HHsearch alignment of GI: 254780160 and MMDB domain: 1nkg_A_245-337
>1nkg_A (A:245-337) Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin; 1.50A {Aspergillus aculeatus}
Probab=98.32 E-value=1.4e-06 Score=60.25 Aligned_cols=80 Identities=19% Similarity=0.105 Sum_probs=66.3
Q ss_pred CCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCEEECCCCCEEEEEEEECCCC-EEEEEEEEEECCCCEEEEEEE
Q ss_conf 5238999983478863276089998389979742125212124487028999953882-467779997288504899974
Q gi|254780160|r 208 AAKITFKLVSEMGGEAVADTAWSILTASGDTVGESANASPSMVLSEGDYTVIARNKER-NYSREFSVLTGKSTIVEVLMR 286 (298)
Q Consensus 208 ~~~~~~~~v~~~~G~~l~ga~~~i~~~~g~~vt~~~G~~~~~~L~~G~Y~v~a~~~~~-~y~~~ftV~~g~~~~veV~~~ 286 (298)
.+.+.++ |.+..|+|+++|.+.+.+......++.+|.|.+..+++|+|.+.++..++ ..++.+++..+++..+.+.++
T Consensus 13 ~~~i~G~-V~d~~g~pi~~a~V~i~~~~~~~~Td~~G~f~l~~~~~g~y~l~~s~~Gy~~~~~~i~~~~~~~~~i~l~l~ 91 (93)
T 1nkg_A 13 RGKVAGT-ASGADSSMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSVTVSAGSTTTKNISGS 91 (93)
T ss_dssp CBEEEEE-EESSCTTSCEEEEEECSSCEEEEECCTTCEEECCCBCSEEEEEEEEETTEEEEEEEEEECTTCEEECCEECC
T ss_pred CCEEEEE-EEECCCCCCCEEEEECCCEEEEEEECCCCCEECCCCCCCEEEEEEEECCEEEEEEEEEECCCCCEEEEEECC
T ss_conf 7279999-970488887157872375388999258886774771255168999968718886469985686245435616
Q ss_pred CH
Q ss_conf 10
Q gi|254780160|r 287 QK 288 (298)
Q Consensus 287 ~~ 288 (298)
.|
T Consensus 92 ~e 93 (93)
T 1nkg_A 92 VK 93 (93)
T ss_dssp CC
T ss_pred CC
T ss_conf 88