Query gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 299
No_of_seqs 140 out of 1367
Neff 8.3
Searched_HMMs 39220
Date Sun May 22 22:39:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780161.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03465 HpnD squalene syntha 100.0 0 0 440.5 33.1 264 29-296 2-266 (266)
2 TIGR03464 HpnC squalene syntha 100.0 0 0 429.4 32.6 262 30-295 3-266 (266)
3 cd00683 Trans_IPPS_HH Trans-Is 100.0 0 0 424.8 32.0 263 22-286 1-265 (265)
4 pfam00494 SQS_PSY Squalene/phy 100.0 0 0 405.1 30.4 258 28-285 1-262 (262)
5 COG1562 ERG9 Phytoene/squalene 100.0 0 0 388.0 30.9 281 17-299 6-288 (288)
6 KOG4411 consensus 100.0 5.6E-44 0 317.1 28.6 280 19-299 9-292 (292)
7 TIGR01559 squal_synth farnesyl 99.9 9.3E-23 2.4E-27 173.3 6.2 263 20-283 2-295 (350)
8 cd00867 Trans_IPPS Trans-Isopr 99.7 1E-15 2.6E-20 125.5 16.5 192 34-253 1-226 (236)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.6 1.7E-14 4.2E-19 117.4 13.8 207 35-247 2-228 (243)
10 KOG1459 consensus 99.6 9.6E-14 2.5E-18 112.2 16.7 271 19-291 31-318 (413)
11 KOG1459 consensus 99.6 4.7E-14 1.2E-18 114.3 12.1 261 22-295 134-400 (413)
12 cd00685 Trans_IPPS_HT Trans-Is 95.5 0.2 5.1E-06 28.7 11.5 135 116-250 116-283 (298)
13 PRK10581 geranyltranstransfera 95.4 0.23 5.9E-06 28.3 12.6 122 117-250 151-281 (299)
14 PRK10888 octaprenyl diphosphat 92.4 0.83 2.1E-05 24.5 14.7 138 117-254 139-311 (323)
15 KOG0776 consensus 91.9 0.95 2.4E-05 24.1 10.2 115 142-256 237-376 (384)
16 COG0142 IspA Geranylgeranyl py 86.9 2.2 5.7E-05 21.6 14.6 133 115-247 141-302 (322)
17 pfam00348 polyprenyl_synt Poly 81.1 3.9 1E-04 20.0 7.9 78 122-199 120-215 (260)
18 TIGR02748 GerC3_HepT heptapren 77.4 5 0.00013 19.2 6.4 125 130-254 152-313 (325)
19 cd00868 Terpene_cyclase_C1 Ter 77.2 5.1 0.00013 19.2 19.4 202 37-251 37-270 (284)
20 cd00687 Terpene_cyclase_nonpla 71.1 7.1 0.00018 18.2 21.3 198 36-248 45-270 (303)
21 KOG2911 consensus 66.8 8.7 0.00022 17.6 5.3 81 39-126 10-90 (439)
22 TIGR02749 prenyl_cyano solanes 64.2 9.7 0.00025 17.3 6.6 207 17-232 10-267 (325)
23 PRK10490 sensor protein KdpD; 51.1 16 0.00041 15.8 4.0 22 111-132 444-465 (895)
24 TIGR02684 dnstrm_HI1420 probab 49.6 17 0.00043 15.7 5.8 64 145-227 12-80 (91)
25 KOG2582 consensus 48.5 17 0.00044 15.6 7.0 99 43-147 91-190 (422)
26 pfam03936 Terpene_synth_C Terp 46.5 19 0.00048 15.4 16.2 171 37-211 51-253 (270)
27 CHL00151 preA prenyl transfera 45.0 20 0.0005 15.2 12.8 118 119-248 145-271 (288)
28 COG1575 MenA 1,4-dihydroxy-2-n 44.8 8.6 0.00022 17.6 0.7 22 178-199 193-214 (303)
29 pfam05389 MecA Negative regula 41.0 23 0.00058 14.8 4.1 11 78-88 39-49 (212)
30 cd00684 Terpene_cyclase_plant_ 35.6 27 0.00069 14.3 20.5 203 37-252 271-505 (542)
31 PRK13387 1,4-dihydroxy-2-napht 29.4 24 0.00061 14.7 1.0 25 175-199 203-227 (317)
32 PRK02899 adaptor protein; Prov 27.7 36 0.00093 13.4 4.2 22 78-99 39-60 (199)
33 KOG2116 consensus 27.0 38 0.00096 13.3 4.1 49 249-298 581-629 (738)
34 KOG0781 consensus 26.2 39 0.00099 13.2 9.6 178 77-276 277-471 (587)
35 PRK00326 cell division protein 24.1 30 0.00076 14.0 0.7 27 191-217 87-113 (147)
36 KOG0808 consensus 24.1 38 0.00097 13.3 1.2 21 253-273 357-380 (387)
37 KOG4825 consensus 22.9 45 0.0011 12.8 8.3 198 39-249 403-611 (666)
38 PRK06080 1,4-dihydroxy-2-napht 21.8 47 0.0012 12.7 2.0 27 173-199 186-212 (300)
No 1
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=100.00 E-value=0 Score=440.51 Aligned_cols=264 Identities=20% Similarity=0.330 Sum_probs=252.9
Q ss_pred HHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 85281387998859988806899999999999776036788258999999999999977401789868989999999998
Q gi|254780161|r 29 RDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVR 108 (299)
Q Consensus 29 r~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~ 108 (299)
..|++|||+|++|+|+++|+++++||||||++|||+|+++++..++++|+||++.+++++.|. +.|||..+|.++++
T Consensus 2 a~~g~sFy~A~~lLp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~L~~w~~~l~~~~~g~---~~~pv~~al~~~~~ 78 (266)
T TIGR03465 2 AASGSSFYYGMRLLPPERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLYAGA---PSHPVARALADPAR 78 (266)
T ss_pred CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHH
T ss_conf 999871999998789999999999999999999988769984899999999999999986699---99899999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 61899899999999998530588889989999986443379999999840343034557668899999989988722478
Q gi|254780161|r 109 QYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPI 188 (299)
Q Consensus 109 ~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~ 188 (299)
++++|++++.++|+|+++|++.++|+|++||+.||++|||+||+|++.|+|..+.. ..+.++++|+|+|+||||||+++
T Consensus 79 ~~~l~~~~~~~li~g~~~Dl~~~~~~t~~~L~~Y~~~vA~~vg~m~~~ilg~~~~~-~~~~A~~lG~A~QltNilRDv~e 157 (266)
T TIGR03465 79 RFDLPQEDFLEVIDGMEMDLEQTRYPDFAELDLYCDRVAGAVGRLSARIFGATDAR-TLEYAHHLGRALQLTNILRDVGE 157 (266)
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 83999899999999998557899999999999999986369999999880899757-89999999999999999997188
Q ss_pred HHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 763488734678999639997785246899879999999999999999999964452899999-9999999999999999
Q gi|254780161|r 189 HYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVF-PAFIPVSITESVLKHA 267 (299)
Q Consensus 189 d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r-~~~l~~~~~~~~L~~l 267 (299)
|+++||+|||.|+|.+||++++++.++..+++++.++++++++|+.||.+|+.+++.+|++++ ++.+++.+|+.+|++|
T Consensus 158 D~~~gR~YLP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~~v~~aa~~y~~il~~i 237 (266)
T TIGR03465 158 DARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAARAMAAIYRALLDEI 237 (266)
T ss_pred HHHCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99789975779999886999888734788878999999999999999999997586489988999999999999999999
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 96888724589868966799999999862
Q gi|254780161|r 268 QNHGFKIVSHSHTPNQLVRPWYMLSSSIK 296 (299)
Q Consensus 268 ~~~~~~v~~~~~~~~~~~~~~~l~r~~~~ 296 (299)
+++||++|++|+.+++++|+|++||+.+|
T Consensus 238 ~~~~~~v~~~R~~ls~~~Kl~l~~r~~~r 266 (266)
T TIGR03465 238 EADGFQVLRQRVSLTPLRKLWIALRTWLR 266 (266)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 86799768889926999999999999829
No 2
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=100.00 E-value=0 Score=429.41 Aligned_cols=262 Identities=15% Similarity=0.161 Sum_probs=247.1
Q ss_pred HHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 52813879988599888068999999999997760367882-58999999999999977401789868989999999998
Q gi|254780161|r 30 DIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNP-ITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVR 108 (299)
Q Consensus 30 ~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~-~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~ 108 (299)
.|++|||+|++|||+++|++++++|||||++|||+|+...+ .....+|+||++.+++.+.+. +.|||..+|.++++
T Consensus 3 ~H~knF~~As~lLP~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~~L~~~~~~l~~~~~~~---~~~pv~~aL~~~~~ 79 (266)
T TIGR03464 3 AHYENFPVASLLLPARLRAPIHAVYAFARTADDIADEGDASPEERLALLDDFRAELDAIYSGE---PAAPVFVALARTVQ 79 (266)
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHH
T ss_conf 841439999987899999999999999999988875789888999999999999998754699---99899999999998
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 61899899999999998530588889989999986443379999999840343034557668899999989988722478
Q gi|254780161|r 109 QYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPI 188 (299)
Q Consensus 109 ~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~ 188 (299)
++++|.+++.++|+|+++|++.++|+|++||+.||++|||+||+|++.++|.++.+. ...+.++|.|+|+||||||+++
T Consensus 80 ~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~~~~~i~g~~~~~~-~~~a~~lG~AlQltNilRDi~e 158 (266)
T TIGR03464 80 RHGLPIEPFLDLLDAFRQDVVVTRYATWAELLDYCRRSANPVGRLVLDLYGASDPEN-VALSDAICTALQLINFWQDVGK 158 (266)
T ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 829997999999999884146799999999999999963899999999827898889-9999999799999999998587
Q ss_pred HHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 763488734678999639997785246899879999999999999999999964452899999999-9999999999999
Q gi|254780161|r 189 HYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAF-IPVSITESVLKHA 267 (299)
Q Consensus 189 d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~-l~~~~~~~~L~~l 267 (299)
|+++||||||.++|.+||++++++.++..++++++++++++++|+.||.+|..++..+|++++.++ +++.+|..+|++|
T Consensus 159 D~~~gRiYLP~e~L~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~y~~a~~~~~~lp~r~r~~~~~~~~~y~~il~~I 238 (266)
T TIGR03464 159 DLRKGRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARIPGRLGLELALIVRGGLRILEKI 238 (266)
T ss_pred HHHCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99879856869999885999999836789989999999999999999998988487599877799999999999999999
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9688872458986896679999999986
Q gi|254780161|r 268 QNHGFKIVSHSHTPNQLVRPWYMLSSSI 295 (299)
Q Consensus 268 ~~~~~~v~~~~~~~~~~~~~~~l~r~~~ 295 (299)
++++|++|++|+.+|+++|.|++||+.|
T Consensus 239 ~~~~~~~~~~R~~ls~~~Kl~ll~ralw 266 (266)
T TIGR03464 239 ERAGYDVLRERPKLGKFDWAGLLLRALW 266 (266)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9769987888997489999999999709
No 3
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS), head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes the condensation reaction of two molecules of geranylgeranyl diphosp
Probab=100.00 E-value=0 Score=424.79 Aligned_cols=263 Identities=16% Similarity=0.246 Sum_probs=248.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 9999999852813879988599888068999999999997760367882-589999999999999774017898689899
Q gi|254780161|r 22 LFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNP-ITRDMRLQWWKDIFESSTKGLIAESISPFS 100 (299)
Q Consensus 22 ~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~-~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~ 100 (299)
.||.+++|++|+|||++++|||+++|++++++|||||++|||+|+...+ ..+..+|+||++.++..+.+. .+.|||.
