HHSEARCH alignment of GI: 254780161 and SCOP domain: d1ps1a_

Alignment
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]}
Probab=96.40  E-value=0.03  Score=31.25  Aligned_cols=174  Identities=12%  Similarity=0.051  Sum_probs=106.8

Q ss_pred             HHHHHHCCHHHHHHH---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-
Q ss_conf             799885998880689---9999999999776036788258999999999999977401789868989999999998618-
Q gi|254780161|r   36 YLACLLSPPLYRISL---SFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYD-  111 (299)
Q Consensus        36 y~a~~~lP~~~R~~~---~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~-  111 (299)
                      .+++++.|.-..+.+   .-+.++.-..||+.|+......  ..+.-..+.+.....+.......|+..++.+...+.. 
T Consensus        50 ~~~a~~~P~~~~~rl~l~~~~~~~~f~~DD~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  127 (311)
T d1ps1a_          50 DLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENP--EDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCE  127 (311)
T ss_dssp             HHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCH--HHHHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             8898958899999999999999999871555557663489--99999999999860367876567999999999999997


Q ss_pred             -CCHHHHHHH-------HHHHHHHCC----CCCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCC------CHHHHHHHHH
Q ss_conf             -998999999-------999985305----888899899999864433799999998--40343------0345576688
Q gi|254780161|r  112 -LPNQYFLDM-------IEAHFFDSY----NDSIFDCKQFEHYAFRISSRLIHLATM--ILDSE------RYSASLRVIK  171 (299)
Q Consensus       112 -l~~~~l~~l-------id~~~~Dl~----~~~~~t~~~L~~Y~~~~ag~vg~l~~~--i~~~~------~~~~~~~~a~  171 (299)
                       .+..+...+       +++..+...    ...++++++...+-..+.|....+.+-  .+|..      ..+.......
T Consensus       128 ~~~~~~~~r~~~~~~~~~~~~~~e~~~r~~~~~~ps~~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~v~~~~~~~~l~~  207 (311)
T d1ps1a_         128 GMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQ  207 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHH
T ss_conf             63999999999999999999999999852588999999999998840108889999999848988999996011399999


Q ss_pred             HHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHHHHCCCCHHH
Q ss_conf             999999899887224787634887-3467899963999778
Q gi|254780161|r  172 YAGIAQFIGQLICQLPIHYHRGQL-YFPLDILGAVGLDRES  211 (299)
Q Consensus       172 ~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l~~~gv~~e~  211 (299)
                      ..+....++|=+-..+.+...|.. -+-.-.+.++|++.++
T Consensus       208 ~~~~~~~l~NDi~S~~kE~~~g~~~N~V~vlm~~~g~s~~~  248 (311)
T d1ps1a_         208 IAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSR  248 (311)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHH
T ss_conf             99999886526778874240587674999999816999999


SCOP domain information

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Pentalenene synthase
species: Streptomyces sp., UC5319 [TaxId: 1931]