HHsearch alignment for GI: 254780163 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=100.00 E-value=0 Score=1872.78 Aligned_cols=727 Identities=42% Similarity=0.694 Sum_probs=674.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHH--HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 343899999999999999828995119999999820746--899999859998999999999964136545778886776
Q gi|254780163|r 3 FFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSD--AAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGFRVEC 80 (798)
Q Consensus 3 mfS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~--~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei 80 (798)
T Consensus 4 kfT~~a~~~L~~A~~~A~~~~h~~V~~eHLLlaLl~~~~~~~~~~L~~~~vd~~~l~~~l~~~~~~~~~-----~~~~~~ 78 (823)
T CHL00095 4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSLNVNLKDARKEVEKYIGRGSG-----FVAVEI 78 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-----CCCCCC
T ss_conf 366999999999999999859894089999999974998479999998699999999999999842699-----887886
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 46989999999999999980998125999878787377429999999849998999999983000000011121102443
Q gi|254780163|r 81 KPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVD 160 (798)
Q Consensus 81 ~~S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (798)
T Consensus 79 ~~s~~~~~vL~~A~~~a~~~~~~~I~~ehLllall~e~~~~a~~iL~~~gi~~~~~~~~~~~~~~~~~~~---------- 148 (823)
T CHL00095 79 PFTPRAKRVLELSLEEARILGHNYIGTEHLLLGLIREGEGVAARVLENLNVDLPKVRSLIINLIGEIAEV---------- 148 (823)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC----------
T ss_conf 8887999999999999998299804399999999708974799999987999999999999984545655----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 21000001244444445555445530356544258877548611222178999999998622677874896676411668
Q gi|254780163|r 161 GSSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA 240 (798)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGkta 240 (798)
T Consensus 149 -------------~~~~~~~~~~~~~L~ky~~dLT~~A~~GklDpvIGRd~EI~r~i~IL~RR~KNNpiLvGepGVGKTA 215 (823)
T CHL00095 149 -------------ILGGGTSREKTPTLEEFGNNLTKMAYEGNLDPVIGRDKEIERVIQILGRRTKNNPILIGEPGVGKTA 215 (823)
T ss_pred -------------CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHH
T ss_conf -------------6788666656556999978889999838999875956999999999977324885023799987999
Q ss_pred HHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC
Q ss_conf 99999999854898834520144554046753063431237899999998720389839997361663015544434477
Q gi|254780163|r 241 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD 320 (798)
Q Consensus 241 ive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d 320 (798)
T Consensus 216 IvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g-~~D 294 (823)
T CHL00095 216 IAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEG-AID 294 (823)
T ss_pred HHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCC-CHH
T ss_conf 9999999760889986875993688428877533422267999999999999857986999735165328897666-431
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHH
Q ss_conf 78888766302660388730489999985201114320014430687868999999861276654103512111789999
Q gi|254780163|r 321 ASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAV 400 (798)
Q Consensus 321 ~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av 400 (798)
T Consensus 295 aaNlLKPaLarGel~~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav 374 (823)
T CHL00095 295 AANILKPALARGKLQCIGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAA 374 (823)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 78876578648986699707889999985305889962684102899879999999999999987508850478999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q ss_conf 986542015556467988998653333211443-----------------------------------------------
Q gi|254780163|r 401 QLSVRHFTSRKLPDKAIDVIDEAGASQILQPLS----------------------------------------------- 433 (798)
Q Consensus 401 ~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~----------------------------------------------- 433 (798)
T Consensus 375 ~LS~RYi~dr~LPDKAIDllDeA~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (823)
T CHL00095 375 KLSDQYIKDRFLPDKAIDLLDEAGSRVRLINKQLPPAARELDKELRHILKDKDEAIRSQDFETAKQLRDREMEVRTQIAA 454 (823)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98776403777821788889999899998732586789999999999999999999674499999999889999999999
Q ss_pred ------------HHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCC
Q ss_conf ------------22113657899986631024531011100112334210000246653458999999999877520445
Q gi|254780163|r 434 ------------KRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLS 501 (798)
Q Consensus 434 ------------~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~ 501 (798)
T Consensus 455 ~~~~~~~~~~~~~~~~~v~~~dI~~vvs~~t-giPv~~~~~~e~~~l~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~ 533 (823)
T CHL00095 455 MKQSKKTEEELQKEVPVVTEKDIAEIVSAWT-GIPVNKLTKSESEKLIHMEETLHKRIIGQDEAVVAVSKAIRRARVGLK 533 (823)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-CCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9999874044323677207999999999986-898476334588999878887877840769999999999999970899
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCE
Q ss_conf 657874068861432003889999987---30477337720688612465301104780002564443100355515851
Q gi|254780163|r 502 DPNKPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYS 578 (798)
Q Consensus 502 ~~~rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~s 578 (798)
T Consensus 534 ~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~Pys 613 (823)
T CHL00095 534 NPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYT 613 (823)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCE
T ss_conf 89997468998789988779999999999747820258853510155420767458998766778788201988719986
Q ss_pred EEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHC--CCCCCCCCC------------H
Q ss_conf 77740445502899999999877750217799776125429999424214553303--689882111------------4
Q gi|254780163|r 579 VVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKA--RIGFGSSRN------------D 644 (798)
Q Consensus 579 Vvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~--~~g~~~~~~------------~ 644 (798)
T Consensus 614 VvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~ 693 (823)
T CHL00095 614 VVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLS 693 (823)
T ss_pred EEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99862131138899998876516884348999988431039997165055888741344343334454322023589999
Q ss_pred HHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 88999998728878817768289628899999999999999999999986698899988999999971898101532679
Q gi|254780163|r 645 DADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLE 724 (798)
Q Consensus 645 ~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~ 724 (798)
T Consensus 694 ~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~ 773 (823)
T CHL00095 694 NLVNEELKQYFRPEFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLR 773 (823)
T ss_pred HHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999998437987873278278618999999999999999999999996898599888999999995879776813688
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
Q ss_conf 999986235999999629676888489999607866
Q gi|254780163|r 725 RIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKS 760 (798)
Q Consensus 725 r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~~~ 760 (798)
T Consensus 774 R~I~~~i~~~ls~~il~g~~~~g~~-v~v~~~~~g~ 808 (823)
T CHL00095 774 RAIMRLLEDPLAEEVLSFKIKPGDS-LVVDVDKEGK 808 (823)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCE-EEEEECCCCC
T ss_conf 9999998899999997488899698-9999758997