254780160
hypothetical protein CLIBASIA_00215
GeneID in NCBI database: | 8209137 | Locus tag: | CLIBASIA_00215 |
Protein GI in NCBI database: | 254780160 | Protein Accession: | YP_003064573.1 |
Gene range: | +(42884, 43780) | Protein Length: | 298aa |
Gene description: | hypothetical protein | ||
COG prediction: | none | ||
KEGG prediction: | hypothetical protein | ||
SEED prediction: | hypothetical protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 298 | hypothetical protein CLIBASIA_00215 [Candidatus Liberib | |||
315122760 | 301 | hypothetical protein CKC_05070 [Candidatus Liberibacter | 1 | 1e-123 | |
190891874 | 365 | hypothetical protein RHECIAT_CH0002283 [Rhizobium etli | 1 | 2e-66 | |
327188319 | 365 | hypothetical protein RHECNPAF_910012 [Rhizobium etli CN | 1 | 4e-66 | |
86357811 | 367 | hypothetical protein RHE_CH02195 [Rhizobium etli CFN 42 | 1 | 3e-65 | |
209549438 | 366 | hypothetical protein Rleg2_1844 [Rhizobium leguminosaru | 1 | 3e-64 | |
116252273 | 366 | hypothetical protein RL2527 [Rhizobium leguminosarum bv | 1 | 5e-64 | |
241204764 | 366 | hypothetical protein Rleg_2043 [Rhizobium leguminosarum | 1 | 1e-63 | |
222086048 | 376 | hypothetical protein Arad_2470 [Agrobacterium radiobact | 1 | 6e-61 | |
150396276 | 349 | hypothetical protein Smed_1055 [Sinorhizobium medicae W | 1 | 5e-57 | |
15889048 | 326 | hypothetical protein Atu1745 [Agrobacterium tumefaciens | 1 | 7e-56 |
>gi|315122760|ref|YP_004063249.1| hypothetical protein CKC_05070 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 301 | Back alignment and organism information |
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Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/294 (73%), Positives = 254/294 (86%), Gaps = 5/294 (1%) Query: 4 SFSSYAKAEN---MHTTSTLLNNNISKGKGKRVVDAQRITCEARLTENSTSIDSGVSWHI 60 SF SYAK EN +HTTST +N++SKGKGK+++ AQ+I C+ARLTENS I+SGVSWH+ Sbjct: 6 SFPSYAKTENPSDIHTTSTS-SNDMSKGKGKKIIPAQKIICKARLTENSPFINSGVSWHV 64 Query: 61 FDSISNKKNTLSTTKKIIGGKVSFDLFPGDYLISASFGHVGVVKKITVSSKEKNQKQVFI 120 FD+ NKK+TLST KKIIGG V +LFPGDYL+SASFGHVGVVK+ITV+ ++ +K F+ Sbjct: 65 FDTTLNKKDTLSTIKKIIGGIVYLELFPGDYLVSASFGHVGVVKRITVTPTKQIEKHTFV 124 Query: 121 LNAGGIRLYSIYKPGSPIVDDELTFSIYSNPNHKALLITDKVRSGTLVR-LGTNNYQITS 179 NAGGIRLYSIYKP SPIVDDELTFSIYSNPN K L+I DKV SGTL+R LG+ NYQITS Sbjct: 125 FNAGGIRLYSIYKPDSPIVDDELTFSIYSNPNQKPLMIADKVSSGTLIRLLGSTNYQITS 184 Query: 180 HYGKYNAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEMGGEAVADTAWSILTASGDTV 239 HYGKYNA+VST+VKVE GK+IDVTIQNRAAK TFKLVSE GGEA+ADTAWSILTA GDTV Sbjct: 185 HYGKYNAVVSTIVKVESGKVIDVTIQNRAAKTTFKLVSEAGGEAIADTAWSILTAGGDTV 244 Query: 240 GESANASPSMVLSEGDYTVIARNKERNYSREFSVLTGKSTIVEVLMRQKRMDKN 293 GES +A PSM+LSEGDY VIARNKER YSREFSV TGK+ ++EV+M+QKR+DK+ Sbjct: 245 GESVHAFPSMILSEGDYVVIARNKERIYSREFSVTTGKNKVIEVIMKQKRVDKS 298 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|190891874|ref|YP_001978416.1| hypothetical protein RHECIAT_CH0002283 [Rhizobium etli CIAT 652] Length = 365 | Back alignment and organism information |
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>gi|327188319|gb|EGE55537.1| hypothetical protein RHECNPAF_910012 [Rhizobium etli CNPAF512] Length = 365 | Back alignment and organism information |
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>gi|86357811|ref|YP_469703.1| hypothetical protein RHE_CH02195 [Rhizobium etli CFN 42] Length = 367 | Back alignment and organism information |
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>gi|209549438|ref|YP_002281355.1| hypothetical protein Rleg2_1844 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 366 | Back alignment and organism information |
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>gi|116252273|ref|YP_768111.1| hypothetical protein RL2527 [Rhizobium leguminosarum bv. viciae 3841] Length = 366 | Back alignment and organism information |
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>gi|241204764|ref|YP_002975860.1| hypothetical protein Rleg_2043 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 366 | Back alignment and organism information |
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>gi|222086048|ref|YP_002544580.1| hypothetical protein Arad_2470 [Agrobacterium radiobacter K84] Length = 376 | Back alignment and organism information |
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>gi|150396276|ref|YP_001326743.1| hypothetical protein Smed_1055 [Sinorhizobium medicae WSM419] Length = 349 | Back alignment and organism information |
