HHsearch results for GI: 254780161 and protein with PDBid: 2q80_A
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=95.19 E-value=0.16 Score=27.97 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 999999999853058---888998999998644337999999984---03430345576688999999899887224---
Q gi|254780161|r 116 YFLDMIEAHFFDSYN---DSIFDCKQFEHYAFRISSRLIHLATMI---LDSERYSASLRVIKYAGIAQFIGQLICQL--- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~---~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~~~~~~~~a~~lG~A~ql~niLRdi--- 186 (299)
.+..+..|...|+.. ....+++++..-+..-.|++..+++.+ ++. ..+....+..++|.|+|+.+=+.|+
T Consensus 119 ~~~~~~~Gq~ld~~~~~~~~~~s~~~y~~~i~~KTa~Lf~~~~~~ga~~~~-~~e~l~~~g~~lG~afQi~DD~lD~~~~ 197 (301)
T 2q80_A 119 QLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKEDLKPLLNTLGLFFQIRDDYANLHSK 197 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCSCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999987050458776402566769999999987269999999888776423-5689999999999999865887860188
Q ss_pred --------HHHHHCCCCCCCHHHHHHCCCCH---HHHHC-CCCCHH-HHHHHH---------HHHHHHHHHHHHHHHHHH
Q ss_conf --------78763488734678999639997---78524-689987-999999---------999999999999996445
Q gi|254780161|r 187 --------PIHYHRGQLYFPLDILGAVGLDR---ESFLS-GQNSDR-ISLAIK---------IFAELGLKYLFKAREEMR 244 (299)
Q Consensus 187 --------~~d~~~gr~yLP~~~l~~~gv~~---e~l~~-~~~~~~-~~~~~~---------~~~~~A~~~l~~a~~~~~ 244 (299)
+.|+..|+.-+|.=..-+..-.. ..+.. ...++. ...++. ..-..++.+..+|...+.
T Consensus 198 ~~~~GK~~g~Dl~~gk~Tlpvi~al~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~~~~~~~~~~~~A~~~l~ 277 (301)
T 2q80_A 198 EYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQID 277 (301)
T ss_dssp ------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53348871118776983099999988298379999998566799899999999999869599999999999999999997
Q ss_pred HCCHH
Q ss_conf 28999
Q gi|254780161|r 245 YILPD 249 (299)
Q Consensus 245 ~lp~~ 249 (299)
.+|..
T Consensus 278 ~l~~~ 282 (301)
T 2q80_A 278 ARGGN 282 (301)
T ss_dssp HTTCC
T ss_pred HCCCC
T ss_conf 09999