Query gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 299 No_of_seqs 140 out of 1367 Neff 8.3 Searched_HMMs 33803 Date Mon May 23 00:06:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780161.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ezf_A Farnesyl-diphosphate f 100.0 1.1E-33 3.4E-38 246.8 12.2 165 133-297 1-171 (209) 2 >2zco_A Dehydrosqualene syntha 100.0 8.3E-29 2.5E-33 213.8 17.1 134 113-246 1-134 (134) 3 >1ezf_A Farnesyl-diphosphate f 99.9 1.8E-24 5.3E-29 184.4 1.7 126 15-145 4-130 (131) 4 >2zco_A Dehydrosqualene syntha 99.8 3.5E-21 1E-25 162.2 7.8 102 11-115 4-108 (159) 5 >1v4e_A Octoprenyl-diphosphate 97.5 0.0017 5.1E-08 42.2 10.9 136 115-250 10-165 (175) 6 >2q80_A Geranylgeranyl pyropho 96.7 0.042 1.2E-06 32.9 10.8 131 115-246 10-171 (173) 7 >3ipi_A Geranyltranstransferas 96.4 0.075 2.2E-06 31.2 11.3 121 115-246 134-266 (295) 8 >3lmd_A Geranylgeranyl pyropho 96.0 0.12 3.5E-06 29.9 14.7 138 114-251 166-336 (360) 9 >2zco_A Dehydrosqualene syntha 95.5 0.18 5.4E-06 28.5 10.9 141 132-296 6-154 (159) 10 >2azj_A Geranylgeranyl pyropho 94.4 0.16 4.8E-06 28.9 6.7 80 115-199 10-109 (157) 11 >2her_A Fragment, farnesyl pyr 94.4 0.36 1.1E-05 26.6 17.9 139 115-254 175-344 (368) 12 >1di1_A Aristolochene synthase 94.0 0.42 1.2E-05 26.1 19.3 201 37-250 49-274 (300) 13 >1ps1_A Pentalenene synthase; 93.9 0.43 1.3E-05 26.0 20.5 173 37-211 53-250 (337) 14 >5eau_A 5-EPI-aristolochene sy 92.6 0.69 2E-05 24.6 18.8 204 35-251 12-246 (267) 15 >2ftz_A Geranyltranstransferas 92.3 0.74 2.2E-05 24.4 11.2 77 115-191 11-93 (136) 16 >1wy0_A Geranylgeranyl pyropho 91.2 0.98 2.9E-05 23.6 18.4 136 115-250 144-325 (342) 17 >2j1p_A Geranylgeranyl pyropho 91.1 0.43 1.3E-05 26.0 5.0 80 120-199 162-261 (293) 18 >2e8v_A Geranylgeranyl pyropho 90.9 0.53 1.6E-05 25.4 5.3 105 165-269 4-141 (146) 19 >1rqj_A Geranyltranstransferas 90.7 1.1 3.2E-05 23.4 9.0 117 120-248 154-279 (299) 20 >2qis_A Farnesyl pyrophosphate 90.1 1.2 3.6E-05 23.0 7.9 93 163-255 6-123 (134) 21 >2h8o_A Geranyltranstransferas 89.8 1.3 3.7E-05 22.9 8.6 106 132-249 207-319 (335) 22 >2ihi_A Pyrophosphate synthase 89.5 1.3 4E-05 22.7 10.4 86 121-206 43-149 (204) 23 >1rtr_A Geranyltranstransferas 86.2 2.1 6.2E-05 21.4 16.2 106 130-247 161-273 (301) 24 >1uby_A FPS, farnesyl diphosph 85.1 2.4 7E-05 21.0 6.0 92 163-254 6-122 (134) 25 >1wmw_A Geranylgeranyl diphosp 79.8 3.7 0.00011 19.7 7.4 42 163-204 2-53 (115) 26 >3dyh_A Farnesyl pyrophosphate 78.9 3.9 0.00012 19.5 9.3 87 163-249 4-114 (134) 27 >1yhl_A Farnesyl pyrophosphate 68.0 7.1 0.00021 17.8 9.1 86 163-248 4-113 (134) 28 >3bny_A Aristolochene synthase 64.0 8.5 0.00025 17.3 21.3 172 36-211 62-258 (320) 29 >3lji_A Geranyltranstransferas 60.7 9.6 0.00028 16.9 11.6 105 133-249 168-280 (304) 30 >2ong_A 4S-limonene synthase; 52.8 13 0.00038 16.0 13.7 111 134-253 1-122 (140) 31 >3kra_B Geranyl diphosphate sy 43.6 18 0.00053 15.1 9.1 26 132-157 164-189 (274) 32 >1n1b_A (+)-bornyl diphosphate 33.8 25 0.00074 14.1 13.4 110 134-252 1-121 (141) 33 >1qle_C Cytochrome C oxidase p 24.4 36 0.0011 13.0 2.0 16 75-90 61-76 (77) 34 >1z72_A Transcriptional regula 24.3 36 0.0011 13.0 5.1 35 200-234 57-91 (92) 35 >1bed_A DSBA oxidoreductase; T 23.1 38 0.0011 12.8 4.0 37 199-235 45-81 (84) 36 >3k1z_A Haloacid dehalogenase- 20.9 42 0.0012 12.5 3.2 26 77-103 49-74 (84) 37 >1acv_A DSBA; disulfide oxidor 20.8 42 0.0013 12.5 3.0 35 200-234 46-80 (84) 38 >1gqi_A Alpha-glucuronidase; ( 20.4 43 0.0013 12.5 2.0 72 2-89 55-126 (340) No 1 >>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} (A:132-340) Probab=100.00 E-value=1.1e-33 Score=246.76 Aligned_cols=165 Identities=7% Similarity=0.040 Sum_probs=153.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCC Q ss_conf 899899999864433799999998403430-----345576688999999899887224787634887346789996399 Q gi|254780161|r 133 IFDCKQFEHYAFRISSRLIHLATMILDSER-----YSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGL 207 (299) Q Consensus 133 ~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~-----~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv 207 (299) .+|++||+.||++|||+||+|++.+++... .+...+.+.|+|.|+|+||||||+++|+++||+|||.|+|.+||+ T Consensus 1 i~t~~eL~~Yc~~vAg~vg~l~~~il~~~~~~~~~~~~~~~~A~~lG~AlqltniLRDi~~D~~~gr~yLP~e~L~~~gv 80 (209) T 1ezf_A 1 VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVK 80 (209) T ss_dssp CCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCSCHHHHTTTCS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCC T ss_conf 89999999999980269999999996768875120598999999999999999999976989957975686999988599 Q ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 9778524689987999999999999999999996445289999999999-999999999999688872458986896679 Q gi|254780161|r 208 DRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAFIP-VSITESVLKHAQNHGFKIVSHSHTPNQLVR 286 (299) Q Consensus 208 ~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~l~-~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~ 286 (299) +++++.+++.+++++.++++++++|+.||.+|+++.+.+|+..++++.+ ..++..+|.+++++||++|++++.++++++ T Consensus 81 ~~e~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~lp~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~r~~~~~~~~ 160 (209) T 1ezf_A 81 KLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQA 160 (209) T ss_dssp SGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCC----- T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHH T ss_conf 99998577688999999999999999999999999987896147899999999999999999679401278705509999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999998627 Q gi|254780161|r 287 PWYMLSSSIKK 297 (299) Q Consensus 287 ~~~l~r~~~~~ 297 (299) .|++|++.+++ T Consensus 161 ~~l~~~a~~~~ 171 (209) T 1ezf_A 161 VTLMMDATNMP 171 (209) T ss_dssp -----CTTSHH T ss_pred HHHHHHCCCHH T ss_conf 99999648789 No 2 >>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:106-239) Probab=99.97 E-value=8.3e-29 Score=213.82 Aligned_cols=134 Identities=12% Similarity=0.174 Sum_probs=129.6 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC Q ss_conf 98999999999985305888899899999864433799999998403430345576688999999899887224787634 Q gi|254780161|r 113 PNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHR 192 (299) Q Consensus 113 ~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~ 192 (299) |+++|.+||+||++|+++.+|+|++||+.||++|+|+||+|++.+++..+.....+++.++|.|+|+||+|||+++|+++ T Consensus 1 P~~~~~~li~~~~~Dl~~~~~~t~~dl~~Y~~~~ag~vg~l~~~~l~~~~~~~~~~~A~~lG~a~ql~niLRdi~~d~~~ 80 (134) T 2zco_A 1 AFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFEN 80 (134) T ss_dssp CHHHHHHHHHHHHHGGGCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 33478899899997751233576899999999863399999888850556301789999987798999999989987504 Q ss_pred CCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 887346789996399977852468998799999999999999999999644528 Q gi|254780161|r 193 GQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYI 246 (299) Q Consensus 193 gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l 246 (299) ||+|||.|+|.+||++.+++.++..++++++++..++++|+.||.+|++.++.+ T Consensus 81 gr~ylP~d~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~L 134 (134) T 2zco_A 81 ERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVF 134 (134) T ss_dssp TCCCSCHHHHHHTTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGS T ss_pred CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 760378799988599999998754335678776689999999898899778758 No 3 >>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} (A:1-131) Probab=99.89 E-value=1.8e-24 Score=184.43 Aligned_cols=126 Identities=7% Similarity=-0.052 Sum_probs=117.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 89999999999999852813879988599888068999999999997760367882-58999999999999977401789 Q gi|254780161|r 15 KIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNP-ITRDMRLQWWKDIFESSTKGLIA 93 (299) Q Consensus 15 ~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~-~~~~~rL~~w~~~l~~~~~~~~~ 93 (299) +.++.++++|.+++|++|++||+++++||++.|++++++|||||++|+|+|+.+.+ ..+..+|+||++.+.+.+. T Consensus 4 ~~~~~~~~~~~~~~~~~s~sfy~a~~~Lp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~~L~~~~~~~~~~~~---- 79 (131) T 1ezf_A 4 NSLSNSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDW---- 79 (131) T ss_dssp ----CHHHHHHHHHHHHCSSHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTC---- T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---- T ss_conf 3389999999999985695499999868999999999999999987633219999868899999999999862421---- Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH Q ss_conf 8689899999999986189989999999999853058888998999998644 Q gi|254780161|r 94 ESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFR 145 (299) Q Consensus 94 ~~~~Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~ 145 (299) ..