Query gi|254780162|ref|YP_003064575.1| hypothetical protein CLIBASIA_00225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 36 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Sun May 22 18:23:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780162.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1lrr_A SEQA protein; protein-D 10.0 37 0.0016 16.2 -0.6 20 17-36 22-41 (131) 2 1j3e_A SEQA protein; protein-D 9.7 39 0.0016 16.1 -0.6 20 17-36 6-25 (115) 3 1nov_D Nodamura virus coat pro 5.2 1.4E+02 0.006 13.5 0.5 16 19-35 12-27 (44) 4 3msh_A Hepatitis B virus X-int 4.2 1.6E+02 0.0069 13.3 0.2 12 24-35 10-21 (99) 5 2z2q_B Coat protein gamma; wil 4.0 2E+02 0.0084 12.9 0.5 11 25-35 17-27 (44) 6 3fov_A UPF0102 protein RPA0323 3.7 1.5E+02 0.0061 13.5 -0.4 12 21-32 123-134 (134) 7 3fmt_A Protein SEQA; protein-D 3.7 1.3E+02 0.0056 13.7 -0.6 18 19-36 55-72 (162) 8 2xcm_E RAR1, cytosolic heat sh 3.4 2.8E+02 0.012 12.3 0.8 19 13-32 47-66 (74) 9 2a26_A Calcyclin-binding prote 3.3 2.1E+02 0.0089 12.8 0.0 15 15-29 32-46 (50) 10 2yrt_A Chord containing protei 3.2 3E+02 0.013 12.1 0.8 19 14-32 48-66 (75) No 1 >1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1 Probab=10.01 E-value=37 Score=16.16 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.0 Q ss_pred HHHHHHHHHHCCCCCCCCCC Q ss_conf 76665444421699854659 Q gi|254780162|r 17 VEKSVLEDEFSNQPGSVGCF 36 (36) Q Consensus 17 veksvledefsnqpgsvgcf 36 (36) +..-.+.|||.+|.+.||-| T Consensus 22 ~~~ll~sdefa~~~~av~RF 41 (131) T 1lrr_A 22 MRELLLSDEYAEQKRAVNRF 41 (131) T ss_dssp HHHHHHSHHHHHCCSHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99998089999987179999 No 2 >1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C Probab=9.67 E-value=39 Score=16.07 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=14.1 Q ss_pred HHHHHHHHHHCCCCCCCCCC Q ss_conf 76665444421699854659 Q gi|254780162|r 17 VEKSVLEDEFSNQPGSVGCF 36 (36) Q Consensus 17 veksvledefsnqpgsvgcf 36 (36) +..-.+.|||.+|.+.|+-| T Consensus 6 ~~~ll~sde~a~q~kaV~RF 25 (115) T 1j3e_A 6 MRELLLSDEYAEQKRAVNRF 25 (115) T ss_dssp HHHHHHSHHHHHCCSHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999389999988389999 No 3 >1nov_D Nodamura virus coat proteins; insect virus, icosahedral virus; 3.50A {Nodamura virus} Probab=5.18 E-value=1.4e+02 Score=13.54 Aligned_cols=16 Identities=50% Similarity=0.547 Sum_probs=10.1 Q ss_pred HHHHHHHHCCCCCCCCC Q ss_conf 66544442169985465 Q gi|254780162|r 19 KSVLEDEFSNQPGSVGC 35 (36) Q Consensus 19 ksvledefsnqpgsvgc 35 (36) ||-|. --||-||.||- T Consensus 12 KsgL~-~aS~vPGPvG~ 27 (44) T 1nov_D 12 KSGLN-FASTIPGPVGV 27 (44) T ss_pred HHHHH-HHHCCCCCCHH T ss_conf 98889-98529985126 No 4 >3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A* Probab=4.24 E-value=1.6e+02 Score=13.29 Aligned_cols=12 Identities=25% Similarity=0.543 Sum_probs=8.4 Q ss_pred HHHCCCCCCCCC Q ss_conf 442169985465 Q gi|254780162|r 24 DEFSNQPGSVGC 35 (36) Q Consensus 24 defsnqpgsvgc 35 (36) |+...