HHsearch alignment of GI: 254780160 and MMDB domain: 1nkg_A_245-337

>1nkg_A (A:245-337) Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin; 1.50A {Aspergillus aculeatus}
Probab=97.48  E-value=0.00072  Score=42.64  Aligned_cols=74  Identities=19%  Similarity=0.131  Sum_probs=54.0

Q ss_pred             CCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEEEEEE-CCCCCEEEEEEECCCCE
Q ss_conf             23279999986887753467599999538887620588982468566302267218999961-57775278998068613
Q gi|254780160|r   36 AQRITCEARLTENSTSIDSGVSWHIFDSISNKKNTLSTTKKIIGGKVSFDLFPGDYLISASF-GHVGVVKKITVSSKEKN  114 (298)
Q Consensus        36 ~~~i~l~a~~~~~~~~~~~G~~~~vy~~~~~~~g~~~~tt~~~G~~~~~~L~pG~Y~v~~s~-g~~~~~~~vtV~~~~~~  114 (298)
                      .+...++.+..+..+.+++||.+++.    +.  ....+|+.+|.+....++||+|.|.+++ ||....+.+++..+...
T Consensus        11 ~~~~~i~G~V~d~~g~pi~~a~V~i~----~~--~~~~~Td~~G~f~l~~~~~g~y~l~~s~~Gy~~~~~~i~~~~~~~~   84 (93)
T 1nkg_A           11 SGRGKVAGTASGADSSMDWVVHWYND----AA--QYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSVTVSAGSTT   84 (93)
T ss_dssp             GGCBEEEEEEESSCTTSCEEEEEECS----SC--EEEEECCTTCEEECCCBCSEEEEEEEEETTEEEEEEEEEECTTCEE
T ss_pred             CCCCEEEEEEEECCCCCCCEEEEECC----CE--EEEEEECCCCCEECCCCCCCEEEEEEEECCEEEEEEEEEECCCCCE
T ss_conf             67727999997048888715787237----53--8899925888677477125516899996871888646998568624


Q ss_pred             E
Q ss_conf             6
Q gi|254780160|r  115 Q  115 (298)
Q Consensus       115 ~  115 (298)
                      .
T Consensus        85 ~   85 (93)
T 1nkg_A           85 T   85 (93)
T ss_dssp             E
T ss_pred             E
T ss_conf             5