||+..++++++++++++..+|.++|+|+++|+...+|+|+++|..||++ T Consensus 80 -~~~p~~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~~~~~L~~Y~~r 130 (131) T 1ezf_A 80 -RFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDK 130 (131) T ss_dssp -CCCCCCSTTHHHHHTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTS T ss_pred -HHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf -111368642578861339999998418777778999999998489986445 No 4 >>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:1-105,A:240-293) Probab=99.84 E-value=3.5e-21 Score=162.16 Aligned_cols=102 Identities=9% Similarity=-0.023 Sum_probs=93.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHH Q ss_conf 770689999999999999852813879988599888068999999999997760367882589999---99999999977 Q gi|254780161|r 11 RKEEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMR---LQWWKDIFESS 87 (299) Q Consensus 11 ~~~~~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~r---L~~w~~~l~~~ 87 (299) ..+...+++++.+|.+++|++|++||+|++|+|++.|+++++||||||++|||+|++++|..+.++ |+||++.++++ T Consensus 4 ~~~~~~l~~~~~~C~~iir~~s~sFylAs~lLP~~~R~ai~ALYAFcR~~DDIvD~~~~p~~~~~r~~~L~~Wr~~l~~~ 83 (159) T 2zco_A 4 AAAMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEY 83 (159) T ss_dssp ---CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHCTTSC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 15655269999999999997497799999878999999999999999987743007896577999999988777667764 Q ss_pred HHCCCCCCCCHHHHHHHHHHHHCCCCHH Q ss_conf 4017898689899999999986189989 Q gi|254780161|r 88 TKGLIAESISPFSVELLSIVRQYDLPNQ 115 (299) Q Consensus 88 ~~~~~~~~~~Pv~~aL~~~~~~~~l~~~ 115 (299) +.|. +.|||+.+|.+++++++|.++ T Consensus 84 ~~g~---~~~PV~~AL~~tv~~~~L~~~ 108 (159) T 2zco_A 84 HHFQ---SDRRIMMALQHVAQHKNISIE 108 (159) T ss_dssp CCCS---SCHHHHHHHHHHHTTSCCCTT T ss_pred CCCC---CCCHHHHHHHHHHHHHHHCHH T ss_conf 0368---876888867999998732997 No 5 >>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} (A:125-299) Probab=97.55 E-value=0.0017 Score=42.24 Aligned_cols=136 Identities=14% Similarity=0.054 Sum_probs=95.6 Q ss_pred HHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH--- Q ss_conf 999999999985305888-899899999864433799999998---4034303455766889999998998872247--- Q gi|254780161|r 115 QYFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATM---ILDSERYSASLRVIKYAGIAQFIGQLICQLP--- 187 (299) Q Consensus 115 ~~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~--- 187 (299) +.+..++.|...|+.... ..|++++..-+..-.|++..+++. ++++...+.......++|.++|+.|-+.|+- T Consensus 10 ~~~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~lf~~a~~~ga~lag~~~e~~~~~~~~~G~~fQi~dD~~D~~~~~ 89 (175) T 1v4e_A 10 NVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGME 89 (175) T ss_dssp HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 01110246776677622799999999999874220232033334531123409999999999999999977622567844 Q ss_pred -------HHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf -------876348873467899963999778524689987999------999999999999999996445289999 Q gi|254780161|r 188 -------IHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISL------AIKIFAELGLKYLFKAREEMRYILPDV 250 (299) Q Consensus 188 -------~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~------~~~~~~~~A~~~l~~a~~~~~~lp~~~ 250 (299) .|+..|+..+|.-..-++.-....-.....-..+.. ++......+..+.++|...+..+|... T Consensus 90 ~~~~k~~~Dl~~gk~Tlp~~~al~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~ 165 (175) T 1v4e_A 90 KIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFENRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 165 (175) T ss_dssp SCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHHTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC- T ss_pred HCCCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2089414334179647999999986979999987789999999999838799999999999999887364788878 No 6 >>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} (A:109-281) Probab=96.65 E-value=0.042 Score=32.86 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=81.5 Q ss_pred HHHHHHHHHHHHHCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-- Q ss_conf 9999999999853058--8-88998999998644337999999984---03430345576688999999899887224-- Q gi|254780161|r 115 QYFLDMIEAHFFDSYN--D-SIFDCKQFEHYAFRISSRLIHLATMI---LDSERYSASLRVIKYAGIAQFIGQLICQL-- 186 (299) Q Consensus 115 ~~l~~lid~~~~Dl~~--~-~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~~~~~~~~a~~lG~A~ql~niLRdi-- 186 (299) ..+.++..|...|+.. + .-.|++++..-+..-.|++..+++.+ ++ ...+.......++|.|+|+.|=+.|+ T Consensus 10 ~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~~~~KTg~lf~~~~~~~a~la-~~~~~l~~~g~~lG~afQi~DD~~d~~~ 88 (173) T 2q80_A 10 RQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFS-DYKEDLKPLLNTLGLFFQIRDDYANLHS 88 (173) T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCSCCHHHHHHHHHHHHHHHHHHHHHC T ss_pred HCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 101111010035665402345576999999998603102320003544212-2003789999988999998766442004 Q ss_pred ---------HHHHHCCCCCCCHHHHHHCCCCH-HHH---HCCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHH Q ss_conf ---------78763488734678999639997-785---24689987999----------99999999999999999644 Q gi|254780161|r 187 ---------PIHYHRGQLYFPLDILGAVGLDR-ESF---LSGQNSDRISL----------AIKIFAELGLKYLFKAREEM 243 (299) Q Consensus 187 ---------~~d~~~gr~yLP~~~l~~~gv~~-e~l---~~~~~~~~~~~----------~~~~~~~~A~~~l~~a~~~~ 243 (299) +.|+..|+..+|.-..-+..-.. +.+ ..+..++.-.. ++......++.+...|...+ T Consensus 89 ~~~~~gK~~g~Dl~~gk~T~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~L 168 (173) T 2q80_A 89 KEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQI 168 (173) T ss_dssp C------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 40003555332020488769999999845247999999865569999999999999985989999999999999999999 Q ss_pred HHC Q ss_conf 528 Q gi|254780161|r 244 RYI 246 (299) Q Consensus 244 ~~l 246 (299) ..+ T Consensus 169 ~~l 171 (173) T 2q80_A 169 DAR 171 (173) T ss_dssp HHT T ss_pred HHC T ss_conf 819 No 7 >>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} (A:) Probab=96.37 E-value=0.075 Score=31.17 Aligned_cols=121 Identities=12% Similarity=-0.007 Sum_probs=77.8 Q ss_pred HHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHC---CC---CCHHHHHHHHHHHHHHHHHHHHHH--- Q ss_conf 99999999998530588-889989999986443379999999840---34---303455766889999998998872--- Q gi|254780161|r 115 QYFLDMIEAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMIL---DS---ERYSASLRVIKYAGIAQFIGQLIC--- 184 (299) Q Consensus 115 ~~l~~lid~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i~---~~---~~~~~~~~~a~~lG~A~ql~niLR--- 184 (299) ..+..++.|...|+... ...|++++..-++.-.|++..+++.+- ++ .........+.++|.++|+.+=+. T Consensus 134 ~~~~~~~~GQ~~d~~~~~~~~s~~~y~~~~~~KT~~l~~~~~~~ga~~~g~~~~~~~~l~~~g~~lG~afQi~DD~~d~~ 213 (295) T 3ipi_A 134 KAGXDXAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFL 213 (295) T ss_dssp HHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99986224778876332011219999999987544167889988577873013678999999998999999877764014 Q ss_pred --CCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf --24787634887346789996399977852468998799999999999999999999644528 Q gi|254780161|r 185 --QLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYI 246 (299) Q Consensus 185 --di~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l 246 (299) +...|+..|+.-+|.-..-+. .++.....+............+..+.++.. T Consensus 214 g~~~~~Dl~~gk~Tlp~~~a~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (295) T 3ipi_A 214 EVVEGKESKFTSETLPHIYXKST-----------SKEEALKKSIDCVKLHVAAAKETLETFREC 266 (295) T ss_dssp HHHHC-------CCHHHHHTTTS-----------CHHHHHHHHHHHHHHHHHHHHHHHTTSCCS T ss_pred CCCCHHHHHCCCCCHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 77300003237434899998861-----------879999999999999999999998637698 No 8 >>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} (A:) Probab=95.98 E-value=0.12 Score=29.85 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=91.3 Q ss_pred HHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHC---CCC---CHHHHHHHHHHHHHHHHHHHHHHC- Q ss_conf 8999999999985305888-89989999986443379999999840---343---034557668899999989988722- Q gi|254780161|r 114 NQYFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATMIL---DSE---RYSASLRVIKYAGIAQFIGQLICQ- 185 (299) Q Consensus 114 ~~~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~i~---~~~---~~~~~~~~a~~lG~A~ql~niLRd- 185 (299) .