HHsearch results for GI: 254780161 and protein with PDBid: 1wy0_A
>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3}
Probab=93.53 E-value=0.35 Score=25.57 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 9999999998530588--88998999998644337999999984---03430---345576688999999899887224-
Q gi|254780161|r 116 YFLDMIEAHFFDSYND--SIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~--~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
....+..|...|+... .-.+++++..-++.-.|++..+++.+ +++.+ .........++|.|+|+.+=+.|+
T Consensus 145 ~~~~~~~Gq~~dl~~~~~~~~~~~~y~~ii~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~ 224 (342)
T 1wy0_A 145 ASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88898762656654014689999999999999999999999999999839999999999999999999999855641023
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHHH------HHCCCC-------------CHHHHH---------HHHHH
Q ss_conf ----------7876348873467899963999778------524689-------------987999---------99999
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRES------FLSGQN-------------SDRISL---------AIKIF 228 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e~------l~~~~~-------------~~~~~~---------~~~~~ 228 (299)
+.|+..|+.-+|.-..-+.+ ++.+ +..... ...+.. .++.-
T Consensus 225 ~~~~~~GK~~g~Dl~~gk~Tlp~i~al~~~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ga~~~a 303 (342)
T 1wy0_A 225 ADEKKLGKPVGSDIRKGKKTLIVAHFFENA-DEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYA 303 (342)
T ss_dssp SCHHHHTSCSCHHHHHTCCCHHHHHHHHHC-CHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHC-CHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 887760997564100276309999999859-9999999999873533116654323311589999999999986979999
Q ss_pred HHHHHHHHHHHHHHHHHCCHH-HHHHH
Q ss_conf 999999999999644528999-99999
Q gi|254780161|r 229 AELGLKYLFKAREEMRYILPD-VFPAF 254 (299)
Q Consensus 229 ~~~A~~~l~~a~~~~~~lp~~-~r~~~ 254 (299)
...++.+.++|.+.+..+|.. .+..+
T Consensus 304 ~~~a~~~~~~A~~~L~~lp~~~~k~~L 330 (342)
T 1wy0_A 304 AEIAKDMIKKANEALRILPKSKARMDL 330 (342)
T ss_dssp HHHHHHHHHHHHTTGGGSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999999998669997899999