HHsearch alignment for GI: 254780161 and conserved domain: PRK10888
>PRK10888 octaprenyl diphosphate synthase; Provisional.
Probab=92.41 E-value=0.83 Score=24.51 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 99999999853058--888998999998644337999999984---03430---345576688999999899887224--
Q gi|254780161|r 117 FLDMIEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL-- 186 (299)
Q Consensus 117 l~~lid~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi-- 186 (299)
T Consensus 139 ~~~~~eGe~~q~~~~~~~~~~~~~yl~~i~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~AFQI~DDlLD~~g 218 (323)
T PRK10888 139 VNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999688999985427899999999999999999999999999987099999999999999999999999997520247
Q ss_pred ---------HHHHHCCCCCCCHHHHHHCCCCHHH-H----HCCCCCH-HHHH---------HHHHHHHHHHHHHHHHHHH
Q ss_conf ---------7876348873467899963999778-5----2468998-7999---------9999999999999999964
Q gi|254780161|r 187 ---------PIHYHRGQLYFPLDILGAVGLDRES-F----LSGQNSD-RISL---------AIKIFAELGLKYLFKAREE 242 (299)
Q Consensus 187 ---------~~d~~~gr~yLP~~~l~~~gv~~e~-l----~~~~~~~-~~~~---------~~~~~~~~A~~~l~~a~~~ 242 (299)
T Consensus 219 d~~~~GK~~g~Dl~eGk~TlPvi~Al~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~~~gai~~a~~~a~~~~~~A~~~ 298 (323)
T PRK10888 219 DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAA 298 (323)
T ss_pred CHHHHCCCCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87886899651342586479999999849998999999987478849999999999998695999999999999999999
Q ss_pred HHHCCHHH-HHHH
Q ss_conf 45289999-9999
Q gi|254780161|r 243 MRYILPDV-FPAF 254 (299)
Q Consensus 243 ~~~lp~~~-r~~~ 254 (299)
T Consensus 299 L~~lp~s~~r~~L 311 (323)
T PRK10888 299 LQVLPDTPWREAL 311 (323)
T ss_pred HHHCCCCHHHHHH
T ss_conf 8708997899999