HHsearch alignment for GI: 254780163 and conserved domain: COG1223

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=98.80  E-value=2.5e-07  Score=71.80  Aligned_cols=221  Identities=26%  Similarity=0.417  Sum_probs=143.4

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC----------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE
Q ss_conf             588775486112221789999999986226778----------7489667641166899999999854898834520144
Q gi|254780163|r  194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKN----------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI  263 (798)
Q Consensus       194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KN----------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i  263 (798)
T Consensus       111 ~~e~~~~it~ddViGqEeA-K~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan---e~kvp-------~  179 (368)
T COG1223         111 DREIISDITLDDVIGQEEA-KRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN---EAKVP-------L  179 (368)
T ss_pred             HHHHHCCCCHHHHHCHHHH-HHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHC---CCCCC-------E
T ss_conf             5566136617664163988-88879999996496876345754168778999648799998725---45785-------4


Q ss_pred             EEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCC-CCCCCCCCCHH---HHHHHHH----CCCCEE
Q ss_conf             554046753063431237899999998720389839997361663015-54443447778---8887663----026603
Q gi|254780163|r  264 FSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGA-GSASGISVDAS---NLLKPAL----SSGAVR  335 (798)
Q Consensus       264 ~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~liga-g~~~g~~~d~a---n~lkP~L----~rg~~~  335 (798)
T Consensus       180 l~vkat~liG--ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelDgi~eneGVv  256 (368)
T COG1223         180 LLVKATELIG--EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELDGIKENEGVV  256 (368)
T ss_pred             EEECHHHHHH--HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             8711688888--77435989999999988751984998400245553045788-64549999999998501744577569


Q ss_pred             EEEECCHHHHHHHHHCCHHHHHHCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHH----HHHHHCCCC
Q ss_conf             8873048999998520111432001-44306878689999998612766541035121117899999----865420155
Q gi|254780163|r  336 CIGSTTYSEYRQFFEKDKALVRRFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQ----LSVRHFTSR  410 (798)
Q Consensus       336 ~IgatT~~ey~~~~e~d~al~rrF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~----ls~ryi~~r  410 (798)
T Consensus       257 tIaaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~----y~k~~Plpv~~~-~~~~~~~t~g~SgRdikek  326 (368)
T COG1223         257 TIAATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEY----YAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEK  326 (368)
T ss_pred             EEEECCCHH-----HCCHHHHHHHHHEEEEECCCHHHHHHHHHH----HHHHCCCCCCCC-HHHHHHHHCCCCCHHHHHH
T ss_conf             995059846-----507888865565065648885899999999----898589765568-9999998478772068999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             5646798899865333321144322113657899986631
Q gi|254780163|r  411 KLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIAS  450 (798)
Q Consensus       411 ~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~  450 (798)
T Consensus       327 vl--------K~a----Lh~Ai~ed~e~v~~edie~al~k  354 (368)
T COG1223         327 VL--------KTA----LHRAIAEDREKVEREDIEKALKK  354 (368)
T ss_pred             HH--------HHH----HHHHHHHCHHHHHHHHHHHHHHH
T ss_conf             99--------999----99998713444338899999986