HHsearch alignment for GI: 254780158 and conserved domain: TIGR03278
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=93.42 E-value=0.63 Score=26.14 Aligned_cols=193 Identities=18% Similarity=0.179 Sum_probs=101.7
Q ss_pred CCCCCCCHHHHHHHHCCHHHHHH-HHHCCCCCCC-CCCCCHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCCCCHHHH
Q ss_conf 20034876778763152788888-7650588674-321000688886410013125540234675-55664544674677
Q gi|254780158|r 86 LLPTYPSSRAIEISQDRLYEKKF-FQESGLTTVD-FYEINSQESLTNILGGFKGKGILKTRRLGY-DGKGQKVYHENDCT 162 (354)
Q Consensus 86 ~~~v~P~~~al~~~~dK~~~K~~-l~~~gipt~~-~~~v~s~~el~~~~~~~g~P~vlKp~~~Gy-dGkG~~~i~~~~~l 162 (354)
T Consensus 50 ~~~F~pl~~v~~~v~~~L~f~~~~~~kitISgGGD~ScYP~l~eL~~~l~~~~lpi-----HLGYTSGKGf---d~~~~a 121 (404)
T TIGR03278 50 NGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPI-----HLGYTSGKGF---DDPEIA 121 (404)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCE-----EECCCCCCCC---CCHHHH
T ss_conf 48976979999999986345677722899807988441631999999998669835-----7412378898---987999
Q ss_pred HHHHHH---------CCCCCEEHHHCCC-CCCCCCCEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 898751---------3555010111145-644332010146654139970533454355505898527878789999999
Q gi|254780158|r 163 QNLYAS---------LGNVPLILERFTD-FNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVPASISQKTSLLAHS 232 (354)
Q Consensus 163 ~~~~~~---------~~~~~~iiEe~I~-~~~Eisviv~r~~~G~~~~~p~~en~~~~gil~~s~~Pa~i~~~~~~~a~~ 232 (354)
T Consensus 122 ~~li~~Gv~EVtfTVFatDp~LR~ewM~D~~pE~SL~~L~~fc~~cev~~-----------A~ViiPGVNDGevL~kT-- 188 (404)
T TIGR03278 122 EFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESCEVHA-----------ASVIIPGVNDGDVLWKT-- 188 (404)
T ss_pred HHHHHCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEE-----------EEEEECCCCCHHHHHHH--
T ss_conf 99996797379999860898999987169986889999999984411137-----------89980686856999999--
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEHHHCCCCHHHHHHHH--------HHCCCCCCCHHCCC
Q ss_conf 9886775402467753104553884089994125704560462100135889999999--------81889997000485
Q gi|254780158|r 233 AMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRS--------ITNLPLGNPNRHSN 304 (354)
Q Consensus 233 ~a~~i~~~L~~~Gv~~VEffv~~dg~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h~ra--------i~glpl~~~~~~~~ 304 (354)
T Consensus 189 --~~~Le~wGakg~ILMRFAN~~eqGLIL-~N~Pii~g-----i~~htv~EF~~lV~e~~~~~~~RitGTPl~DP~~gsP 260 (404)
T TIGR03278 189 --CADLESWGAKALILMRFANTEEQGLIL-GNAPIIPG-----IKPHTVSEFKNIVRETHKEFPIRVTGTPLCDPETGAP 260 (404)
T ss_pred --HHHHHHHCCCEEEEEEECCCCCCCEEE-CCCCCCCC-----CCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC
T ss_conf --999998387568987405774441355-68767688-----7767789999999999986393452671678778996
Q ss_pred EEE
Q ss_conf 679
Q gi|254780158|r 305 CVM 307 (354)
Q Consensus 305 ~~m 307 (354)
T Consensus 261 FAi 263 (404)
T TIGR03278 261 FAL 263 (404)
T ss_pred CEE
T ss_conf 133