Query         gi|254780162|ref|YP_003064575.1| hypothetical protein CLIBASIA_00225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 36
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Sun May 22 18:23:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780162.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1lrr_A SEQA protein; protein-D  10.0      37  0.0016   16.2  -0.6   20   17-36     22-41  (131)
  2 1j3e_A SEQA protein; protein-D   9.7      39  0.0016   16.1  -0.6   20   17-36      6-25  (115)
  3 1nov_D Nodamura virus coat pro   5.2 1.4E+02   0.006   13.5   0.5   16   19-35     12-27  (44)
  4 3msh_A Hepatitis B virus X-int   4.2 1.6E+02  0.0069   13.3   0.2   12   24-35     10-21  (99)
  5 2z2q_B Coat protein gamma; wil   4.0   2E+02  0.0084   12.9   0.5   11   25-35     17-27  (44)
  6 3fov_A UPF0102 protein RPA0323   3.7 1.5E+02  0.0061   13.5  -0.4   12   21-32    123-134 (134)
  7 3fmt_A Protein SEQA; protein-D   3.7 1.3E+02  0.0056   13.7  -0.6   18   19-36     55-72  (162)
  8 2xcm_E RAR1, cytosolic heat sh   3.4 2.8E+02   0.012   12.3   0.8   19   13-32     47-66  (74)
  9 2a26_A Calcyclin-binding prote   3.3 2.1E+02  0.0089   12.8   0.0   15   15-29     32-46  (50)
 10 2yrt_A Chord containing protei   3.2   3E+02   0.013   12.1   0.8   19   14-32     48-66  (75)

No 1  
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=10.01  E-value=37  Score=16.16  Aligned_cols=20  Identities=30%  Similarity=0.556  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCC
Q ss_conf             76665444421699854659
Q gi|254780162|r   17 VEKSVLEDEFSNQPGSVGCF   36 (36)
Q Consensus        17 veksvledefsnqpgsvgcf   36 (36)
                      +..-.+.|||.+|.+.||-|
T Consensus        22 ~~~ll~sdefa~~~~av~RF   41 (131)
T 1lrr_A           22 MRELLLSDEYAEQKRAVNRF   41 (131)
T ss_dssp             HHHHHHSHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99998089999987179999


No 2  
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=9.67  E-value=39  Score=16.07  Aligned_cols=20  Identities=30%  Similarity=0.556  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHCCCCCCCCCC
Q ss_conf             76665444421699854659
Q gi|254780162|r   17 VEKSVLEDEFSNQPGSVGCF   36 (36)
Q Consensus        17 veksvledefsnqpgsvgcf   36 (36)
                      +..-.+.|||.+|.+.|+-|
T Consensus         6 ~~~ll~sde~a~q~kaV~RF   25 (115)
T 1j3e_A            6 MRELLLSDEYAEQKRAVNRF   25 (115)
T ss_dssp             HHHHHHSHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999389999988389999


No 3  
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral virus; 3.50A {Nodamura virus}
Probab=5.18  E-value=1.4e+02  Score=13.54  Aligned_cols=16  Identities=50%  Similarity=0.547  Sum_probs=10.1

Q ss_pred             HHHHHHHHCCCCCCCCC
Q ss_conf             66544442169985465
Q gi|254780162|r   19 KSVLEDEFSNQPGSVGC   35 (36)
Q Consensus        19 ksvledefsnqpgsvgc   35 (36)
                      ||-|. --||-||.||-
T Consensus        12 KsgL~-~aS~vPGPvG~   27 (44)
T 1nov_D           12 KSGLN-FASTIPGPVGV   27 (44)
T ss_pred             HHHHH-HHHCCCCCCHH
T ss_conf             98889-98529985126


No 4  
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=4.24  E-value=1.6e+02  Score=13.29  Aligned_cols=12  Identities=25%  Similarity=0.543  Sum_probs=8.4

Q ss_pred             HHHCCCCCCCCC
Q ss_conf             442169985465
Q gi|254780162|r   24 DEFSNQPGSVGC   35 (36)
Q Consensus        24 defsnqpgsvgc   35 (36)
                      |+...+||-|||
T Consensus        10 ~d~m~~~~vvGv   21 (99)
T 3msh_A           10 EDTMKNPSIVGV   21 (99)
T ss_dssp             HHHHTSTTEEEE
T ss_pred             HHHHCCCCCEEE
T ss_conf             998547995799