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>gi|15889048|ref|NP_354729.1| hypothetical protein Atu1745 [Agrobacterium tumefaciens str. C58] Length = 326 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 298 | hypothetical protein CLIBASIA_00215 [Candidatus Liberib | ||
COG4932 | 1531 | Predicted outer membrane protein [Cell envelope biogene | 100.0 | |
COG4932 | 1531 | Predicted outer membrane protein [Cell envelope biogene | 100.0 | |
KOG1948 | 1165 | consensus | 99.45 | |
KOG1948 | 1165 | consensus | 99.14 | |
pfam05738 | 69 | Cna_B Cna protein B-type domain. This domain is found i | 97.95 | |
pfam02369 | 93 | Big_1 Bacterial Ig-like domain (group 1). This family c | 92.21 | |
pfam08400 | 134 | phage_tail_N Prophage tail fibre N-terminal. This domai | 91.56 | |
smart00634 | 92 | BID_1 Bacterial Ig-like domain (group 1). | 90.8 | |
pfam05738 | 69 | Cna_B Cna protein B-type domain. This domain is found i | 97.94 | |
cd03864 | 392 | M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also kno | 96.85 | |
cd06245 | 363 | M14_CPD_III The third carboxypeptidase (CP)-like domain | 96.76 | |
cd03863 | 375 | M14_CPD_II The second carboxypeptidase (CP)-like domain | 96.53 | |
cd03865 | 402 | M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, a | 96.52 | |
cd03869 | 405 | M14_CPX_like Peptidase M14-like domain of carboxypeptid | 96.03 | |
cd03858 | 374 | M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamil | 96.02 | |
cd03868 | 372 | M14_CPD_I The first carboxypeptidase (CP)-like domain o | 95.66 | |
cd03867 | 395 | M14_CPZ Peptidase M14-like domain of carboxypeptidase ( | 95.54 | |
cd03866 | 376 | M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) bel | 94.3 | |
pfam08308 | 71 | PEGA PEGA domain. This domain is found in both archaea | 93.89 | |
cd03863 | 375 | M14_CPD_II The second carboxypeptidase (CP)-like domain | 97.89 | |
cd03864 | 392 | M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also kno | 97.79 | |
cd03865 | 402 | M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, a | 97.68 | |
cd06245 | 363 | M14_CPD_III The third carboxypeptidase (CP)-like domain | 97.67 | |
cd03868 | 372 | M14_CPD_I The first carboxypeptidase (CP)-like domain o | 97.48 | |
cd03867 | 395 | M14_CPZ Peptidase M14-like domain of carboxypeptidase ( | 97.36 | |
KOG2649 | 500 | consensus | 97.33 | |
cd03869 | 405 | M14_CPX_like Peptidase M14-like domain of carboxypeptid | 97.3 | |
cd03858 | 374 | M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamil | 97.18 | |
pfam07210 | 86 | DUF1416 Protein of unknown function (DUF1416). This fam | 96.83 | |
pfam08308 | 71 | PEGA PEGA domain. This domain is found in both archaea | 96.52 | |
cd03866 | 376 | M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) bel | 96.47 | |
pfam11589 | 106 | DUF3244 Protein of unknown function (DUF3244). This fam | 92.2 |
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>KOG1948 consensus | Back alignment and domain information |
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>KOG1948 consensus | Back alignment and domain information |
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>pfam05738 Cna_B Cna protein B-type domain | Back alignment and domain information |
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>pfam02369 Big_1 Bacterial Ig-like domain (group 1) | Back alignment and domain information |
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>pfam08400 phage_tail_N Prophage tail fibre N-terminal | Back alignment and domain information |
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>smart00634 BID_1 Bacterial Ig-like domain (group 1) | Back alignment and domain information |
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>pfam05738 Cna_B Cna protein B-type domain | Back alignment and domain information |
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>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 | Back alignment and domain information |
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>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 | Back alignment and domain information |
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>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 | Back alignment and domain information |
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>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 | Back alignment and domain information |
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>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) | Back alignment and domain information |