+....++.|..+|+.... -.+.+++..-++.-.|++..+++.+. ++. ..........++|.|+|+.|=+.| T Consensus 166 ~~~~~~~~~Gq~~dl~~~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 245 (360) T 3lmd_A 166 AETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDI 245 (360) T ss_dssp HHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999846678874999999999999999999999999984989999999999999999999888888750 Q ss_pred ----------CHHHHHCCCCCCCHHHHHHCCCCH-HHHH----CCCCCH-HHHHH---------HHHHHHHHHHHHHHHH Q ss_conf ----------478763488734678999639997-7852----468998-79999---------9999999999999999 Q gi|254780161|r 186 ----------LPIHYHRGQLYFPLDILGAVGLDR-ESFL----SGQNSD-RISLA---------IKIFAELGLKYLFKAR 240 (299) Q Consensus 186 ----------i~~d~~~gr~yLP~~~l~~~gv~~-e~l~----~~~~~~-~~~~~---------~~~~~~~A~~~l~~a~ 240 (299) .+.|+..|+.-+|.-..-+..-.. .++. ....++ .+..+ +......++.+.++|. T Consensus 246 ~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~ 325 (360) T 3lmd_A 246 FSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIAN 325 (360) T ss_dssp HC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHCCCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 28877749972047767984099999998598768999999818789999999999999986979999999999999999 Q ss_pred HHHHHCCHHHH Q ss_conf 64452899999 Q gi|254780161|r 241 EEMRYILPDVF 251 (299) Q Consensus 241 ~~~~~lp~~~r 251 (299) ..+..+|.... T Consensus 326 ~~l~~l~~~~~ 336 (360) T 3lmd_A 326 AELDRLPDSTV 336 (360) T ss_dssp HHHTTSCCSHH T ss_pred HHHHCCCCCHH T ss_conf 99866999689 No 9 >>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:1-105,A:240-293) Probab=95.46 E-value=0.18 Score=28.54 Aligned_cols=141 Identities=12% Similarity=0.053 Sum_probs=77.9 Q ss_pred CCCCHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHH----HHHH Q ss_conf 8899899999864433---79999999840343034557668899999989988722478763488734678----9996 Q gi|254780161|r 132 SIFDCKQFEHYAFRIS---SRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLD----ILGA 204 (299) Q Consensus 132 ~~~t~~~L~~Y~~~~a---g~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~----~l~~ 204 (299) ...+.++=..||..+. +.-+.++...+..+...+. ..-+.....+-|+... ..-..+.+ .|.. T Consensus 6 ~~~~l~~~~~~C~~iir~~s~sFylAs~lLP~~~R~ai-------~ALYAFcR~~DDIvD~---~~~p~~~~~r~~~L~~ 75 (159) T 2zco_A 6 AMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAV-------WAIYAVCRKIDDSIDV---YGDIQFLNQIKEDIQS 75 (159) T ss_dssp -CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHH-------HHHHHHHHHHHHGGGT---TSSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH-------HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH T ss_conf 65526999999999999749779999987899999999-------9999999987743007---8965779999999887 Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCH Q ss_conf 39997785246899879999999999999999999964452899999999-99999999999999688872458986896 Q gi|254780161|r 205 VGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAF-IPVSITESVLKHAQNHGFKIVSHSHTPNQ 283 (299) Q Consensus 205 ~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~-l~~~~~~~~L~~l~~~~~~v~~~~~~~~~ 283 (299) ..-..+.+.+|...+.+-.++.+.+. ...+.+.++|++ |++++|..+|.++++.+|- ++.++.+++ T Consensus 76 Wr~~l~~~~~g~~~~PV~~AL~~tv~------------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (159) T 2zco_A 76 IEKYPYEYHHFQSDRRIMMALQHVAQ------------HKNISIEAQPIIELAARIYIEILDEVRQANYT-LHERVFVEK 142 (159) T ss_dssp HHHCTTSCCCCSSCHHHHHHHHHHHT------------TSCCCTTHHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHH------------HHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCH T ss_conf 77667764036887688886799999------------87329977899999999999999999958998-878983289 Q ss_pred HHHHHHHHHHHHH Q ss_conf 6799999999862 Q gi|254780161|r 284 LVRPWYMLSSSIK 296 (299) Q Consensus 284 ~~~~~~l~r~~~~ 296 (299) +.|. .+++...+ T Consensus 143 ~~~~-~~~~~~~~ 154 (159) T 2zco_A 143 RKKA-KLFHEINS 154 (159) T ss_dssp HHHH-HHHHHHHT T ss_pred HHHH-HHHHHHHH T ss_conf 9999-99999999 No 10 >>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A (A:133-289) Probab=94.43 E-value=0.16 Score=28.92 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=51.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCC--CCHHHHHHHHHHHHHHHHHHHHHHCCH-- Q ss_conf 9999999999853058888998999998644337999999984---034--303455766889999998998872247-- Q gi|254780161|r 115 QYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMI---LDS--ERYSASLRVIKYAGIAQFIGQLICQLP-- 187 (299) Q Consensus 115 ~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~--~~~~~~~~~a~~lG~A~ql~niLRdi~-- 187 (299) +.+..++.|...|+ .|++++..-+..-.|+++.+++.+ ++. ...........++|.++|+.+=+.|+- T Consensus 10 ~~~~~~~~GQ~~Dl-----~s~~~y~~i~~~KTg~Lf~~a~~~ga~~a~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~d 84 (157) T 2azj_A 10 ELWKDTSVGALRDM-----YDNSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK 84 (157) T ss_dssp HHHHHHHHHHHHTT-----TTTSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCC T ss_conf 66467899999986-----6499999999987533777543100011221002578999986332899979986373477 Q ss_pred -------------HHHHCCCCCCCH Q ss_conf -------------876348873467 Q gi|254780161|r 188 -------------IHYHRGQLYFPL 199 (299) Q Consensus 188 -------------~d~~~gr~yLP~ 199 (299) .|+..|+..+|. T Consensus 85 ~~~~gk~~gk~~~~Dl~~gk~T~~~ 109 (157) T 2azj_A 85 KVEEIDGSAKQLFKYYREGKLEEYV 109 (157) T ss_dssp CTTTCCTTGGGGHHHHTTTCHHHHH T ss_pred HHHHCCCCCCHHCCHHHCCCHHHHH T ss_conf 1220122250103407528889999 No 11 >>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A* (A:) Probab=94.35 E-value=0.36 Score=26.59 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=88.7 Q ss_pred HHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCC------CCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999853058----88899899999864433799999998---4034------303455766889999998998 Q gi|254780161|r 115 QYFLDMIEAHFFDSYN----DSIFDCKQFEHYAFRISSRLIHLATM---ILDS------ERYSASLRVIKYAGIAQFIGQ 181 (299) Q Consensus 115 ~~l~~lid~~~~Dl~~----~~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~------~~~~~~~~~a~~lG~A~ql~n 181 (299) +.......|.-.|+.. ....+++++..-+....|++..+++. ++++ ...........++|.++|+.+ T Consensus 175 ~~~~~~~~Gq~~d~~~~~~~~~~~t~~~y~~~~~~KT~~l~~~~~~~~~~la~~~~~~~~~~~~l~~~g~~lG~afQi~D 254 (368) T 2her_A 175 ESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHN 254 (368) T ss_dssp HHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 75555589999988877502132319988887887543368889999899874110122578999999982606899788 Q ss_pred HHHCC------HHHHHCCCCCCCHHHHHHCCCCHHH--HH---CCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHH Q ss_conf 87224------7876348873467899963999778--52---46899879999------99999999999999996445 Q gi|254780161|r 182 LICQL------PIHYHRGQLYFPLDILGAVGLDRES--FL---SGQNSDRISLA------IKIFAELGLKYLFKAREEMR 244 (299) Q Consensus 182 iLRdi------~~d~~~gr~yLP~~~l~~~gv~~e~--l~---~~~~~~~~~~~------~~~~~~~A~~~l~~a~~~~~ 244 (299) =+.|+ +.|+..|++-+|.-..-+. .+++. +. .+...+.++++ +......++.+.+++.+.+. T Consensus 255 D~~d~~~~~~~~~Dl~~gk~T~p~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 333 (368) T 2her_A 255 DVSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVK 333 (368) T ss_dssp HHHHHHSCCSSSCTTTTTCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCCCCHHHCCCCHHHHHHHHHH-CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998665156345666549817999999995-9999999999986787789999999981688999999999999999998 Q ss_pred HCCHHH-HHHH Q ss_conf 289999-9999 Q gi|254780161|r 245 YILPDV-FPAF 254 (299) Q Consensus 245 ~lp~~~-r~~~ 254 (299) .+|... +..+ T Consensus 334 ~l~~~~~~~~L 344 (368) T 2her_A 334 DITDDSLQKVF 344 (368) T ss_dssp TCSCHHHHHHH T ss_pred HCCCCHHHHHH T ss_conf 66530178999 No 12 >>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis; 2.50A {Penicillium roqueforti} (A:) Probab=94.00 E-value=0.42 Score=26.12 Aligned_cols=201 Identities=8% Similarity=-0.052 Sum_probs=119.3 Q ss_pred HHHHHCCHHHHH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC- Q ss_conf 998859988806---8999999999997760367882589999999999999774017898689899999999986189- Q gi|254780161|r 37 LACLLSPPLYRI---SLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDL- 112 (299) Q Consensus 37 ~a~~~lP~~~R~---~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~l- 112 (299) +++.