HHsearch alignment for GI: 254780163 and conserved domain: CHL00181

Probab=99.43  E-value=1.1e-10  Score=95.97  Aligned_cols=224  Identities=16%  Similarity=0.264  Sum_probs=147.3

Q ss_pred             CCHHHHHHHHCCHHHHHHHCHHHHHHHHHHH-------HHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH----
Q ss_conf             0112334210000246653458999999999-------87752044565787406886143200388999998730----
Q gi|254780163|r  462 RDDDSVLSNLEKNLGTVVYGQEEAIKKLSSS-------IKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA----  530 (798)
Q Consensus       462 ~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~-------i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~----  530 (798)
T Consensus         8 ~~~~~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s-~h~vF~GnPGTGKTTVARl~a~il~~l   86 (287)
T CHL00181          8 EYNKTQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPG-LHMSFTGSPGTGKTTVALKMADILYRL   86 (287)
T ss_pred             HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             8645349999999988646969999999999999999999998799988876-538887899867999999999999986


Q ss_pred             ---CCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCH-HHHHCCCEEEEECCHHH---------CCHHHHHHHH
Q ss_conf             ---4773377206886124653011047800025644431003-55515851777404455---------0289999999
Q gi|254780163|r  531 ---LGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILAD-SVDQNPYSVVLLDEIEK---------SHPDVLNILL  597 (798)
Q Consensus       531 ---~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte-~vr~~P~sVvl~DEiEK---------Ah~~v~~~ll  597 (798)
T Consensus        87 G~L~~g~vve~~r---------~dLvg---~yvG~T--a~kt~~~i~~a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl  152 (287)
T CHL00181         87 GYIKKGHLITVTR---------DDLVG---QYIGHT--APKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGAEAIEILL  152 (287)
T ss_pred             CCCCCCEEEEECH---------HHHCC---CCCCCC--HHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             9955895899535---------88416---353521--699999999645987998244653578899983799999999


Q ss_pred             HHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHH
Q ss_conf             98777502177997761254299994242145533036898821114889999987288788177682896288999999
Q gi|254780163|r  598 QIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDII  677 (798)
Q Consensus       598 qild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~  677 (798)
T Consensus       153 ~~me~~~-----~------~lvvI~A-------------GY------~~eM~~fl~-~NpGL~sRf~~~i~F~dYt~~EL  201 (287)
T CHL00181        153 QVMENQR-----D------DLVVIFA-------------GY------KDRMDKFYE-SNPGLSSRVANHVDFPDYTPEEL  201 (287)
T ss_pred             HHHHHCC-----C------CEEEEEE-------------CC------HHHHHHHHH-HCCCHHHHCCCEEECCCCCHHHH
T ss_conf             9987079-----9------8899984-------------67------899999998-59047876887237798599999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECHH----HHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999866988999889----999999718981015-326799999862359999996
Q gi|254780163|r  678 RQVVHKFIMKLELQLQEKGISFHFSEE----VINWLVSHGYDVKMG-ARPLERIIKEHVKVPLADEIL  740 (798)
Q Consensus       678 ~~i~~~~l~~l~~~l~~~~i~l~~~~~----~~~~l~~~~~~~~~G-AR~l~r~i~~~i~~~la~~il  740 (798)
T Consensus       202 ~~I~~~~~~-------~~~~~--l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~~qa~Rl~~  260 (287)
T CHL00181        202 LQIAKMMLE-------EQQYQ--LTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARMRQANRIFA  260 (287)
T ss_pred             HHHHHHHHH-------HCCCC--CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999-------86982--587999999999998508999874899999999999999988656