HHsearch results for GI: 254780161 and protein with PDBid: 3oyr_A
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=92.65 E-value=0.47 Score=24.71 Aligned_cols=139 Identities=14% Similarity=0.071 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 999999999853058--88899899999864433799999998---403430---345576688999999899887224-
Q gi|254780161|r 116 YFLDMIEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATM---ILDSER---YSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~---~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
....+..|...+... ....+++++..-++.-.|++...++. +++..+ .........++|.|+||.+=+-|+
T Consensus 159 ~~~~~~~G~~~~~~~~~~~~~~~~~yl~ii~~KTa~L~~~~~~~ga~~~~~~~~~~~~l~~~G~~lG~AFQI~DDllD~~ 238 (345)
T 3oyr_A 159 ASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYG 238 (345)
T ss_dssp HHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999731068877622777668999999999874899999987998837999999999988899999999987654134
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHH-H----HHC-CCC-CH---HHHH------HHHHHHHHHHHHHHHHH
Q ss_conf ----------787634887346789996399977-8----524-689-98---7999------99999999999999999
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRE-S----FLS-GQN-SD---RISL------AIKIFAELGLKYLFKAR 240 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e-~----l~~-~~~-~~---~~~~------~~~~~~~~A~~~l~~a~ 240 (299)
+.|+..|.+-+|.=..-+..-+.+ . +.. ... .+ .+.+ .+......++.|.++|.
T Consensus 239 ~~~~~~GK~~g~Dl~egk~Tlp~i~ale~~~~~~~~~l~~~~~~~~~~~~~~~~i~~lv~~~g~i~~a~~~a~~~~~~A~ 318 (345)
T 3oyr_A 239 GATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAK 318 (345)
T ss_dssp ------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCCCHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 34676277754235249722999999986999999999998737679999999999999986989999999999999999
Q ss_pred HHHHHCCHH-HHHHH
Q ss_conf 644528999-99999
Q gi|254780161|r 241 EEMRYILPD-VFPAF 254 (299)
Q Consensus 241 ~~~~~lp~~-~r~~~ 254 (299)
+.+..+|.. .+..+
T Consensus 319 ~~L~~lp~s~~k~~L 333 (345)
T 3oyr_A 319 AALAMFPANDWREAL 333 (345)
T ss_dssp HTTTTSCSSHHHHHH
T ss_pred HHHHCCCCCHHHHHH
T ss_conf 998669998899999