+.|.--.+ .+.-+.++.-..||..|........ +...+.+.....+.......|+..++.++..+..- T Consensus 49 ~~~~~~P~a~~erl~~~a~~~~~~f~~DD~~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 124 (300) T 1di1_A 49 VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMSFADGE----AYNNRLIPISRGDVLPDRTKPEEFILYDLWESMRAH 124 (300) T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHTSSCCCTTCHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999878999999999999999999982010158757699----999999987607899887689999999999999987 Q ss_pred ---CHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHC--CCC----CHHHHHHHHHHHHHHHHHH Q ss_conf ---9899999999998530588---889989999986443379999999840--343----0345576688999999899 Q gi|254780161|r 113 ---PNQYFLDMIEAHFFDSYND---SIFDCKQFEHYAFRISSRLIHLATMIL--DSE----RYSASLRVIKYAGIAQFIG 180 (299) Q Consensus 113 ---~~~~l~~lid~~~~Dl~~~---~~~t~~~L~~Y~~~~ag~vg~l~~~i~--~~~----~~~~~~~~a~~lG~A~ql~ 180 (299) -...+.+++.+........ .++|+++...+-..+.|.-..+.+-.+ +.. ..+......+..+....++ T Consensus 125 ~~~~~~~~~~~~~~~~~e~~~~~~~~~pt~~eY~~~R~~~~g~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~ 204 (300) T 1di1_A 125 DAELANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVV 204 (300) T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999998704688999999999988614388999999997478898888899999999999999998 Q ss_pred HHHHCCHHHHHCCC---------CCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 88722478763488---------73467899963999778524689987999999999999999999996445289999 Q gi|254780161|r 181 QLICQLPIHYHRGQ---------LYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDV 250 (299) Q Consensus 181 niLRdi~~d~~~gr---------~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~ 250 (299) |=+-......+.|. .-+-.-.+.++|++.++ ..+.+..++......+.+.......+|+.. T Consensus 205 NDl~S~~KE~~~g~~~~~~~~~~~N~v~~l~~~~g~s~~e---------A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (300) T 1di1_A 205 NDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVHDEIVAEKIASPDGC 274 (300) T ss_dssp HHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHSCTTCC T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 7767789999714445655542100687877742999999---------999999999999999999999874458655 No 13 >>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} (A:) Probab=93.94 E-value=0.43 Score=26.04 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=104.9 Q ss_pred HHHHHCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-- Q ss_conf 9988599---88806899999999999776036788258999999999999977401789868989999999998618-- Q gi|254780161|r 37 LACLLSP---PLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYD-- 111 (299) Q Consensus 37 ~a~~~lP---~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~-- 111 (299) +++.+.| ++.-..+..+.++.-..||+.|+.......... --...+.....+...++.+|+..++.+...+.. T Consensus 53 ~~~~~~P~~~~e~l~~~a~~~~~~~~~DD~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (337) T 1ps1_A 53 LASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTK--QLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEG 130 (337) T ss_dssp HHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHH--HHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHTT T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH--HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999778999999999999999999845242575536999999--99999998734888764559999999999999841 Q ss_pred CCHHHHHH-------HHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHHHH-HHH-CCCC------CHHHHHHHHHH Q ss_conf 99899999-------99999853058----888998999998644337999999-984-0343------03455766889 Q gi|254780161|r 112 LPNQYFLD-------MIEAHFFDSYN----DSIFDCKQFEHYAFRISSRLIHLA-TMI-LDSE------RYSASLRVIKY 172 (299) Q Consensus 112 l~~~~l~~-------lid~~~~Dl~~----~~~~t~~~L~~Y~~~~ag~vg~l~-~~i-~~~~------~~~~~~~~a~~ 172 (299) .+...... ++++....... ..++|+++...+=..+.|+-..+. +.. .+.. ........... T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ps~~eY~~~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~l~~~ 210 (337) T 1ps1_A 131 MTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQI 210 (337) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 59999999999999999999999997534788999999999988702577899999998589889999961145899999 Q ss_pred HHHHHHHHHHHHCCHHHHHCCCCC-CCHHHHHHCCCCHHH Q ss_conf 999998998872247876348873-467899963999778 Q gi|254780161|r 173 AGIAQFIGQLICQLPIHYHRGQLY-FPLDILGAVGLDRES 211 (299) Q Consensus 173 lG~A~ql~niLRdi~~d~~~gr~y-LP~~~l~~~gv~~e~ 211 (299) .+....++|=+-....+...|... +-.-++..+|++.++ T Consensus 211 ~~~~~~l~NDl~S~~KE~~~g~~~N~v~vl~~~~g~s~~~ 250 (337) T 1ps1_A 211 AVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSR 250 (337) T ss_dssp HHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHH T ss_conf 9999999889888999996387511789998638989999 No 14 >>5eau_A 5-EPI-aristolochene synthase; isoprenoid synthase, natural products biosynthesis, isoprenoid cyclase; HET: FFF; 2.15A {Nicotiana tabacum} (A:261-527) Probab=92.57 E-value=0.69 Score=24.65 Aligned_cols=204 Identities=9% Similarity=0.031 Sum_probs=122.0 Q ss_pred HHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCCCHHHHHHHHHHH Q ss_conf 87998859988---806899999999999776036788258999999999999977---401789868989999999998 Q gi|254780161|r 35 RYLACLLSPPL---YRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESS---TKGLIAESISPFSVELLSIVR 108 (299) Q Consensus 35 ~y~a~~~lP~~---~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~---~~~~~~~~~~Pv~~aL~~~~~ 108 (299) |+.++.+.+++ .|..+.-+.++--.+||.-|........+ ...+.+... ..+....+.+|+..++..+.. T Consensus 12 f~~~~~~~~p~~~~~r~~~a~~~~~~f~~DD~~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (267) T 5eau_A 12 FWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE----AYTDAIQRWDINEIDRLPDYMKISYKAILDLYK 87 (267) T ss_dssp HHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHH----HHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHEEHHHHHHCCCCCHHHHH----HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHH T ss_conf 9988634784568999999999842101122415778799999----999999836850332187069999999999999 Q ss_pred HCC------CCH-------HHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHC-CCCCH------H Q ss_conf 618------998-------9999999999853---05888899899999864433799999-99840-34303------4 Q gi|254780161|r 109 QYD------LPN-------QYFLDMIEAHFFD---SYNDSIFDCKQFEHYAFRISSRLIHL-ATMIL-DSERY------S 164 (299) Q Consensus 109 ~~~------l~~-------~~l~~lid~~~~D---l~~~~~~t~~~L~~Y~~~~ag~vg~l-~~~i~-~~~~~------~ 164 (299) +.. -.. ..+...+++..+. ......+|++|....-..+.|.-..+ +.++. |...+ + T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~ps~~eYl~~R~~t~g~~~~~~l~e~~~g~~lp~~~~~~~ 167 (267) T 5eau_A 88 DYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQDFEWLS 167 (267) T ss_dssp HHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHSCTTCCHHHHHHHH T ss_pred HHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHC T ss_conf 99999999568210999999999999999999999855989976776154267431899999999837988699998750 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC-CCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55766889999998998872247876348873-46789996399977852468998799999999999999999999644 Q gi|254780161|r 165 ASLRVIKYAGIAQFIGQLICQLPIHYHRGQLY-FPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEM 243 (299) Q Consensus 165 ~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~y-LP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~ 243 (299) .........+....++|=+-..+...+.|... +..-.+.++|++.++ ..+-+.++++.....+.+..... T Consensus 168 ~~~~l~~~~~~~~~l~NDi~S~~kE~~~g~~~N~V~vl~~~~g~s~~e---------A~~~~~~~i~~~~~~~~~~~~~~ 238 (267) T 5eau_A 168 KNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKE---------AMAKFQNMAETAWKDINEGLLRP 238 (267) T ss_dssp TCCHHHHHHHHHHHHHHHHHSHHHHHTTTCTTSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHTSSS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 347999999999999656367787984798520145454379999999---------99999999999999999998079 Q ss_pred HHCCHHHH Q ss_conf 52899999 Q gi|254780161|r 244 RYILPDVF 251 (299) Q Consensus 244 ~~lp~~~r 251 (299) ..+|+.