HHsearch results for GI: 254780160 and protein with PDBid: 1cwv_A
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=97.79 E-value=0.0018 Score=39.12 Aligned_cols=226 Identities=14% Similarity=0.065 Sum_probs=114.2
Q ss_pred EEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE--CCCCCEEEEEEEECCCCCEEEEEEECCCCE-
Q ss_conf 27999998688775346759999953888762058898246856630--226721899996157775278998068613-
Q gi|254780160|r 38 RITCEARLTENSTSIDSGVSWHIFDSISNKKNTLSTTKKIIGGKVSF--DLFPGDYLISASFGHVGVVKKITVSSKEKN- 114 (298)
Q Consensus 38 ~i~l~a~~~~~~~~~~~G~~~~vy~~~~~~~g~~~~tt~~~G~~~~~--~L~pG~Y~v~~s~g~~~~~~~vtV~~~~~~- 114 (298)
.+++++++.+..++++.|+...+-.............++++|..... ...+|.|.+.++++.......+.+..+...
T Consensus 27 ~~tvtvtv~D~~Gnpv~~~~Vt~t~~~~~~~~~~t~~Td~~G~~tvt~t~~~~Gt~tvtat~~g~~~t~~~~~~~~~~~~ 106 (492)
T 1cwv_A 27 AITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTIAA 106 (492)
T ss_dssp CEEEEEEEECTTSCBCCSCEEEEECCTTCBSCEEEEECCTTSEEEEEEBCSSCEEEEEEEEETTEEEEEEEEEECCCBCG
T ss_pred CEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEECCCCEEEEEEEECCCCEEEEEEEEECCEECCEEEEEEECCCCC
T ss_conf 67999999989989978988999978971214441241899799999957775699999998976210335898466643
Q ss_pred ---EEEE-----EECCCC--EEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCC---CEEEEECCCCEEEEEEE
Q ss_conf ---6787-----513664--3799986157887775518999983897435667505675---13521067617999961
Q gi|254780160|r 115 ---QKQV-----FILNAG--GIRLYSIYKPGSPIVDDELTFSIYSNPNHKALLITDKVRS---GTLVRLGTNNYQITSHY 181 (298)
Q Consensus 115 ---~~~~-----~~~~ag--~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~t~~~~~---~~~~~L~~G~Y~v~et~ 181 (298)
.... ...... .+.....+..+.+++...+.|..- ... ....++...+ ..+....+|.|.+..+.
T Consensus 107 ~~~~~~~~~~~~~a~g~~~~tvt~tv~D~~Gn~v~~~~V~~~~~--~~~-~~~~t~~~~G~~t~t~t~~~~G~~~vt~t~ 183 (492)
T 1cwv_A 107 DKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTT--LGN-MGVITDHNDGTYSAPLTSTTLGVATVTVKV 183 (492)
T ss_dssp GGCEEEEESSEEETTSSCCEEEEEECBBTTSCBCCSCCEEEEES--SSE-ECCCEECSSSEEEEEEECSSCEEEEEEEEE
T ss_pred CEEEEEECCCCEECCCCCEEEEEEEEECCCCCCCCCCCCEEECC--CCC-CEEEEECCCCEEEEEEEECCCCEEEEEEEE
T ss_conf 00147626762131463107999999868998345851001215--674-103676488607888840446347899998
Q ss_pred CCCCCE-EEEEEEECCCCE-----EEEEEEE------CCCEEEEEE-EECCCCCCCCCEEEEEECCCCC-----EEEECC
Q ss_conf 577854-454488428863-----7899993------452389999-8347886327608999838997-----974212
Q gi|254780160|r 182 GKYNAI-VSTVVKVEPGKI-----IDVTIQN------RAAKITFKL-VSEMGGEAVADTAWSILTASGD-----TVGESA 243 (298)
Q Consensus 182 a~~~~~-~~~~i~V~~g~~-----~~~tv~~------~~~~~~~~~-v~~~~G~~l~ga~~~i~~~~g~-----~vt~~~ 243 (298)
...... ....+.+..+.. ..+.... ......+++ +.+..|.++.+........++. .+++..
T Consensus 184 ~~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~tvtvtv~D~~gn~v~~~~v~~~~~~g~~~~~~~~t~~~ 263 (492)
T 1cwv_A 184 DGAAFSVPSVTVNFTADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQP 263 (492)
T ss_dssp TTEEEEEEEEEEEEECCSSCCTTTCEEEESCSEEETTSCCCEEEEEECBCTTSCBCCSCCSEEEEEEESCCEECCCEECS
T ss_pred CCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 58642000368999503433321124672366144177320579999814688713574479980699537777898899
Q ss_pred CC--EEECCCCCEEEEEEEECCCCE
Q ss_conf 52--121244870289999538824
Q gi|254780160|r 244 NA--SPSMVLSEGDYTVIARNKERN 266 (298)
Q Consensus 244 G~--~~~~~L~~G~Y~v~a~~~~~~ 266 (298)
|. +......+|.+++.+......
T Consensus 264 g~~t~t~t~~~~G~~tvtat~~~~~ 288 (492)
T 1cwv_A 264 DSYTATVVGNSVGDVTITPQVDTLI 288 (492)
T ss_dssp SCEEEEEECSSCEEEEEEEEETTEE
T ss_pred CEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 8699999766420399999991621