T Consensus 1 ~yc~~i~~~~s~sF~~a~~~Lp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~~--~~~~pv~ 78 (265)
T cd00683 1 AYCRAILRKGSRSFYLASRLLPPELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWGG--APTHPVL 78 (265)
T ss_pred CHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCHHH
T ss_conf 94879978209639999987899999999999999999999877678888999999999999999886689--9998999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998618998999999999985305888899899999864433799999998403430345576688999999899
Q gi|254780161|r 101 VELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIG 180 (299)
Q Consensus 101 ~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~ 180 (299)
.+|.+++++++++..++.+||+||++|++..+|+|++||+.||++|||+||+|++.|+|....+...+.|.++|+|+|+|
T Consensus 79 ~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~eL~~Yc~~vAg~VG~l~~~i~g~~~~~~~~~~A~~lG~AlQlt 158 (265)
T cd00683 79 RALADLARRYGIPREPFRDLLAGMAMDLDKRRYETLDELDEYCYYVAGVVGLMLLRVFGASSDEAALERARALGLALQLT 158 (265)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998809998999999999998756789999999999999711799999999958788188999999988999999
Q ss_pred HHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHH
Q ss_conf 88722478763488734678999639997785246899879999999999999999999964452899999999-99999
Q gi|254780161|r 181 QLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAF-IPVSI 259 (299)
Q Consensus 181 niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~-l~~~~ 259 (299)
|||||+++|+++||+|||.++|.+||++++++.++..+++++.++++++++|+.||.+|.+++..+|+..++++ .++.+
T Consensus 159 NilRDi~eD~~~gRiYlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~~~~~~~~~ 238 (265)
T cd00683 159 NILRDVGEDARRGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSRFCVRAAAML 238 (265)
T ss_pred HHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 89987999995891578899998849999998476688999999999999999999999998986999888999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 999999999688872458986896679
Q gi|254780161|r 260 TESVLKHAQNHGFKIVSHSHTPNQLVR 286 (299)
Q Consensus 260 ~~~~L~~l~~~~~~v~~~~~~~~~~~~ 286 (299)
|..+|.+|++++|++|++|+.+++++|
T Consensus 239 y~~il~~i~~~~~~v~~~R~~l~~~~K 265 (265)
T cd00683 239 YRTILDEIEARGYDVLSVRVRVPKARK 265 (265)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 999999999679976899996898889
No 4
>pfam00494 SQS_PSY Squalene/phytoene synthase.
Probab=100.00 E-value=0 Score=405.14 Aligned_cols=258 Identities=24% Similarity=0.409 Sum_probs=240.3
Q ss_pred HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHH
Q ss_conf 98528138799885998880689999999999977603678825899999999999997740-17898689899999999
Q gi|254780161|r 28 LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTK-GLIAESISPFSVELLSI 106 (299)
Q Consensus 28 lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~-~~~~~~~~Pv~~aL~~~ 106 (299)
+|++|+|||+|++|+|+++|++++++|||||++|||+|+++++..++++++||++..+.... .....+.|||+.+|..+
T Consensus 1 lr~~s~sf~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pv~~al~~~ 80 (262)
T pfam00494 1 LRKHSRSFYLASLLLPPELRRAVAALYAFCREADDIVDEVSDPLIGRARLDWWRDALDAAFAGRRLGPSTHPVLRALADT 80 (262)
T ss_pred CCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 98766306999987899999999999999999988745589876999999999999878888871799988999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9861899899999999998530588889989999986443379999999840343034-557668899999989988722
Q gi|254780161|r 107 VRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYS-ASLRVIKYAGIAQFIGQLICQ 185 (299)
Q Consensus 107 ~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~-~~~~~a~~lG~A~ql~niLRd 185 (299)
++++++++.+|.+||+||++|++.++|+|++||+.||++|||+||+|++.++|.++.. ...+.|.++|+|+|+||||||
T Consensus 81 ~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~Vg~l~~~i~g~~~~~~~~~~~A~~lG~AlQltNilRD 160 (262)
T pfam00494 81 VRRYDLPREPFLELIDGMEMDLEKDRYETLAELEEYCYRVAGVVGLLLLRLLGVRDDAEAADEAARHLGLALQLTNILRD 160 (262)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98839988999999999998736799999999999998816899999999957789458899999999999999999974
Q ss_pred CHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHH-HHHHHHHHHHH
Q ss_conf 4787634887346789996399977852468998799999999999999999999644528-999999-99999999999
Q gi|254780161|r 186 LPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYI-LPDVFP-AFIPVSITESV 263 (299)
Q Consensus 186 i~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l-p~~~r~-~~l~~~~~~~~ 263 (299)
+++|+++||+|||.++|.+||++++++.++..++++++++.+++++|+.||.+|.++++.+ |+++++ +++++.+|..+
T Consensus 161 i~eD~~~gR~YLP~~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~l~p~~~r~~~~~~~~~y~~i 240 (262)
T pfam00494 161 VGEDARRGRVYLPADWLARFGVSPEDLLRGRASPELRALIAELAARARAHLAEARALLALLPPRRARLAVLLAAALYRAI 240 (262)
T ss_pred HHHHHCCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 69998399277888999885999999736679999999999999999999999999885389876789999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 9999968887245898689667
Q gi|254780161|r 264 LKHAQNHGFKIVSHSHTPNQLV 285 (299)
Q Consensus 264 L~~l~~~~~~v~~~~~~~~~~~ 285 (299)
|++|+++||++|+.++.+++++
T Consensus 241 l~~i~~~~~~~~~~R~~l~~~r 262 (262)
T pfam00494 241 LDRLEAAGYDVLRRRVKLSRLR 262 (262)
T ss_pred HHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999867998788998789999
No 5
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=100.00 E-value=0 Score=387.95 Aligned_cols=281 Identities=21% Similarity=0.339 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999852813879988599888068999999999997760367882-5899999999999997740178986
Q gi|254780161|r 17 FSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNP-ITRDMRLQWWKDIFESSTKGLIAES 95 (299)
Q Consensus 17 ~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~-~~~~~rL~~w~~~l~~~~~~~~~~~ 95 (299)
..++.++|.++++++|++||++++|+|+++|++++++|||||++|+|+|++++| ..++++++||++.+.. +.+.+ ..
T Consensus 6 ~~~~~~~c~~i~~~~srtf~la~~~lp~~~R~av~alYa~~R~~Ddv~D~~~~~~~~~e~~~~~~~~~~~~-~~~~~-~~ 83 (288)
T COG1562 6 IMEALDYCLDILRETSRTFYLAILLLPPEKREAVWALYAFCREADDVVDGVSDPDLPAEILLAWRRELDGD-FSGQP-AS 83 (288)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCC-CC
T ss_conf 15889999999997586257999857998999999999999999898304666444899999999987413-46787-66
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 89899999999986189989999999999853058888998999998644337999999984034303455766889999
Q gi|254780161|r 96 ISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGI 175 (299)
Q Consensus 96 ~~Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~a~~lG~ 175 (299)
.|||..+|..++.+++++.++|.+|++||.+|+...+|.+++||+.||++|||+||+|++.|++........+.+..+|.
T Consensus 84 ~~pv~~al~~~~~~~~~~~~~~~~~~da~~~Dl~~~~y~~~~eL~~Yc~~vAg~vG~l~~~Il~~~~~~~~~~~a~~lG~ 163 (288)
T COG1562 84 DHPVLAALVEVARRFGLPREAFPALIDAMRMDLDRTRYLDFEELEEYCYGVAGAVGLLLARILGPDKDAATRAYARGLGL 163 (288)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 68799988999987089778999999999977653414698999999988699999999998584620013899999889
Q ss_pred HHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99899887224787634887346789996399977852468998799999999999999999999644528999999999
Q gi|254780161|r 176 AQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAFI 255 (299)
Q Consensus 176 A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~l 255 (299)
|+|++|||||+++|..+||+|||.|+|.+||++.+++..+..+++++.++..++.+|+.|+..|+.++..+|.+.++.++
T Consensus 164 A~QlvNilRdv~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~~~~~~~~ 243 (288)
T COG1562 164 ALQLVNILRDVGEDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGRAQLAVL 243 (288)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999972889967904287799988099988987123216899999999999999999999866517831120056
Q ss_pred HHH-HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999-99999999996888724589868966799999999862779
Q gi|254780161|r 256 PVS-ITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIKKRF 299 (299)
Q Consensus 256 ~~~-~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~~~~~~f 299 (299)
++. ++..++.+++++++++|+.+..++..++.|+++++.+++.+
T Consensus 244 ~~~~~~~~~~~~i~a~~~~vl~~~~~l~~~~~~~~~~~~~~~~~~ 288 (288)
T COG1562 244 AAALLYAYLLDAIEADPADVLSQRAVLPKLRKLWLLLKAWLRGFV 288 (288)
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 899999999999874623553257635741378999999874169
No 6
>KOG4411 consensus
Probab=100.00 E-value=5.6e-44 Score=317.09 Aligned_cols=280 Identities=23% Similarity=0.285 Sum_probs=256.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 999999999985281387998859988806899999999999776-036788258999999999999977401789-868
Q gi|254780161|r 19 RDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRV-RDTARNPITRDMRLQWWKDIFESSTKGLIA-ESI 96 (299)
Q Consensus 19 ~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i-~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~-~~~ 96 (299)
.....|..++|++|+..|+|.+.+|.+.|.++++|.|||.|+++| .|.-++|.++.||||||+|+|+.+|.-.+. .++
T Consensus 9 ~~A~sc~~~vr~ydy~~ylc~l~lp~e~r~aafaLrAfNVE~ar~~~d~~~~p~ia~mRL~fW~daIdk~y~~~p~~v~~ 88 (292)
T KOG4411 9 RSALSCVQQVRNYDYHHYLCLLELPTEMRKAAFALRAFNVELARIKVDTRKGPAIAMMRLQFWKDAIDKIYGISPLPVPR 88 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 42889999998652898999972838899899999874588888751344573999999999999999873889877787
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 98999999999861899899999999998530588889989999986443379999999840343034557668899999
Q gi|254780161|r 97 SPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIA 176 (299)
Q Consensus 97 ~Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~a~~lG~A 176 (299)
|||+++|..++..+++.+.++.+++++|+.+...+.|++..+|++|.+.|-|++.++.++..|... ....++|+|+|.|
T Consensus 89 qPva~aL~~~~~~~~~nk~~L~rlV~aR~r~~~d~~fesI~eLeeY~e~TissLL~l~l~agg~~~-~~AdhaAshlGkA 167 (292)
T KOG4411 89 QPVAIALCSFAAGHNANKDMLLRLVEARQRTIGDRQFESINELEEYGESTISSLLCLQLDAGGKVL-PMADHAASHLGKA 167 (292)
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHH
T ss_conf 579999999872054477999999887615776520677999999988679999999997247125-6357789887688
Q ss_pred HHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 989988722478763488734678999639997785-2468998799999999999999999999644528999999999
Q gi|254780161|r 177 QFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESF-LSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAFI 255 (299)
Q Consensus 177 ~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l-~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~l 255 (299)
+|++|+||.+|...++|..|||.|.|..||++++++ ......+++..++++++..|+.||..|++..+.+|+..||+++
T Consensus 168 ~gia~llrs~p~~~~r~~~~iPadv~~lhGvtq~~il~~k~~~~g~~~~~fd~as~an~hL~~AR~l~~kVP~~vrp~ll 247 (292)
T KOG4411 168 YGIANLLRSTPPLLARGIVLIPADVMSLHGVTQLDILYKKKKLDGMVGMTFDLASEANRHLIDARSLIEKVPKAVRPALL 247 (292)
T ss_pred HHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89999997456877278862448999873997888886033213255579999999999999877476537787878999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999688872458-9868966799999999862779
Q gi|254780161|r 256 PVSITESVLKHAQNHGFKIVSH-SHTPNQLVRPWYMLSSSIKKRF 299 (299)
Q Consensus 256 ~~~~~~~~L~~l~~~~~~v~~~-~~~~~~~~~~~~l~r~~~~~~f 299 (299)
..+.+..||+.|+|++|+++++ ..+..++-.+-+++|..++.+|
T Consensus 248 ~tv~td~~l~~l~k~nfdi~~p~~~~R~~L~lp~lLfw~sl~~~f 292 (292)
T KOG4411 248 ATVTTDYILKTLEKNNFDIYSPHLQRRNPLLLPSLLFWRSLCSKF 292 (292)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 861099999999871543358766047864563899999998519
No 7
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase; InterPro: IPR006449 This family of sequences describe farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs lack the C-terminal predicted transmembrane region universally conserved among members of this family and therefore are not included in this group. These enzymes catalyse the formation of squalene by the reductive dimerisation of two farnesyl diphosphate molecules in a two-step reaction. This reaction occurs at the final branch point of the isoprenoid biosynthesis pathway, and is the first committed step in cholesterol biosynthesis. 2 farnesyl diphosphate ---> presqualene diphosphate ---> squalene The human enzyme (P37268 from SWISSPROT) is a membrane-bound monomer which folds as a single domain . A large channel surrounded by five alpha helices runs through the centre of the protein. One end of this channel is exposed to solvent, while the other is completely enclosed and surrounded by hydrophobic residues. The two half reactions occur at different active sites in this channel. The first half reaction occurs at one end of the channel, then the intermediate is thought to move into the enclosed pocket where the second half reaction occurs. ; GO: 0004310 farnesyl-diphosphate farnesyltransferase activity, 0008610 lipid biosynthetic process, 0016021 integral to membrane.
