 237 (344)
T ss_pred HHHHHHHHCCCCEEEECCCCCCC-CCEEEECCHHHHHHHHHHHHHCCCCCEEECCCC-CEEEEEEEEC-CCCCEEEECCE
T ss_conf 58999986189879932899634-325996899999999999986397505751244-4899999974-89946773115
Q ss_pred CCCCCCCCE-----------EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEE
Q ss_conf 345435550-----------589852787878999999998867754024677531045538840899941257045604
Q gi|254780158|r 205 QNTHVNGIL-----------HKSIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRVHNSGH 273 (354)
Q Consensus 205 en~~~~gil-----------~~s~~Pa~i~~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~dg~i~vnEiaPR~Hnsgh 273 (354)
T Consensus 238 Ei~~~~~fydy~~KY~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~lg~rg~~RiDf~~d~~g~~y~lEvNt~PGmT-- 315 (344)
T PRK01966 238 EIVKDNDFYDYEAKYIDDSGATLVIPADLSEELTEQIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTLPGFT-- 315 (344)
T ss_pred EECCCCCCCCHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEECCCCCC--
T ss_conf 871798751488810468971696678899999999999999999981997279898999089988999820899987--
Q ss_pred EEHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 62100135889999999818899
Q gi|254780158|r 274 WTEASCVISQFEQHIRSITNLPL 296 (354)
Q Consensus 274 ~t~~~~~~sqfe~h~rai~glpl 296 (354)
T Consensus 316 ------~~Sl~p~~a~~~-G~s~ 331 (344)
T PRK01966 316 ------PISMYPKLWEAS-GLSY 331 (344)
T ss_pred ------CCCHHHHHHHHC-CCCH
T ss_conf ------547899999980-9999