Query         gi|254780159|ref|YP_003064572.1| hypothetical protein CLIBASIA_00210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 96
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Sun May 22 20:38:10 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780159.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1qrva_ a.21.1.1 (A:) HMG-D {D  12.1      28  0.0021   13.9   0.6   13   13-25      6-18  (73)
  2 d1j46a_ a.21.1.1 (A:) SRY {Hum  10.5      34  0.0025   13.4   0.6   14   13-26      7-20  (85)
  3 d1ckta_ a.21.1.1 (A:) High mob  10.3      35  0.0026   13.4   0.6   13   13-25      4-16  (71)
  4 d1gt0d_ a.21.1.1 (D:) Sox-2 {M   9.8      38  0.0027   13.2   0.6   13   13-25      5-17  (80)
  5 d1v63a_ a.21.1.1 (A:) Nucleola   9.4      31  0.0022   13.7  -0.0   13   13-25     11-23  (101)
  6 d2lefa_ a.21.1.1 (A:) Lymphoid   9.3      41   0.003   13.0   0.6   13   13-25      5-17  (86)
  7 d1wgfa_ a.21.1.1 (A:) Nucleola   9.2      41   0.003   13.0   0.6   13   13-25     23-35  (90)
  8 d1v64a_ a.21.1.1 (A:) Nucleola   8.8      46  0.0033   12.7   0.7   12   13-24     20-31  (108)
  9 d1lwma_ a.21.1.1 (A:) NHP6a {B   8.2      48  0.0035   12.6   0.6   13   13-25     23-35  (93)
 10 d1i11a_ a.21.1.1 (A:) Sox-5 {M   8.1      49  0.0036   12.6   0.6   13   13-25      5-17  (70)

No 1  
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Probab=12.08  E-value=28  Score=13.91  Aligned_cols=13  Identities=23%  Similarity=0.493  Sum_probs=9.8

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8768999999999
Q gi|254780159|r   13 FPVSAFFIFVVLY   25 (96)
Q Consensus        13 fpvsaffifvvly   25 (96)
                      =|.|||++|.--+
T Consensus         6 rP~say~lf~~~~   18 (73)
T d1qrva_           6 RPLSAYMLWLNSA   18 (73)
T ss_dssp             CCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9985999999999


No 2  
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.52  E-value=34  Score=13.44  Aligned_cols=14  Identities=21%  Similarity=0.361  Sum_probs=10.6

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             87689999999999
Q gi|254780159|r   13 FPVSAFFIFVVLYT   26 (96)
Q Consensus        13 fpvsaffifvvlyt   26 (96)
                      =|.+||++|.--+-
T Consensus         7 RP~nay~lF~~~~r   20 (85)
T d1j46a_           7 RPMNAFIVWSRDQR   20 (85)
T ss_dssp             CCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             99979999999999


No 3  
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.33  E-value=35  Score=13.38  Aligned_cols=13  Identities=23%  Similarity=0.258  Sum_probs=9.5

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8768999999999
Q gi|254780159|r   13 FPVSAFFIFVVLY   25 (96)
Q Consensus        13 fpvsaffifvvly   25 (96)
                      =|.|||++|.--.
T Consensus         4 rP~say~~f~~~~   16 (71)
T d1ckta_           4 GKMSSYAFFVQTC   16 (71)
T ss_dssp             CCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9997999999999


No 4  
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.82  E-value=38  Score=13.21  Aligned_cols=13  Identities=23%  Similarity=0.398  Sum_probs=9.8

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8768999999999
Q gi|254780159|r   13 FPVSAFFIFVVLY   25 (96)
Q Consensus        13 fpvsaffifvvly   25 (96)
                      =|.+||++|.--+
T Consensus         5 RP~nAy~lF~~~~   17 (80)
T d1gt0d_           5 RPMNAFMVWSRGQ   17 (80)
T ss_dssp             CCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9986999999999


No 5  
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.38  E-value=31  Score=13.73  Aligned_cols=13  Identities=15%  Similarity=0.230  Sum_probs=10.0

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8768999999999
Q gi|254780159|r   13 FPVSAFFIFVVLY   25 (96)
Q Consensus        13 fpvsaffifvvly   25 (96)
                      -|++||++|+--+
T Consensus        11 rP~~ay~~F~~e~   23 (101)
T d1v63a_          11 PPMNGYQKFSQEL   23 (101)
T ss_dssp             CCSSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9998999999999


No 6  
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.28  E-value=41  Score=13.02  Aligned_cols=13  Identities=23%  Similarity=0.585  Sum_probs=9.3

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8768999999999
Q gi|254780159|r   13 FPVSAFFIFVVLY   25 (96)
Q Consensus        13 fpvsaffifvvly   25 (96)
                      =|.+||++|.--+
T Consensus         5 RP~naf~lF~~~~   17 (86)
T d2lefa_           5 KPLNAFMLYMKEM   17 (86)
T ss_dssp             CCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9997999999999


No 7  
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.25  E-value=41  Score=13.01  Aligned_cols=13  Identities=54%  Similarity=0.621  Sum_probs=10.0

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8768999999999
Q gi|254780159|r   13 FPVSAFFIFVVLY   25 (96)
Q Consensus        13 fpvsaffifvvly   25 (96)
                      =|.+||++|.--+
T Consensus        23 rP~say~lF~~e~   35 (90)
T d1wgfa_          23 RPVSAMFIFSEEK   35 (90)
T ss_dssp             CCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9976999999999


No 8  
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.80  E-value=46  Score=12.75  Aligned_cols=12  Identities=8%  Similarity=0.321  Sum_probs=9.4

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             876899999999
Q gi|254780159|r   13 FPVSAFFIFVVL   24 (96)
Q Consensus        13 fpvsaffifvvl   24 (96)
                      -|.+||++|+--
T Consensus        20 ~P~~ay~lF~~~   31 (108)
T d1v64a_          20 PPPNSYSLYCAE   31 (108)
T ss_dssp             CCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHH
T ss_conf             999689999999


No 9  
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.17  E-value=48  Score=12.61  Aligned_cols=13  Identities=23%  Similarity=0.306  Sum_probs=9.6

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8768999999999
Q gi|254780159|r   13 FPVSAFFIFVVLY   25 (96)
Q Consensus        13 fpvsaffifvvly   25 (96)
                      -|.+||++|.--.
T Consensus        23 rP~saf~lF~~e~   35 (93)
T d1lwma_          23 RALSAYMFFANEN   35 (93)
T ss_dssp             CCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9987999999999


No 10 
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.10  E-value=49  Score=12.56  Aligned_cols=13  Identities=23%  Similarity=0.419  Sum_probs=9.1

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8768999999999
Q gi|254780159|r   13 FPVSAFFIFVVLY   25 (96)
Q Consensus        13 fpvsaffifvvly   25 (96)
                      =|.+||++|.--.
T Consensus         5 RP~nay~lf~~~~   17 (70)
T d1i11a_           5 RPMNAFMVWAKDE   17 (70)
T ss_dssp             CSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9998999999999


Done!