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>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) | Back alignment and domain information |
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>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 | Back alignment and domain information |
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>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) | Back alignment and domain information |
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>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) | Back alignment and domain information |
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>pfam08308 PEGA PEGA domain | Back alignment and domain information |
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>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 | Back alignment and domain information |
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>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 | Back alignment and domain information |
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>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 | Back alignment and domain information |
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>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 | Back alignment and domain information |
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>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 | Back alignment and domain information |
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>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) | Back alignment and domain information |
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>KOG2649 consensus | Back alignment and domain information |
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>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) | Back alignment and domain information |
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>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) | Back alignment and domain information |
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>pfam07210 DUF1416 Protein of unknown function (DUF1416) | Back alignment and domain information |
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>pfam08308 PEGA PEGA domain | Back alignment and domain information |
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>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) | Back alignment and domain information |
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>pfam11589 DUF3244 Protein of unknown function (DUF3244) | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 298 | hypothetical protein CLIBASIA_00215 [Candidatus Liberib | ||
3phs_A | 249 | Crystal Structure Of Gbs52, The Minor Pilin In Gram | 0.001 | |
2pz4_A | 239 | Crystal Structure Of Spab (Gbs52), The Minor Pilin | 0.001 | |
3phs_A | 249 | Crystal Structure Of Gbs52, The Minor Pilin In Gram | 0.004 | |
2x5p_A | 121 | Crystal Structure Of The Streptococcus Pyogenes Fib | 0.002 |
>gi|312208206|pdb|3PHS|A Chain A, Crystal Structure Of Gbs52, The Minor Pilin In Gram-Positive Pathogen Streptococcus Agalactiae Length = 249 | Back alignment and structure |
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 46/176 (26%), Gaps = 30/176 (17%) Query: 146 SIYSNPNHKALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIIDVTIQ 205 + T++ T +L Y + + V+ + + + Sbjct: 71 ELKKQAQQVFEATTNQQGKATFNQLPDGIYYGLAVKAGEKNRNVSAFLVDLSEDKVIYPK 130 Query: 206 NRAAKITFKL----VSEMGGEAVADTAWSILTASGDTV-------------------GES 242 + L V + +A + + +G T +S Sbjct: 131 IIWSTGELDLLKVGVDGDTKKPLAGVVFELYEKNGRTPIRVKNGVHSQDIDAAKHLETDS 190 Query: 243 ANASPSMVLSEGDYTVIARNKERNYS-----REFSVLTGKSTIVEVLMRQKRMDKN 293 + L GDY + + Y ++ K+ V V + K++ Sbjct: 191 SGHIRISGLIHGDYVLKEIETQSGYQIGQAETAVTIEKSKT--VTVTIENKKVPTP 244 |
>gi|312208206|pdb|3PHS|A Chain A, Crystal Structure Of Gbs52, The Minor Pilin In Gram-Positive Pathogen Streptococcus Agalactiae Length = 249 | Back alignment and structure |
>gi|305677624|pdb|2X5P|A Chain A, Crystal Structure Of The Streptococcus Pyogenes Fibronectin Binding Protein Fbab-B Length = 121 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 298 | hypothetical protein CLIBASIA_00215 [Candidatus Liberib | ||
3kpt_A | 355 | Collagen adhesion protein; intramolecular amide bond, p | 99.77 | |
1d2p_A | 373 | Collagen adhesin, CNA; IGG, IGSF, mscramm, structural p | 98.7 | |
1d2p_A | 373 | Collagen adhesin, CNA; IGG, IGSF, mscramm, structural p | 98.5 | |