+. T Consensus 239 ~~~p~~~~ 246 (267) T 5eau_A 239 TPVSTEFL 246 (267) T ss_dssp CSSCGGGT T ss_pred CCCCHHHH T ss_conf 99999999 No 15 >>2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8} (A:131-266) Probab=92.32 E-value=0.74 Score=24.44 Aligned_cols=77 Identities=10% Similarity=0.011 Sum_probs=55.8 Q ss_pred HHHHHHHHHHHHHCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 9999999999853058--8-8899899999864433799999998---40343034557668899999989988722478 Q gi|254780161|r 115 QYFLDMIEAHFFDSYN--D-SIFDCKQFEHYAFRISSRLIHLATM---ILDSERYSASLRVIKYAGIAQFIGQLICQLPI 188 (299) Q Consensus 115 ~~l~~lid~~~~Dl~~--~-~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~ 188 (299) +.+..++.|...|+.. + .-.|.+++..-+..-.|++..+++. ++++.+.+....+..++|.|+|+.+=+.|+-. T Consensus 11 ~~~~~l~~GQ~~Di~~~~~~~~~~~~~y~~i~~~KT~~Lf~~~~~~ga~l~g~~~~~~~~~g~~lG~aFQi~DDilD~~~ 90 (136) T 2ftz_A 11 ETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDDLXDILG 90 (136) T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 87502157888776553013333137888886440677665122022022024788998863112266763134335156 Q ss_pred HHH Q ss_conf 763 Q gi|254780161|r 189 HYH 191 (299) Q Consensus 189 d~~ 191 (299) |.+ T Consensus 91 ~~~ 93 (136) T 2ftz_A 91 SFE 93 (136) T ss_dssp HCC T ss_pred CCC T ss_conf 732 No 16 >>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3} (A:) Probab=91.16 E-value=0.98 Score=23.61 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=83.0 Q ss_pred HHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999985305--8888998999998644337999999984---03430---345576688999999899887224 Q gi|254780161|r 115 QYFLDMIEAHFFDSY--NDSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL 186 (299) Q Consensus 115 ~~l~~lid~~~~Dl~--~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi 186 (299) .....+..|.-.|+. .....+.+++..-++.-.|++..+++.+ +++.+ .........++|.++|+.+=++|+ T Consensus 144 ~~~~~~~~Gq~~dl~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~~~~~~~~~~~~~~~~g~~lG~afQi~DD~~d~ 223 (342) T 1wy0_A 144 KASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDL 223 (342) T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 67645522520333332156787999999999888999999986140001599999999999999999999998887531 Q ss_pred -----------HHHHHCCCCCCCHHHHHHCCCCH-HH-HH---CCCCC----------------HHHHH------HHHHH Q ss_conf -----------78763488734678999639997-78-52---46899----------------87999------99999 Q gi|254780161|r 187 -----------PIHYHRGQLYFPLDILGAVGLDR-ES-FL---SGQNS----------------DRISL------AIKIF 228 (299) Q Consensus 187 -----------~~d~~~gr~yLP~~~l~~~gv~~-e~-l~---~~~~~----------------~~~~~------~~~~~ 228 (299) ..|+..|+..+|.-..-+..-.. .+ +. ..... ..+++ .+... T Consensus 224 ~~~~~~~gK~~~~Dl~~gk~T~p~~~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 303 (342) T 1wy0_A 224 IADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYA 303 (342) T ss_dssp HSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHH T ss_pred CCCHHHHCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH T ss_conf 48877608333456764101589999999711778999999971424206655444420389999999999986989999 Q ss_pred HHHHHHHHHHHHHHHHHCCHHH Q ss_conf 9999999999996445289999 Q gi|254780161|r 229 AELGLKYLFKAREEMRYILPDV 250 (299) Q Consensus 229 ~~~A~~~l~~a~~~~~~lp~~~ 250 (299) ...++.+.++|.+.+..+|... T Consensus 304 ~~~~~~~~~~a~~~l~~l~~~~ 325 (342) T 1wy0_A 304 AEIAKDMIKKANEALRILPKSK 325 (342) T ss_dssp HHHHHHHHHHHHTTGGGSCCCH T ss_pred HHHHHHHHHHHHHHHHCCCCCH T ss_conf 9999999999999986699978 No 17 >>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A (A:) Probab=91.14 E-value=0.43 Score=26.01 Aligned_cols=80 Identities=5% Similarity=0.157 Sum_probs=50.3 Q ss_pred HHHHHHHHCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCCHH- Q ss_conf 99999853058888----998999998644337999999984---03430---34557668899999989988722478- Q gi|254780161|r 120 MIEAHFFDSYNDSI----FDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQLPI- 188 (299) Q Consensus 120 lid~~~~Dl~~~~~----~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi~~- 188 (299) +.++...|+..... .|.+++..-++...|++..+.+.+ +++.. .+.......++|.|+|+.|=+.|+-. T Consensus 162 ~~~gq~~d~~~~~~~~~~~t~~~y~~i~~~KT~~lf~~~~~lga~lag~~~~~~~~~~~~g~~lG~afQi~DD~ld~~~~ 241 (293) T 2j1p_A 162 LVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS 241 (293) T ss_dssp HHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEHHCCHHHHHHHCC T ss_conf 99998653456640345578999999999878999997999746340031999999996760645001000875654168 Q ss_pred ---------HHHCCCCCCCH Q ss_conf ---------76348873467 Q gi|254780161|r 189 ---------HYHRGQLYFPL 199 (299) Q Consensus 189 ---------d~~~gr~yLP~ 199 (299) |+..|++-+|. T Consensus 242 ~~~~gk~~~Di~~gk~T~p~ 261 (293) T 2j1p_A 242 SKLTYPKLXGLEKSREFAEK 261 (293) T ss_dssp -CCCHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHH T ss_conf 61368889538989999999 No 18 >>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... (A:195-340) Probab=90.93 E-value=0.53 Score=25.41 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=61.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-----------HHHHHCCCCCCCHHHHH-HCCCCHHH-----H---HC-C-CCCHHHH Q ss_conf 5576688999999899887224-----------78763488734678999-63999778-----5---24-6-8998799 Q gi|254780161|r 165 ASLRVIKYAGIAQFIGQLICQL-----------PIHYHRGQLYFPLDILG-AVGLDRES-----F---LS-G-QNSDRIS 222 (299) Q Consensus 165 ~~~~~a~~lG~A~ql~niLRdi-----------~~d~~~gr~yLP~~~l~-~~gv~~e~-----l---~~-~-~~~~~~~ 222 (299) .......++|.|+|+.+=+.|+ +.|+..|+.-+|.-..- +..-...+ + .. + ..++.+. T Consensus 4 ~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (146) T 2e8v_A 4 SLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKL 83 (146) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHH T ss_conf 88888752015787501000001446641356553676285539999999964652166999999999745799989999 Q ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHH Q ss_conf 99999----------9999999999999644528999999999999-99999999996 Q gi|254780161|r 223 LAIKI----------FAELGLKYLFKAREEMRYILPDVFPAFIPVS-ITESVLKHAQN 269 (299) Q Consensus 223 ~~~~~----------~~~~A~~~l~~a~~~~~~lp~~~r~~~l~~~-~~~~~L~~l~~ 269 (299) .++.. ....++.+.+.|...+..+|+.....+.-.. .-..++..|-+ T Consensus 84 ~~~~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~~~~~~L~~l~~~~~~r~~~~~~i~~ 141 (146) T 2e8v_A 84 KLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIID 141 (146) T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHTC---------------------------- T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999862599999999999998704473889999887426999999999999999 No 19 >>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} (A:) Probab=90.74 E-value=1.1 Score=23.35 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=62.5 Q ss_pred HHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH----CCCCCH---HHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 999998530588-88998999998644337999999984----034303---4557668899999989988722478763 Q gi|254780161|r 120 MIEAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMI----LDSERY---SASLRVIKYAGIAQFIGQLICQLPIHYH 191 (299) Q Consensus 120 lid~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i----~~~~~~---~~~~~~a~~lG~A~ql~niLRdi~~d~~ 191 (299) +.++...++... .-.|.+++..-+..-.|++..+++.+ .+..+. .....+..++|.|+|+.|=+.|+--+-. T Consensus 154 ~~~~~~~~~~~~~~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~g~~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~ 233 (299) T 1rqj_A 154 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTA 233 (299) T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 99999999980178999999999999987647887887424556532147889999999999999999988765306345 Q ss_pred C-CCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 4-88734678999639997785246899879999999999999999999964452899 Q gi|254780161|r 192 R-GQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILP 248 (299) Q Consensus 192 ~-gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 248 (299) . |+- ..+|+..|..|=-+.-+++.--...+.++.++.......|. T Consensus 234 ~~gK~------------~~~Di~~gk~T~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 279 (299) T 1rqj_A 234 TLGKR------------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299) T ss_dssp HHSSC------------TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HCCCC------------CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 21986------------20187669520999999998799999999999999986112 No 20 >>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 2f94_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* (A:241-374) Probab=90.08 E-value=1.2 Score=22.98 Aligned_cols=93 Identities=8% Similarity=-0.015 Sum_probs=62.