Probab=99.87 E-value=9.3e-23 Score=173.28 Aligned_cols=263 Identities=10% Similarity=0.055 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHH----CCCCC
Q ss_conf 99999999985281387998859988806899999999999776036788258999-99999999997740----17898
Q gi|254780161|r 20 DSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDM-RLQWWKDIFESSTK----GLIAE 94 (299)
Q Consensus 20 d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~-rL~~w~~~l~~~~~----~~~~~ 94 (299)
+..+|-++|-..||||.+.+.-||++.|++++..|..=|.+|+|.|+++-+...++ -|.-+.+.|..-.. +.|..
T Consensus 2 ~~~~CY~lLn~~SRSFA~VI~~L~~elRnaV~iFYLvLRALDTvEDDM~i~~d~KiPlLr~F~~~i~~~~W~f~~s~P~~ 81 (350)
T TIGR01559 2 ELRRCYELLNLTSRSFAAVIQELPPELRNAVCIFYLVLRALDTVEDDMTISVDKKIPLLRDFHKKIYDTDWRFTESDPNE 81 (350)
T ss_pred CCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCH
T ss_conf 74216777164105689998745776762588898887432663257765611366115888997568984015883866
Q ss_pred CCCHHHHHHHHHHHHCC-CCH------H-HHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 68989999999998618-998------9-9999999998530588-----8899899999864433799999998403--
Q gi|254780161|r 95 SISPFSVELLSIVRQYD-LPN------Q-YFLDMIEAHFFDSYND-----SIFDCKQFEHYAFRISSRLIHLATMILD-- 159 (299)
Q Consensus 95 ~~~Pv~~aL~~~~~~~~-l~~------~-~l~~lid~~~~Dl~~~-----~~~t~~~L~~Y~~~~ag~vg~l~~~i~~-- 159 (299)
...-|+..+-.+..+|. |.+ + --.+|=+||..-+... +.+|.+|++.||++|||.||.-+.+++.
T Consensus 82 ~dr~lL~~F~~v~~eF~~L~~~YQevI~dIT~rMG~GMA~f~~~~~~n~ngv~Tv~dyD~YCHYVAGlVG~GLsrLf~~s 161 (350)
T TIGR01559 82 KDRQLLDDFPVVSLEFLKLKPKYQEVIADITKRMGNGMADFVLKEVTNENGVDTVEDYDKYCHYVAGLVGLGLSRLFVAS 161 (350)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf 67777542027999873278543268999877611247888630466765200187626767266424003389999987
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC---CCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---430345576688999999899887224787634---88734678999639997785246899879999999999999
Q gi|254780161|r 160 ---SERYSASLRVIKYAGIAQFIGQLICQLPIHYHR---GQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGL 233 (299)
Q Consensus 160 ---~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~---gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~ 233 (299)
.+.-......+.++|.-+|.|||+||--||... ||-++|+|++.||--.-+|+...+++..--.++-+++.=|-
T Consensus 162 ~~~~~~l~~~~~l~nSMGLFLQKtNIIRDY~ED~~~~P~~R~FWPrEIWskYa~~L~Df~~P~N~~~al~Clnelv~NAL 241 (350)
T TIGR01559 162 GFEDPSLAESEALSNSMGLFLQKTNIIRDYLEDIDELPKGRMFWPREIWSKYAKKLGDFKKPENSEKALQCLNELVTNAL 241 (350)
T ss_pred HCCCCCCCCCHHHHHHHCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 31677755456778640115432432430033053078438879843166656667751283678888643689998784
Q ss_pred HHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCH
Q ss_conf 99999996445289999--999999999999999999688872458---986896
Q gi|254780161|r 234 KYLFKAREEMRYILPDV--FPAFIPVSITESVLKHAQNHGFKIVSH---SHTPNQ 283 (299)
Q Consensus 234 ~~l~~a~~~~~~lp~~~--r~~~l~~~~~~~~L~~l~~~~~~v~~~---~~~~~~ 283 (299)
.|...+..++..+.-+. ..+-+|.+.+-+.|. +--+|.+||++ .+.+.+
T Consensus 242 ~H~~D~L~YL~~l~dqsiF~FCAIPQvMAIaTLa-lvYnN~~VF~gPka~VKlRk 295 (350)
T TIGR01559 242 SHATDCLTYLSSLRDQSIFNFCAIPQVMAIATLA-LVYNNPDVFQGPKANVKLRK 295 (350)
T ss_pred HCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHH-HHHCCHHHHCCCCCCEEECC
T ss_conf 0489999985047799702344742567999999-86238568238865143046
No 8
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. The head-to-head (HH) IPPS catalyze t
Probab=99.72 E-value=1e-15 Score=125.54 Aligned_cols=192 Identities=10% Similarity=-0.014 Sum_probs=147.2
Q ss_pred CHHHHHHHCCH----------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 38799885998----------88068999999999997760367882589999999-99999977401789868989999
Q gi|254780161|r 34 DRYLACLLSPP----------LYRISLSFLYYFHTELMRVRDTARNPITRDMRLQW-WKDIFESSTKGLIAESISPFSVE 102 (299)
Q Consensus 34 ~~y~a~~~lP~----------~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~-w~~~l~~~~~~~~~~~~~Pv~~a 102 (299)
+|++.++++++ ..+.++..+|+|++..|||.|+............+ |.....-. . ...++..+
T Consensus 1 ~Rp~l~~~~~~~~g~~~~~~~~~a~avElih~~slihDDi~D~~~~RRg~~t~~~~~~g~~~ail-~-----gd~l~~~a 74 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALAIL-A-----GDYLLARA 74 (236)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHH-H-----HHHHHHHH
T ss_conf 96599999999839888899999999999999999977533699777898656888605578999-7-----20999999
Q ss_pred HHHHHH-----HCCCCHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHH-HHHHHHHHHHHHCCCCC-----HHHHHHH
Q ss_conf 999998-----618998999999999985305888--8998999998644-33799999998403430-----3455766
Q gi|254780161|r 103 LLSIVR-----QYDLPNQYFLDMIEAHFFDSYNDS--IFDCKQFEHYAFR-ISSRLIHLATMILDSER-----YSASLRV 169 (299)
Q Consensus 103 L~~~~~-----~~~l~~~~l~~lid~~~~Dl~~~~--~~t~~~L~~Y~~~-~ag~vg~l~~~i~~~~~-----~~~~~~~ 169 (299)
+....+ .+.+..+.+..+++|+..|+.... ..|++++..||+. |++.++.++........ .+.....
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~Dl~~~~~~~~t~~~~~~~~~~KTa~l~~~~~~~~a~~~~~~~~~~~~l~~~ 154 (236)
T cd00867 75 FQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDY 154 (236)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99986238789999999999999998899976047888999999999998869999999999999819899999999999
Q ss_pred HHHHHHHHHHHHHHHCCHHHH----------HCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999998998872247876----------3488734678999639997785246899879999999999999999999
Q gi|254780161|r 170 IKYAGIAQFIGQLICQLPIHY----------HRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKA 239 (299)
Q Consensus 170 a~~lG~A~ql~niLRdi~~d~----------~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a 239 (299)
+.++|.|+|++|.++|+..|. ..||+|+|...+ ++...++++.++..+
T Consensus 155 g~~lG~AfQi~DDllD~~~d~~~~gk~~~D~~~gk~tlp~~~~----------------------~~~~~~~a~~~~~~~ 212 (236)
T cd00867 155 GRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA----------------------RERAAEYAEEAYAAL 212 (236)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCHHHHHHH----------------------HHHHHHHHHHHHHHH
T ss_conf 9999999999999988408967769562568769720999999----------------------999999999999999
Q ss_pred HHHHHHCCHHHHHH
Q ss_conf 96445289999999
Q gi|254780161|r 240 REEMRYILPDVFPA 253 (299)
Q Consensus 240 ~~~~~~lp~~~r~~ 253 (299)
.......|+.....
T Consensus 213 ~~~~~~~~~~~~~l 226 (236)
T cd00867 213 EALPPSLPRARRAL 226 (236)
T ss_pred HHHHHHCCHHHHHH
T ss_conf 98666267868999
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.63 E-value=1.7e-14 Score=117.36 Aligned_cols=207 Identities=15% Similarity=0.072 Sum_probs=161.3
Q ss_pred HHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8799885998--880689999999999977603678825899999999---99999774017898689899999999986
Q gi|254780161|r 35 RYLACLLSPP--LYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWW---KDIFESSTKGLIAESISPFSVELLSIVRQ 109 (299)
Q Consensus 35 ~y~a~~~lP~--~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w---~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~ 109 (299)
+++++.+.|. +.|.++..+|+|++..|||.|+............+| ..... +. . ...++..++..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~DDi~D~~~~~r~~~~~~~~~~~~~~~~~-~~---~--~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEA-IL---A--GDLLLADAFEELARE 75 (243)
T ss_pred CCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHH-HH---H--HHHHHHHHHHHHHHC
T ss_conf 67510358679999999999999999997156699998863859999870483999-99---9--999999999999864
Q ss_pred -----CCCCHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHH-HHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHH
Q ss_conf -----18998999999999985305888--89989999986443-379999999840343-----034557668899999
Q gi|254780161|r 110 -----YDLPNQYFLDMIEAHFFDSYNDS--IFDCKQFEHYAFRI-SSRLIHLATMILDSE-----RYSASLRVIKYAGIA 176 (299)
Q Consensus 110 -----~~l~~~~l~~lid~~~~Dl~~~~--~~t~~~L~~Y~~~~-ag~vg~l~~~i~~~~-----~~~~~~~~a~~lG~A 176 (299)
.......+.+++.|+..|+.... ..|++++..|++.+ ++.++.++....+.. ........+.++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~s~~~y~~~~~~kta~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a 155 (243)
T cd00385 76 GSPEALEILAEALLDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLA 155 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999999999986579999999999974228999999999999998099999999999999999999
Q ss_pred HHHHHHHHCCHHHHHC--CCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9899887224787634--8873467899963999778524689987999999999999999999996445289
Q gi|254780161|r 177 QFIGQLICQLPIHYHR--GQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYIL 247 (299)
Q Consensus 177 ~ql~niLRdi~~d~~~--gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp 247 (299)
+|++|.++|+..|.+. |++|+|...+.+++.+.++......++....+...+...++..+..........|
T Consensus 156 ~ql~nDl~d~~~d~~~~~g~~t~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~ 228 (243)
T cd00385 156 FQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSLP 228 (243)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999956246848024899866999999884883766554013586999999999999999999999977888
No 10
>KOG1459 consensus
Probab=99.61 E-value=9.6e-14 Score=112.18 Aligned_cols=271 Identities=10% Similarity=0.019 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHH---HCCC--
Q ss_conf 9999999999852813879988599888068999999999997760367882589999-999999999774---0178--
Q gi|254780161|r 19 RDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMR-LQWWKDIFESST---KGLI-- 92 (299)
Q Consensus 19 ~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~r-L~~w~~~l~~~~---~~~~-- 92 (299)
..+..|.+++-..+++|-....-++.+.|.++..+|..-|.+|.++|+.+-|...+.. |.-+...+.... .+..
