RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780161|ref|YP_003064574.1| phytoene synthase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (299 letters)



>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis,
           staphyloxanthin biosynthesis, transferase, head-TO-head
           condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A*
           2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:106-239)
          Length = 134

 Score = 78.9 bits (194), Expect = 7e-16
 Identities = 16/134 (11%), Positives = 47/134 (35%)

Query: 113 PNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKY 172
             Q F ++I+  + D +        +   Y + ++  +  + T IL       +  V + 
Sbjct: 1   AFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARR 60

Query: 173 AGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELG 232
            G +  +  ++  +   +   ++YF    L    +D         ++      + +A + 
Sbjct: 61  LGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIA 120

Query: 233 LKYLFKAREEMRYI 246
            K      ++++  
Sbjct: 121 EKDFRDVMDQIKVF 134


>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid
           synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo
           sapiens} (A:132-340)
          Length = 209

 Score = 69.3 bits (169), Expect = 6e-13
 Identities = 13/171 (7%), Positives = 45/171 (26%), Gaps = 6/171 (3%)

Query: 135 DCKQFEHYAFRISSRLIHLATMIL-----DSERYSASLRVIKYAGIAQFIGQLICQLPIH 189
             ++++ Y   ++  +    + +      +              G+      +I      
Sbjct: 3   SEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLED 62

Query: 190 YHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249
              G+ ++P ++          F   +N D     +       L ++      +  +   
Sbjct: 63  QQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQ 122

Query: 250 -VFPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIKKRF 299
            VF       +       A  +  ++   +    +      M+ ++     
Sbjct: 123 SVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAV 173


>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid
           synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo
           sapiens} (A:1-131)
          Length = 131

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 8/119 (6%), Positives = 25/119 (21%), Gaps = 6/119 (5%)

Query: 28  LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPI-TRDMRLQWWKDIFES 86
           L                  R ++   Y     L  + D     +  +   L  +      
Sbjct: 17  LNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQ 76

Query: 87  STKGLIAESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFR 145
                          +   ++  +   +  F ++ E +     +           +  +
Sbjct: 77  -----PDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDK 130


>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis,
           staphyloxanthin biosynthesis, transferase, head-TO-head
           condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A*
           2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:1-105,A:240-293)
          Length = 159

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 28  LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMR---LQWWKDIF 84
           ++        A  L P   R ++  +Y    ++    D   +    +     +Q  +   
Sbjct: 21  MKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYP 80

Query: 85  ESSTKGLIAESISPFSVELLSIVRQYDL 112
                    +S     + L  + +  ++
Sbjct: 81  YEYHHF---QSDRRIMMALQHVAQHKNI 105


>1uhg_A Ovalbumin, S-ovalbumin; allergen, egg white protein, serpin;
           HET: SEP NAG; 1.90A {Gallus gallus} (A:32-214,A:279-361)
          Length = 266

 Score = 26.7 bits (58), Expect = 3.8
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)

Query: 51  SFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQY 110
                +   L  +         R++   W     ES T G+I   + P SV+  + +   
Sbjct: 89  CVKELYRGGLEPINFQTAADQARELINSWV----ESQTNGIIRNVLQPXSVDSQTAMV-- 142

Query: 111 DLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATM 156
                    ++ A  F    +  F  +  +   FR++ +      M
Sbjct: 143 ---------LVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQM 179


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.328    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,284,262
Number of extensions: 102971
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 12
Length of query: 299
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 211
Effective length of database: 1,981,209
Effective search space: 418035099
Effective search space used: 418035099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)