RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780160|ref|YP_003064573.1| hypothetical protein
CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62]
(298 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 54.2 bits (130), Expect = 4e-08
Identities = 59/362 (16%), Positives = 108/362 (29%), Gaps = 161/362 (44%)
Query: 4 SF-SSYAKAENMHT-TSTLLNNN-ISKGKGKRVV----DAQRITCEARLTENSTSIDSGV 56
F + Y + ++H + LL N + K K ++ A+ + + + S S
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA-KRPFDKKSNSA---- 144
Query: 57 SWHIFDSISNKKNTLSTTKKIIGGKVSFDLFPGDYLISASFGHVGVVKKITVSSKEKNQK 116
+F ++ L I GG+ + D DY +E
Sbjct: 145 ---LFRAVGEGNAQLVA---IFGGQGNTD----DYF------------------EE---- 172
Query: 117 QVFILNAGGIR-LYSIYKPGSPIVDD----------EL------TFSIYS---------- 149
+R LY Y +V D EL +++
Sbjct: 173 ---------LRDLYQTYH---VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 150 NPNH---KALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIID----- 201
NP++ K L++ + S L+ + Q+ HY + + ++ PG++
Sbjct: 221 NPSNTPDKDYLLSIPI-SCPLIGVI----QLA-HY----VVTAKLLGFTPGELRSYLKGA 270
Query: 202 -------VTIQNRAAKITFKLVSEMGGEAVADTAW-SILTASGDTV------G-ESANAS 246
VT A I A D+ W S + + G A
Sbjct: 271 TGHSQGLVT----AVAI-----------AETDS-WESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 247 PSMVLSEGDYTVIA---RNKE---------RNYSREFSVLTGKSTIVEVLMRQKRMDKNG 294
P+ L +++ N E N ++E +V Q ++K
Sbjct: 315 PNTSLPP---SILEDSLENNEGVPSPMLSISNLTQE-----------QV---QDYVNKTN 357
Query: 295 QH 296
H
Sbjct: 358 SH 359
Score = 29.1 bits (65), Expect = 1.2
Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 48/140 (34%)
Query: 81 KVSFDL-F-PGDYLISASFGH----VGVVKKITVSSKEKNQKQVFILNAG--GIRLYSIY 132
K+ F F P +++ F H V I + K NA I +Y +
Sbjct: 413 KLKFSNRFLP----VASPF-HSHLLVPASDLI----NKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 133 ------KPGSPIVDDELTFSIYSNPNH--KAL-------------------LITDKVRSG 165
I + + I P ++T + + G
Sbjct: 464 DGSDLRVLSGSISER-IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 166 TLVRL---GTNNYQITSHYG 182
T VR+ GT + YG
Sbjct: 523 TGVRVIVAGTLDINPDDDYG 542
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic filament,
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 30.4 bits (66), Expect = 0.58
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 16/143 (11%)
Query: 132 YKPGSPIVDDELTFSIYSNPNHKALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVSTV 191
+K + + + I S ++ I + + +G + ++ G + S
Sbjct: 419 HKDKRELRSGK-KYKIMSENFLTSIHILNVDSA----DIGEYQCKASNDVGSDTCVGSIT 473
Query: 192 VKVEPGKIIDVTIQNRAAKITFKLVSEMGGEAVADTAW-----SILTASGDTVGESANAS 246
+K P + ++ + +L + + G AW I+ S + +
Sbjct: 474 LKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI 533
Query: 247 PSMVLS------EGDYTVIARNK 263
++ S G YT +N+
Sbjct: 534 ATLQFSRAEPANAGKYTCQIKNE 556
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy,
FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR
{Mus musculus}
Length = 155
Score = 28.7 bits (64), Expect = 1.6
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 166 TLVRLGTNNYQITSHYGKY------NAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEM 219
T V+L + + S YGKY +V + P + + Q+ L++
Sbjct: 65 TAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDG----KMALLASN 120
Query: 220 GGEAVADTAWSILTASGDTVGES 242
+ A + A T GE
Sbjct: 121 SCFIRCNEAGD-IEAKNKTAGEE 142
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 28.7 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 198 KIIDVTIQNRAAKITFKLVSEMGGEAVA 225
I D+ N A+++ KLV+E+G +A
Sbjct: 1018 LIYDLHQINPEAQVSVKLVAEIGIGTIA 1045
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta
sandwich, duplication of A half-domain; 2.01A
{Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Length = 221
Score = 27.6 bits (61), Expect = 3.6
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 13 NMHTTSTLLNNNISKGKGKRVVDAQR------ITCEARLTENSTSIDSGVSW--HIFDSI 64
++ T + +NI G + QR + ++ + I++GV + H+
Sbjct: 11 DLGTENLYFQSNIGSGSNAMIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLF 70
Query: 65 S 65
+
Sbjct: 71 T 71
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 27.2 bits (59), Expect = 4.8
Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 16/168 (9%)
Query: 121 LNAGGIRLYSIYKPGSPIVDDELTFSIYSNPNHKALLITDKVRSGTLVRLGTNNYQITSH 180
+ G +R+ G P+ E+ + K V + ++ ++I
Sbjct: 76 IEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGT 135
Query: 181 YGKYNAIVSTVVKVEPGKIIDVTIQNRAAK---ITFKLVSEMGGEAVADTAWSILTASGD 237
N I T ++ + D K +T+ G IL G
Sbjct: 136 EKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG-----LEGYILYKDGK 190
Query: 238 TVGESANASPSMV---LSEG---DYTVIARNK--ERNYSREFSVLTGK 277
V E S L+ ++ + A+ E + ++ T +
Sbjct: 191 KVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, hormone
processing, peptide modification; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 26.3 bits (57), Expect = 7.6
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 80 GKVSFDLFPGDYLISASF-GHVGVVKKITVSSKEKNQKQVFILNAGGIRL 128
G L PG Y +SA+ G+ +TV E F L ++
Sbjct: 355 GDYFRLLLPGIYTVSATAPGYDPETVTVTVGPAE-PTLVNFHLKRSIPQV 403
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Length = 738
Score = 26.5 bits (58), Expect = 8.1
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 3/119 (2%)
Query: 104 KKITVSSKEKNQKQVFILNAGGIRLYSIYKPGSPIVDD-ELTFSIYSNPNHKALLITDKV 162
+ ++S + N F +++ G Y + ++ L + N +
Sbjct: 21 MQQKLTSPDNNLVMTFQVDSKGAPTYELTYKNKVVIKPSTLGLELKKEDNTRTDFDWVDR 80
Query: 163 RSGTLVRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEMGG 221
R T + TN Y A + G+ + I+N ++ L M
Sbjct: 81 RDLTKLDSKTNLYDGFEVKDTQTATFDETWQPVWGE--EKEIRNHYNELAVTLYQPMND 137
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron
transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A
{Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2
f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Length = 289
Score = 26.2 bits (58), Expect = 9.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 230 SILTASGDTVGESANASPSMVLSEGD 255
SI T SG TV ++ A P +++SEG
Sbjct: 198 SIQTDSGKTVVDTIPAGPELIVSEGQ 223
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.313 0.129 0.353
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,378,483
Number of extensions: 104911
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 17
Length of query: 298
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 206
Effective length of database: 3,462,782
Effective search space: 713333092
Effective search space used: 713333092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.8 bits)