T Consensus 31 ~~~~~Cy~~l~~tsrsfa~Vi~~l~~elRNav~ifylVlraLdtvedd~sI~~d~kvpil~~fhk~i~~~~w~f~~s~~k 110 (413)
T KOG1459 31 PLLSPCYNLLNLTSRSFAAVIQELSSELRNAVCIFYLVLRALDTVEDDMSIPLDKKVPILRVFHKQIYLVDWQFRESSPK 110 (413)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHEEEEEHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCHH
T ss_conf 67799999998601238898886078875110035542113304788881532123619999999984057610479855
Q ss_pred ----CCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH----
Q ss_conf ----986898999999999861899-89999999999853058888998999998644337999999984034303----
Q gi|254780161|r 93 ----AESISPFSVELLSIVRQYDLP-NQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERY---- 163 (299)
Q Consensus 93 ----~~~~~Pv~~aL~~~~~~~~l~-~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~---- 163 (299)
.+.-|-|..++...-..|+=- .+.-.+|=.||..-+. ...+|..|+..||++|||-||.-...++....-
T Consensus 111 ~r~~l~qf~~v~~ef~~L~e~Yqeviaeitk~mg~Gma~~~~-~~v~ti~d~d~yChyvagLVg~glsrlf~~s~le~~~ 189 (413)
T KOG1459 111 DRQLLPQFVVVSGEFLNLGEGYQEVIAEITKRMGLGMALFIP-EEVETIWDYDVYCHYVAGLVGIGLSRLFTASKLEDLL 189 (413)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 543063335202999975588999999999997030887668-8774799999999998776077467664388776542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45576688999999899887224787634887346789996399977852468998799999999999999999999644
Q gi|254780161|r 164 SASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEM 243 (299)
Q Consensus 164 ~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~ 243 (299)
....+..+.+|.-+|-|||+||..||.--||-+.|+++..++--.-+|+.-.++++.--.++.++..-|-.|....-..+
T Consensus 190 ~~~e~l~ns~glfLqktnIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~~~~en~dl~l~Cln~m~tnaL~hv~d~l~yl 269 (413)
T KOG1459 190 ARLEQLSNSMGLFLQKTNIIRDYLEDPVDGRPFWPREIWGKYMDKLKDFRYPENDDLALQCLNEMVTNALMHVPDVLTYL 269 (413)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 55899860666187776789998844345774676888998878877632765216899999999887763148998788
Q ss_pred HHCCHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 5289999--99999999999999999968887245898689667999999
Q gi|254780161|r 244 RYILPDV--FPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYML 291 (299)
Q Consensus 244 ~~lp~~~--r~~~l~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~ 291 (299)
..+.-.. ..+.+|.+.+...|. +.-+|-++|++++.+.+..---.+.
T Consensus 270 s~l~~qsvfnfcaipqimai~Tla-l~~nn~dvfrG~VklrkGl~~~~I~ 318 (413)
T KOG1459 270 SKLRTQSVFNFCAIPQIMAIATLA-LCYNNEDVFRGNVKLRKGLAVELIL 318 (413)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHH-HHHCCHHHHCCCEEECCCCHHHHHH
T ss_conf 613668999998888999999999-9955776720114533775278887
No 11
>KOG1459 consensus
Probab=99.58 E-value=4.7e-14 Score=114.28 Aligned_cols=261 Identities=7% Similarity=-0.045 Sum_probs=209.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999998528138799885998880689999999999977603678825899999999999997740178986898999
Q gi|254780161|r 22 LFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSV 101 (299)
Q Consensus 22 ~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~ 101 (299)
+-|.++. +.++..+...-.+.++.++.+|-+|+.++.+++..-......+.|.-|.-.+++++++.+..-. -.
T Consensus 134 eviaeit----k~mg~Gma~~~~~~v~ti~d~d~yChyvagLVg~glsrlf~~s~le~~~~~~e~l~ns~glfLq---kt 206 (413)
T KOG1459 134 EVIAEIT----KRMGLGMALFIPEEVETIWDYDVYCHYVAGLVGIGLSRLFTASKLEDLLARLEQLSNSMGLFLQ---KT 206 (413)
T ss_pred HHHHHHH----HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH---HH
T ss_conf 9999999----9970308876688774799999999998776077467664388776542558998606661877---76
Q ss_pred HHHHHHHHCCCCHHHHH-HHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHH
Q ss_conf 99999986189989999-999999853-0588889989999986443379999999840----34303455766889999
Q gi|254780161|r 102 ELLSIVRQYDLPNQYFL-DMIEAHFFD-SYNDSIFDCKQFEHYAFRISSRLIHLATMIL----DSERYSASLRVIKYAGI 175 (299)
Q Consensus 102 aL~~~~~~~~l~~~~l~-~lid~~~~D-l~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~----~~~~~~~~~~~a~~lG~ 175 (299)
.+.+...+...+.++|- +.|.|+.+| +..-.+++.+++-.||.+.+++.++|-.+.+ ..-..+...+.+.-.|+
T Consensus 207 nIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~~~~en~dl~l~Cln~m~tnaL~hv~d~l~yls~l~~qsvfnfcaipqi 286 (413)
T KOG1459 207 NIIRDYLEDPVDGRPFWPREIWGKYMDKLKDFRYPENDDLALQCLNEMVTNALMHVPDVLTYLSKLRTQSVFNFCAIPQI 286 (413)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 78999884434577467688899887887763276521689999999988776314899878861366899999888899
Q ss_pred HHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99899887224787634887346789996399977852468998799999999999999999999644528999999999
Q gi|254780161|r 176 AQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAFI 255 (299)
Q Consensus 176 A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~l 255 (299)
+-+.|++|++..+|..+|+++||+ |.+.+.+.++...+++++++..+..+++..++.+.+..-.+....+..+.
T Consensus 287 mai~Tlal~~nn~dvfrG~Vklrk------Gl~~~~I~~~k~~~~v~~~f~~y~~~i~~k~d~~dpnflklsask~~qv~ 360 (413)
T KOG1459 287 MAIATLALCYNNEDVFRGNVKLRK------GLAVELILASKTMDKVRNIFYMYLRDIRMKFDEADPNFLKLSASKTEQVW 360 (413)
T ss_pred HHHHHHHHHHCCHHHHCCCEEECC------CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999999557767201145337------75278887145378899999999999985378568971221045389999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999688872458986896679999999986
Q gi|254780161|r 256 PVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSI 295 (299)
Q Consensus 256 ~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~~~ 295 (299)
....-....+.+..++++.|.+++......+...+-++..
T Consensus 361 esl~~~~~~~~il~n~~~~f~k~~~v~~V~~i~al~~ay~ 400 (413)
T KOG1459 361 ESLLLYRRPDEILANRYNNFTKRIYVGFVKKIAALPLAYA 400 (413)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999862642001353300022047899999999999999
No 12
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS), head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesis various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX)D) located on opposite walls. These residues mediate binding of pre
Probab=95.53 E-value=0.2 Score=28.69 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHH---CCCC---CHHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 99999999985305888--8998999998644337999999984---0343---0345576688999999899887224-
Q gi|254780161|r 116 YFLDMIEAHFFDSYNDS--IFDCKQFEHYAFRISSRLIHLATMI---LDSE---RYSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~~--~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~---~~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
....+..|...|+.... -.|++++..-+..-.|.+...++.+ ++.. ..........++|.|+|+.+=+.|+
T Consensus 116 ~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 195 (298)
T cd00685 116 AILELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLF 195 (298)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999888899986378999999999999999999999999999999839999999999999887689999999987422
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHH-HHH---CCCCC-HHH---HHH------HHHHHHHHHHHHHHHHHH
Q ss_conf ----------787634887346789996399977-852---46899-879---999------999999999999999964
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRE-SFL---SGQNS-DRI---SLA------IKIFAELGLKYLFKAREE 242 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e-~l~---~~~~~-~~~---~~~------~~~~~~~A~~~l~~a~~~ 242 (299)
+.|+..|+.-+|.=..-+..-..+ ... .+..+ +.+ ..+ ++.....++.|.++|...
T Consensus 196 g~~~~~GK~~g~Dl~eGk~Tlp~i~al~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~ 275 (298)
T cd00685 196 GDPETLGKPVGSDLREGKCTLPVLLALERAPPEQRLLLELLLGKGDEEDVEEARALVKKSGGIEYARELAREYEEKALEA 275 (298)
T ss_pred CCHHHHCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89788599843166569840999999987998779999986168999999999999998696999999999999999999
Q ss_pred HHHCCHHH
Q ss_conf 45289999
Q gi|254780161|r 243 MRYILPDV 250 (299)
Q Consensus 243 ~~~lp~~~ 250 (299)
+..+|...
T Consensus 276 L~~l~~~~ 283 (298)
T cd00685 276 LKALPESP 283 (298)
T ss_pred HHCCCCCH
T ss_conf 87399978
No 13
>PRK10581 geranyltranstransferase; Provisional
Probab=95.35 E-value=0.23 Score=28.31 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHH---HCCCCC-H---HHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 9999999985305888-899899999864433799999998---403430-3---4557668899999989988722478
Q gi|254780161|r 117 FLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATM---ILDSER-Y---SASLRVIKYAGIAQFIGQLICQLPI 188 (299)
Q Consensus 117 l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~-~---~~~~~~a~~lG~A~ql~niLRdi~~ 188 (299)
+..++.|...|+.... ..+.++++.-...-.|++...++. +..+.. . .....+..++|+|||+.+=+-|+-.
T Consensus 151 ~~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTa~Lf~~a~~~gai~ag~~~~~~~~~l~~~g~~lGiAFQI~DDlLD~~g 230 (299)
T PRK10581 151 IAGMCGGQALDLEAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVG 230 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98862018999985237999999999999999999999999999984999899999999999998899998645777038
Q ss_pred HHH-CCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 763-48873467899963999778524689987999999999999999999996445289999
Q gi|254780161|r 189 HYH-RGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDV 250 (299)
Q Consensus 189 d~~-~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~ 250 (299)
|.. .|+- .-.|+..|..|=-.--.+++-..+++.++++|.+.+..+++..
