HHsearch results for GI: 254780161 and protein with PDBid: 2zco_A
>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
Probab=100.00 E-value=0 Score=420.12 Aligned_cols=280 Identities=10% Similarity=0.093 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHHHHHHH
Q ss_conf 068999999999999985281387998859988806899999999999776036788258999---99999999997740
Q gi|254780161|r 13 EEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDM---RLQWWKDIFESSTK 89 (299)
Q Consensus 13 ~~~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~---rL~~w~~~l~~~~~ 89 (299)
..+++++|++||.+++|++++|||++++|||+++|++++++|+|||.+|||+|+..++..... ++++|..... .
T Consensus 6 ~~~~~~~~~~~C~~i~r~~~~sF~~a~~~Lp~~~r~~~~alYaf~R~~Ddi~D~~~~~~~~~~~~~~l~~~~~~~~---~ 82 (293)
T 2zco_A 6 AMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPY---E 82 (293)
T ss_dssp -CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHCTT---S
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_conf 7766999999999999863966999998789999999999999999988630078966779999999999998677---6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 17898689899999999986189989999999999853058888998999998644337999999984034303455766
Q gi|254780161|r 90 GLIAESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRV 169 (299)
Q Consensus 90 ~~~~~~~~Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~ 169 (299)
.....+.|||..+|.+++++++++++++.++|+||++|++.++|+|++||+.||++|||+||+|++.+++..+.....+.
T Consensus 83 ~~~~~~~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~l~~~il~~~~~~~~~~~ 162 (293)
T 2zco_A 83 YHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDV 162 (293)
T ss_dssp CCCCSSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHGGGCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 42688887999999999998499856899999999986243568999999999871302199999999615220027999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 88999999899887224787634887346789996399977852468998799999999999999999999644528999
Q gi|254780161|r 170 IKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299)
Q Consensus 170 a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299)
|.++|.|+|+||||||+++|+++||+|||.|+|.+||++++++.++..++++++++.+++++|+.||.+|+.++..+|++
T Consensus 163 A~~lG~AlQltNiLRDi~eD~~~gR~YlP~e~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~lp~~ 242 (293)
T 2zco_A 163 ARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIE 242 (293)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTTCCCSCHHHHHHTTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999999715989977984288999988599999985576205899989999999999999999868758998
Q ss_pred HHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999-9999999999999996888724589868966799999999862
Q gi|254780161|r 250 VFPA-FIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIK 296 (299)
Q Consensus 250 ~r~~-~l~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~~~~ 296 (299)
.+++ .+++.+|..+|++|++++|+ |..|+.+|+++|.|++++...+
T Consensus 243 ~r~~v~~a~~~y~~il~~i~~~~~~-~~~R~~vs~~~K~~l~~~~~~~ 289 (293)
T 2zco_A 243 AQPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEINSK 289 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCEECHHHHHHHHHHHHHH
T ss_conf 7899999999999999999938998-8789851799999999999998