HHsearch alignment for GI: 254780158 and conserved domain: PRK12815
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=99.97 E-value=7.8e-29 Score=214.01 Aligned_cols=294 Identities=15% Similarity=0.211 Sum_probs=239.2
Q ss_pred CCCEEEEECCC-----H------HHHHHHHHHHHCCCEEEEEECCCCCCHHH--CCCEEEECCCCCHHHHHHHH--HHCC
Q ss_conf 88789998098-----9------89999999988797899996767771342--26827987899999999997--4199
Q gi|254780158|r 2 KKKTIGIIGGG-----Q------LARMLSMSAARLGFCTVILDPDSNCPANQ--VSNQQIAARHDDIKALNTFA--DICD 66 (354)
Q Consensus 2 ~~k~IgIlG~G-----q------L~rml~~aA~~lG~~v~v~d~~~~~pa~~--~ad~~~~~~~~D~~~l~~~~--~~~D 66 (354)
T Consensus 553 ~~~kvliLGsGP~RIGqgiEFDYc~vha~~aLr~~G~etImiN~NPETVSTDyD~sDrLYFEPl-t~E~V~~I~~~E~p~ 631 (1068)
T PRK12815 553 EKKKVLILGSGPIRIGQGIEFDYMCVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPI-TLEDILNVAEAENIK 631 (1068)
T ss_pred CCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCC-CHHHHHHHHHHHCCC
T ss_conf 9834999567871422442400258999999996897489962784312367455773575368-799999999985899
Q ss_pred EEEECCC-CCCHHHHHHHHH-CCCCC-CCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9998772-221133344430-20034-87677876315278888876505886743210006888864100131255402
Q gi|254780158|r 67 YATYESE-NIPEKSISYLST-LLPTY-PSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGFKGKGILKT 143 (354)
Q Consensus 67 vit~E~E-~i~~~~l~~l~~-~~~v~-P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~~el~~~~~~~g~P~vlKp 143 (354)
T Consensus 632 gVivqfGGQt~lnla~~L~~~gv~IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyPvlvRP 711 (1068)
T PRK12815 632 GVIVQFGGQTAINLAKPLEEAGLPILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKRIGYPVLIRP 711 (1068)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECC
T ss_conf 79996488236799999997699498278688642413999999999738999996354566799999986499778424
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCCCCC----CCEEEEE
Q ss_conf 34675556645446746778987513--55501011114564433201014665413997053345435----5505898
Q gi|254780158|r 144 RRLGYDGKGQKVYHENDCTQNLYASL--GNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVN----GILHKSI 217 (354)
Q Consensus 144 ~~~GydGkG~~~i~~~~~l~~~~~~~--~~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~~~~----gil~~s~ 217 (354)
T Consensus 712 Syv-LgG~~m~iv~~~~eL~~y~~~a~~~~~pvlIdkfl~-g~E~evDai~Dg-~~v~I~gImEHIE~AGVHSGDS~~v~ 788 (1068)
T PRK12815 712 SYV-IGGQGMAVVYDEPALEAYLEENVQQLYPILIDQFID-GKEYEVDAISDG-EDVTIPGIIEHIEQAGVHSGDSIAVL 788 (1068)
T ss_pred CCC-CCCCEEEEECCHHHHHHHHHHHCCCCCCEEEEECCC-CCEEEEEEEECC-CCEEEEEEEECHHHCCCCCCCCEEEE
T ss_conf 433-577423897599999999985157888556230005-404688999649-95599996421131466568854883
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf 52787878999999998867754024677531045538840899941257045604621001358899999998188999
Q gi|254780158|r 218 VPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLG 297 (354)
Q Consensus 218 ~Pa~i~~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~dg~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h~rai~glpl~ 297 (354)
T Consensus 789 Pp~~Ls~~~~~~i~~~t~kia~~L~v~Gl~NiQfav-k~~~vyVIEvNpRASRTvPFvSKatG~pl~~iAtkvmlG~~L~ 867 (1068)
T PRK12815 789 PPQSLSPEQQAKIRDQAIKIAKKLGFRGIMNIQFLL-AGDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKSLA 867 (1068)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCEEECCEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHH
T ss_conf 898789999999999999999648354512699999-7998999996187554326678732988999999998499756
Q ss_pred CCH
Q ss_conf 700
Q gi|254780158|r 298 NPN 300 (354)
Q Consensus 298 ~~~ 300 (354)
T Consensus 868 ~l~ 870 (1068)
T PRK12815 868 ELG 870 (1068)
T ss_pred HCC
T ss_conf 628