HHsearch alignment for GI: 254780163 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.65 E-value=1.6e-14 Score=123.49 Aligned_cols=268 Identities=23% Similarity=0.386 Sum_probs=150.1
Q ss_pred HCCHHHHHHHCHHHHHHHHHHHH----HHHHC--CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 00002466534589999999998----77520--4456578740688614320038899999873047733772068861
Q gi|254780163|r 471 LEKNLGTVVYGQEEAIKKLSSSI----KIARA--GLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYM 544 (798)
Q Consensus 471 l~~~l~~~v~GQ~~ai~~v~~~i----~~~~~--gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~ 544 (798)
T Consensus 9 IV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PK-NILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 9 IVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 9999876740717778899999998999975478776225755-358888888768899999999848983788764213
Q ss_pred CCCCCCHHCCCCCHHCCCCCCCC---CCH------------HHHHC--------------CCE--EEEECCHHHCCHHHH
Q ss_conf 24653011047800025644431---003------------55515--------------851--777404455028999
Q gi|254780163|r 545 ERHAVSRLIGAPPGYVGFGQGGI---LAD------------SVDQN--------------PYS--VVLLDEIEKSHPDVL 593 (798)
Q Consensus 545 e~~~vs~LiGappGYvG~~egg~---Lte------------~vr~~--------------P~s--Vvl~DEiEKAh~~v~ 593 (798)
T Consensus 88 EV-----------GYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r 156 (444)
T COG1220 88 EV-----------GYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATR 156 (444)
T ss_pred EC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 40-----------3256458999999999999999999999999999999999999986698755466673000026799
Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCE----EEEEECCCCHHHHHH------CCCCCCCCCCH-------------------
Q ss_conf 9999987775021779977612542----999942421455330------36898821114-------------------
Q gi|254780163|r 594 NILLQIMDYGILTDQSGKKISFRNV----ILIMTTNAGALEMSK------ARIGFGSSRND------------------- 644 (798)
Q Consensus 594 ~~llqild~G~ltd~~Gr~vdf~n~----iii~TsN~G~~~~~~------~~~g~~~~~~~------------------- 644 (798)
T Consensus 157 ~~~rkkLr~GeLdd~e-Ieiev~~~~~~~~~i~~~-pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KL 234 (444)
T COG1220 157 EKFRKKLREGELDDKE-IEIEVADKGPPGFEIMGP-PGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKL 234 (444)
T ss_pred HHHHHHHHCCCCCCCE-EEEEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 9999999758877617-999972267875346899-85789999999999864688730366569999998777788762
Q ss_pred ----HHHHHHH---------------------------------H-----------------------------------
Q ss_conf ----8899999---------------------------------8-----------------------------------
Q gi|254780163|r 645 ----DADKEAL---------------------------------R----------------------------------- 652 (798)
Q Consensus 645 ----~~~~~~l---------------------------------~----------------------------------- 652 (798)
T Consensus 235 id~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~s 314 (444)
T COG1220 235 IDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVA 314 (444)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCEECC
T ss_conf 69999999999998856908973466787437889988664320102103105754431544401443788714820037
Q ss_pred --HHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH----HHHHHHHCCCEEEECHHHHHHHHHCCCC-----CCCCCH
Q ss_conf --72887881776828962889999999999999999----9999986698899988999999971898-----101532
Q gi|254780163|r 653 --NFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMK----LELQLQEKGISFHFSEEVINWLVSHGYD-----VKMGAR 721 (798)
Q Consensus 653 --~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~----l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GAR 721 (798)
T Consensus 315 KPSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGAR 394 (444)
T COG1220 315 KPSDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGAR 394 (444)
T ss_pred CHHHCCHHHCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 81321766627773488704489989999963760789999999973158348853799999999999855430001178
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
Q ss_conf 679999986235999999629676888489999607
Q gi|254780163|r 722 PLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNP 757 (798)
Q Consensus 722 ~l~r~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~ 757 (798)
T Consensus 395 RLhTvlErlLed-----iSFeA~d~~g~~v~Id~~y 425 (444)
T COG1220 395 RLHTVLERLLED-----ISFEAPDMSGQKVTIDAEY 425 (444)
T ss_pred HHHHHHHHHHHH-----HCCCCCCCCCCEEEECHHH
T ss_conf 899999999987-----0705877899758975899