+||-||| T Consensus 10 ~d~m~~~~vvGv 21 (99) T 3msh_A 10 EDTMKNPSIVGV 21 (99) T ss_dssp HHHHTSTTEEEE T ss_pred HHHHCCCCCEEE T ss_conf 998547995799 No 5 >2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D Probab=3.99 E-value=2e+02 Score=12.90 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=8.4 Q ss_pred HHCCCCCCCCC Q ss_conf 42169985465 Q gi|254780162|r 25 EFSNQPGSVGC 35 (36) Q Consensus 25 efsnqpgsvgc 35 (36) --|+-||.||- T Consensus 17 aaS~iPGPvG~ 27 (44) T 2z2q_B 17 AASNIPGPIGV 27 (44) T ss_pred HHHCCCCCCHH T ss_conf 98529986215 No 6 >3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009} Probab=3.69 E-value=1.5e+02 Score=13.51 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=8.2 Q ss_pred HHHHHHCCCCCC Q ss_conf 544442169985 Q gi|254780162|r 21 VLEDEFSNQPGS 32 (36) Q Consensus 21 vledefsnqpgs 32 (36) .+++-|.-+||| T Consensus 123 hl~nAF~a~p~~ 134 (134) T 3fov_A 123 HLPGAFDATPGS 134 (134) T ss_dssp EEEEEECCCC-- T ss_pred EEHHHHCCCCCC T ss_conf 812001599999 No 7 >3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli} Probab=3.68 E-value=1.3e+02 Score=13.68 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=12.9 Q ss_pred HHHHHHHHCCCCCCCCCC Q ss_conf 665444421699854659 Q gi|254780162|r 19 KSVLEDEFSNQPGSVGCF 36 (36) Q Consensus 19 ksvledefsnqpgsvgcf 36 (36) .-+..|||..|.+.|+-| T Consensus 55 ~ll~sde~a~~~~aV~RF 72 (162) T 3fmt_A 55 ELLLSDEYAEQKRAVNRF 72 (162) T ss_dssp HHHHSHHHHHCCSHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 987189999887489999 No 8 >2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} Probab=3.40 E-value=2.8e+02 Score=12.27 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=12.1 Q ss_pred HHHHHHHHHHH-HHHCCCCCC Q ss_conf 99987666544-442169985 Q gi|254780162|r 13 FSCIVEKSVLE-DEFSNQPGS 32 (36) Q Consensus 13 fsciveksvle-defsnqpgs 32 (36) +||- .|.+++ |||-+|||- T Consensus 47 WsCC-~kr~~dF~eFl~i~GC 66 (74) T 2xcm_E 47 WKCC-DVHVKEFDEFMEIPPC 66 (74) T ss_dssp ETTT-TEECSSHHHHTTCCCC T ss_pred CCCC-CCCCCCHHHHHCCCCC T ss_conf 1577-8615698997247986 No 9 >2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1 Probab=3.25 E-value=2.1e+02 Score=12.79 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 987666544442169 Q gi|254780162|r 15 CIVEKSVLEDEFSNQ 29 (36) Q Consensus 15 civeksvledefsnq 29 (36) -..||+-+|.|..|+ T Consensus 32 Lt~Ek~kietEIknk 46 (50) T 2a26_A 32 LTAEKSKIETEIKNK 46 (50) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999988999999888 No 10 >2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=3.17 E-value=3e+02 Score=12.10 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHCCCCCC Q ss_conf 9987666544442169985 Q gi|254780162|r 14 SCIVEKSVLEDEFSNQPGS 32 (36) Q Consensus 14 sciveksvledefsnqpgs 32 (36) ||--.++.-=|||-++||- T Consensus 48 sCC~kk~~dF~eFl~i~gC 66 (75) T 2yrt_A 48 SCCKRRTTDFSDFLSIVGC 66 (75) T ss_dssp SSSSCEESSHHHHTTCCCS T ss_pred CCCCCCCCCHHHHHCCCCC T ss_conf 6789765798996047887 Done!