1cwv_A | 492 | Invasin; integrin-binding protein, INV gene, structural | 97.79 | |
2pz4_A | 239 | Protein GBS052; SPAB, GRAM-positive pilins, adhesions, | 99.64 | |
2x9x_A | 444 | RRGB, cell WALL surface anchor family protein; cell adh | 97.86 | |
1d2o_A | 187 | Collagen adhesin, CNA; beta sandwich, IGG, IGSF, struct | 90.1 | |
2pz4_A | 239 | Protein GBS052; SPAB, GRAM-positive pilins, adhesions, | 99.6 | |
2x9x_A | 444 | RRGB, cell WALL surface anchor family protein; cell adh | 98.92 | |
3hr6_A | 436 | SPAA, putative surface-anchored fimbrial subunit; multi | 99.13 | |
2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG, pil | 98.99 | |
2x5p_A | 121 | FBA2, fibronectin binding protein; protein binding; 1.6 | 98.81 | |
1h8l_A | 380 | Carboxypeptidase GP180 residues 503-882; hydrolase, zin | 98.47 | |
2nsm_A | 439 | Carboxypeptidase N catalytic chain; caroxypeptidase, zi | 98.18 | |
2x9z_A | 262 | RRGB, cell WALL surface anchor family protein; cell adh | 97.69 | |
3irp_X | 429 | URO-adherence factor A; DEV-IGG fold, cell WALL, hemagg | 97.46 | |
3mn8_A | 435 | LP15968P; catalytic domain of alpha/beta-hydrolase fold | 97.13 | |
1uwy_A | 426 | Carboxypeptidase M; metallopeptidase, GPI-anchor, metal | 97.03 | |
1nkg_A | 508 | Rhamnogalacturonase B; polysaccharide lyase, carbohydra | 96.38 | |
3e8v_A | 82 | Possible transglutaminase-family protein; structural ge | 94.87 | |
2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG, pil | 98.99 | |
2xi9_A | 457 | Ancillary protein 1; cell adhesion, GRAM positive pilus | 98.76 | |
3hr6_A | 436 | SPAA, putative surface-anchored fimbrial subunit; multi | 97.62 | |
2x5p_A | 121 | FBA2, fibronectin binding protein; protein binding; 1.6 | 98.9 | |
2xi9_A | 457 | Ancillary protein 1; cell adhesion, GRAM positive pilus | 98.71 | |
3kpt_A | 355 | Collagen adhesion protein; intramolecular amide bond, p | 98.36 | |
2nsm_A | 439 | Carboxypeptidase N catalytic chain; caroxypeptidase, zi | 97.55 | |
1h8l_A | 380 | Carboxypeptidase GP180 residues 503-882; hydrolase, zin | 97.23 | |
1uwy_A | 426 | Carboxypeptidase M; metallopeptidase, GPI-anchor, metal | 96.12 | |
2x9z_A | 262 | RRGB, cell WALL surface anchor family protein; cell adh | 97.37 | |
3irp_X | 429 | URO-adherence factor A; DEV-IGG fold, cell WALL, hemagg | 97.21 | |
1xpn_A | 170 | Hypothetical protein PA1324; B-barrel, structural genom | 93.24 | |
1xpn_A | 170 | Hypothetical protein PA1324; B-barrel, structural genom | 94.76 |
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} | Back alignment and structure |
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Probab=99.77 E-value=1.8e-16 Score=123.13 Aligned_cols=248 Identities=9% Similarity=0.060 Sum_probs=135.4 Q ss_pred EEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEEEEEECCCCCE-----EEEEEECCC Q ss_conf 279999986887753467599999538887620588982468566302267218999961577752-----789980686 Q gi|254780160|r 38 RITCEARLTENSTSIDSGVSWHIFDSISNKKNTLSTTKKIIGGKVSFDLFPGDYLISASFGHVGVV-----KKITVSSKE 112 (298) Q Consensus 38 ~i~l~a~~~~~~~~~~~G~~~~vy~~~~~~~g~~~~tt~~~G~~~~~~L~pG~Y~v~~s~g~~~~~-----~~vtV~~~~ 112 (298) +|.|... +..+..|+||+|+||+... .......+|+++|.+.+.+|+||+|.|+|...|.+|. ..+++.... T Consensus 9 ~i~i~K~--d~~~~~L~Ga~f~l~~~~g-~~~~~~~tTd~~G~~~f~~L~~G~Y~v~E~~aP~GY~~~~~~~~~~v~~~~ 85 (355) T 3kpt_A 9 AVDLIKT--GVNEKAMAGAVFSLFKKDG-TEVKKELATDANGHIRVQGLEYGEYYFQETKAPKGYVIDPTKREFFVKNSG 85 (355) T ss_dssp EEEEEEE--CGGGCBCCSCEEEEEETTS-CEEEEEEECCTTSEEEEEEEESEEEEEEEEECCTTBCCCCCCEEEEECSCE T ss_pred EEEEEEE--CCCCCEECCCEEEEEECCC-CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEECCCC T ss_conf 9999999--8999870895899998999-999787999999839999869632899999899982603442201651365 Q ss_pred CEE----------EEEEECCCCEEEEEEEECCCC----CCCCCEEEEEEE------------------CCCCCE------ Q ss_conf 136----------787513664379998615788----777551899998------------------389743------ Q gi|254780160|r 113 KNQ----------KQVFILNAGGIRLYSIYKPGS----PIVDDELTFSIY------------------SNPNHK------ 154 (298) Q Consensus 113 ~~~----------~~~~~~~ag~~~~~~~~~~~~----~~~~~~~~f~i~------------------~~~~~~------ 154 (298) ... ....+.......+........ ..+.....+.