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHCCCCCCCHHHHHHCCCCHHHHH----CCCCCHH----HHHH Q ss_conf 3455766889999998998872247----------87634887346789996399977852----4689987----9999 Q gi|254780161|r 163 YSASLRVIKYAGIAQFIGQLICQLP----------IHYHRGQLYFPLDILGAVGLDRESFL----SGQNSDR----ISLA 224 (299) Q Consensus 163 ~~~~~~~a~~lG~A~ql~niLRdi~----------~d~~~gr~yLP~~~l~~~gv~~e~l~----~~~~~~~----~~~~ 224 (299) .........++|.|+|+.+=+.|+- .|+..|+.-+|.-..-.++-..+... .+..++. +.++ T Consensus 6 ~~~l~~~g~~lGiafQI~DD~lD~~~~~~~gK~~g~Dl~~gk~T~pii~al~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (134) T 2qis_A 6 HANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKAL 85 (134) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99999899999999998643113004602220124647269007999999993999999999998679998999999999 Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHH Q ss_conf ------99999999999999996445289999-99999 Q gi|254780161|r 225 ------IKIFAELGLKYLFKAREEMRYILPDV-FPAFI 255 (299) Q Consensus 225 ------~~~~~~~A~~~l~~a~~~~~~lp~~~-r~~~l 255 (299) +......+..+..+|...+..+|... +.++. T Consensus 86 i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~L~ 123 (134) T 2qis_A 86 YEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFL 123 (134) T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 99879899999999999999999998089936899999 No 21 >>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} (A:) Probab=89.84 E-value=1.3 Score=22.86 Aligned_cols=106 Identities=9% Similarity=-0.050 Sum_probs=61.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH---CCC---CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC-CCCCCCHHHHHH Q ss_conf 88998999998644337999999984---034---30345576688999999899887224787634-887346789996 Q gi|254780161|r 132 SIFDCKQFEHYAFRISSRLIHLATMI---LDS---ERYSASLRVIKYAGIAQFIGQLICQLPIHYHR-GQLYFPLDILGA 204 (299) Q Consensus 132 ~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~---~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~-gr~yLP~~~l~~ 204 (299) .-.|++++..-++.-.|++..+++.+ +++ ...........++|.|+|+.|=+.|+-.|-.. |+- T Consensus 207 ~~~t~~~y~~i~~~KT~~l~~~~~~lga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~--------- 277 (335) T 2h8o_A 207 KAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKA--------- 277 (335) T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------ T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC--------- T ss_conf 01358899987524610055667888776531114678999999998888999999873124899897975--------- Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 399977852468998799999999999999999999644528999 Q gi|254780161|r 205 VGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299) Q Consensus 205 ~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299) .-+|+..+..|--+--.++..-+..+.++..+.......|.. T Consensus 278 ---~~~Dl~~gk~T~p~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (335) T 2h8o_A 278 ---TGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGEK 319 (335) T ss_dssp -----------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGGG T ss_pred ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf ---627987697549999999999999999999999987756846 No 22 >>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3cc9_A* 3ez3_A* (A:173-376) Probab=89.49 E-value=1.3 Score=22.68 Aligned_cols=86 Identities=7% Similarity=-0.003 Sum_probs=55.9 Q ss_pred HHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHC----CCC-----CHHHHHHHHHHHHHHHHHHHHHHCCH-- Q ss_conf 9999853058--8889989999986443379999999840----343-----03455766889999998998872247-- Q gi|254780161|r 121 IEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATMIL----DSE-----RYSASLRVIKYAGIAQFIGQLICQLP-- 187 (299) Q Consensus 121 id~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~i~----~~~-----~~~~~~~~a~~lG~A~ql~niLRdi~-- 187 (299) ..|...|+.. ..-.|++++..-+..-.|++..+++.+. +.. ..........++|.|+|+.|=+.|+- T Consensus 43 ~~Gq~~d~~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~~a~l~g~~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 122 (204) T 2ihi_A 43 NNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGD 122 (204) T ss_dssp TCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC- T ss_pred CCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 11210011012324389999999999744899999999999987125410789999999999988999985403553157 Q ss_pred --------HHHHCCCCCCCHHHHHHCC Q ss_conf --------8763488734678999639 Q gi|254780161|r 188 --------IHYHRGQLYFPLDILGAVG 206 (299) Q Consensus 188 --------~d~~~gr~yLP~~~l~~~g 206 (299) .|+..|+..+|.-..-+.. T Consensus 123 ~~~~~k~~~Dl~~gk~Tlp~~~al~~~ 149 (204) T 2ihi_A 123 STKTGKVGSDIQNNKLTWPLIKTFELC 149 (204) T ss_dssp --------CTTTTTCCCHHHHHHHHHC T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHC T ss_conf 310012448503796269999999959 No 23 >>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} (A:) Probab=86.20 E-value=2.1 Score=21.36 Aligned_cols=106 Identities=11% Similarity=-0.068 Sum_probs=65.4 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCC---CHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-CCCCCCCHHHH Q ss_conf 8888998999998644337999999984---0343---034557668899999989988722478763-48873467899 Q gi|254780161|r 130 NDSIFDCKQFEHYAFRISSRLIHLATMI---LDSE---RYSASLRVIKYAGIAQFIGQLICQLPIHYH-RGQLYFPLDIL 202 (299) Q Consensus 130 ~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~---~~~~~~~~a~~lG~A~ql~niLRdi~~d~~-~gr~yLP~~~l 202 (299) .....+++++..-+..-.|++..+++.+ +++. ..........++|.++|+.|=+.|+-.+-. .|+- T Consensus 161 ~~~~~~~~~y~~~~~~KT~~l~~~~~~~ga~l~g~~~~~~~~l~~~g~~lG~a~Qi~dD~~d~~~~~~~~gK~------- 233 (301) T 1rtr_A 161 EGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKK------- 233 (301) T ss_dssp TTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------- T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC------- T ss_conf 2678999999999976231143146776420023016766899999998999998887866532777762998------- Q ss_pred HHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 963999778524689987999999999999999999996445289 Q gi|254780161|r 203 GAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYIL 247 (299) Q Consensus 203 ~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp 247 (299) ..+|+..+..|--+--+++..-...+.++..+.......+ T Consensus 234 -----~~~Di~~gk~T~p~~~al~~~~~~~~~~l~~~~~~~~~~~ 273 (301) T 1rtr_A 234 -----VGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301) T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC T ss_pred -----HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf -----0007666983199999999999999999999999998786 No 24 >>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} (A:234-367) Probab=85.09 E-value=2.4 Score=21.01 Aligned_cols=92 Identities=7% Similarity=-0.090 Sum_probs=56.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHCCCCCCCHHHHHHCCCCHHHH----HCCCCCHH----HHH- Q ss_conf 345576688999999899887224----------78763488734678999639997785----24689987----999- Q gi|254780161|r 163 YSASLRVIKYAGIAQFIGQLICQL----------PIHYHRGQLYFPLDILGAVGLDRESF----LSGQNSDR----ISL- 223 (299) Q Consensus 163 ~~~~~~~a~~lG~A~ql~niLRdi----------~~d~~~gr~yLP~~~l~~~gv~~e~l----~~~~~~~~----~~~- 223 (299) .........++|.|+|+.|=+.|+ +.|+..|+.-+|.-..-+..-+.... ..+..++. +.+ T Consensus 6 ~~~l~~~g~~lGiafQi~DD~ld~~~~~~~gK~~g~Dl~~gk~Tlpii~al~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (134) T 1uby_A 6 HENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKEL 85 (134) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHH T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 64456677525118998515655314501020123444058775999999993999999999998679999999999999 Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHH Q ss_conf -----999999999999999996445289999-9999 Q gi|254780161|r 224 -----AIKIFAELGLKYLFKAREEMRYILPDV-FPAF 254 (299) Q Consensus 224 -----~~~~~~~~A~~~l~~a~~~~~~lp~~~-r~~~ 254 (299) .+......++.|...|...+..+|... ++.+ T Consensus 86 i~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~L 122 (134) T 1uby_A 86 YEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIF 122 (134) T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHH T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 9987869999999999999999997627983899999 No 25 >>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8} (A:193-307) Probab=79.82 E-value=3.7 Score=19.70 Aligned_cols=42 Identities=17% Similarity=-0.130 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHCCCCCCCHHHHHH Q ss_conf 345576688999999899887224----------787634887346789996 Q gi|254780161|r 163 YSASLRVIKYAGIAQFIGQLICQL----------PIHYHRGQLYFPLDILGA 204 (299) Q Consensus 163 ~~~~~~~a~~lG~A~ql~niLRdi----------~~d~~~gr~yLP~~~l~~ 204 (299) ++.......