HHsearch results for GI: 254780161 and protein with PDBid: 1ezf_A
>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2
Probab=100.00 E-value=0 Score=360.79 Aligned_cols=279 Identities=8% Similarity=0.052 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 899999999999998528138799885998880689999999999977603678-825899999999999997740178-
Q gi|254780161|r 15 KIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTAR-NPITRDMRLQWWKDIFESSTKGLI- 92 (299)
Q Consensus 15 ~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~-~~~~~~~rL~~w~~~l~~~~~~~~- 92 (299)
..+++++++|.++++++|+|||+++++||+++|++++++|+|||.+|+|+|+.. ++......|++|++.+.+......
T Consensus 4 ~~l~~s~~~C~~il~~~SrSF~~a~~~Lp~~~R~av~~lYafcR~~DdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~ 83 (340)
T 1ezf_A 4 NSLSNSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME 83 (340)
T ss_dssp ----CHHHHHHHHHHHHCSSHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 55899999999999965957999998789999999999999999845566389998899999999999998572212213
Q ss_pred -CCCCC-------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH-
Q ss_conf -98689-------899999999986189989999999999853058888998999998644337999999984034303-
Q gi|254780161|r 93 -AESIS-------PFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERY- 163 (299)
Q Consensus 93 -~~~~~-------Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~- 163 (299)
....+ ||..++....+.+..+...+.+.+++++.|+..++++|++||+.|||+|||+||+|++.+++..+.
T Consensus 84 ~~~~~~~ll~~~~~v~~~~~~l~~~~~~~i~~~~~~m~~~m~d~~~~~~~t~~dL~~Ycy~VAg~VG~~l~~l~~~~~~~ 163 (340)
T 1ezf_A 84 SKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFE 163 (340)
T ss_dssp CCSTTHHHHHTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 58202888872539999999989873500577998972538987367679889999999875516999999995677765
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----4557668899999989988722478763488734678999639997785246899879999999999999999999
Q gi|254780161|r 164 ----SASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKA 239 (299)
Q Consensus 164 ----~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a 239 (299)
....+.+.++|.|+|+||||||+++|+++||+|||.|+|.+||++++++.+++.+++++.++.+++.+|+.||++|
T Consensus 164 ~~~~~~~~~~a~~lG~alQltNilRD~~eD~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~~~~l~~~A~~~~~~a 243 (340)
T 1ezf_A 164 DPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDV 243 (340)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30068899999999999999989983399995896568889998839999987386467789999999999999999999
Q ss_pred HHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9644528999999999-99999999999996888724589868966799999999
Q gi|254780161|r 240 REEMRYILPDVFPAFI-PVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSS 293 (299)
Q Consensus 240 ~~~~~~lp~~~r~~~l-~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~ 293 (299)
..++..+|.+.+..|. ....+..+.-++.++|+++|++++.++...+..++.++
T Consensus 244 ~~~~~~lp~~~~~~f~~~~~~~~~~tl~~~~~~~~~~~~~vkisr~~~~~l~~~~ 298 (340)
T 1ezf_A 244 ITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDA 298 (340)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCC----------CT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEHHHHHHHHHHH
T ss_conf 9999878921489999999999999999997391530798476699999999982