HHsearch alignment for GI: 254780158 and conserved domain: PRK04308

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=91.29  E-value=0.63  Score=26.13  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=52.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH-C-----CCEEEECCCCCHHHHHHHHHHCCEEEECCCCC
Q ss_conf             88789998098989999999988797899996767771342-2-----68279878999999999974199999877222
Q gi|254780158|r    2 KKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQ-V-----SNQQIAARHDDIKALNTFADICDYATYESENI   75 (354)
Q Consensus         2 ~~k~IgIlG~GqL~rml~~aA~~lG~~v~v~d~~~~~pa~~-~-----ad~~~~~~~~D~~~l~~~~~~~Dvit~E~E~i   75 (354)
T Consensus         4 ~~k~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~-----~~~~~~d~vV~S-PgI   77 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKD-----ALDNGFDILALS-PGI   77 (445)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHH-----HHCCCCCEEEEC-CCC
T ss_conf             99989999989999999999997899199997999953189997436996899378636-----501599999989-953


Q ss_pred             CHH--HHHH-HHHCCCCCCCHHHH
Q ss_conf             113--3344-43020034876778
Q gi|254780158|r   76 PEK--SISY-LSTLLPTYPSSRAI   96 (354)
Q Consensus        76 ~~~--~l~~-l~~~~~v~P~~~al   96 (354)
T Consensus        78 ~~~~p~l~~a~~~gi~i~~~~el~  101 (445)
T PRK04308         78 SERQPDIEAFKQNGGRVLGDIELL  101 (445)
T ss_pred             CCCCHHHHHHHHCCCCEECHHHHH
T ss_conf             899999999997599571599999