HHsearch alignment for GI: 254780163 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=95.81 E-value=0.031 Score=35.18 Aligned_cols=175 Identities=23% Similarity=0.372 Sum_probs=109.0
Q ss_pred CEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH------------HHHHHHHHHHHHC
Q ss_conf 74896-6764116689999999985489883452014455404675306343123------------7899999998720
Q gi|254780163|r 227 NPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD------------FEERIKKIVKEIE 293 (798)
Q Consensus 227 n~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~------------fe~r~~~~~~~~~ 293 (798)
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--------~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--------KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCC--------CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHH
T ss_conf 1799736898779899999999987059--------57999677678999999998289964557741128999999998
Q ss_pred CCCCEEEEECCHHHHHCCC--CCCCCCC-----CHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCHH------HHHHC
Q ss_conf 3898399973616630155--4443447-----77888876630266038-873048999998520111------43200
Q gi|254780163|r 294 SYANAILYIDEIHTLVGAG--SASGISV-----DASNLLKPALSSGAVRC-IGSTTYSEYRQFFEKDKA------LVRRF 359 (798)
Q Consensus 294 ~~~~~ilfideih~ligag--~~~g~~~-----d~an~lkP~L~rg~~~~-IgatT~~ey~~~~e~d~a------l~rrF 359 (798)
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~~SapG-sVsQVRe~t~~L~~~AK~~~i~~fiVG---------HVTKeG~IAGPrvLEHmV 235 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEITSAPG-SVSQVREVAAELMRLAKTKNIAIFIVG---------HVTKEGAIAGPRVLEHMV 235 (456)
T ss_pred HCCCCEEEEECCCEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEE---------EECCCCCCCCCHHEEEEE
T ss_conf 5499789996541230263357998-589999999999999987597399998---------882466326840043653
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCE---ECCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q ss_conf 1443068786899999986127665410351---211178999998654201555--64679889
Q gi|254780163|r 360 QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLR---YSKEAIRAAVQLSVRHFTSRK--LPDKAIDV 419 (798)
Q Consensus 360 ~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~---~~~~al~~av~ls~ryi~~r~--lPdkAidl 419 (798)
T Consensus 236 DtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~ 300 (456)
T COG1066 236 DTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVV 300 (456)
T ss_pred EEEEEEECCCCCCEEEEEHHCCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCCCCCCEEEE
T ss_conf 68999830577755650032136776553268898438846803827867422677899867999