>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.

Probab=100.00 E-value=0 Score=440.51 Aligned_cols=264 Identities=20% Similarity=0.330 Sum_probs=252.9 Q ss_pred HHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 85281387998859988806899999999999776036788258999999999999977401789868989999999998 Q gi|254780161|r 29 RDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVR 108 (299) Q Consensus 29 r~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~ 108 (299) T Consensus 2 a~~g~sFy~A~~lLp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~L~~w~~~l~~~~~g~---~~~pv~~al~~~~~ 78 (266) T TIGR03465 2 AASGSSFYYGMRLLPPERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLYAGA---PSHPVARALADPAR 78 (266) T ss_pred CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHH T ss_conf 999871999998789999999999999999999988769984899999999999999986699---99899999999999 Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 61899899999999998530588889989999986443379999999840343034557668899999989988722478 Q gi|254780161|r 109 QYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPI 188 (299) Q Consensus 109 ~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~ 188 (299) T Consensus 79 ~~~l~~~~~~~li~g~~~Dl~~~~~~t~~~L~~Y~~~vA~~vg~m~~~ilg~~~~~-~~~~A~~lG~A~QltNilRDv~e 157 (266) T TIGR03465 79 RFDLPQEDFLEVIDGMEMDLEQTRYPDFAELDLYCDRVAGAVGRLSARIFGATDAR-TLEYAHHLGRALQLTNILRDVGE 157 (266) T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 83999899999999998557899999999999999986369999999880899757-89999999999999999997188 Q ss_pred HHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHH Q ss_conf 763488734678999639997785246899879999999999999999999964452899999-9999999999999999 Q gi|254780161|r 189 HYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVF-PAFIPVSITESVLKHA 267 (299) Q Consensus 189 d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r-~~~l~~~~~~~~L~~l 267 (299) T Consensus 158 D~~~gR~YLP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~~v~~aa~~y~~il~~i 237 (266) T TIGR03465 158 DARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAARAMAAIYRALLDEI 237 (266) T ss_pred HHHCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99789975779999886999888734788878999999999999999999997586489988999999999999999999 Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 96888724589868966799999999862 Q gi|254780161|r 268 QNHGFKIVSHSHTPNQLVRPWYMLSSSIK 296 (299) Q Consensus 268 ~~~~~~v~~~~~~~~~~~~~~~l~r~~~~ 296 (299) T Consensus 238 ~~~~~~v~~~R~~ls~~~Kl~l~~r~~~r 266 (266) T TIGR03465 238 EADGFQVLRQRVSLTPLRKLWIALRTWLR 266 (266) T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 86799768889926999999999999829

HHsearch alignment for GI: 254780161 and conserved domain: TIGR03465