HHsearch alignment for GI: 254780163 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.09  E-value=7.9e-09  Score=82.61  Aligned_cols=214  Identities=25%  Similarity=0.334  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCC-------------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC
Q ss_conf             21789999999986226778-------------74896676411668999999998548988345201445540467530
Q gi|254780163|r  207 VGRHEEINRTIQILCRRSKN-------------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA  273 (798)
Q Consensus       207 IGRd~EI~riiqIL~RR~KN-------------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a  273 (798)
T Consensus       154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvgSElV-  222 (406)
T COG1222         154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVGSELV-  222 (406)
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCC----------CCEEEEECCHHHH-
T ss_conf             58899999999984033668889997499999712766899975889999987205----------8669994219999-


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC---------HHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf             63431237899999998720389839997361663015544434477---------788887663026603887304899
Q gi|254780163|r  274 GTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD---------ASNLLKPALSSGAVRCIGSTTYSE  344 (798)
Q Consensus       274 g~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d---------~an~lkP~L~rg~~~~IgatT~~e  344 (798)
T Consensus       223 -qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D  301 (406)
T COG1222         223 -QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD  301 (406)
T ss_pred             -HHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf             -9983411699999999874149849998311223111136888850999999999998605889788768998558855


Q ss_pred             HHHHHHCCHHHHH--HCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             9998520111432--001-4430687868999999861276654103512111-78999998654201555646798899
Q gi|254780163|r  345 YRQFFEKDKALVR--RFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKE-AIRAAVQLSVRHFTSRKLPDKAIDVI  420 (798)
Q Consensus       345 y~~~~e~d~al~r--rF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~-al~~av~ls~ryi~~r~lPdkAidll  420 (798)
T Consensus       302 -----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk------M~l~~dvd~e~la~~~~g~------sGAdl---  361 (406)
T COG1222         302 -----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK------MNLADDVDLELLARLTEGF------SGADL---  361 (406)
T ss_pred             -----CCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHH------CCCCCCCCHHHHHHHCCCC------CHHHH---
T ss_conf             -----557665088754530116898978999999987621------4676676999998753899------56779---


Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf             86533332114432211365789998663102
Q gi|254780163|r  421 DEAGASQILQPLSKRRKFITEKDIKKTIASMN  452 (798)
Q Consensus       421 Dea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~  452 (798)
T Consensus       362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~  393 (406)
T COG1222         362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKVV  393 (406)
T ss_pred             HHHHHHHHHHHHHHCCCEECHHHHHHHHHHHH
T ss_conf             99999875999986047333999999999997