+. ...... T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355) T 3kpt_A 86 TINEDGTITSGTVVKMEVKNNEEPTIDKKINGKLEALPINPLTNYNYDIKTLIPEDIKEYKKYVVTDTLDNRLVIQGKPI 165 (355) T ss_dssp EECTTSSCEEECEEEEEEECCBCCCEEEEETTTBSEEEECTTCCEEEEEEEECCTTGGGCSEEEEEEECCTTEEECSCCE T ss_pred EEEEECEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEECCEEEEEEECCCCCEEECCEEE T ss_conf 03440115245305778720012110111245125543036754157876325420001347999982656378526046 Q ss_pred ------------EEE----------EEECCCCCEEEEECCCCEEEEEEECCCCCEEEE--E--EEECCCCE-----EEEE Q ss_conf ------------566----------750567513521067617999961577854454--4--88428863-----7899 Q gi|254780160|r 155 ------------ALL----------ITDKVRSGTLVRLGTNNYQITSHYGKYNAIVST--V--VKVEPGKI-----IDVT 203 (298) Q Consensus 155 ------------~~~----------~t~~~~~~~~~~L~~G~Y~v~et~a~~~~~~~~--~--i~V~~g~~-----~~~t 203 (298) ... ............+..+.|.+++...|.++.... . +....... .... T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (355) T 3kpt_A 166 VKIDGAEVNANVVEVAIEGQKVTATVKDFTKMDGKKEFHLQIKSQVKEGVPSGSEILNTAKIHFTNKNDVIGEKESKPVV 245 (355) T ss_dssp EEETTEECCTTTEEEEEETTEEEEEECCSGGGTTCCEEEEEEEEEECTTCCTTCCEEECCEEEEECTTCCEEEEECCCEE T ss_pred EEECCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEECCCCEEEEECCCCEEEEEEEEEEE T ss_conf 77527653001588832686798986202333463234444127988733665030344307897357603555666678 Q ss_pred EEECCCEEEEEEEECCCCCCCCCEEEEEECCCCCE----------EEECCCCEEECCCCCEEEEEEEECCCCEEEE---- Q ss_conf 99345238999983478863276089998389979----------7421252121244870289999538824677---- Q gi|254780160|r 204 IQNRAAKITFKLVSEMGGEAVADTAWSILTASGDT----------VGESANASPSMVLSEGDYTVIARNKERNYSR---- 269 (298) Q Consensus 204 v~~~~~~~~~~~v~~~~G~~l~ga~~~i~~~~g~~----------vt~~~G~~~~~~L~~G~Y~v~a~~~~~~y~~---- 269 (298) .....+.+.+.+++..++++|+||.|.|++.+|.. +++.+|.+.+.+|++|+|+|.+..+|.+|.. T Consensus 246 ~~~~~g~~~~~K~d~~~~~~L~Ga~F~l~~~~g~~v~~~~~~~t~~Td~~G~~~~~~L~~G~Y~l~EtkaP~GY~~~~~~ 325 (355) T 3kpt_A 246 VIPTTGIIELTKIDSANKNKMKGAEFVLKDNNGKIVVVAGKEVTGVSDENGVIKWSNIPYGDYQIFETKAPTYTKEDGTK 325 (355) T ss_dssp EEECEEEEEEEEEETTTCCBCSCCEEEEEETTSCBCBSSSSBCEEECCTTSEEEEEEEESSEEEEEEEECCEEECTTCCE T ss_pred EEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEECCCEEEEEECCCCEEEECCCCCCEEEEEEEECCCCCCCCCCC T ss_conf 86741524799974888830188589999179999950574768998999889989998935999999789974357764 Q ss_pred --------EEEEEECCC-CEEEEEEECH Q ss_conf --------799972885-0489997410 Q gi|254780160|r 270 --------EFSVLTGKS-TIVEVLMRQK 288 (298) Q Consensus 270 --------~ftV~~g~~-~~veV~~~~~ 288 (298) ++.|...++ ..+++.+.++ T Consensus 326 ~~y~~~~~~i~~~i~~~~~~~~~t~~n~ 353 (355) T 3kpt_A 326 TSYQLLKDPIDVKISENNQTVKLTIENN 353 (355) T ss_dssp EECCCCCSCEEEECBTTBCEEEEEEEEC T ss_pred CCEEECCCEEEEEEEECCEEEEEEEEEC T ss_conf 4459749608999951992999999957 |
>1d2p_A Collagen adhesin, CNA; IGG, IGSF, mscramm, structural protein; 2.50A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 b.3.5.1 b.3.5.1 | Back alignment and structure |
---|
>1d2p_A Collagen adhesin, CNA; IGG, IGSF, mscramm, structural protein; 2.50A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 b.3.5.1 b.3.5.1 | Back alignment and structure |
---|
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3 | Back alignment and structure |
---|
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A | Back alignment and structure |
---|
>1d2o_A Collagen adhesin, CNA; beta sandwich, IGG, IGSF, structural protein; 2.00A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 | Back alignment and structure |
---|
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A | Back alignment and structure |
---|
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* | Back alignment and structure |
---|
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
---|
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes} | Back alignment and structure |
---|
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* | Back alignment and structure |
---|
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, hormone processing, peptide modification; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
---|
>2x9z_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.30A {Streptococcus pneumoniae} | Back alignment and structure |
---|
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X | Back alignment and structure |
---|
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} | Back alignment and structure |
---|
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 | Back alignment and structure |
---|
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 | Back alignment and structure |
---|
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
---|
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
---|
>2xi9_A Ancillary protein 1; cell adhesion, GRAM positive pilus, intramolecular isopeptid internal thioester; 1.90A {Streptococcus pyogenes} PDB: 2xic_A 2xid_A | Back alignment and structure |
