HHsearch alignment for GI: 254780158 and conserved domain: PRK12815
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=99.98 E-value=1.5e-29 Score=218.76 Aligned_cols=294 Identities=16% Similarity=0.129 Sum_probs=183.7
Q ss_pred CEEEEECCC-----H------HHHHHHHHHHHCCCEEEEEECCCCCCHH--HCCCEEEECCCCCHHHHHHHH--HHCCEE
Q ss_conf 789998098-----9------8999999998879789999676777134--226827987899999999997--419999
Q gi|254780158|r 4 KTIGIIGGG-----Q------LARMLSMSAARLGFCTVILDPDSNCPAN--QVSNQQIAARHDDIKALNTFA--DICDYA 68 (354)
Q Consensus 4 k~IgIlG~G-----q------L~rml~~aA~~lG~~v~v~d~~~~~pa~--~~ad~~~~~~~~D~~~l~~~~--~~~Dvi 68 (354)
T Consensus 8 kkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~ePl-t~e~v~~Ii~~E~Pd~i 86 (1068)
T PRK12815 8 KKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEPL-TLEFVKRIIRREKPDAL 86 (1068)
T ss_pred CEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECCC-CHHHHHHHHHHHCCCEE
T ss_conf 88999898815312344656569999999998699899988983262089874443788589-89999999997499989
Q ss_pred EECCCC-CCHHHHHHHHH-------CCCCC-CCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 987722-21133344430-------20034-8767787631527888887650588674321000688886410013125
Q gi|254780158|r 69 TYESEN-IPEKSISYLST-------LLPTY-PSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGFKGKG 139 (354)
Q Consensus 69 t~E~E~-i~~~~l~~l~~-------~~~v~-P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~~el~~~~~~~g~P~ 139 (354)
T Consensus 87 l~~~GGqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~~a~~ig~Pv 166 (1068)
T PRK12815 87 LATLGGQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALRFAEKIGFPI 166 (1068)
T ss_pred EECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHCCCCE
T ss_conf 86777847999999999759778659649679999998645999999999976999997052199999999998669989
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHC----CCCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCE--
Q ss_conf 540234675556645446746778987513----55501011114564433201014665413997053345435550--
Q gi|254780158|r 140 ILKTRRLGYDGKGQKVYHENDCTQNLYASL----GNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGIL-- 213 (354)
Q Consensus 140 vlKp~~~GydGkG~~~i~~~~~l~~~~~~~----~~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~~~~gil-- 213 (354)
T Consensus 167 ivRps~-~lGg~g~~i~~n~~eL~~~~~~~~~~S~~~~vlie~sl~gwkEie~ev~RD~~~n~i~vc~mEnidP~GIHTG 245 (1068)
T PRK12815 167 IVRPAY-TLGGDGGGIAENEEELEQLARQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNDNCVTVCNMENIDPVGVHTG 245 (1068)
T ss_pred EEEECC-CCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCC
T ss_conf 998361-0668965044599999999999996399985786501179769999999988989799854123544543567
Q ss_pred -EEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-CCEEEEEEECCCCCCCEEEEHHHCCCCHHHHHHHH
Q ss_conf -5898527-87878999999998867754024677531045538-84089994125704560462100135889999999
Q gi|254780158|r 214 -HKSIVPA-SISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTN-DGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRS 290 (354)
Q Consensus 214 -~~s~~Pa-~i~~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~-dg~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h~ra 290 (354)
T Consensus 246 DSi~vaP~qTL~d~e~q~lR~~a~~I~~~lgv~G~~NiQFAv~p~~~~~~VIEvNPR~SRssalaSKATGyPiAkvaakl 325 (1068)
T PRK12815 246 DSIVVAPSQTLTDDEYQMLRSASLKIIRALGVVGGCNIQFALDPRSKQYYVIEVNPRVSRSSALASKATGYPIAKIAAKL 325 (1068)
T ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 74534578126999999999999999997280101057998869998289996478622024788875088489999998
Q ss_pred HHCCCCCCC
Q ss_conf 818899970
Q gi|254780158|r 291 ITNLPLGNP 299 (354)
Q Consensus 291 i~glpl~~~ 299 (354)
T Consensus 326 alG~~L~ei 334 (1068)
T PRK12815 326 AVGYTLDEI 334 (1068)
T ss_pred HCCCCHHHC
T ss_conf 638877770