HHsearch results for GI: 254780161 and protein with PDBid: 3lk5_A
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum}
Probab=93.99 E-value=0.3 Score=26.10 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHCCCC--CCCCHHHHHH-HHHHHHHHHHHHH---HHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999998530588--8899899999-8644337999999---9840343---0345576688999999899887224
Q gi|254780161|r 116 YFLDMIEAHFFDSYND--SIFDCKQFEH-YAFRISSRLIHLA---TMILDSE---RYSASLRVIKYAGIAQFIGQLICQL 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~--~~~t~~~L~~-Y~~~~ag~vg~l~---~~i~~~~---~~~~~~~~a~~lG~A~ql~niLRdi 186 (299)
....++.|...|+... .-.+.+.... -.+.+++.+...+ ..++... .......+..++|.|+|+.+=+.|+
T Consensus 183 ~~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiaFQI~DD~lD~ 262 (380)
T 3lk5_A 183 MRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGV 262 (380)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888500568887512431038999999998874699999999887653499999999999999999999998888763
Q ss_pred -----------HHHHHCCCCCCCHHHHHHCC--CCHHH---HH---CCCCCHH-H---HH------HHHHHHHHHHHHHH
Q ss_conf -----------78763488734678999639--99778---52---4689987-9---99------99999999999999
Q gi|254780161|r 187 -----------PIHYHRGQLYFPLDILGAVG--LDRES---FL---SGQNSDR-I---SL------AIKIFAELGLKYLF 237 (299)
Q Consensus 187 -----------~~d~~~gr~yLP~~~l~~~g--v~~e~---l~---~~~~~~~-~---~~------~~~~~~~~A~~~l~ 237 (299)
+.|+..|++-+|.-..-+.. -..+. +. ....++. + .+ .+......++.+.+
T Consensus 263 ~g~~~~~GK~~~~Dl~egK~Tlp~i~ale~a~~~~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~ga~~~~~~~~~~~~~ 342 (380)
T 3lk5_A 263 FGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTE 342 (380)
T ss_dssp HSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 08985469974378757972199999998587513999999997257899999999999999987979999999999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9996445289
Q gi|254780161|r 238 KAREEMRYIL 247 (299)
Q Consensus 238 ~a~~~~~~lp 247 (299)
+|...+..+|
T Consensus 343 ~A~~~L~~l~ 352 (380)
T 3lk5_A 343 SGLAHLDDVD 352 (380)
T ss_dssp HHHHHGGGSC
T ss_pred HHHHHHHCCC
T ss_conf 9999975599