HHsearch alignment for GI: 254780163 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=1854.19 Aligned_cols=722 Identities=49% Similarity=0.790 Sum_probs=668.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 34389999999999999982899511999999982074689999985999899999999996413654577888677646
Q gi|254780163|r 3 FFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNLLNYIDNDSSNKLKNGFRVECKP 82 (798)
Q Consensus 3 mfS~~a~~vL~~A~~lAk~~~H~~Vt~EHLLLaLL~d~~~~~iL~~~giD~~~Lk~~Le~~L~~~~~~~~~~~~~~ei~~ 82 (798)
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----~-~~~ 74 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKVLG-----S-PYL 74 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-----C-CCC
T ss_conf 9488999999999999998579866599999999748631799987499999999999999842677777-----7-787
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 98999999999999998099812599987878737742999999984999899999998300000001112110244321
Q gi|254780163|r 83 TSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGS 162 (798)
Q Consensus 83 S~~l~rVL~~A~~~A~~~G~~~I~~eHLLLALL~e~ds~a~~iL~~~gis~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (798)
T Consensus 75 s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------- 139 (786)
T COG0542 75 SPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGN--------------- 139 (786)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC---------------
T ss_conf 87799999999999875157655589999998617622789999866577777999999973466---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 00000124444444555544553035654425887754861122217899999999862267787489667641166899
Q gi|254780163|r 163 SAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIA 242 (798)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaiv 242 (798)
T Consensus 140 -----------~~~~~~~~~~~~~L~~~~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIv 208 (786)
T COG0542 140 -----------EVDSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIV 208 (786)
T ss_pred -----------CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHH
T ss_conf -----------667766653244699874114799865898877374799999999983568899847668988899999
Q ss_pred HHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHH
Q ss_conf 99999985489883452014455404675306343123789999999872038983999736166301554443447778
Q gi|254780163|r 243 EGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDAS 322 (798)
Q Consensus 243 e~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~a 322 (798)
T Consensus 209 EGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAa 288 (786)
T COG0542 209 EGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAA 288 (786)
T ss_pred HHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHH
T ss_conf 89999974699997875887997148767464653573899999999998517984999823554057776666651256
Q ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHH
Q ss_conf 88876630266038873048999998520111432001443068786899999986127665410351211178999998
Q gi|254780163|r 323 NLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQL 402 (798)
Q Consensus 323 n~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~l 402 (798)
T Consensus 289 NiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~L 368 (786)
T COG0542 289 NLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTL 368 (786)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
T ss_conf 64677874587379973558999887330667784675102799898999999987788887706964337999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---H------------------------HHHC------------------
Q ss_conf 654201555646798899865333321144---3------------------------2211------------------
Q gi|254780163|r 403 SVRHFTSRKLPDKAIDVIDEAGASQILQPL---S------------------------KRRK------------------ 437 (798)
Q Consensus 403 s~ryi~~r~lPdkAidllDea~a~~~~~~~---~------------------------~~~~------------------ 437 (798)
T Consensus 369 S~RYI~dR~LPDKAIDLiDeA~A~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (786)
T COG0542 369 SDRYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEK 448 (786)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98645567899467778899999997203488405689999999888898874403688888877899875410056788
Q ss_pred ----CCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf ----3657899986631024531011100112334210000246653458999999999877520445657874068861
Q gi|254780163|r 438 ----FITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFS 513 (798)
Q Consensus 438 ----~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~ 513 (798)
T Consensus 449 ~~~~~v~~~~Ia~vv~~~T-gIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~ 527 (786)
T COG0542 449 ELEAEVDEDDIAEVVARWT-GIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFL 527 (786)
T ss_pred HHHHCCCHHHHHHHHHHHH-CCCHHHHCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 8762267989999999987-898364133258899867999736501739999999999999856999999873578866
Q ss_pred CCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCH
Q ss_conf 432003889999987---30477337720688612465301104780002564443100355515851777404455028
Q gi|254780163|r 514 GPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHP 590 (798)
Q Consensus 514 GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~ 590 (798)
T Consensus 528 GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp 607 (786)
T COG0542 528 GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP 607 (786)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHHCCH
T ss_conf 78865699999999999659974445545687777877998727999872006554003766069986888412644088
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCC---CCCCCCHHHHHHHHHHHCCHHHHCCCCEEE
Q ss_conf 99999999877750217799776125429999424214553303689---882111488999998728878817768289
Q gi|254780163|r 591 DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIG---FGSSRNDDADKEALRNFLSPEFLNRLDSII 667 (798)
Q Consensus 591 ~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g---~~~~~~~~~~~~~l~~~f~peflnRid~ii 667 (798)
T Consensus 608 dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II 687 (786)
T COG0542 608 DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEII 687 (786)
T ss_pred HHHHHHHHHHCCCCEECCCCCEEECCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEE
T ss_conf 99999999846780554899888430028998450265989753134321004678899999998538998985126178
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 62889999999999999999999998669889998899999997189810153267999998623599999962967688
Q gi|254780163|r 668 PFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKG 747 (798)
Q Consensus 668 ~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g 747 (798)
T Consensus 688 ~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~ 767 (786)
T COG0542 688 PFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDG 767 (786)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 50679989999999999999999998689559988899999999646877673679999999998999999984665799
Q ss_pred CEEEEEEEECC
Q ss_conf 84899996078
Q gi|254780163|r 748 GGVVKVSLNPD 758 (798)
Q Consensus 748 ~~~~~v~~~~~ 758 (798)
T Consensus 768 ~~-v~v~~~~~ 777 (786)
T COG0542 768 GT-VKVDVDDE 777 (786)
T ss_pred CE-EEEEECCC
T ss_conf 67-99995176