HHsearch alignment for GI: 254780163 and conserved domain: COG1223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=99.23 E-value=4.9e-10 Score=91.26 Aligned_cols=203 Identities=28% Similarity=0.411 Sum_probs=131.9
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCC-----CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC
Q ss_conf 2466534589999999998775204456578-----74068861432003889999987304773377206886124653
Q gi|254780163|r 475 LGTVVYGQEEAIKKLSSSIKIARAGLSDPNK-----PIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 475 l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~r-----P~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v 549 (798)
T Consensus 119 t~ddViGqEeAK~kcrli~~y----LenPe~Fg~WAPk-nVLFyGppGTGKTm~Akalane~kvp~l~vkat-------- 185 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEY----LENPERFGDWAPK-NVLFYGPPGTGKTMMAKALANEAKVPLLLVKAT-------- 185 (368)
T ss_pred CHHHHHCHHHHHHHHHHHHHH----HHCHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHCCCCCCEEEECHH--------
T ss_conf 176641639888887999999----6496876345754-168778999648799998725457854871168--------
Q ss_pred CHHCCCCCHHCCCCC--CCCCCHHHHHCCCEEEEECCHHHCC------------HHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 011047800025644--4310035551585177740445502------------89999999987775021779977612
Q gi|254780163|r 550 SRLIGAPPGYVGFGQ--GGILADSVDQNPYSVVLLDEIEKSH------------PDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 550 s~LiGappGYvG~~e--gg~Lte~vr~~P~sVvl~DEiEKAh------------~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
T Consensus 186 -~liGe---hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-gi-~eneG----- 254 (368)
T COG1223 186 -ELIGE---HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-GI-KENEG----- 254 (368)
T ss_pred -HHHHH---HHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CC-CCCCC-----
T ss_conf -88887---743598999999998875198499840024555304578864549999999998501-74-45775-----
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54299994242145533036898821114889999987288788177682896288999999999999999999999866
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEK 695 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~ 695 (798)
T Consensus 255 --VvtIaaTN-----------------~p~~LD~aiR--------sRFEeEIEF~LP~~eEr~~ile~y~k~~------- 300 (368)
T COG1223 255 --VVTIAATN-----------------RPELLDPAIR--------SRFEEEIEFKLPNDEERLEILEYYAKKF------- 300 (368)
T ss_pred --EEEEEECC-----------------CHHHCCHHHH--------HHHHHEEEEECCCHHHHHHHHHHHHHHC-------
T ss_conf --69995059-----------------8465078888--------6556506564888589999999989858-------
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 988999889999999718981015326799999862359999996296
Q gi|254780163|r 696 GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGK 743 (798)
Q Consensus 696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~ 743 (798)
T Consensus 301 Plpv~~~---~~~~~~~t--~g~SgRd---ikekvlK~aLh~Ai~ed~ 340 (368)
T COG1223 301 PLPVDAD---LRYLAAKT--KGMSGRD---IKEKVLKTALHRAIAEDR 340 (368)
T ss_pred CCCCCCC---HHHHHHHH--CCCCCHH---HHHHHHHHHHHHHHHHCH
T ss_conf 9765568---99999984--7877206---899999999999987134