T Consensus 231 d~~~~GK~------------~g~Dl~eGK~Tlp~i~gle~A~~~a~~l~~~a~~~L~~l~~~~ 281 (299)
T PRK10581 231 DTATLGKR------------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAAQS 281 (299)
T ss_pred CHHHHCCC------------CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98997999------------2614663965399999999999999999999999998746266
No 14
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=92.41 E-value=0.83 Score=24.51 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 99999999853058--888998999998644337999999984---03430---345576688999999899887224--
Q gi|254780161|r 117 FLDMIEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL-- 186 (299)
Q Consensus 117 l~~lid~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi-- 186 (299)
...+.+|...|+.. .+-.+.+++..-++.-.|.++..++.+ ++..+ ......+..++|.|||+.+=+-|+
T Consensus 139 ~~~~~eGe~~q~~~~~~~~~~~~~yl~~i~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~AFQI~DDlLD~~g 218 (323)
T PRK10888 139 VNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999688999985427899999999999999999999999999987099999999999999999999999997520247
Q ss_pred ---------HHHHHCCCCCCCHHHHHHCCCCHHH-H----HCCCCCH-HHHH---------HHHHHHHHHHHHHHHHHHH
Q ss_conf ---------7876348873467899963999778-5----2468998-7999---------9999999999999999964
Q gi|254780161|r 187 ---------PIHYHRGQLYFPLDILGAVGLDRES-F----LSGQNSD-RISL---------AIKIFAELGLKYLFKAREE 242 (299)
Q Consensus 187 ---------~~d~~~gr~yLP~~~l~~~gv~~e~-l----~~~~~~~-~~~~---------~~~~~~~~A~~~l~~a~~~ 242 (299)
+.|+..|..-+|.=..-+++-+.+. + .....++ .+.. .++.-...|+.|.++|...
T Consensus 219 d~~~~GK~~g~Dl~eGk~TlPvi~Al~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~~~gai~~a~~~a~~~~~~A~~~ 298 (323)
T PRK10888 219 DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAA 298 (323)
T ss_pred CHHHHCCCCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87886899651342586479999999849998999999987478849999999999998695999999999999999999
Q ss_pred HHHCCHHH-HHHH
Q ss_conf 45289999-9999
Q gi|254780161|r 243 MRYILPDV-FPAF 254 (299)
Q Consensus 243 ~~~lp~~~-r~~~ 254 (299)
+..+|... +..+
T Consensus 299 L~~lp~s~~r~~L 311 (323)
T PRK10888 299 LQVLPDTPWREAL 311 (323)
T ss_pred HHHCCCCHHHHHH
T ss_conf 8708997899999
No 15
>KOG0776 consensus
Probab=91.93 E-value=0.95 Score=24.14 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHHHHHHHHH--HHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHCC-----------HHHHHCCCCCCCH----HH
Q ss_conf 8644337999--999984034303---45576688999999899887224-----------7876348873467----89
Q gi|254780161|r 142 YAFRISSRLI--HLATMILDSERY---SASLRVIKYAGIAQFIGQLICQL-----------PIHYHRGQLYFPL----DI 201 (299)
Q Consensus 142 Y~~~~ag~vg--~l~~~i~~~~~~---~~~~~~a~~lG~A~ql~niLRdi-----------~~d~~~gr~yLP~----~~ 201 (299)
..+.||+-+. ..+..|+++... +...++.+++|.++|++.=+-|. +.|...|..--|. +.
T Consensus 237 ~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf~~e~ 316 (384)
T KOG0776 237 TLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLFALEK 316 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHCCCCCCCHHHHHH
T ss_conf 99989989999999999872899999999999988889899986214475433243076233456513344640334342
Q ss_pred HHHC----CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHH
Q ss_conf 9963----99977852468998799999999999999999999644528999-9999999
Q gi|254780161|r 202 LGAV----GLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD-VFPAFIP 256 (299)
Q Consensus 202 l~~~----gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~-~r~~~l~ 256 (299)
-.+. .-...+-..+.........++.-...|+.|-..|.+.+..+|+. +|.++.-
T Consensus 317 ~pe~~e~l~~~~~e~~~~~~~~k~v~~v~~a~~la~~~~~~Al~~l~~~p~s~ar~aL~~ 376 (384)
T KOG0776 317 SPELREKLEREFSEPLDGFDADKAVPGVALAKYLARRHNNKALEALQSLPRSEARSALEN 376 (384)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 758999998741252004678999899999999999988999999847999568999999
No 16
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=86.91 E-value=2.2 Score=21.61 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH---CCCC---CHHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 999999999985305888-8998999998644337999999984---0343---0345576688999999899887224-
Q gi|254780161|r 115 QYFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATMI---LDSE---RYSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 115 ~~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~---~~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
.....+..|...|+.... ..|.+++..-.+.-.|.+...++.+ +... .......+..++|.|||+.+=+-|+
T Consensus 141 ~~~~~~~~GQ~lDl~~~~~~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~ 220 (322)
T COG0142 141 EAINGLCGGQALDLAFENKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDIT 220 (322)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999977289998667889999999999999899999999999999819989999999999998778888677477505
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHHHH-HCCC-CCHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q ss_conf ----------78763488734678999639997785-2468-9987999999---------9999999999999964452
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRESF-LSGQ-NSDRISLAIK---------IFAELGLKYLFKAREEMRY 245 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e~l-~~~~-~~~~~~~~~~---------~~~~~A~~~l~~a~~~~~~ 245 (299)
+.|+..|..-+|.-.--+.+-..+.. .... ....+..+.+ .-...+..+.++|.+.+..
T Consensus 221 ~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~ 300 (322)
T COG0142 221 GDEEELGKPVGSDLKEGKPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEK 300 (322)
T ss_pred CCHHHHCCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87276289743568818852999999984756567898875101469999999997053899999999999999999884
Q ss_pred CC
Q ss_conf 89
Q gi|254780161|r 246 IL 247 (299)
Q Consensus 246 lp 247 (299)
+|
T Consensus 301 l~ 302 (322)
T COG0142 301 LP 302 (322)
T ss_pred CC
T ss_conf 79
No 17
>pfam00348 polyprenyl_synt Polyprenyl synthetase.
Probab=81.07 E-value=3.9 Score=19.97 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=48.6
Q ss_pred HHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCCH-------
Q ss_conf 9998530588-88998999998644337999999984---03430---3455766889999998998872247-------
Q gi|254780161|r 122 EAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQLP------- 187 (299)
Q Consensus 122 d~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi~------- 187 (299)
.+...|+... .-.|++++..-++.-.|++..+++.+ +++.+ .........++|.|+|+.+=+-|+-
T Consensus 120 ~gQ~~d~~~~~~~~s~~~y~~~~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~g~~lGiaFQi~DDiLD~~gd~~~~G 199 (260)
T pfam00348 120 VGQLMDLETEGKDITLEEYLRIVSYKTAALFYASVQLGAIVAGADEEDEKDLYDFGRDLGLAFQIQDDILDLTGDTEELG 199 (260)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 99999875678899999999999997599999999999998199999999999999873689998997641448987709
Q ss_pred ----HHHHCCCCCCCH
Q ss_conf ----876348873467
Q gi|254780161|r 188 ----IHYHRGQLYFPL 199 (299)
Q Consensus 188 ----~d~~~gr~yLP~ 199 (299)
.|+..|+.-+|.
T Consensus 200 K~~g~Dl~egK~T~p~ 215 (260)
T pfam00348 200 KPVGTDLQEGKSTLPV 215 (260)
T ss_pred CCCCCHHHCCCHHHHH
T ss_conf 9955467569036999
No 18
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II; InterPro: IPR014119 The proteins in this entry are component II of the heterodimeric heptaprenyl diphosphate synthase. They are found proximate to the gene for component I (IPR009920 from INTERPRO). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis..
Probab=77.42 E-value=5 Score=19.23 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=76.5
Q ss_pred CCCCCCHHHHHHHHHH----HHHHHH--HHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHC-----------CHHH
Q ss_conf 8888998999998644----337999--99998403430---34557668899999989988722-----------4787
Q gi|254780161|r 130 NDSIFDCKQFEHYAFR----ISSRLI--HLATMILDSER---YSASLRVIKYAGIAQFIGQLICQ-----------LPIH 189 (299)
Q Consensus 130 ~~~~~t~~~L~~Y~~~----~ag~vg--~l~~~i~~~~~---~~~~~~~a~~lG~A~ql~niLRd-----------i~~d 189 (299)
++.|.=...|..|..+ ||--+. +-+..|-++.+ ...+....-.+|.++|||+=.=| .+.|
T Consensus 152 kDkYN~dQ~lR~YLRRIKRKTALLIA~SCqLGAia~Ga~~~~~~~LY~FGYYvGMSyQI~DDiLDFvgTee~LGKPAG~D 231 (325)
T TIGR02748 152 KDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGADEAIVKKLYWFGYYVGMSYQIIDDILDFVGTEEELGKPAGGD 231 (325)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 10137888600366566688999999877652000588987877365533542014544432136646631168875765
Q ss_pred HHCCCCCCCHHHHHHCCC-CH---HHHHCCC---CCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHCCHHH-HH
Q ss_conf 634887346789996399-97---7852468---998799999999---------9999999999996445289999-99
Q gi|254780161|r 190 YHRGQLYFPLDILGAVGL-DR---ESFLSGQ---NSDRISLAIKIF---------AELGLKYLFKAREEMRYILPDV-FP 252 (299)
Q Consensus 190 ~~~gr~yLP~~~l~~~gv-~~---e~l~~~~---~~~~~~~~~~~~---------~~~A~~~l~~a~~~~~~lp~~~-r~ 252 (299)
+.+|.+-||.=-=-++.. -. +.+.... ....+..+++++ .+.++.||.+|.+.++.+|..- +.
T Consensus 232 LlQGNvTLPvLYAl~d~~~~K~~i~~v~~~~g~v~~~em~~~i~~vk~~~aI~~a~a~Sd~YL~KA~~~L~~LP~~~ak~ 311 (325)
T TIGR02748 232 LLQGNVTLPVLYALEDPIGLKKRIEQVLEETGSVTAEEMEELIEEVKKSDAIERAYAVSDRYLKKALELLDGLPDGEAKK 311 (325)
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 35520167888851597888999973034456768889999999985056799999999999999999986278813568
Q ss_pred HH
Q ss_conf 99
Q gi|254780161|r 253 AF 254 (299)
Q Consensus 253 ~~ 254 (299)
.+
T Consensus 312 ~L 313 (325)
T TIGR02748 312 LL 313 (325)
T ss_pred HH
T ss_conf 89
No 19
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active
Probab=77.16 E-value=5.1 Score=19.18 Aligned_cols=202 Identities=12% Similarity=0.081 Sum_probs=106.1
Q ss_pred HHHHHCC--HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9988599--88806899999999999776036788258999999999999977---401789868989999999998618
Q gi|254780161|r 37 LACLLSP--PLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESS---TKGLIAESISPFSVELLSIVRQYD 111 (299)
Q Consensus 37 ~a~~~lP--~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~---~~~~~~~~~~Pv~~aL~~~~~~~~ 111 (299)
.++.+-| .+.|..+.-+.++--.+||+-|....... ++-+.++++.- ..+.-.+...++..++.+++.+..
T Consensus 37 ~~~~~ep~~s~~R~~~aK~~~l~~~iDD~yD~~gt~~E----l~~~t~ai~rwd~~~~~~lp~~mk~~~~~l~~~~~~~~ 112 (284)
T cd00868 37 AGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEE----LELFTEAVERWDISAIDELPEYMKPVFKALYDLVNEIE 112 (284)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98655801499999999999999999887404788999----99999999827940001086599999999999999999
Q ss_pred CC-------------HHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCHH-------HH
Q ss_conf 99-------------8999999999985305---888899899999864433799999998--40343034-------55
Q gi|254780161|r 112 LP-------------NQYFLDMIEAHFFDSY---NDSIFDCKQFEHYAFRISSRLIHLATM--ILDSERYS-------AS 166 (299)
Q Consensus 112 l~-------------~~~l~~lid~~~~Dl~---~~~~~t~~~L~~Y~~~~ag~vg~l~~~--i~~~~~~~-------~~ 166 (299)
-. ++.+.+++.+...... ....++.+|.......+.|.-..++.. .+|..... ..
