RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str. psy62] (299 letters) >2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:106-239) Length = 134 Score = 78.9 bits (194), Expect = 7e-16 Identities = 16/134 (11%), Positives = 47/134 (35%) Query: 113 PNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKY 172 Q F ++I+ + D + + Y + ++ + + T IL + V + Sbjct: 1 AFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARR 60 Query: 173 AGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELG 232 G + + ++ + + ++YF L +D ++ + +A + Sbjct: 61 LGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIA 120 Query: 233 LKYLFKAREEMRYI 246 K ++++ Sbjct: 121 EKDFRDVMDQIKVF 134 >1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} (A:132-340) Length = 209 Score = 69.3 bits (169), Expect = 6e-13 Identities = 13/171 (7%), Positives = 45/171 (26%), Gaps = 6/171 (3%) Query: 135 DCKQFEHYAFRISSRLIHLATMIL-----DSERYSASLRVIKYAGIAQFIGQLICQLPIH 189 ++++ Y ++ + + + + G+ +I Sbjct: 3 SEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLED 62 Query: 190 YHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 G+ ++P ++ F +N D + L ++ + + Sbjct: 63 QQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQ 122 Query: 250 -VFPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIKKRF 299 VF + A + ++ + + M+ ++ Sbjct: 123 SVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAV 173 >1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} (A:1-131) Length = 131 Score = 60.4 bits (146), Expect = 3e-10 Identities = 8/119 (6%), Positives = 25/119 (21%), Gaps = 6/119 (5%) Query: 28 LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPI-TRDMRLQWWKDIFES 86 L R ++ Y L + D + + L + Sbjct: 17 LNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQ 76 Query: 87 STKGLIAESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFR 145 + ++ + + F ++ E + + + + Sbjct: 77 -----PDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDK 130 >2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:1-105,A:240-293) Length = 159 Score = 49.5 bits (118), Expect = 5e-07 Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 6/88 (6%) Query: 28 LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMR---LQWWKDIF 84 ++ A L P R ++ +Y ++ D + + +Q + Sbjct: 21 MKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYP 80 Query: 85 ESSTKGLIAESISPFSVELLSIVRQYDL 112 +S + L + + ++ Sbjct: 81 YEYHHF---QSDRRIMMALQHVAQHKNI 105 >1uhg_A Ovalbumin, S-ovalbumin; allergen, egg white protein, serpin; HET: SEP NAG; 1.90A {Gallus gallus} (A:32-214,A:279-361) Length = 266 Score = 26.7 bits (58), Expect = 3.8 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%) Query: 51 SFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQY 110 + L + R++ W ES T G+I + P SV+ + + Sbjct: 89 CVKELYRGGLEPINFQTAADQARELINSWV----ESQTNGIIRNVLQPXSVDSQTAMV-- 142 Query: 111 DLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATM 156 ++ A F + F + + FR++ + M Sbjct: 143 ---------LVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQM 179 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.328 0.141 0.423 Gapped Lambda K H 0.267 0.0677 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,284,262 Number of extensions: 102971 Number of successful extensions: 308 Number of sequences better than 10.0: 1 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 12 Length of query: 299 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 211 Effective length of database: 1,981,209 Effective search space: 418035099 Effective search space used: 418035099 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 54 (24.7 bits)