HHsearch alignment for GI: 254780163 and conserved domain: COG1241
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair].
Probab=98.54 E-value=1e-05 Score=60.16 Aligned_cols=255 Identities=20% Similarity=0.214 Sum_probs=150.6
Q ss_pred HHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCC-------EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEH
Q ss_conf 42100002466534589999999998775204456578740-------68861432003889999987304773377206
Q gi|254780163|r 468 LSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIG-------CYVFSGPTGVGKTEISKQLAFALGVQLLRFDM 540 (798)
Q Consensus 468 l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g-------~flf~GptGvGKTelak~la~~~~~~lir~dm 540 (798)
T Consensus 277 ~~~l~~SiaPsIyG~e~VKkAilLqLf----gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyts-- 350 (682)
T COG1241 277 YDILIKSIAPSIYGHEDVKKAILLQLF----GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTS-- 350 (682)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHC----CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEC--
T ss_conf 999999741510381999999999960----89766479986202422699817982519999999886488407972--
Q ss_pred HHHHCCCCCCHHCCC---CCHHCC--CCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 886124653011047---800025--644431003555158517774044550289999999987775021779977612
Q gi|254780163|r 541 SEYMERHAVSRLIGA---PPGYVG--FGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 541 sey~e~~~vs~LiGa---ppGYvG--~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
T Consensus 351 ---gkgss~~GLTAav~rd~~-tge~~LeaGALVlAD----~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIa------- 415 (682)
T COG1241 351 ---GKGSSAAGLTAAVVRDKV-TGEWVLEAGALVLAD----GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIA------- 415 (682)
T ss_pred ---CCCCCCCCCEEEEEECCC-CCEEEEECCEEEEEC----CCEEEEEECCCCCHHHHHHHHHHHHHCEEEEC-------
T ss_conf ---641254573069997067-760788677799924----97799970567776789999999875275120-------
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECC-CCCHH----HHHHHHHHHH-----
Q ss_conf 5429999424214553303689882111488999998728878817768289628-89999----9999999999-----
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFF-PLSSD----IIRQVVHKFI----- 685 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~-~l~~~----~~~~i~~~~l----- 685 (798)
T Consensus 416 -KAGI~atLnARcsvLAAaNP~~Gryd~~~~~~en--I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~ 492 (682)
T COG1241 416 -KAGITATLNARCSVLAAANPKFGRYDPKKTVAEN--INLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPE 492 (682)
T ss_pred -CCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHH--CCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf -5542541114444566518877767999997885--5898357751775477057888533599999999986345653
Q ss_pred ---------------HHHHH---HHHHCCCEEEECHHHHHHHHHCCCCCC-------------CCCHHHHHHHHHHHHHH
Q ss_conf ---------------99999---998669889998899999997189810-------------15326799999862359
Q gi|254780163|r 686 ---------------MKLEL---QLQEKGISFHFSEEVINWLVSHGYDVK-------------MGARPLERIIKEHVKVP 734 (798)
Q Consensus 686 ---------------~~l~~---~l~~~~i~l~~~~~~~~~l~~~~~~~~-------------~GAR~l~r~i~~~i~~~ 734 (798)
T Consensus 493 ~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiR--LaeA 570 (682)
T COG1241 493 ETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIR--LAEA 570 (682)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--HHHH
T ss_conf 22333322222346589999999987505896128999999999998765201223456754561999999999--9999
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99999629676888
Q gi|254780163|r 735 LADEILFGKLKKGG 748 (798)
Q Consensus 735 la~~il~~~~~~g~ 748 (798)
T Consensus 571 ~Ak~rLS~~V~~eD 584 (682)
T COG1241 571 HAKMRLSDVVEEED 584 (682)
T ss_pred HHHHHCCCCCCHHH
T ss_conf 88654447778899