HHsearch alignment for GI: 254780163 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=100.00  E-value=0  Score=1854.19  Aligned_cols=722  Identities=49%  Similarity=0.790  Sum_probs=668.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             34389999999999999982899511999999982074689999985999899999999996413654577888677646
Q gi|254780163|r    3 FFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGFRVECKP   82 (798)
Q Consensus         3 mfS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei~~   82 (798)
T Consensus         1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----~-~~~   74 (786)
T COG0542           1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKVLG-----S-PYL   74 (786)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-----C-CCC
T ss_conf             9488999999999999998579866599999999748631799987499999999999999842677777-----7-787


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf             98999999999999998099812599987878737742999999984999899999998300000001112110244321
Q gi|254780163|r   83 TSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGS  162 (798)
Q Consensus        83 S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~  162 (798)
T Consensus        75 s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------  139 (786)
T COG0542          75 SPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGN---------------  139 (786)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC---------------
T ss_conf             87799999999999875157655589999998617622789999866577777999999973466---------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00000124444444555544553035654425887754861122217899999999862267787489667641166899
Q gi|254780163|r  163 SAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIA  242 (798)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaiv  242 (798)
T Consensus       140 -----------~~~~~~~~~~~~~L~~~~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIv  208 (786)
T COG0542         140 -----------EVDSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIV  208 (786)
T ss_pred             -----------CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHH
T ss_conf             -----------667766653244699874114799865898877374799999999983568899847668988899999


Q ss_pred             HHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHH
Q ss_conf             99999985489883452014455404675306343123789999999872038983999736166301554443447778
Q gi|254780163|r  243 EGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDAS  322 (798)
Q Consensus       243 e~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~a  322 (798)
T Consensus       209 EGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAa  288 (786)
T COG0542         209 EGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAA  288 (786)
T ss_pred             HHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHH
T ss_conf             89999974699997875887997148767464653573899999999998517984999823554057776666651256


Q ss_pred             HHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHH
Q ss_conf             88876630266038873048999998520111432001443068786899999986127665410351211178999998
Q gi|254780163|r  323 NLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQL  402 (798)
Q Consensus       323 n~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~l  402 (798)
T Consensus       289 NiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~L  368 (786)
T COG0542         289 NLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTL  368 (786)
T ss_pred             HHHHHHHHCCCEEEEEECCHHHHHHHHHHCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
T ss_conf             64677874587379973558999887330667784675102799898999999987788887706964337999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---H------------------------HHHC------------------
Q ss_conf             654201555646798899865333321144---3------------------------2211------------------
Q gi|254780163|r  403 SVRHFTSRKLPDKAIDVIDEAGASQILQPL---S------------------------KRRK------------------  437 (798)
Q Consensus       403 s~ryi~~r~lPdkAidllDea~a~~~~~~~---~------------------------~~~~------------------  437 (798)
T Consensus       369 S~RYI~dR~LPDKAIDLiDeA~A~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  448 (786)
T COG0542         369 SDRYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEK  448 (786)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98645567899467778899999997203488405689999999888898874403688888877899875410056788


Q ss_pred             ----CCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf             ----3657899986631024531011100112334210000246653458999999999877520445657874068861
Q gi|254780163|r  438 ----FITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFS  513 (798)
Q Consensus       438 ----~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~  513 (798)
T Consensus       449 ~~~~~v~~~~Ia~vv~~~T-gIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~  527 (786)
T COG0542         449 ELEAEVDEDDIAEVVARWT-GIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFL  527 (786)
T ss_pred             HHHHCCCHHHHHHHHHHHH-CCCHHHHCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf             8762267989999999987-898364133258899867999736501739999999999999856999999873578866


Q ss_pred             CCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCH
Q ss_conf             432003889999987---30477337720688612465301104780002564443100355515851777404455028
Q gi|254780163|r  514 GPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHP  590 (798)
Q Consensus       514 GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~  590 (798)
T Consensus       528 GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp  607 (786)
T COG0542         528 GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP  607 (786)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHHCCH
T ss_conf             78865699999999999659974445545687777877998727999872006554003766069986888412644088


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCC---CCCCCCHHHHHHHHHHHCCHHHHCCCCEEE
Q ss_conf             99999999877750217799776125429999424214553303689---882111488999998728878817768289
Q gi|254780163|r  591 DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIG---FGSSRNDDADKEALRNFLSPEFLNRLDSII  667 (798)
Q Consensus       591 ~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g---~~~~~~~~~~~~~l~~~f~peflnRid~ii  667 (798)
T Consensus       608 dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II  687 (786)
T COG0542         608 DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEII  687 (786)
T ss_pred             HHHHHHHHHHCCCCEECCCCCEEECCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEE
T ss_conf             99999999846780554899888430028998450265989753134321004678899999998538998985126178


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             62889999999999999999999998669889998899999997189810153267999998623599999962967688
Q gi|254780163|r  668 PFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKG  747 (798)
Q Consensus       668 ~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g  747 (798)
T Consensus       688 ~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~  767 (786)
T COG0542         688 PFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDG  767 (786)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             50679989999999999999999998689559988899999999646877673679999999998999999984665799


Q ss_pred             CEEEEEEEECC
Q ss_conf             84899996078
Q gi|254780163|r  748 GGVVKVSLNPD  758 (798)
Q Consensus       748 ~~~~~v~~~~~  758 (798)
T Consensus       768 ~~-v~v~~~~~  777 (786)
T COG0542         768 GT-VKVDVDDE  777 (786)
T ss_pred             CE-EEEEECCC
T ss_conf             67-99995176