RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780160|ref|YP_003064573.1| hypothetical protein
CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62]
         (298 letters)



>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
          Length = 484

 Score = 30.5 bits (69), Expect = 0.53
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 60  IFDSISNKKNTLSTTKKIIGGKVS 83
           I DS+S+ ++T     +I+GGK  
Sbjct: 222 IVDSLSSSRDTKVAVNRIVGGKWG 245


>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 237

 Score = 29.1 bits (65), Expect = 1.4
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 176 QITSHYGKYNAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEMGGEAVA 225
           ++++HYGK  A+    + +  G+I+ +   N A K T  L+  + G+  A
Sbjct: 10  KVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTT--LLGTLCGDPRA 57


>gnl|CDD|184710 PRK14498, PRK14498, putative molybdopterin biosynthesis protein
           MoeA/LysR substrate binding-domain-containing protein;
           Provisional.
          Length = 633

 Score = 28.3 bits (64), Expect = 2.4
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 12/46 (26%)

Query: 186 AIVST---VV----KVEPGKIIDVTIQNRAAKITFKLVSEMGGEAV 224
            I+ST   +V     ++PGKI DV     AA      V E GGE V
Sbjct: 190 GIISTGDELVEPGEPLKPGKIYDVNSYTLAA-----AVEEAGGEPV 230


>gnl|CDD|182968 PRK11107, PRK11107, hybrid sensory histidine kinase BarA;
           Provisional.
          Length = 919

 Score = 27.9 bits (63), Expect = 3.3
 Identities = 9/12 (75%), Positives = 11/12 (91%)

Query: 211 ITFKLVSEMGGE 222
           IT KLV+EMGG+
Sbjct: 488 ITQKLVNEMGGD 499


>gnl|CDD|183852 PRK13030, PRK13030, 2-oxoacid ferredoxin oxidoreductase;
           Provisional.
          Length = 1159

 Score = 27.6 bits (62), Expect = 4.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 6/37 (16%)

Query: 266 NYSRE----FSVLTGKSTIVEVLMRQKRMDKNGQHNT 298
            Y+      F  LTG   +V +L+ Q+R D+    NT
Sbjct: 10  RYTATRGRIF--LTGTQALVRLLLMQRRRDRARGLNT 44


>gnl|CDD|164786 PHA00202, PHA00202, DNA replication initiation protein.
          Length = 388

 Score = 26.9 bits (59), Expect = 6.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 27  KGKGKRVVDAQRITCEARLTENSTSIDSGVSWHIFDSISNKK 68
           +G+G  +V  +RIT    L E +T + S  S  I+  I NKK
Sbjct: 223 RGQGPSMVPHKRITSIGALMEEATIVGSRSS-AIYWRIYNKK 263


>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
           (MRP).  This model describes multi drug
           resistance-associated protein (MRP) in eukaryotes. The
           multidrug resistance-associated protein is an integral
           membrane protein that causes multidrug resistance when
           overexpressed in mammalian cells. It belongs to ABC
           transporter superfamily. The protein topology and
           function was experimentally demonstrated by epitope
           tagging and immunofluorescence. Insertion of tags in the
           critical regions associated with drug efflux, abrogated
           its function. The C-terminal domain seem to highly
           conserved.
          Length = 1522

 Score = 26.8 bits (59), Expect = 7.7
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 24  NISKGKGKRVVDAQRITCEAR---LTENSTSIDSGVSWHIFDSISNKKNTLST-TKKIIG 79
           N+S G+ +RV  A+ +   A      +  +++D+ V  HIF+ +   +  L   T+ ++ 
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819

Query: 80  GKVSFDLFPGDYLISASFGHV 100
             +S+ L   D +I  S G +
Sbjct: 820 HGISY-LPQVDVIIVMSGGKI 839


>gnl|CDD|148061 pfam06229, FRG1, FRG1-like family.  The human FRG1 gene maps to
           human chromosome 4q35 and has been identified as a
           candidate for facioscapulohumeral muscular dystrophy.
           Currently, the function of FRG1 is unknown.
          Length = 189

 Score = 26.6 bits (59), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 166 TLVRLGTNNYQITSHYGKY 184
           T V++G       S YGKY
Sbjct: 31  TAVKVGDEKISFKSGYGKY 49


>gnl|CDD|185499 PTZ00174, PTZ00174, phosphomannomutase; Provisional.
          Length = 247

 Score = 26.5 bits (59), Expect = 9.6
 Identities = 8/11 (72%), Positives = 11/11 (100%)

Query: 78  IGGKVSFDLFP 88
           IGG++SFD+FP
Sbjct: 174 IGGQISFDVFP 184


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,526,778
Number of extensions: 276613
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 22
Length of query: 298
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 205
Effective length of database: 3,984,929
Effective search space: 816910445
Effective search space used: 816910445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.9 bits)