++|.|+|+.+=+.|+ +.|+..|+..+|.-..-. T Consensus 2 ~e~l~~~g~~lG~afQi~DD~lD~~~~~~~gK~~g~Dl~~gK~T~pii~al~ 53 (115) T 1wmw_A 2 PAAYEEGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLE 53 (115) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 0479998887899999988777641113320122002136776199999999 No 26 >>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* (A:257-390) Probab=78.92 E-value=3.9 Score=19.51 Aligned_cols=87 Identities=5% Similarity=-0.089 Sum_probs=58.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHCCCCCCCHHHHHHCCCCHHHH--H--CCCCCH----HHHH- Q ss_conf 3455766889999998998872247----------8763488734678999639997785--2--468998----7999- Q gi|254780161|r 163 YSASLRVIKYAGIAQFIGQLICQLP----------IHYHRGQLYFPLDILGAVGLDRESF--L--SGQNSD----RISL- 223 (299) Q Consensus 163 ~~~~~~~a~~lG~A~ql~niLRdi~----------~d~~~gr~yLP~~~l~~~gv~~e~l--~--~~~~~~----~~~~- 223 (299) .........++|.++|+.+=+.|+- .|+..|+..+|.-..-..+-..... . .+..++ .+.+ T Consensus 4 ~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~~k~g~Dl~~gk~T~Pii~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (134) T 3dyh_A 4 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRL 83 (134) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 76689999999999999886223315888849978856368305999999985999999999998679998999999999 Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf -----99999999999999999644528999 Q gi|254780161|r 224 -----AIKIFAELGLKYLFKAREEMRYILPD 249 (299) Q Consensus 224 -----~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299) .+......++.+..+|...+..+|.. T Consensus 84 i~~~~~~~~~~~~~~~~~~~a~~~L~~lp~~ 114 (134) T 3dyh_A 84 YEEADLQGDYVAYEAAVAEQVKELIEKLRLC 114 (134) T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9986978999999999999999999847567 No 27 >>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl allyl pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* (A:229-362) Probab=67.95 E-value=7.1 Score=17.76 Aligned_cols=86 Identities=7% Similarity=-0.058 Sum_probs=56.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHCCCCCCCHHHHHHCCCCHHHH----HCCCCCH----HHHH- Q ss_conf 345576688999999899887224----------78763488734678999639997785----2468998----7999- Q gi|254780161|r 163 YSASLRVIKYAGIAQFIGQLICQL----------PIHYHRGQLYFPLDILGAVGLDRESF----LSGQNSD----RISL- 223 (299) Q Consensus 163 ~~~~~~~a~~lG~A~ql~niLRdi----------~~d~~~gr~yLP~~~l~~~gv~~e~l----~~~~~~~----~~~~- 223 (299) ......+..++|.|+|+.|=+.|+ +.|+..|+.-+|.-..-...-+.... ..+..++ .+.+ T Consensus 4 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~~k~g~Dl~~gk~T~pi~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (134) T 1yhl_A 4 MNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRL 83 (134) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 87677689999899998565134525888869874577379106999999980999999999998689998999999999 Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf -----9999999999999999964452899 Q gi|254780161|r 224 -----AIKIFAELGLKYLFKAREEMRYILP 248 (299) Q Consensus 224 -----~~~~~~~~A~~~l~~a~~~~~~lp~ 248 (299) ++......++.+..+|...+..+|. T Consensus 84 l~~~~~~~~~~~~~~~~~~~a~~~l~~l~~ 113 (134) T 1yhl_A 84 YSEANLQADFAAYEAEVVREVESLIEQLKV 113 (134) T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 998698999999999999999999986779 No 28 >>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* (A:) Probab=63.99 E-value=8.5 Score=17.26 Aligned_cols=172 Identities=8% Similarity=-0.016 Sum_probs=101.0 Q ss_pred HHHHHHCCHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC- Q ss_conf 799885998880---6899999999999776036788258999999999999977401789868989999999998618- Q gi|254780161|r 36 YLACLLSPPLYR---ISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYD- 111 (299) Q Consensus 36 y~a~~~lP~~~R---~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~- 111 (299) .+++.+.|.--. ..+.-+.++.-..||..|+.... .......+.+.............+.-..+........ T Consensus 62 ~~~a~~~P~a~~e~l~~~a~~~~~~f~~DD~~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (320) T 3bny_A 62 RVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFE----EGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRA 137 (320) T ss_dssp HHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 88999879999999999999999999952543046725----48999999998613788999878899999999999997 Q ss_pred ---CCHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CC----CHHHHHHHHHHHHHHHHH Q ss_conf ---9989999999999853058---88899899999864433799999998403--43----034557668899999989 Q gi|254780161|r 112 ---LPNQYFLDMIEAHFFDSYN---DSIFDCKQFEHYAFRISSRLIHLATMILD--SE----RYSASLRVIKYAGIAQFI 179 (299) Q Consensus 112 ---l~~~~l~~lid~~~~Dl~~---~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~--~~----~~~~~~~~a~~lG~A~ql 179 (299) --...+..++.+....... ..+++++|...+-..+.|.-..+.+-.++ .. ..+.........+....+ T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~~eY~~~R~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l 217 (320) T 3bny_A 138 HDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSV 217 (320) T ss_dssp HHHHHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHH T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 69999999999999999987676437899999999998853528789999999858999977867799999999999999 Q ss_pred HHHHHCCHHHHHCCCC---------CCCHHHHHHCCCCHHH Q ss_conf 9887224787634887---------3467899963999778 Q gi|254780161|r 180 GQLICQLPIHYHRGQL---------YFPLDILGAVGLDRES 211 (299) Q Consensus 180 ~niLRdi~~d~~~gr~---------yLP~~~l~~~gv~~e~ 211 (299) +|=+-+...+.+.|.. -+..-.+..+|++.++ T Consensus 218 ~NDl~S~~KE~~~g~~~~~~~~~~~N~v~~l~~~~g~s~~e 258 (320) T 3bny_A 218 VNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEA 258 (320) T ss_dssp HHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCHHH T ss_conf 87888888888721211246764200221114524999999 No 29 >>3lji_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.39A {Pseudomonas fluorescens} (A:) Probab=60.75 E-value=9.6 Score=16.87 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=54.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH----HHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC-CCCCCCHHHHHH Q ss_conf 89989999986443379999999----840343---0345576688999999899887224787634-887346789996 Q gi|254780161|r 133 IFDCKQFEHYAFRISSRLIHLAT----MILDSE---RYSASLRVIKYAGIAQFIGQLICQLPIHYHR-GQLYFPLDILGA 204 (299) Q Consensus 133 ~~t~~~L~~Y~~~~ag~vg~l~~----~i~~~~---~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~-gr~yLP~~~l~~ 204 (299) -.+++++..-+..-.|++..+++ .++++. ..........++|.++|+.|=+.|+--|... |+- T Consensus 168 ~~~~~~y~~~~~~KTa~l~~~a~~~~a~l~~g~~~~~~~~l~~~g~~lG~afQi~dD~ld~~~d~~~~gK~--------- 238 (304) T 3lji_A 168 KLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKR--------- 238 (304) T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------- T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC--------- T ss_conf 34479999999999899999999999998466324589999999999999999998752023898886987--------- Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 399977852468998799999999999999999999644528999 Q gi|254780161|r 205 VGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299) Q Consensus 205 ~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299) .-+|+..+..|=-+--+++.--+..+..+..+.......|.. T Consensus 239 ---~~~Dl~~gk~T~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304) T 3lji_A 239 ---QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304) T ss_dssp ------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG T ss_pred ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf ---624777698669999999987999999999999976647800 No 30 >>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* (A:384-523) Probab=52.79 E-value=13 Score=16.01 Aligned_cols=111 Identities=7% Similarity=-0.004 Sum_probs=68.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCC--CCHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHHH Q ss_conf 998999998644337999999984034--3034-------5576688999999899887224787634887-34678999 Q gi|254780161|r 134 FDCKQFEHYAFRISSRLIHLATMILDS--ERYS-------ASLRVIKYAGIAQFIGQLICQLPIHYHRGQL-YFPLDILG 203 (299) Q Consensus 134 ~t~~~L~~Y~~~~ag~vg~l~~~i~~~--~~~~-------~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l~ 203 (299) +|++|......-+.|.....+...++. ...+ .........|...-|.|=+........