HHSEARCH alignment of GI: 254780161 and SCOP domain: d1rqja_

Alignment
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=92.06  E-value=0.32  Score=24.23  Aligned_cols=82  Identities=13%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH----CCCCC---HHHHHHHHHHHHHHHHHHHHHHCCH--
Q ss_conf             99999998530588-88998999998644337999999984----03430---3455766889999998998872247--
Q gi|254780161|r  118 LDMIEAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMI----LDSER---YSASLRVIKYAGIAQFIGQLICQLP--  187 (299)
Q Consensus       118 ~~lid~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i----~~~~~---~~~~~~~a~~lG~A~ql~niLRdi~--  187 (299)
                      ..++.|...|+... ...+.+++........|++..+++.+    .+...   .+.......++|.|+|+.+=+-|+-  
T Consensus       152 ~~l~~GQ~ldl~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~a~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~~~~  231 (299)
T d1rqja_         152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD  231 (299)
T ss_dssp             TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999822676659999999999876677888875454421103688999999999999999999988764052


Q ss_pred             ---------HHHHCCCCCCCH
Q ss_conf             ---------876348873467
Q gi|254780161|r  188 ---------IHYHRGQLYFPL  199 (299)
Q Consensus       188 ---------~d~~~gr~yLP~  199 (299)
                               .|+..|+.-+|.
T Consensus       232 ~~~~GK~~g~Dl~egK~Tlp~  252 (299)
T d1rqja_         232 TATLGKRQGADQQLGKSTYPA  252 (299)
T ss_dssp             HHHHSSCTTHHHHHTCCCHHH
T ss_pred             HHHCCCCHHHHHHCCCHHHHH
T ss_conf             553098641387779720999


SCOP domain information

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Escherichia coli [TaxId: 562]