HHSEARCH alignment of GI: 254780161 and SCOP domain: d2q80a1

Alignment
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.77  E-value=0.19  Score=25.83  Aligned_cols=133  Identities=11%  Similarity=0.049  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf             999999999853058---888998999998644337999999984---03430345576688999999899887224---
Q gi|254780161|r  116 YFLDMIEAHFFDSYN---DSIFDCKQFEHYAFRISSRLIHLATMI---LDSERYSASLRVIKYAGIAQFIGQLICQL---  186 (299)
Q Consensus       116 ~l~~lid~~~~Dl~~---~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~~~~~~~~a~~lG~A~ql~niLRdi---  186 (299)
                      .+..+..|...|+..   ....+++++..-+..-.|++..+++.+   ++. ..+.......++|.|+|+.+=+.|+   
T Consensus       113 ~~~~~~~gq~~d~~~~~~~~~~s~~~y~~ii~~KT~~Lf~~~~~~ga~~~~-~~~~l~~~g~~lG~afQi~DD~ld~~~~  191 (291)
T d2q80a1         113 QLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKEDLKPLLNTLGLFFQIRDDYANLHSK  191 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCSCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             877767414541000013454879999999985032035765556653011-0002478887789999988776641053


Q ss_pred             --------HHHHHCCCCCCCHHHHHHCCCCH---HHHH-CCCCCHH-HHHH---------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------78763488734678999639997---7852-4689987-9999---------99999999999999996445
Q gi|254780161|r  187 --------PIHYHRGQLYFPLDILGAVGLDR---ESFL-SGQNSDR-ISLA---------IKIFAELGLKYLFKAREEMR  244 (299)
Q Consensus       187 --------~~d~~~gr~yLP~~~l~~~gv~~---e~l~-~~~~~~~-~~~~---------~~~~~~~A~~~l~~a~~~~~  244 (299)
                              +.|+..|+.-+|.-..-+.+-..   ..++ ....++. ...+         +......++.+..+|...+.
T Consensus       192 ~~~~GK~~g~Dl~~gK~Tlpvi~al~~~~~~~~l~~il~~~~~~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~  271 (291)
T d2q80a1         192 EYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQID  271 (291)
T ss_dssp             ------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             01025653220204887699999998452379999998645699999999999999859799999999999999999987


Q ss_pred             HCCHH
Q ss_conf             28999
Q gi|254780161|r  245 YILPD  249 (299)
Q Consensus       245 ~lp~~  249 (299)
                      .+|..
T Consensus       272 ~l~~~  276 (291)
T d2q80a1         272 ARGGN  276 (291)
T ss_dssp             HTTCC
T ss_pred             CCCCC
T ss_conf             49999


SCOP domain information

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Geranylgeranyl pyrophosphate synthetase
species: Human (Homo sapiens) [TaxId: 9606]