HHsearch alignment for GI: 254780163 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=97.92 E-value=0.00029 Score=49.77 Aligned_cols=176 Identities=20% Similarity=0.256 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCC---C-
Q ss_conf 112221789999999986226--7787489667641166899999999854898834520144554046753063---4-
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRR--SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGT---R- 276 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR--~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~---~- 276 (798)
T Consensus 77 ~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH-~~s~r~-----~~~PFI~~NCa~~~en~~~~eL 150 (403)
T COG1221 77 LDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIH-ALSARR-----AEAPFIAFNCAAYSENLQEAEL 150 (403)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-HHHHCC-----CCCCEEEEEHHHHCCCHHHHHH
T ss_conf 6666356888999999998618999847986688753889999999-861213-----5898799777773767777777
Q ss_pred ---CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEEEEEC
Q ss_conf ---312378999999987203898399973616630155444344777888876630266-------------0388730
Q gi|254780163|r 277 ---YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA-------------VRCIGST 340 (798)
Q Consensus 277 ---~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~-------------~~~Igat 340 (798)
T Consensus 151 FG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~----~~-----Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT 221 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP----EG-----QEKLLRVLEEGEYRRVGGSQPRPVDVRLICAT 221 (403)
T ss_pred HCCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCCH----HH-----HHHHHHHHHCCCEEECCCCCCCCCCCEEEECC
T ss_conf 3200000025667867642052797776563653798----58-----99999998718657668888867774045135
Q ss_pred CHHHHHHHHHCCHHHHHHCEEEEECCCCHHHH----HHHHHHHHHHHHHHCCCEECCH
Q ss_conf 48999998520111432001443068786899----9999861276654103512111
Q gi|254780163|r 341 TYSEYRQFFEKDKALVRRFQKIDVSEPSIEDA----IEIVKGIKPYFEEHHQLRYSKE 394 (798)
Q Consensus 341 T~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~----~~iL~~~~~~ye~~h~v~~~~~ 394 (798)
T Consensus 222 ~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~ 278 (403)
T COG1221 222 TEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVD 278 (403)
T ss_pred CCCHHHHHHHH-CCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 66879998740-5255641675431897243555599999999999999739998888