T Consensus 113 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~Ea~w~~~~~~Ps~~EYl~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 192 (284)
T cd00868 113 EELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSFLGMGDILPEEAFEWLPSY 192 (284)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCC
T ss_conf 99998359068999999999999999999999964989988999875042302899999999957888769999752026
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 76688999999899887224787634887-346789996399977852468998799999999999999999999644-5
Q gi|254780161|r 167 LRVIKYAGIAQFIGQLICQLPIHYHRGQL-YFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEM-R 244 (299)
Q Consensus 167 ~~~a~~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~-~ 244 (299)
.......+...-|.|=+..-.....+|++ -...-.|.++|+++++ ....+..+++.+...+.+-.... .
T Consensus 193 ~~l~~~~~~i~rL~NDi~s~~~E~~~g~~~~~v~~ym~e~~~t~ee---------A~~~i~~~i~~~~k~ln~~~~~~~~ 263 (284)
T cd00868 193 PKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEE---------ALEELRKMIEEAWKELNEEVLKLSS 263 (284)
T ss_pred HHHHHHHHHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4999999989999600045424110476412799987148999999---------9999999999999999999855799
Q ss_pred HCCHHHH
Q ss_conf 2899999
Q gi|254780161|r 245 YILPDVF 251 (299)
Q Consensus 245 ~lp~~~r 251 (299)
.+|+...
T Consensus 264 ~~p~~~~ 270 (284)
T cd00868 264 DVPRAVL 270 (284)
T ss_pred CCCHHHH
T ss_conf 8999999
No 20
>cd00687 Terpene_cyclase_nonplant_C1 NonPlant Terpene Cyclases, Class 1 (C1). This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are foun
Probab=71.07 E-value=7.1 Score=18.19 Aligned_cols=198 Identities=13% Similarity=0.071 Sum_probs=107.2
Q ss_pred HHHHHHCCHHHHH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHH
Q ss_conf 7998859988806---8999999999997760367882589999999999999774017---898689899999999986
Q gi|254780161|r 36 YLACLLSPPLYRI---SLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGL---IAESISPFSVELLSIVRQ 109 (299)
Q Consensus 36 y~a~~~lP~~~R~---~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~---~~~~~~Pv~~aL~~~~~~ 109 (299)
.+++.+.|.-..+ -+.-+.++.-..||.-|+........ ......+..+..+. ...+..|+..+|.+...+
T Consensus 45 ~~~a~~~P~a~~e~L~l~~~~~~w~F~~DD~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pl~~~l~dl~~r 121 (303)
T cd00687 45 DLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDG---EAGVTRLLDILRGDGLDSPDDATPLEFGLADLWRR 121 (303)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 889886899998999999999999998526545667788889---99999999986267888889998799999999999
Q ss_pred C--CCCHHHHHHH-------HHHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHHH-HHH-CCCCC------HHHHHHH
Q ss_conf 1--8998999999-------999985305---8888998999998644337999999-984-03430------3455766
Q gi|254780161|r 110 Y--DLPNQYFLDM-------IEAHFFDSY---NDSIFDCKQFEHYAFRISSRLIHLA-TMI-LDSER------YSASLRV 169 (299)
Q Consensus 110 ~--~l~~~~l~~l-------id~~~~Dl~---~~~~~t~~~L~~Y~~~~ag~vg~l~-~~i-~~~~~------~~~~~~~ 169 (299)
- ..+..+..++ +++..+... ...+++.++...+=..+.|.-..+. .+. .|..- .+.....
T Consensus 122 ~~~~~~~~~~~rf~~~~~~~~~a~~~E~~~r~~~~~ps~~eY~~~R~~~~g~~~~~~l~e~~~g~~lp~~v~~~p~~~~l 201 (303)
T cd00687 122 TLARMSAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGLSEFIGGPEVPAAVRLDPVMRAL 201 (303)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCHHHHHH
T ss_conf 86569999999999999999999999999987489989999999976445570699999998488899999849799999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHC-CC-CCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999899887224787634-88-73467899963999778524689987999999999999999999996445289
Q gi|254780161|r 170 IKYAGIAQFIGQLICQLPIHYHR-GQ-LYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYIL 247 (299)
Q Consensus 170 a~~lG~A~ql~niLRdi~~d~~~-gr-~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp 247 (299)
....+....++|=+-..+...+. |. .-+..-++..+|++.++ ++..+.+..+..+.........+|
T Consensus 202 ~~~~~~~v~~~NDi~S~~KE~~~~g~~~Nlv~vl~~~~g~~~~e------------A~~~~~~l~~~~~~~f~~~~~~l~ 269 (303)
T cd00687 202 EALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEE------------AISVVRDMHNERITQFEELEASLI 269 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998789888889850588741999999823979999------------999999999999999999999766
Q ss_pred H
Q ss_conf 9
Q gi|254780161|r 248 P 248 (299)
Q Consensus 248 ~ 248 (299)
+
T Consensus 270 ~ 270 (303)
T cd00687 270 K 270 (303)
T ss_pred H
T ss_conf 3
No 21
>KOG2911 consensus
Probab=66.78 E-value=8.7 Score=17.61 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=46.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88599888068999999999997760367882589999999999999774017898689899999999986189989999
Q gi|254780161|r 39 CLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDLPNQYFL 118 (299)
Q Consensus 39 ~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~l~~~~l~ 118 (299)
+.++|++- ...-.+|+..+ +..+ -+|..-..++++|+|.+.. +....+.+.--|++-|+...++.+--+..+.
T Consensus 10 ~~~~~pew-~d~~~~~~~f~---~~r~--~n~~gydak~~fWrdlI~~-~s~~~g~~if~~lr~lq~~F~r~~~vPlsLd 82 (439)
T KOG2911 10 AEFLVPEW-DDLTVLKALFS---KLRH--LNPEGYDAKMNFWRDLILK-YSRKSGRRIFLVLRTLQELFSRGGGVPLSLD 82 (439)
T ss_pred CCCCCCCC-HHHHHHHHHHH---HHHH--CCHHHHHHHHHHHHHHHHH-HHHHCCCEEEEHHHHHHHHHCCCCCCCCCHH
T ss_conf 20478731-04889998766---7650--6827677676579999999-9633597475278889998541799674299
Q ss_pred HHHHHHHH
Q ss_conf 99999985
Q gi|254780161|r 119 DMIEAHFF 126 (299)
Q Consensus 119 ~lid~~~~ 126 (299)
..|+-+.+
T Consensus 83 ~Vi~~l~~ 90 (439)
T KOG2911 83 TVIDYLIQ 90 (439)
T ss_pred HHHHHHHH
T ss_conf 99999986
No 22
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase; InterPro: IPR014120 This entry contains solanesyl diphosphate synthases from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterised by heterologous expression as a solanesyl diphosphate synthase..
Probab=64.22 E-value=9.7 Score=17.28 Aligned_cols=207 Identities=14% Similarity=0.065 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHH----HCCCHHHHHH-HC---CHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHH-
Q ss_conf 99999999999985----2813879988-59---988806899999999999776036-78825899999999999997-
Q gi|254780161|r 17 FSRDSLFVLRNLRD----IDYDRYLACL-LS---PPLYRISLSFLYYFHTELMRVRDT-ARNPITRDMRLQWWKDIFES- 86 (299)
Q Consensus 17 ~~~d~~~c~~~lr~----~d~~~y~a~~-~l---P~~~R~~~~alyaf~re~d~i~d~-~~~~~~~~~rL~~w~~~l~~- 86 (299)
+++|+..-.+-||+ .-|--|-|.- ++ -++.||++.-|-+= +...+. ..+...+..||...-|.|+=
T Consensus 10 Ve~dL~~l~~NLk~lvGa~HPiL~AAAEHLF~AGGKR~RPaiVLLvSr----AT~~~~GlkElt~~HRRLAEITEmIHTA 85 (325)
T TIGR02749 10 VEDDLELLTDNLKSLVGARHPILYAAAEHLFSAGGKRLRPAIVLLVSR----ATAEEQGLKELTARHRRLAEITEMIHTA 85 (325)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH----HHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999999999877873145686789999998715896540689999999----9887366635761035313368677523
Q ss_pred ------HH----HCCCCCCCC-------------H-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-------CCCCC
Q ss_conf ------74----017898689-------------8-99999999986189989999999999853058-------88899
Q gi|254780161|r 87 ------ST----KGLIAESIS-------------P-FSVELLSIVRQYDLPNQYFLDMIEAHFFDSYN-------DSIFD 135 (299)
Q Consensus 87 ------~~----~~~~~~~~~-------------P-v~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~-------~~~~t 135 (299)
+- --++.+--| - +.++=+... +|.-=.+.++|.-..+|... .+|.+
T Consensus 86 SLVHDDV~DEsd~RRG~~TVhs~F~trvAVLAGDFLFAQaSWYLA---NLenLEVVKLls~VI~DFAEGEI~Qg~~~FD~ 162 (325)
T TIGR02749 86 SLVHDDVIDESDVRRGVETVHSLFGTRVAVLAGDFLFAQASWYLA---NLENLEVVKLLSKVITDFAEGEIKQGLNRFDS 162 (325)
T ss_pred HHHCCCEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH---CCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 222022003543448885534568481676204067899999986---16772100145478756411788865552578
Q ss_pred HHHHHHHHH----HHHHHHHHH--HHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHCCCCCCCHHHHHHC
Q ss_conf 899999864----433799999--9984034---30345576688999999899887224787-6348873467899963
Q gi|254780161|r 136 CKQFEHYAF----RISSRLIHL--ATMILDS---ERYSASLRVIKYAGIAQFIGQLICQLPIH-YHRGQLYFPLDILGAV 205 (299)
Q Consensus 136 ~~~L~~Y~~----~~ag~vg~l--~~~i~~~---~~~~~~~~~a~~lG~A~ql~niLRdi~~d-~~~gr~yLP~~~l~~~ 205 (299)
--+++.|.+ .||+-+.-- .+-+++. ..-+.++.+-+|+|.|||+++=+=|+--- ..-|+ =-..+|.+=
T Consensus 163 d~~le~YleKSyYKTASL~AaSskaAAvLS~~~~~v~n~LY~yGkhLGLAFQvvDDiLDFTgsTe~LGK--PagsDL~~G 240 (325)
T TIGR02749 163 DLSLEDYLEKSYYKTASLVAASSKAAAVLSDVDSKVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGK--PAGSDLKKG 240 (325)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC--CCHHHHCCC
T ss_conf 878887665644678999999989988851143899999877656616335445545157788511567--514343057
Q ss_pred CCCHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 999778524689987999999999999
Q gi|254780161|r 206 GLDRESFLSGQNSDRISLAIKIFAELG 232 (299)
Q Consensus 206 gv~~e~l~~~~~~~~~~~~~~~~~~~A 232 (299)
++|.--+++.+.+|.+..+++..-+..
T Consensus 241 NlTAPvLfALE~~p~L~~LIer~F~~~ 267 (325)
T TIGR02749 241 NLTAPVLFALEEEPKLSELIEREFSQK 267 (325)
T ss_pred CCCHHHHHHHCCCCCCCHHHCCCCCCC
T ss_conf 851579986237887201201113781
No 23
>PRK10490 sensor protein KdpD; Provisional
Probab=51.07 E-value=16 Score=15.83 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 8998999999999985305888
Q gi|254780161|r 111 DLPNQYFLDMIEAHFFDSYNDS 132 (299)
Q Consensus 111 ~l~~~~l~~lid~~~~Dl~~~~ 132 (299)
+.-...+..++.....|..+.+
T Consensus 444 G~~pal~AAvlSvl~fNfFFt~ 465 (895)
T PRK10490 444 GRWPSVVATVINVASFDLFFIA 465 (895)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 6399999999999999872047
No 24
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein; InterPro: IPR014057 Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within the helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module..
