Query gi|254780159|ref|YP_003064572.1| hypothetical protein CLIBASIA_00210 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 96 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Sun May 22 20:38:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780159.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1qrva_ a.21.1.1 (A:) HMG-D {D 12.1 28 0.0021 13.9 0.6 13 13-25 6-18 (73) 2 d1j46a_ a.21.1.1 (A:) SRY {Hum 10.5 34 0.0025 13.4 0.6 14 13-26 7-20 (85) 3 d1ckta_ a.21.1.1 (A:) High mob 10.3 35 0.0026 13.4 0.6 13 13-25 4-16 (71) 4 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 9.8 38 0.0027 13.2 0.6 13 13-25 5-17 (80) 5 d1v63a_ a.21.1.1 (A:) Nucleola 9.4 31 0.0022 13.7 -0.0 13 13-25 11-23 (101) 6 d2lefa_ a.21.1.1 (A:) Lymphoid 9.3 41 0.003 13.0 0.6 13 13-25 5-17 (86) 7 d1wgfa_ a.21.1.1 (A:) Nucleola 9.2 41 0.003 13.0 0.6 13 13-25 23-35 (90) 8 d1v64a_ a.21.1.1 (A:) Nucleola 8.8 46 0.0033 12.7 0.7 12 13-24 20-31 (108) 9 d1lwma_ a.21.1.1 (A:) NHP6a {B 8.2 48 0.0035 12.6 0.6 13 13-25 23-35 (93) 10 d1i11a_ a.21.1.1 (A:) Sox-5 {M 8.1 49 0.0036 12.6 0.6 13 13-25 5-17 (70) No 1 >d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]} Probab=12.08 E-value=28 Score=13.91 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=9.8 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8768999999999 Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96) Q Consensus 13 fpvsaffifvvly 25 (96) =|.|||++|.--+ T Consensus 6 rP~say~lf~~~~ 18 (73) T d1qrva_ 6 RPLSAYMLWLNSA 18 (73) T ss_dssp CCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 9985999999999 No 2 >d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]} Probab=10.52 E-value=34 Score=13.44 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=10.6 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 87689999999999 Q gi|254780159|r 13 FPVSAFFIFVVLYT 26 (96) Q Consensus 13 fpvsaffifvvlyt 26 (96) =|.+||++|.--+- T Consensus 7 RP~nay~lF~~~~r 20 (85) T d1j46a_ 7 RPMNAFIVWSRDQR 20 (85) T ss_dssp CCCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH T ss_conf 99979999999999 No 3 >d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=10.33 E-value=35 Score=13.38 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=9.5 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8768999999999 Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96) Q Consensus 13 fpvsaffifvvly 25 (96) =|.|||++|.--. T Consensus 4 rP~say~~f~~~~ 16 (71) T d1ckta_ 4 GKMSSYAFFVQTC 16 (71) T ss_dssp CCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 9997999999999 No 4 >d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=9.82 E-value=38 Score=13.21 Aligned_cols=13 Identities=23% Similarity=0.398 Sum_probs=9.8 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8768999999999 Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96) Q Consensus 13 fpvsaffifvvly 25 (96) =|.+||++|.--+ T Consensus 5 RP~nAy~lF~~~~ 17 (80) T d1gt0d_ 5 RPMNAFMVWSRGQ 17 (80) T ss_dssp CCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 9986999999999 No 5 >d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=9.38 E-value=31 Score=13.73 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=10.0 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8768999999999 Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96) Q Consensus 13 fpvsaffifvvly 25 (96) -|++||++|+--+ T Consensus 11 rP~~ay~~F~~e~ 23 (101) T d1v63a_ 11 PPMNGYQKFSQEL 23 (101) T ss_dssp CCSSSHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 9998999999999 No 6 >d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=9.28 E-value=41 Score=13.02 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=9.3 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8768999999999 Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96) Q Consensus 13 fpvsaffifvvly 25 (96) =|.+||++|.--+ T Consensus 5 RP~naf~lF~~~~ 17 (86) T d2lefa_ 5 KPLNAFMLYMKEM 17 (86) T ss_dssp CCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 9997999999999 No 7 >d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=9.25 E-value=41 Score=13.01 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=10.0 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8768999999999 Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96) Q Consensus 13 fpvsaffifvvly 25 (96) =|.+||++|.--+ T Consensus 23 rP~say~lF~~e~ 35 (90) T d1wgfa_ 23 RPVSAMFIFSEEK 35 (90) T ss_dssp CCCCHHHHHHHHT T ss_pred CCCCHHHHHHHHH T ss_conf 9976999999999 No 8 >d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=8.80 E-value=46 Score=12.75 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=9.4 Q ss_pred CCHHHHHHHHHH Q ss_conf 876899999999 Q gi|254780159|r 13 FPVSAFFIFVVL 24 (96) Q Consensus 13 fpvsaffifvvl 24 (96) -|.+||++|+-- T Consensus 20 ~P~~ay~lF~~~ 31 (108) T d1v64a_ 20 PPPNSYSLYCAE 31 (108) T ss_dssp CCSSHHHHHHHH T ss_pred CCCCHHHHHHHH T ss_conf 999689999999 No 9 >d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=8.17 E-value=48 Score=12.61 Aligned_cols=13 Identities=23% Similarity=0.306 Sum_probs=9.6 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8768999999999 Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96) Q Consensus 13 fpvsaffifvvly 25 (96) -|.+||++|.--. T Consensus 23 rP~saf~lF~~e~ 35 (93) T d1lwma_ 23 RALSAYMFFANEN 35 (93) T ss_dssp CCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 9987999999999 No 10 >d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]} Probab=8.10 E-value=49 Score=12.56 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=9.1 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8768999999999 Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96) Q Consensus 13 fpvsaffifvvly 25 (96) =|.+||++|.--. T Consensus 5 RP~nay~lf~~~~ 17 (70) T d1i11a_ 5 RPMNAFMVWAKDE 17 (70) T ss_dssp CSCCHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 9998999999999 Done!