HHsearch alignment for GI: 254780163 and conserved domain: COG0324

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis].

Probab=95.71  E-value=0.011  Score=38.35  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHC----CC--------------C-CHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHH
Q ss_conf             87489667641166899999999854----89--------------8-83452014455404675306343123789999
Q gi|254780163|r  226 NNPLYVGDPGVGKTAIAEGFAKQIVD----GM--------------V-PDILLGARIFSLDMGNLIAGTRYRGDFEERIK  286 (798)
Q Consensus       226 Nn~~lvG~~gvGktaive~la~~i~~----~~--------------v-p~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~  286 (798)
T Consensus         4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~a~   82 (308)
T COG0324           4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRDAL   82 (308)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCC-CCCHHHHHHHHH
T ss_conf             3799989887577899999999829928930235531888630799999998589978754568322-554999999999


Q ss_pred             HHHHHHCCCCCEEEEE
Q ss_conf             9998720389839997
Q gi|254780163|r  287 KIVKEIESYANAILYI  302 (798)
Q Consensus       287 ~~~~~~~~~~~~ilfi  302 (798)
T Consensus        83 ~~i~~i~~rgk~pIlV   98 (308)
T COG0324          83 AAIDDILARGKLPILV   98 (308)
T ss_pred             HHHHHHHHCCCCCEEE
T ss_conf             9999999689987997