HHsearch alignment for GI: 254780163 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.38 E-value=1.7e-06 Score=65.82 Aligned_cols=169 Identities=24% Similarity=0.310 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHH---------------EEEEEEEEH
Q ss_conf 2217899999999862-267787-48966764116689999999985489883452---------------014455404
Q gi|254780163|r 206 LVGRHEEINRTIQILC-RRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILL---------------GARIFSLDM 268 (798)
Q Consensus 206 VIGRd~EI~riiqIL~-RR~KNn-~~lvG~~gvGktaive~la~~i~~~~vp~~l~---------------~~~i~~ld~ 268 (798)
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPT-GLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHCCCCCCCEEEECC
T ss_conf 4332358999999998658887610037999997899999999996586643-345520022444320256886599773
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCEEEEEECCH
Q ss_conf 675306343123789999999872038----98399973616630155444344777888876630--266038873048
Q gi|254780163|r 269 GNLIAGTRYRGDFEERIKKIVKEIESY----ANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAVRCIGSTTY 342 (798)
Q Consensus 269 ~~l~ag~~~rg~fe~r~~~~~~~~~~~----~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~~~IgatT~ 342 (798)
T Consensus 82 s~~----~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m---------t~~A~nallk~lEep~~~~~~il~~n- 147 (325)
T COG0470 82 SDL----RKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL---------TEDAANALLKTLEEPPKNTRFILITN- 147 (325)
T ss_pred CCC----CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC---------CHHHHHHHHHHCCCCCCCEEEEEEEC-
T ss_conf 213----3330069999999986044656677269997320326---------98888767543324888716999749-
Q ss_pred HHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCC
Q ss_conf 999998520111432001443068786899999986127665410351211178999998654201
Q gi|254780163|r 343 SEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFT 408 (798)
Q Consensus 343 ~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~ 408 (798)
T Consensus 148 -~~~~il~---tI~SRc~~i~f~~~~~~~~i~~~e---------------~~~l~~i~~~~~gd~r 194 (325)
T COG0470 148 -DPSKILP---TIRSRCQRIRFKPPSRLEAIAWLE---------------DQGLEEIAAVAEGDAR 194 (325)
T ss_pred -CHHHCHH---HHHHHEEEEECCCCCHHHHHHHHH---------------HHHHHHHHHHHCCHHH
T ss_conf -8555647---877560788767741889999850---------------7579999987040688