---|
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* | Back alignment and structure |
---|
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes} | Back alignment and structure |
---|
>2xi9_A Ancillary protein 1; cell adhesion, GRAM positive pilus, intramolecular isopeptid internal thioester; 1.90A {Streptococcus pyogenes} PDB: 2xic_A 2xid_A | Back alignment and structure |
---|
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} | Back alignment and structure |
---|
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, hormone processing, peptide modification; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
---|
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* | Back alignment and structure |
---|
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 | Back alignment and structure |
---|
>2x9z_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.30A {Streptococcus pneumoniae} | Back alignment and structure |
---|
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X | Back alignment and structure |
---|
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.3.7.1 | Back alignment and structure |
---|
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.3.7.1 | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 298 | hypothetical protein CLIBASIA_00215 [Candidatus Liberib | ||
d1h8la1 | 79 | Carboxypeptidase D C-terminal domain {Crested duck (Lop | 98.45 | |
d1nkga1 | 87 | Rhamnogalacturonase B, RhgB, middle domain {Aspergillus | 98.11 | |
d1vlfn1 | 79 | Transhydroxylase beta subunit, BthL, C-terminal domain | 97.72 | |
d1uwya1 | 107 | Carboxypeptidase M C-terminal domain {Human (Homo sapie | 97.67 | |
d1nkga1 | 87 | Rhamnogalacturonase B, RhgB, middle domain {Aspergillus | 97.56 | |
d1h8la1 | 79 | Carboxypeptidase D C-terminal domain {Crested duck (Lop | 97.43 | |
d1uwya1 | 107 | Carboxypeptidase M C-terminal domain {Human (Homo sapie | 96.77 | |
d1vlfn1 | 79 | Transhydroxylase beta subunit, BthL, C-terminal domain | 96.43 | |
d1cwva1 | 94 | Invasin {Yersinia pseudotuberculosis [TaxId: 633]} | 95.62 | |
d1xpna_ | 170 | Hypothetical protein PA1324 {Pseudomonas aeruginosa [Ta | 94.07 |
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} | Back information, alignment and structure |
---|
class: All beta proteins fold: Prealbumin-like superfamily: Carboxypeptidase regulatory domain-like family: Carboxypeptidase regulatory domain domain: Carboxypeptidase D C-terminal domain species: Crested duck (Lophonetta specularioides) [TaxId: 8836] Probab=98.45 E-value=2.5e-07 Score=62.44 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=62.8 Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCEEECCCCCEEEEEEEECCCC-EEEEEEEEEECCCCEEEEEEE Q ss_conf 8999983478863276089998389979742125212124487028999953882-467779997288504899974 Q gi|254780160|r 211 ITFKLVSEMGGEAVADTAWSILTASGDTVGESANASPSMVLSEGDYTVIARNKER-NYSREFSVLTGKSTIVEVLMR 286 (298) Q Consensus 211 ~~~~~v~~~~G~~l~ga~~~i~~~~g~~vt~~~G~~~~~~L~~G~Y~v~a~~~~~-~y~~~ftV~~g~~~~veV~~~ 286 (298) +..++.+..+|+||++|.+.+.+....+.++.+|.|. ..|+||+|++.++..++ ...+.+.|..++...+++.|+ T Consensus 2 I~G~V~d~~tg~pi~~a~V~v~~~~~~~~Td~~G~f~-~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~~~~~~~~~L~ 77 (79) T d1h8la1 2 IWGFVLDATDGRGILNATISVADINHPVTTYKDGDYW-RLLVQGTYKVTASARGYDPVTKTVEVDSKGGVQVNFTLS 77 (79) T ss_dssp EEEEEEETTTCSBCTTCEEEETTEEEEEECCTTSEEE-ECCCSEEEEEEEECTTBCCEEEEEEECSSCEEECCEEEC T ss_pred CEEEEEECCCCCCCCCEEEEEECCCCCEEECCCCCEE-EEEECCCEEEEEEEEEECCEEEEEEECCCCEEEEEEEEC T ss_conf 5999997999998487299981750117956878799-996066189999997766399999997898599999986 |
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} | Back information, alignment and structure |
---|
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} | Back information, alignment and structure |
---|
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} | Back information, alignment and structure |
---|
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} | Back information, alignment and structure |
---|
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
---|
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} | Back information, alignment and structure |
---|
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
---|
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 298 | hypothetical protein CLIBASIA_00215 [Candidatus Liberib | ||
3kpt_A_1-107 | 107 | Collagen adhesion protein; intramolecular amide bo | 98.64 | |