No 5  
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=3.99  E-value=2e+02  Score=12.90  Aligned_cols=11  Identities=45%  Similarity=0.791  Sum_probs=8.4

Q ss_pred             HHCCCCCCCCC
Q ss_conf             42169985465
Q gi|254780162|r   25 EFSNQPGSVGC   35 (36)
Q Consensus        25 efsnqpgsvgc   35 (36)
                      --|+-||.||-
T Consensus        17 aaS~iPGPvG~   27 (44)
T 2z2q_B           17 AASNIPGPIGV   27 (44)
T ss_pred             HHHCCCCCCHH
T ss_conf             98529986215


No 6  
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009}
Probab=3.69  E-value=1.5e+02  Score=13.51  Aligned_cols=12  Identities=42%  Similarity=0.700  Sum_probs=8.2

Q ss_pred             HHHHHHCCCCCC
Q ss_conf             544442169985
Q gi|254780162|r   21 VLEDEFSNQPGS   32 (36)
Q Consensus        21 vledefsnqpgs   32 (36)
                      .+++-|.-+|||
T Consensus       123 hl~nAF~a~p~~  134 (134)
T 3fov_A          123 HLPGAFDATPGS  134 (134)
T ss_dssp             EEEEEECCCC--
T ss_pred             EEHHHHCCCCCC
T ss_conf             812001599999


No 7  
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli}
Probab=3.68  E-value=1.3e+02  Score=13.68  Aligned_cols=18  Identities=33%  Similarity=0.580  Sum_probs=12.9

Q ss_pred             HHHHHHHHCCCCCCCCCC
Q ss_conf             665444421699854659
Q gi|254780162|r   19 KSVLEDEFSNQPGSVGCF   36 (36)
Q Consensus        19 ksvledefsnqpgsvgcf   36 (36)
                      .-+..|||..|.+.|+-|
T Consensus        55 ~ll~sde~a~~~~aV~RF   72 (162)
T 3fmt_A           55 ELLLSDEYAEQKRAVNRF   72 (162)
T ss_dssp             HHHHSHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             987189999887489999


No 8  
>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana}
Probab=3.40  E-value=2.8e+02  Score=12.27  Aligned_cols=19  Identities=37%  Similarity=0.681  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHH-HHHCCCCCC
Q ss_conf             99987666544-442169985
Q gi|254780162|r   13 FSCIVEKSVLE-DEFSNQPGS   32 (36)
Q Consensus        13 fsciveksvle-defsnqpgs   32 (36)
                      +||- .|.+++ |||-+|||-
T Consensus        47 WsCC-~kr~~dF~eFl~i~GC   66 (74)
T 2xcm_E           47 WKCC-DVHVKEFDEFMEIPPC   66 (74)
T ss_dssp             ETTT-TEECSSHHHHTTCCCC
T ss_pred             CCCC-CCCCCCHHHHHCCCCC
T ss_conf             1577-8615698997247986


No 9  
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=3.25  E-value=2.1e+02  Score=12.79  Aligned_cols=15  Identities=40%  Similarity=0.483  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             987666544442169
Q gi|254780162|r   15 CIVEKSVLEDEFSNQ   29 (36)
Q Consensus        15 civeksvledefsnq   29 (36)
                      -..||+-+|.|..|+
T Consensus        32 Lt~Ek~kietEIknk   46 (50)
T 2a26_A           32 LTAEKSKIETEIKNK   46 (50)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999988999999888


No 10 
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=3.17  E-value=3e+02  Score=12.10  Aligned_cols=19  Identities=21%  Similarity=0.345  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHCCCCCC
Q ss_conf             9987666544442169985
Q gi|254780162|r   14 SCIVEKSVLEDEFSNQPGS   32 (36)
Q Consensus        14 sciveksvledefsnqpgs   32 (36)
                      ||--.++.-=|||-++||-
T Consensus        48 sCC~kk~~dF~eFl~i~gC   66 (75)
T 2yrt_A           48 SCCKRRTTDFSDFLSIVGC   66 (75)
T ss_dssp             SSSSCEESSHHHHTTCCCS
T ss_pred             CCCCCCCCCHHHHHCCCCC
T ss_conf             6789765798996047887


Done!