BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780161|ref|YP_003064574.1| phytoene synthase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (299 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 299

 Score =  613 bits (1581), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MVLKFLTKNTRKEEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTEL 60
           MVLKFLTKNTRKEEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTEL
Sbjct: 1   MVLKFLTKNTRKEEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTEL 60

Query: 61  MRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDLPNQYFLDM 120
           MRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDLPNQYFLDM
Sbjct: 61  MRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDLPNQYFLDM 120

Query: 121 IEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIG 180
           IEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIG
Sbjct: 121 IEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIG 180

Query: 181 QLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAR 240
           QLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAR
Sbjct: 181 QLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAR 240

Query: 241 EEMRYILPDVFPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIKKRF 299
           EEMRYILPDVFPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIKKRF
Sbjct: 241 EEMRYILPDVFPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIKKRF 299


>gi|254781114|ref|YP_003065527.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 263

 Score = 23.5 bits (49), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 60  LMRVRDTARNPITRDMRLQWWKDIFES--STKGLIAESI--SPFSVELLSIVRQYDLPNQ 115
           L+ VR     PI  DM+  WW+    S  +  G + E+I  +  ++E   +VR+      
Sbjct: 165 LLNVRKNIYRPIDMDMK-HWWEHNIPSLVTEPGAVYEAIDTNDSTIEESRLVRKPTFSPL 223

Query: 116 YF 117
           YF
Sbjct: 224 YF 225


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score = 23.5 bits (49), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 173 AGIAQFIGQL-------ICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDR 220
            GI+Q I  L       +C+L I        FP  +LG+V     SF+    S R
Sbjct: 249 GGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKR 303


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.141    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,339
Number of Sequences: 1233
Number of extensions: 7567
Number of successful extensions: 25
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 5
length of query: 299
length of database: 328,796
effective HSP length: 73
effective length of query: 226
effective length of database: 238,787
effective search space: 53965862
effective search space used: 53965862
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 38 (19.2 bits)