2pz4_A_122-239 | 118 | Protein GBS052; SPAB, GRAM-positive pilins, adhesi | 98.53 | |
3e8v_A_ | 82 | Possible transglutaminase-family protein; structur | 93.88 | |
3kpt_A_251-355 | 105 | Collagen adhesion protein; intramolecular amide bo | 98.63 | |
2ww8_A_1-142_722-733 | 154 | RRGA, cell WALL surface anchor family protein; IGG | 98.6 | |
2pz4_A_122-239 | 118 | Protein GBS052; SPAB, GRAM-positive pilins, adhesi | 98.51 | |
1h8l_A_300-380 | 81 | Carboxypeptidase GP180 residues 503-882; hydrolase | 98.44 | |
1nkg_A_245-337 | 93 | Rhamnogalacturonase B; polysaccharide lyase, carbo | 98.32 | |
1ti6_B_194-274 | 81 | Pyrogallol hydroxytransferase small subunit; molyb | 98.0 | |
3hr6_A_290-436 | 147 | SPAA, putative surface-anchored fimbrial subunit; | 97.92 | |
3kcp_A_155-252 | 98 | Cellulosomal-scaffolding protein A; dockerin, X-mo | 97.54 | |
1uwy_A_295-426 | 132 | Carboxypeptidase M; metallopeptidase, GPI-anchor, | 96.59 | |
2nsm_A_320-439 | 120 | Carboxypeptidase N catalytic chain; caroxypeptidas | 96.39 | |
3e8v_A_ | 82 | Possible transglutaminase-family protein; structur | 95.66 | |
3kpt_A_1-107 | 107 | Collagen adhesion protein; intramolecular amide bo | 98.62 | |
2ww8_A_734-893 | 160 | RRGA, cell WALL surface anchor family protein; IGG | 98.25 | |
1ti6_B_194-274 | 81 | Pyrogallol hydroxytransferase small subunit; molyb | 97.8 | |
2nsm_A_320-439 | 120 | Carboxypeptidase N catalytic chain; caroxypeptidas | 97.65 | |
1uwy_A_295-426 | 132 | Carboxypeptidase M; metallopeptidase, GPI-anchor, | 97.53 | |
1nkg_A_245-337 | 93 | Rhamnogalacturonase B; polysaccharide lyase, carbo | 97.48 | |
1h8l_A_300-380 | 81 | Carboxypeptidase GP180 residues 503-882; hydrolase | 96.82 | |
1cwv_A_1-104 | 104 | Invasin; integrin-binding protein, INV gene, struc | 95.77 | |
3kcp_A_155-252 | 98 | Cellulosomal-scaffolding protein A; dockerin, X-mo | 95.7 | |
2ww8_A_734-893 | 160 | RRGA, cell WALL surface anchor family protein; IGG | 98.61 | |
3kpt_A_251-355 | 105 | Collagen adhesion protein; intramolecular amide bo | 98.32 | |
2ww8_A_1-142_722-733 | 154 | RRGA, cell WALL surface anchor family protein; IGG | 98.25 | |
1cwv_A_105-202 | 98 | Invasin; integrin-binding protein, INV gene, struc | 94.94 | |
2pz4_A_1-121 | 121 | Protein GBS052; SPAB, GRAM-positive pilins, adhesi | 93.02 | |
3csl_A_ | 865 | HASR protein; outer membrane protein, beta-barrel, | 92.94 | |
1cwv_A_203-301 | 99 | Invasin; integrin-binding protein, INV gene, struc | 90.45 | |
3hr6_A_290-436 | 147 | SPAA, putative surface-anchored fimbrial subunit; | 98.03 | |
3hr6_A_1-145 | 145 | SPAA, putative surface-anchored fimbrial subunit; | 97.25 | |
1xpn_A_ | 170 | Hypothetical protein PA1324; B-barrel, structural | 95.49 | |
3hr6_A_1-145 | 145 | SPAA, putative surface-anchored fimbrial subunit; | 97.24 | |
1xpn_A_ | 170 | Hypothetical protein PA1324; B-barrel, structural | 95.53 |
>3kpt_A (A:1-107) Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} | Back alignment and structure |
---|
Probab=98.64 E-value=9.6e-08 Score=67.71 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=58.2 Q ss_pred CEEEEEEEECCCCCCCCCEEEEEEECCCCCE--EEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEE---EEEECCCC Q ss_conf 4379998615788777551899998389743--566750567513521067617999961577854454---48842886 Q gi|254780160|r 124 GGIRLYSIYKPGSPIVDDELTFSIYSNPNHK--ALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVST---VVKVEPGK 198 (298) Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~--~~~~t~~~~~~~~~~L~~G~Y~v~et~a~~~~~~~~---~i~V~~g~ 198 (298) +.+.+.+++.++. ++.+++|.|+..++.. ....++..|...+.+|++|.|+|+|+.+|.||.+.. .|+|..++ T Consensus 8 g~i~i~K~d~~g~--~l~GA~f~l~~~~~~~~~~~~tTd~~G~~~~~~l~~G~Y~l~E~~aP~GY~~~~~~~~~~v~~~~ 85 (107) T 3kpt_A 8 GAVDLIKTGVNEK--AXAGAVFSLFKKDGTEVKKELATDANGHIRVQGLEYGEYYFQETKAPKGYVIDPTKREFFVKNSG 85 (107) T ss_dssp EEEEEEEECGGGC--BCCSCEEEEEETTSCEEEEEEECCTTSEEEEEEEESEEEEEEEEECCTTBCCCCCCEEEEECSCE T ss_pred EEEEEEEECCCCC--CCCCCEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEECCCC T ss_conf 8999999899998--21882899998999999788999999869999808657999999899996133344013651576 Q ss_pred EEEEEEEECCCEEEEEEEECC Q ss_conf 378999934523899998347 Q gi|254780160|r 199 IIDVTIQNRAAKITFKLVSEM 219 (298) Q Consensus 199 ~~~~tv~~~~~~~~~~~v~~~ 219 (298) ...+++.+..+.+.+.+++.+ T Consensus 86 ~~~~~~~~~~~~i~i~K~d~~ 106 (107) T 3kpt_A 86 TINEDGTITSGTVVKXEVKNN 106 (107) T ss_dssp EECTTSSCEEECEEEEEEECC T ss_pred EEEEEEEECCCEEEEEEEEEC T ss_conf 056521042550456775411 |
>3e8v_A (A:) Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
---|
