HHsearch alignment for GI: 254780163 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.09 E-value=7.9e-09 Score=82.61 Aligned_cols=214 Identities=25% Similarity=0.334 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHCCCCC-------------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC
Q ss_conf 21789999999986226778-------------74896676411668999999998548988345201445540467530
Q gi|254780163|r 207 VGRHEEINRTIQILCRRSKN-------------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA 273 (798)
Q Consensus 207 IGRd~EI~riiqIL~RR~KN-------------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 273 (798)
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvgSElV- 222 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVGSELV- 222 (406)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCC----------CCEEEEECCHHHH-
T ss_conf 58899999999984033668889997499999712766899975889999987205----------8669994219999-
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC---------HHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 63431237899999998720389839997361663015544434477---------788887663026603887304899
Q gi|254780163|r 274 GTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD---------ASNLLKPALSSGAVRCIGSTTYSE 344 (798)
Q Consensus 274 g~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d---------~an~lkP~L~rg~~~~IgatT~~e 344 (798)
T Consensus 223 -qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 223 -QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred -HHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf -9983411699999999874149849998311223111136888850999999999998605889788768998558855
Q ss_pred HHHHHHCCHHHHH--HCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9998520111432--001-4430687868999999861276654103512111-78999998654201555646798899
Q gi|254780163|r 345 YRQFFEKDKALVR--RFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKE-AIRAAVQLSVRHFTSRKLPDKAIDVI 420 (798)
Q Consensus 345 y~~~~e~d~al~r--rF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~-al~~av~ls~ryi~~r~lPdkAidll 420 (798)
T Consensus 302 -----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk------M~l~~dvd~e~la~~~~g~------sGAdl--- 361 (406)
T COG1222 302 -----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK------MNLADDVDLELLARLTEGF------SGADL--- 361 (406)
T ss_pred -----CCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHH------CCCCCCCCHHHHHHHCCCC------CHHHH---
T ss_conf -----557665088754530116898978999999987621------4676676999998753899------56779---
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 86533332114432211365789998663102
Q gi|254780163|r 421 DEAGASQILQPLSKRRKFITEKDIKKTIASMN 452 (798)
Q Consensus 421 Dea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~ 452 (798)
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHHHHHCCCEECHHHHHHHHHHHH
T ss_conf 99999875999986047333999999999997