HHsearch alignment for GI: 254780158 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=96.71 E-value=0.0031 Score=41.68 Aligned_cols=62 Identities=24% Similarity=0.232 Sum_probs=49.9
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEECCCCCHHHHHHHHH--HCCEEE
Q ss_conf 8999809-8989999999988797899996767771342268279878999999999974--199999
Q gi|254780158|r 5 TIGIIGG-GQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTFAD--ICDYAT 69 (354)
Q Consensus 5 ~IgIlG~-GqL~rml~~aA~~lG~~v~v~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~~~--~~Dvit 69 (354)
T Consensus 1 rilitGa~GQlG~~L~~~l~~~g~~~~~~~~~~~---~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vv 65 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSKPGRVVVALTRSTR---LKLAARWSQLDLTDPEALEELLRAIRPDAVV 65 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCC---CCHHHHHHHHCCCCHHHHHHHHHHHCCCEEE
T ss_conf 9788738756799999970788827864368777---6113365440622468899999852875376