>3kpt_A (A:251-355) Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} | Back alignment and structure |
---|
>2ww8_A (A:1-142,A:722-733) RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
---|
>1h8l_A (A:300-380) Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} | Back alignment and structure |
---|
>1nkg_A (A:245-337) Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin; 1.50A {Aspergillus aculeatus} | Back alignment and structure |
---|
>1ti6_B (B:194-274) Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} | Back alignment and structure |
---|
>3hr6_A (A:290-436) SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* | Back alignment and structure |
---|
>3kcp_A (A:155-252) Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 2b59_B | Back alignment and structure |
---|
>1uwy_A (A:295-426) Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} | Back alignment and structure |
---|
>2nsm_A (A:320-439) Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, hormone processing, peptide modification; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
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>3e8v_A (A:) Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
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>3kpt_A (A:1-107) Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} | Back alignment and structure |
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>2ww8_A (A:734-893) RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
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>1ti6_B (B:194-274) Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} | Back alignment and structure |
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>2nsm_A (A:320-439) Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, hormone processing, peptide modification; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
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>1uwy_A (A:295-426) Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} | Back alignment and structure |
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>1nkg_A (A:245-337) Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin; 1.50A {Aspergillus aculeatus} | Back alignment and structure |
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>1h8l_A (A:300-380) Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} | Back alignment and structure |
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>1cwv_A (A:1-104) Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} | Back alignment and structure |
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>3kcp_A (A:155-252) Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 2b59_B | Back alignment and structure |
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>2ww8_A (A:734-893) RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
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>3kpt_A (A:251-355) Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} | Back alignment and structure |
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>2ww8_A (A:1-142,A:722-733) RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
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>1cwv_A (A:105-202) Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} | Back alignment and structure |
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>3csl_A (A:) HASR protein; outer membrane protein, beta-barrel, hemophore receptor, TONB BOX, heme, iron, metal-binding, secreted; HET: HEM; 2.70A {Serratia marcescens} PDB: 3csn_A 3ddr_A* | Back alignment and structure |
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>1cwv_A (A:203-301) Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} | Back alignment and structure |
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>3hr6_A (A:290-436) SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* | Back alignment and structure |
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>3hr6_A (A:1-145) SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* | Back alignment and structure |
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>1xpn_A (A:) Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
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>3hr6_A (A:1-145) SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* | Back alignment and structure |
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>1xpn_A (A:) Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
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