Query gi|254780159|ref|YP_003064572.1| hypothetical protein CLIBASIA_00210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 96
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 11:29:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780159.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 67.2 2 8.2E-05 21.8 1.7 48 46-93 15-62 (79)
2 2k1k_A Ephrin type-A receptor 24.9 36 0.0015 14.7 3.7 28 47-74 11-38 (38)
3 1emz_A Envelope glycoprotein E 12.7 64 0.0027 13.2 1.3 18 22-39 5-22 (26)
4 2z73_A Rhodopsin; visual pigme 11.8 75 0.0032 12.9 5.8 23 13-35 29-52 (448)
5 3nm9_A HMG-D, high mobility gr 11.0 56 0.0024 13.6 0.6 13 13-25 6-18 (73)
6 1aab_A High mobility group pro 10.1 63 0.0027 13.3 0.6 13 13-25 10-22 (83)
7 1k99_A Upstream binding factor 9.8 66 0.0028 13.2 0.6 16 13-28 13-28 (99)
8 1j46_A SRY, sex-determining re 9.7 62 0.0026 13.3 0.4 15 13-27 7-21 (85)
9 2cs1_A PMS1 protein homolog 1; 9.4 69 0.0029 13.1 0.6 14 12-25 9-22 (92)
10 1wxl_A Single-strand recogniti 9.3 71 0.003 13.0 0.6 13 13-25 6-18 (73)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=67.19 E-value=2 Score=21.79 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 999999999999999999988875402348864344431112644222
Q gi|254780159|r 46 LDMIASMICGLLMSLLIILSFTIVQDRRSSPRIDSDIETSEWNSDKNQ 93 (96)
Q Consensus 46 ldmiasmicgllmslliilsftivqdrrsspridsdietsewnsdknq 93 (96)
+..+++.+.-=|.-|++.--++..+|||.--+...+-..+.|+.+.|.
T Consensus 15 lgvi~~IvliGl~~LliwKll~~i~DrrEy~kFEkEr~~akW~~~~NP 62 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999999999999999977889999999999987778888897
No 2
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.88 E-value=36 Score=14.68 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999998887540234
Q gi|254780159|r 47 DMIASMICGLLMSLLIILSFTIVQDRRS 74 (96)
Q Consensus 47 dmiasmicgllmslliilsftivqdrrs 74 (96)
.-|...|-||+..+-.++.|-+...||.
T Consensus 11 geivavifglll~~alllg~~~fr~rra 38 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEHHHHHHHHHHHHHHHHHHHEECCCC
T ss_conf 6308999999999999998884101259
No 3
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=12.73 E-value=64 Score=13.25 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHCCCCHH
Q ss_conf 999999999874132013
Q gi|254780159|r 22 VVLYTIVCASIIGNWQYS 39 (96)
Q Consensus 22 vvlytivcasiignwqys 39 (96)
-+|-.+..-|..|||.-.
T Consensus 5 gilag~ay~smvgnwak~ 22 (26)
T 1emz_A 5 GVLAGIAYFSMVGNWAKX 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 888888999996038653
No 4
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 2ziy_A*
Probab=11.77 E-value=75 Score=12.87 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf 876899999999999999-87413
Q gi|254780159|r 13 FPVSAFFIFVVLYTIVCA-SIIGN 35 (96)
Q Consensus 13 fpvsaffifvvlytivca-siign 35 (96)
.|...++++-++|.++|. +++||
T Consensus 29 ~~~~~~~~~~~~~~vi~~~gi~GN 52 (448)
T 2z73_A 29 VPDAVYYSLGIFIGICGIIGCGGN 52 (448)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988999999999999999999999
No 5
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=10.99 E-value=56 Score=13.59 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8768999999999
Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96)
Q Consensus 13 fpvsaffifvvly 25 (96)
=|.|||++|.--.
T Consensus 6 rP~say~lF~~~~ 18 (73)
T 3nm9_A 6 RPLSAYALWLNSA 18 (73)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 9997999999999
No 6
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=10.06 E-value=63 Score=13.29 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8768999999999
Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96)
Q Consensus 13 fpvsaffifvvly 25 (96)
-|.|||++|.--.
T Consensus 10 rP~say~~F~~~~ 22 (83)
T 1aab_A 10 GKMSSYAFFVQTS 22 (83)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 9885999999999
No 7
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=9.78 E-value=66 Score=13.17 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8768999999999999
Q gi|254780159|r 13 FPVSAFFIFVVLYTIV 28 (96)
Q Consensus 13 fpvsaffifvvlytiv 28 (96)
=|.|||++|..-+--.
T Consensus 13 rP~say~lF~~~~r~~ 28 (99)
T 1k99_A 13 KPLTPYFRFFMEKRAK 28 (99)
T ss_dssp CSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9987999999999999
No 8
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=9.67 E-value=62 Score=13.35 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 876899999999999
Q gi|254780159|r 13 FPVSAFFIFVVLYTI 27 (96)
Q Consensus 13 fpvsaffifvvlyti 27 (96)
=|.+||++|.--+--
T Consensus 7 RP~nay~lF~~~~R~ 21 (85)
T 1j46_A 7 RPMNAFIVWSRDQRR 21 (85)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 999699999999999
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.45 E-value=69 Score=13.08 Aligned_cols=14 Identities=36% Similarity=0.280 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 58768999999999
Q gi|254780159|r 12 NFPVSAFFIFVVLY 25 (96)
Q Consensus 12 nfpvsaffifvvly 25 (96)
-=|.+||++|.--+
T Consensus 9 krP~saf~lf~~~~ 22 (92)
T 2cs1_A 9 KKPMSASALFVQDH 22 (92)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
T ss_conf 89988999999999
No 10
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=9.28 E-value=71 Score=13.02 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8768999999999
Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96)
Q Consensus 13 fpvsaffifvvly 25 (96)
=|.|||++|.--.
T Consensus 6 rP~say~lf~~~~ 18 (73)
T 1wxl_A 6 RATTAFMLWLNDT 18 (73)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 9978999999999
Done!