Probab=49.65 E-value=17 Score=15.68 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHH---CCCCCH
Q ss_conf 43379999999840343--0345576688999999899887224787634887346789996399977852---468998
Q gi|254780161|r 145 RISSRLIHLATMILDSE--RYSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFL---SGQNSD 219 (299)
Q Consensus 145 ~~ag~vg~l~~~i~~~~--~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~---~~~~~~ 219 (299)
.+...|-..+..++.-. ++.-..++-.++.+|=|+|.+.| +-|++.|+|. ++..+|
T Consensus 12 ~~~E~~a~YL~~a~e~gGdDp~~~~~ALG~iArArGMtqlA~-------------------~tGlsREsLYkALs~~GnP 72 (91)
T TIGR02684 12 KTDEEVAEYLAQALEDGGDDPALIAAALGVIARARGMTQLAK-------------------KTGLSRESLYKALSGGGNP 72 (91)
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHH-------------------HHCCCHHHHHHHHCCCCCC
T ss_conf 687899999999974369998899999889986516578999-------------------8287678878873568895
Q ss_pred HHHHHHHH
Q ss_conf 79999999
Q gi|254780161|r 220 RISLAIKI 227 (299)
Q Consensus 220 ~~~~~~~~ 227 (299)
.+..+++=
T Consensus 73 ~f~T~lkV 80 (91)
T TIGR02684 73 TFDTILKV 80 (91)
T ss_pred CHHHHHHH
T ss_conf 66888999
No 25
>KOG2582 consensus
Probab=48.51 E-value=17 Score=15.57 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9888068999999999997760367882589999999999999774017-898689899999999986189989999999
Q gi|254780161|r 43 PPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGL-IAESISPFSVELLSIVRQYDLPNQYFLDMI 121 (299)
Q Consensus 43 P~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~-~~~~~~Pv~~aL~~~~~~~~l~~~~l~~li 121 (299)
-++.|-+...+++.|+.+.+..-....|..|..-+ ..+++...... ..++.|+..-++.--.+.|.-....+..-|
T Consensus 91 ~eqlr~as~~f~~lc~~l~~~~~~~~~p~~gi~ii---~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~di 167 (422)
T KOG2582 91 GEQLRLASEIFFPLCHDLTEAVVKKNKPLRGIRII---MQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDI 167 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 58776579999999999999998359964461479---999998401766210657999999987202023588533038
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99985305888899899999864433
Q gi|254780161|r 122 EAHFFDSYNDSIFDCKQFEHYAFRIS 147 (299)
Q Consensus 122 d~~~~Dl~~~~~~t~~~L~~Y~~~~a 147 (299)
..- ....+.-+-..+..|||+.+
T Consensus 168 vei---~~~n~h~~~k~fL~Y~yYgg 190 (422)
T KOG2582 168 VEI---CKANPHLDPKYFLLYLYYGG 190 (422)
T ss_pred HHH---HCCCCCCCHHHHHHHHHHCC
T ss_conf 888---50477787899999997321
No 26
>pfam03936 Terpene_synth_C Terpene synthase family, metal binding domain. It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase.
Probab=46.51 E-value=19 Score=15.37 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=84.3
Q ss_pred HHHHHCCH--HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99885998--8806899999999999776036788258999999999999977---401789868989999999998618
Q gi|254780161|r 37 LACLLSPP--LYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESS---TKGLIAESISPFSVELLSIVRQYD 111 (299)
Q Consensus 37 ~a~~~lP~--~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~---~~~~~~~~~~Pv~~aL~~~~~~~~ 111 (299)
.++.|-|. ..|..+.-+.++.-.+||+-|..+.... |+-.-++++.= ..+...+...++..++.++..+..
T Consensus 51 ~~~~feP~~s~~R~~~aK~~~l~t~iDD~~D~~gt~eE----l~~ft~av~rWd~~~~~~lp~~~k~~~~~l~~~~~e~~ 126 (270)
T pfam03936 51 AASYFEPQYSDARIAAAKTAALLTVIDDTYDRYGTLEE----LELFTDAVERWDISAIDELPDYMKIVFKALLDTVEEIE 126 (270)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 98664822488999999999999974311104688999----99999999816932000087889999999999999999
Q ss_pred ---------C-----CHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHH--
Q ss_conf ---------9-----98999999999985305---888899899999864433799999998403430--34557668--
Q gi|254780161|r 112 ---------L-----PNQYFLDMIEAHFFDSY---NDSIFDCKQFEHYAFRISSRLIHLATMILDSER--YSASLRVI-- 170 (299)
Q Consensus 112 ---------l-----~~~~l~~lid~~~~Dl~---~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~--~~~~~~~a-- 170 (299)
. -++.+.+++.+...... ....+|+++......-+.|.-..++...++... ........
T Consensus 127 ~~~~~~~g~~~~~~~l~~~w~~l~~~~l~Ea~W~~~~~vPt~~EYl~~~~~s~~~~~~~~~~~~~m~~~~~~e~~~~~~~ 206 (270)
T pfam03936 127 KELSKEQGRSYIVPYLKEAWKDLLEAYLEEAKWAKGGHVPSFEEYLENGRVSIGAPLLLLLSFLGMGDSSGEEAFEWLKS 206 (270)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999749421899999999999999999999995597998999987206763259999999992788878999998863
Q ss_pred -HHHHHHHHHHHHH----HCCHHHHHCCCC-CCCHHHHHHCCCCHHH
Q ss_conf -8999999899887----224787634887-3467899963999778
Q gi|254780161|r 171 -KYAGIAQFIGQLI----CQLPIHYHRGQL-YFPLDILGAVGLDRES 211 (299)
Q Consensus 171 -~~lG~A~ql~niL----Rdi~~d~~~gr~-yLP~~~l~~~gv~~e~ 211 (299)
..+-.+.++++-| .......++|.+ --=.-.|..||+++++
T Consensus 207 ~p~~~~~~~~i~RL~nDi~s~~~E~~~g~~~s~i~~ym~e~g~seee 253 (270)
T pfam03936 207 RPKLVQLSSLILRLLNDIASYEKEMARGEVANSIECYMKEYGVTEEE 253 (270)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHH
T ss_conf 52899999999997024157786870797112999995567979999
No 27
>CHL00151 preA prenyl transferase; Reviewed
Probab=45.03 E-value=20 Score=15.22 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=58.5
Q ss_pred HHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCC---HHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 999999853--05888899899999864433799999998---403430---3455766889999998998872247876
Q gi|254780161|r 119 DMIEAHFFD--SYNDSIFDCKQFEHYAFRISSRLIHLATM---ILDSER---YSASLRVIKYAGIAQFIGQLICQLPIHY 190 (299)
Q Consensus 119 ~lid~~~~D--l~~~~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~---~~~~~~~a~~lG~A~ql~niLRdi~~d~ 190 (299)
.+.+|...+ .....-.+.+++..-++.--|++...++. +++..+ .........++|.|||+.+=+-|+-.|.
T Consensus 145 ~l~~g~~~~~~~~~~~~~~~~~y~~~~~~KTa~Lf~~a~~~gailaga~~~~~~~l~~~G~~lG~AFQI~DDlLD~~gd~ 224 (288)
T CHL00151 145 DLAEGEIRQGLVQFDTTLSTLEYIEKSFYKTASLLAASCKAAALLSDADEELLNDLYLYGKHLGLAFQIIDDILDITGST 224 (288)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCH
T ss_conf 99988898776425888789999999985207999999999999809999999999998641311455349754035898
Q ss_pred HC-CCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 34-88734678999639997785246899879999999999999999999964452899
Q gi|254780161|r 191 HR-GQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILP 248 (299)
Q Consensus 191 ~~-gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 248 (299)
+. |+- .-.|+..|..|=-+--.+++-..++.....++.+.+.....
T Consensus 225 ~~~GK~------------~g~Dl~eGK~Tlp~l~ale~~~~~~~~l~~~a~~~l~~~~~ 271 (288)
T CHL00151 225 ESLGKP------------AGSDLKNGNLTAPVLFALEQSSKLAELIEREFCEGILPPSE 271 (288)
T ss_pred HHHCCC------------CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 997899------------11477759841999999998599999999999997651473
No 28
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=44.81 E-value=8.6 Score=17.64 Aligned_cols=22 Identities=5% Similarity=0.229 Sum_probs=18.2
Q ss_pred HHHHHHHCCHHHHHCCCCCCCH
Q ss_conf 8998872247876348873467
Q gi|254780161|r 178 FIGQLICQLPIHYHRGQLYFPL 199 (299)
Q Consensus 178 ql~niLRdi~~d~~~gr~yLP~ 199 (299)
=++|-+||+.+|.+.||.-||-
T Consensus 193 l~aNNirDie~D~~~gk~TLav 214 (303)
T COG1575 193 LLANNLRDIEEDIRNGKYTLAV 214 (303)
T ss_pred HHHCCCCCCHHHHHCCCCCEEE
T ss_conf 9862133450178669601134
No 29
>pfam05389 MecA Negative regulator of genetic competence (MecA). This family contains several bacterial MecA proteins. The development of competence in Bacillus subtilis is regulated by growth conditions and several regulatory genes. In complex media competence development is poor, and there is little or no expression of late competence genes. Mec mutations permit competence development and late competence gene expression in complex media, bypassing the requirements for many of the competence regulatory genes. The mecA gene product acts negatively in the development of competence. Null mutations in mecA allow expression of a late competence gene comG, under conditions where it is not normally expressed, including in complex media and in cells mutant for several competence regulatory genes. Overexpression of MecA inhibits comG transcription.
Probab=40.96 E-value=23 Score=14.80 Aligned_cols=11 Identities=0% Similarity=0.404 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999774
Q gi|254780161|r 78 QWWKDIFESST 88 (299)
Q Consensus 78 ~~w~~~l~~~~ 88 (299)
+++++.++.+.
T Consensus 39 ~fF~~mm~ea~ 49 (212)
T pfam05389 39 EFFYSMMDEVD 49 (212)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999864
No 30
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 (C1). This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal
Probab=35.65 E-value=27 Score=14.26 Aligned_cols=203 Identities=14% Similarity=0.087 Sum_probs=98.9
Q ss_pred HHHHHCC--HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9988599--8880689999999999977603678825899---9999999999977401789868989999999998618
Q gi|254780161|r 37 LACLLSP--PLYRISLSFLYYFHTELMRVRDTARNPITRD---MRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYD 111 (299)
Q Consensus 37 ~a~~~lP--~~~R~~~~alyaf~re~d~i~d~~~~~~~~~---~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~ 111 (299)
.++.|=| ...|..+.-+.++...+||+-|.......-+ .-+++|-.. .+. .-++-...+..++..++....
T Consensus 271 ~~~~fEPq~s~~Ri~~aK~~~l~tiiDD~yD~ygT~eEl~~ft~ai~rWD~~--~~~--~lpeymk~~f~al~~~~~ei~ 346 (542)
T cd00684 271 AGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDIS--AID--QLPEYMKIVFKALLNTVNEIE 346 (542)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH--HHC--CCCHHHHHHHHHHHHHHHHHH
T ss_conf 9851681016999999999999999987721578899999999999846802--001--086899999999999999999
Q ss_pred -----------C--CHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHH----
Q ss_conf -----------9--98999999999985305---88889989999986443379999999840343--03455766----
Q gi|254780161|r 112 -----------L--PNQYFLDMIEAHFFDSY---NDSIFDCKQFEHYAFRISSRLIHLATMILDSE--RYSASLRV---- 169 (299)
Q Consensus 112 -----------l--~~~~l~~lid~~~~Dl~---~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~--~~~~~~~~---- 169 (299)
+ -++.+.+++.+...+.. ....+|++|...-..-+.|.-..++...++.. ......+.
