RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780159|ref|YP_003064572.1| hypothetical protein
CLIBASIA_00210 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>gnl|CDD|146941 pfam04547, Anoctamin, Calcium-activated chloride channel.  The
           family carries eight putative transmembrane domains,
           and, although it has no similarity to other known
           channel proteins, it is clearly a calcium-activated
           ionic channel. It is expressed in various secretory
           epithelia, the retina and sensory neurons, and mediates
           receptor-activated chloride currents in diverse
           physiological processes.
          Length = 446

 Score = 33.7 bits (78), Expect = 0.011
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 9   ICSNFPVSAFFIFVVLYTIVCASIIGNWQYSIHKRPALDMIASMICGLLMSLLI-ILSF 66
              + PV   FI +V+  I+   I+  +   I+  P    + S +  +L S++I IL+F
Sbjct: 120 QLLSIPVVLLFIGLVIGIIIGIFILRIFLSEIYSGPFKQTLESFLPAILNSVIILILNF 178


>gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
           structure and biogenesis].
          Length = 198

 Score = 28.3 bits (63), Expect = 0.48
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 30  ASIIGNWQYSIHKRPALDMIASMICGLLMSLLIILSFTIVQDRRSS------PRIDSDI 82
           A  I +  YSIHK  + D +      L  ++  I        R          RI+ DI
Sbjct: 133 ALEISDVVYSIHKAGSRDFVEKFAADLGGTVTHIERARFPIPRTYPFHRKRVRRIEVDI 191


>gnl|CDD|34014 COG4292, COG4292, Predicted membrane protein [Function unknown].
          Length = 387

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 6   SRAICSNFPVSAFFIFVVLYTIV-----CASIIGNWQYSIHKRPALDMIASMICGLLMSL 60
           S  +  +F ++ F  +++L   +       +   N   +  +   L ++  M  G+L++ 
Sbjct: 39  SHLLLGDFSLALFGEYLLLILALWWAWIHTTWFTNRLGTEIEPVRLLLLVLMFFGVLLAA 98

Query: 61  LIILSF 66
            +  +F
Sbjct: 99  SLPPAF 104


>gnl|CDD|39458 KOG4257, KOG4257, KOG4257, Focal adhesion tyrosine kinase FAK,
           contains FERM domain [Signal transduction mechanisms].
          Length = 974

 Score = 25.4 bits (55), Expect = 3.2
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 23  VLYTIVCASIIGNWQYSIHKRPALDMIASMICGLLMSLLIILSFTIVQDRRSSPRI 78
            LY+++       W Y   KRP    I +++  +L    I  S  + + R+ +  I
Sbjct: 620 ALYSLMSKC----WAYEPSKRPRFTEIKAILSDVLQEEKINSSEQLRRQRKVASMI 671


>gnl|CDD|32610 COG2717, COG2717, Predicted membrane protein [Function unknown].
          Length = 209

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 19  FIFVVLYTIVCASIIGNWQYS-----IHKRPALDMIASMICGLLMSLLIILSFTIVQDR 72
           F + +L+      +      +     + KRP   +   MI  LL+  L + SF  V+ R
Sbjct: 85  FFYALLHFTAYLVLDLGLDLALLGLDLLKRPY--ITIGMIAFLLLIPLALTSFKWVRRR 141


>gnl|CDD|33583 COG3788, COG3788, Uncharacterized relative of glutathione
          S-transferase, MAPEG superfamily [General function
          prediction only].
          Length = 131

 Score = 24.9 bits (54), Expect = 5.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 48 MIASMICGLLMSLLIILSFTIVQDRR 73
          M++++   L   LL+ LSF +V+ R 
Sbjct: 5  MVSALYAVLNALLLLKLSFDVVRLRM 30


>gnl|CDD|32724 COG2899, COG2899, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 346

 Score = 24.8 bits (54), Expect = 5.7
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 18 FFIFVVLYTIVCASIIGNWQYSIHKRPALDMIASMICGLLMSLLIILSF 66
          +F +  + T++  ++     Y           A  IC +L  L I LSF
Sbjct: 6  YFGWSFIVTVIALALAAWLGYE---YGGTMWTALFICAVLAVLEISLSF 51


>gnl|CDD|147245 pfam04971, Lysis_S, Lysis protein S.  The lysis S protein is a
          cytotoxic protein forming holes in membranes causing
          cell lysis. The action of Lysis S is independent of the
          proportion of acidic phospholipids in the membrane.
          Length = 68

 Score = 24.2 bits (52), Expect = 8.0
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 45 ALDMIASMICGLLMSLLIILSFTIVQDRRSSPR 77
          A+ ++ S++ GLL + L  L F I +DRR + R
Sbjct: 35 AIGVLGSLVFGLL-TYLTNLYFKIREDRRKAAR 66


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.327    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,145,643
Number of extensions: 50384
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 37
Length of query: 96
Length of database: 6,263,737
Length adjustment: 64
Effective length of query: 32
Effective length of database: 4,880,761
Effective search space: 156184352
Effective search space used: 156184352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)