+|.+ -.=.-.|. T Consensus 1 Pt~eEYl~~~~iS~g~~~~~~~~~~~mg~~~t~e~~~~~~~~~~l~~~~~~i~RL~NDi~s~~~E~~rg~~~s~I~cyMk 80 (140) T 2ong_A 1 PSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMS 80 (140) T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHH T ss_pred CCHHHHHCCEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC T ss_conf 98788843504652268999999984787657999974300449999999999981065677868725874037999850 Q ss_pred HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHH Q ss_conf 63999778524689987999999999999999999996-445289999999 Q gi|254780161|r 204 AVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKARE-EMRYILPDVFPA 253 (299) Q Consensus 204 ~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~-~~~~lp~~~r~~ 253 (299) +||+++|+ ....+..+++.+..-+.+..- .-..+|+.+.-. T Consensus 81 e~gvseee---------A~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~ 122 (140) T 2ong_A 81 DYNASEAE---------ARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGC 122 (140) T ss_dssp HTCCCHHH---------HHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHH T ss_pred CCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 69999999---------9999999999999999999824899889999999 No 31 >>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* (B:) Probab=43.60 E-value=18 Score=15.07 Aligned_cols=26 Identities=4% Similarity=-0.152 Sum_probs=18.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88998999998644337999999984 Q gi|254780161|r 132 SIFDCKQFEHYAFRISSRLIHLATMI 157 (299) Q Consensus 132 ~~~t~~~L~~Y~~~~ag~vg~l~~~i 157 (299) .-.+.+.+..-+....|+++.+.+.+ T Consensus 164 ~~~t~~~y~~~~~~KT~~lf~~~~~l 189 (274) T 3kra_B 164 GNTSLDFIEYVCKKKYGEMHACGAAC 189 (274) T ss_dssp TSSCHHHHHHHHHHHTHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99989999999999889999999999 No 32 >>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} (A:390-530) Probab=33.80 E-value=25 Score=14.06 Aligned_cols=110 Identities=10% Similarity=-0.001 Sum_probs=63.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHH-------HHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHH Q ss_conf 99899999864433799999998403430---345576-------688999999899887224787634887-3467899 Q gi|254780161|r 134 FDCKQFEHYAFRISSRLIHLATMILDSER---YSASLR-------VIKYAGIAQFIGQLICQLPIHYHRGQL-YFPLDIL 202 (299) Q Consensus 134 ~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~---~~~~~~-------~a~~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l 202 (299) +|++|...-..-+.|....++...++..+ .....+ ..+..|.-.-|.|=+..-....++|.+ --=.--| T Consensus 1 Pt~eEYl~n~~iS~~~~~l~~~~~~~mg~~i~~~e~~ew~~~~p~l~~~~~~i~RL~nDi~s~~~E~~rg~~as~I~cYM 80 (141) T 1n1b_A 1 PSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYM 80 (141) T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHH T ss_pred CCHHHHHHHCEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 98898865001220289999999985677643599998651127999999999998645014687871797314899986 Q ss_pred HHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 96399977852468998799999999999999999999644528999999 Q gi|254780161|r 203 GAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFP 252 (299) Q Consensus 203 ~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~ 252 (299) .+||+++|+ ...-+..+++.+..-+.+..-....+|..+.- T Consensus 81 ke~gvseEe---------A~~~i~~~ie~~wK~lN~e~l~~~~~p~~~~~ 121 (141) T 1n1b_A 81 KETNASEEE---------AVEHVKFLIREAWKDMNTAIAAGYPFPDGMVA 121 (141) T ss_dssp HHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHH T ss_pred CCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 379989999---------99999999999999999998179999999999 No 33 >>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (C:1-77) Probab=24.41 E-value=36 Score=12.99 Aligned_cols=16 Identities=25% Similarity=0.935 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 9999999999977401 Q gi|254780161|r 75 MRLQWWKDIFESSTKG 90 (299) Q Consensus 75 ~rL~~w~~~l~~~~~~ 90 (299) .-.+||||.+.+..+| T Consensus 61 ~~~~WwrDVirEst~G 76 (77) T 1qle_C 61 VMFGWWADVVNEGETG 76 (77) T ss_dssp HHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCCC T ss_conf 9999999999974177 No 34 >>1z72_A Transcriptional regulator, putative; structural genomics, PSI, protein structure initiative; 1.45A {Streptococcus pneumoniae TIGR4} (A:45-136) Probab=24.35 E-value=36 Score=12.98 Aligned_cols=35 Identities=3% Similarity=-0.050 Sum_probs=29.3 Q ss_pred HHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 89996399977852468998799999999999999 Q gi|254780161|r 200 DILGAVGLDRESFLSGQNSDRISLAIKIFAELGLK 234 (299) Q Consensus 200 ~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~ 234 (299) +.++++|++.+++...+.++....-...+...|.. T Consensus 57 ~~~~~~gi~~~~~~~~~~~p~~~aYt~~ll~~a~~ 91 (92) T 1z72_A 57 KAFKELKVAENDYLEVTLHPVTKAFQDLXYSAVAS 91 (92) T ss_dssp HHHHHTTCCTHHHHSCCCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 99999395988873146523566799999998714 No 35 >>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide oxidoreductase; 2.00A {Vibrio cholerae} (A:63-146) Probab=23.07 E-value=38 Score=12.82 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.5 Q ss_pred HHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 7899963999778524689987999999999999999 Q gi|254780161|r 199 LDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKY 235 (299) Q Consensus 199 ~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~ 235 (299) .+++.++||+.+.+...-.+..+...+......++.+ T Consensus 45 ~~~~~~~Gvd~~~f~~a~~Sf~V~~~v~~a~~l~~~y 81 (84) T 1bed_A 45 RQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDS 81 (84) T ss_dssp HHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH T ss_conf 9999985999999999982857899999999999980 No 36 >>3k1z_A Haloacid dehalogenase-like hydrolase domain- containing protein 3; HDHD3, structural genomics, structural genomics consortium, SGC; 1.55A {Homo sapiens} (A:18-101) Probab=20.88 E-value=42 Score=12.53 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 999999999774017898689899999 Q gi|254780161|r 77 LQWWKDIFESSTKGLIAESISPFSVEL 103 (299) Q Consensus 77 L~~w~~~l~~~~~~~~~~~~~Pv~~aL 103 (299) -+||+..+.+.+.....+ ....+.++ T Consensus 49 ~~WW~~vV~~tF~~~g~~-~~~~~~~~ 74 (84) T 3k1z_A 49 RQWWLDVVLQTFHLAGVQ-DAQAVAPI 74 (84) T ss_dssp HHHHHHHHHHHHHHTTCC-CHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCC-HHHHHHHH T ss_conf 899999999999863898-09999999 No 37 >>1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active center; 1.90A {Escherichia coli} (A:65-148) Probab=20.80 E-value=42 Score=12.52 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=23.6 Q ss_pred HHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 89996399977852468998799999999999999 Q gi|254780161|r 200 DILGAVGLDRESFLSGQNSDRISLAIKIFAELGLK 234 (299) Q Consensus 200 ~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~ 234 (299) +++.++||+.+.+...-.+..+...+......++. T Consensus 46 ~~~~~~Gvd~~kf~~~~nSf~V~~~v~~a~~l~~~ 80 (84) T 1acv_A 46 DVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAAD 80 (84) T ss_dssp HHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHH T ss_conf 98776248999999997388999999999999998 No 38 >>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase; 1.48A {Pseudomonas cellulosa} (A:148-487) Probab=20.38 E-value=43 Score=12.46 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=45.0 Q ss_pred CHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 00004548577068999999999999985281387998859988806899999999999776036788258999999999 Q gi|254780161|r 2 VLKFLTKNTRKEEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWK 81 (299) Q Consensus 2 ~~~~~~~~~~~~~~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~ 81 (299) |+-++|-+++-=...+-....-..+++|-+.---|++..|..+.. +..+ ...+|...+.+ +||+ T Consensus 55 viNNVNa~~~lLt~~~l~~v~~iAd~fRpYGIkv~LS~nFasP~~-------------lGgL--~TaDPLD~~V~-~WW~ 118 (340) T 1gqi_A 55 VINNVNADPRVLSDQFLQKIAALADAFRPYGIKMYLSINFNSPRA-------------FGDV--DTADPLDPRVQ-QWWK 118 (340) T ss_dssp ECSCSSCCGGGGSHHHHHHHHHHHHHHGGGTCEEEEEECTTHHHH-------------TTSC--SCCCTTSHHHH-HHHH T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC-------------CCCC--CCCCCCCHHHH-HHHH T ss_conf 641545551566888899999999986423618999614467767-------------8987--66787887899-9998 Q ss_pred HHHHHHHH Q ss_conf 99997740 Q gi|254780161|r 82 DIFESSTK 89 (299) Q Consensus 82 ~~l~~~~~ 89 (299) +..+++|. T Consensus 119 ~~~~~iY~ 126 (340) T 1gqi_A 119 TRAQKIYS 126 (340) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 76566886 Done!