T Consensus 347 ~~~~~~~~~~~~~~l~~~~~~l~~~yl~EAkW~~~gyvPt~eEYl~~~~iS~~~~~~~~~~~~~mg~~~~~e~~e~~~~~ 426 (542)
T cd00684 347 EELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESR 426 (542)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
T ss_conf 99998258458999999999999999999999834969999999872335542999999999817887779999978507
Q ss_pred ---HHHHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf ---88999999899887224787634887-34678999639997785246899879999999999999999999964-45
Q gi|254780161|r 170 ---IKYAGIAQFIGQLICQLPIHYHRGQL-YFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREE-MR 244 (299)
Q Consensus 170 ---a~~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~-~~ 244 (299)
.+..+.-.-|.|=+..-.....+|.+ ---.--|.++|+++|+ ...-+..+++.+..-+.+-.-. ..
T Consensus 427 p~i~~~~~~i~RL~nDi~t~~~E~~rg~v~ssv~cymke~g~seee---------A~~~i~~~ie~~wk~ln~e~l~~~~ 497 (542)
T cd00684 427 PKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEE---------AREEIKKMIEDAWKELNEEFLKPSS 497 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 2999999999998653146576751697502999997046998999---------9999999999999999999805799
Q ss_pred HCCHHHHH
Q ss_conf 28999999
Q gi|254780161|r 245 YILPDVFP 252 (299)
Q Consensus 245 ~lp~~~r~ 252 (299)
.+|+.+.-
T Consensus 498 ~vp~~~~~ 505 (542)
T cd00684 498 DVPRPIKQ 505 (542)
T ss_pred CCCHHHHH
T ss_conf 99999999
No 31
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=29.42 E-value=24 Score=14.66 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCCHHHHHCCCCCCCH
Q ss_conf 9998998872247876348873467
Q gi|254780161|r 175 IAQFIGQLICQLPIHYHRGQLYFPL 199 (299)
Q Consensus 175 ~A~ql~niLRdi~~d~~~gr~yLP~ 199 (299)
.+.-++|-+||+.+|.+.||.-+|.
T Consensus 203 ~~IL~~NN~rD~e~D~~~gk~TL~v 227 (317)
T PRK13387 203 ANIMLANNLRDLDEDIKNHRYTLVY 227 (317)
T ss_pred HHHHHHCCCCCHHHHHHCCCEEEEE
T ss_conf 9999856575136699769801798
No 32
>PRK02899 adaptor protein; Provisional
Probab=27.74 E-value=36 Score=13.39 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 9999999977401789868989
Q gi|254780161|r 78 QWWKDIFESSTKGLIAESISPF 99 (299)
Q Consensus 78 ~~w~~~l~~~~~~~~~~~~~Pv 99 (299)
+++.+.++.+...-......||
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~gpl 60 (199)
T PRK02899 39 QLFRDMMQEANKELGFEADGPI 60 (199)
T ss_pred HHHHHHHHHHHHHCCCCCCCCE
T ss_conf 9999999997772494338938
No 33
>KOG2116 consensus
Probab=26.96 E-value=38 Score=13.30 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999688872458986896679999999986277
Q gi|254780161|r 249 DVFPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIKKR 298 (299)
Q Consensus 249 ~~r~~~l~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~~~~~~ 298 (299)
.+| ++-++-.++.||.-+...|+.+-++++-++|-..+--|.|-.++++
T Consensus 581 SAR-aIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~Rk 629 (738)
T KOG2116 581 SAR-AIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERK 629 (738)
T ss_pred EHH-HHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHC
T ss_conf 414-5200477899999887547518999877675203799999998708
No 34
>KOG0781 consensus
Probab=26.18 E-value=39 Score=13.21 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999774017898--689899999999986189989999999999853058888998999998644337999999
Q gi|254780161|r 77 LQWWKDIFESSTKGLIAE--SISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLA 154 (299)
Q Consensus 77 L~~w~~~l~~~~~~~~~~--~~~Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~ 154 (299)
..||-..+.++..++... .-.||+..+..-+-..++..+.-..+.+....+|++.-..++...+.- +-.++-.-+
T Consensus 277 ~g~aFg~fkglvG~K~L~eeDL~pvL~km~ehLitKNVA~eiA~~LcesV~a~Legkkv~sfs~V~~T---vk~Al~daL 353 (587)
T KOG0781 277 VGGAFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVEST---VKEALRDAL 353 (587)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHH
T ss_conf 24589988863155644475669999999999876201289999999999998510210450277899---999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHC--------CC------CCHH
Q ss_conf 984034303455766889999998998872247876348873467899963999778524--------68------9987
Q gi|254780161|r 155 TMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLS--------GQ------NSDR 220 (299)
Q Consensus 155 ~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~--------~~------~~~~ 220 (299)
.+|+.+.. -+++||||..--+++|-|.=. .+.=.||....-++ .. .-+-
T Consensus 354 vQILTP~~----------------sVDlLrdI~~ar~~krPYvi~-fvGVNGVGKSTNLAKIayWLlqNkfrVlIAACDT 416 (587)
T KOG0781 354 VQILTPQR----------------SVDLLRDIMSARRRKRPYVIS-FVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDT 416 (587)
T ss_pred HHHCCCCC----------------HHHHHHHHHHHHHCCCCEEEE-EEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98738873----------------066999999987468975999-9821476651329999999985783699986243
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999-99999999999999999644528999999999999999999999968887245
Q gi|254780161|r 221 ISL-AIKIFAELGLKYLFKAREEMRYILPDVFPAFIPVSITESVLKHAQNHGFKIVS 276 (299)
Q Consensus 221 ~~~-~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~l~~~~~~~~L~~l~~~~~~v~~ 276 (299)
||+ +++++...+++.-.-....+....+.. --=++..+..-.+..+..+|||.-
T Consensus 417 FRsGAvEQLrtHv~rl~~l~~~~v~lfekGY--gkd~a~vak~AI~~a~~~gfDvvL 471 (587)
T KOG0781 417 FRSGAVEQLRTHVERLSALHGTMVELFEKGY--GKDAAGVAKEAIQEARNQGFDVVL 471 (587)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 1244789999999999874552048886104--778289999999999866987899
No 35
>PRK00326 cell division protein MraZ; Reviewed
Probab=24.10 E-value=30 Score=13.98 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=23.0
Q ss_pred HCCCCCCCHHHHHHCCCCHHHHHCCCC
Q ss_conf 348873467899963999778524689
Q gi|254780161|r 191 HRGQLYFPLDILGAVGLDRESFLSGQN 217 (299)
Q Consensus 191 ~~gr~yLP~~~l~~~gv~~e~l~~~~~ 217 (299)
.+||+-||....+..|++.+-+.-|..
T Consensus 87 ~~GRi~lP~~lr~~agi~~evv~vG~g 113 (147)
T PRK00326 87 KQGRILIPPNLREYAGLEKEVVLVGQG 113 (147)
T ss_pred CCCCEECCHHHHHHHCCCCEEEEEECC
T ss_conf 987186899999984998709999479
No 36
>KOG0808 consensus
Probab=24.06 E-value=38 Score=13.26 Aligned_cols=21 Identities=14% Similarity=0.157 Sum_probs=9.7
Q ss_pred HHHHHHH---HHHHHHHHHHCCCC
Q ss_conf 9999999---99999999968887
Q gi|254780161|r 253 AFIPVSI---TESVLKHAQNHGFK 273 (299)
Q Consensus 253 ~~l~~~~---~~~~L~~l~~~~~~ 273 (299)
-|.|..- |...|.+.-+.||.
T Consensus 357 gfrmt~ryemya~~lae~~kpdy~ 380 (387)
T KOG0808 357 GFRMTARYEMYADLLAEYIKPDYK 380 (387)
T ss_pred CCEEHHHHHHHHHHHHHHHCCCCC
T ss_conf 505213499999999987188889
No 37
>KOG4825 consensus
Probab=22.91 E-value=45 Score=12.80 Aligned_cols=198 Identities=18% Similarity=0.180 Sum_probs=95.8
Q ss_pred HHHCCHHHHHHHHHHHHHHHH--HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 885998880689999999999--977603678825899999999999997740178986898999999999861899899
Q gi|254780161|r 39 CLLSPPLYRISLSFLYYFHTE--LMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDLPNQY 116 (299)
Q Consensus 39 ~~~lP~~~R~~~~alyaf~re--~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~l~~~~ 116 (299)
.-..|+.++.++.++-....+ ++.|-..--+. ...-....|++|+++-+.+...+ -.+..++-.+-|+...
T Consensus 403 lcktppdqedallaaikkfgeePiakikedhfen--lkagieeiReaIddisaekfqas-----felikciiahlikehk 475 (666)
T KOG4825 403 LCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFEN--LKAGIEEIREAIDDISAEKFQAS-----FELIKCIIAHLIKEHK 475 (666)
T ss_pred HHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCHHH
T ss_conf 7529964013599999985507644226888888--98789999999988889999999-----9999999998701222
Q ss_pred HHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHH-HHHHHCCCCCH------HHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999853058--8889989999986443379999-99984034303------455766889999998998872247
Q gi|254780161|r 117 FLDMIEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIH-LATMILDSERY------SASLRVIKYAGIAQFIGQLICQLP 187 (299)
Q Consensus 117 l~~lid~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~-l~~~i~~~~~~------~~~~~~a~~lG~A~ql~niLRdi~ 187 (299)
|..+=++.-..-.. -..+| -+++.|...||+..-+ |++........ .....+.....+|.--.+.|-.+-
T Consensus 476 fskledahclehhfctlllpn-gdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarll 554 (666)
T KOG4825 476 FSKLEDAHCLEHHFCTLLLPN-GDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLL 554 (666)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 225557778877513431678-8789999999999999999998754330255765011346766078987767999988
Q ss_pred HHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 87634887346789996399977852468998799999999999999999999644528999
Q gi|254780161|r 188 IHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299)
Q Consensus 188 ~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299)
.|...||--+-.+.-.+|||+.+. ...++.....++..+.+.++|. ++...+.++++
T Consensus 555 kdlgkGragfiediakkfgVpaee---hglndkreaafaiicdmtrdhQ--arsIgedLmpd 611 (666)
T KOG4825 555 KDLGKGRAGFIEDIAKKFGVPAEE---HGLNDKREAAFAIICDMTRDHQ--ARSIGEDLMPD 611 (666)
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHCCCHH--HHHHHHHCCCC
T ss_conf 760778610028779882887654---4313788767653324304577--77777642864
No 38
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=21.85 E-value=47 Score=12.66 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCHHHHHCCCCCCCH
Q ss_conf 999998998872247876348873467
Q gi|254780161|r 173 AGIAQFIGQLICQLPIHYHRGQLYFPL 199 (299)
Q Consensus 173 lG~A~ql~niLRdi~~d~~~gr~yLP~ 199 (299)
+..+.-++|-+||+.+|.+.||.-+|.
T Consensus 186 ~~~~iL~~Nn~rD~e~D~~~Gk~TL~v 212 (300)
T PRK06080 186 LAGAVLLANNIRDIETDRENGKNTLAV 212 (300)
T ss_pred HHHHHHHHHCCHHHHHHHHCCCCEEEE
T ss_conf 898999984642017799869931673
Done!