HHsearch alignment for GI: 254780158 and conserved domain: PRK04308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=91.29 E-value=0.63 Score=26.13 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH-C-----CCEEEECCCCCHHHHHHHHHHCCEEEECCCCC
Q ss_conf 88789998098989999999988797899996767771342-2-----68279878999999999974199999877222
Q gi|254780158|r 2 KKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQ-V-----SNQQIAARHDDIKALNTFADICDYATYESENI 75 (354)
Q Consensus 2 ~~k~IgIlG~GqL~rml~~aA~~lG~~v~v~d~~~~~pa~~-~-----ad~~~~~~~~D~~~l~~~~~~~Dvit~E~E~i 75 (354)
T Consensus 4 ~~k~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~-----~~~~~~d~vV~S-PgI 77 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKD-----ALDNGFDILALS-PGI 77 (445)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHH-----HHCCCCCEEEEC-CCC
T ss_conf 99989999989999999999997899199997999953189997436996899378636-----501599999989-953
Q ss_pred CHH--HHHH-HHHCCCCCCCHHHH
Q ss_conf 113--3344-43020034876778
Q gi|254780158|r 76 PEK--SISY-LSTLLPTYPSSRAI 96 (354)
Q Consensus 76 ~~~--~l~~-l~~~~~v~P~~~al 96 (354)
T Consensus 78 ~~~~p~l~~a~~~gi~i~~~~el~ 101 (445)
T PRK04308 78 SERQPDIEAFKQNGGRVLGDIELL 101 (445)
T ss_pred CCCCHHHHHHHHCCCCEECHHHHH
T ss_conf 899999999997599571599999