HHsearch alignment for GI: 254780163 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=97.64  E-value=0.00048  Score=48.20  Aligned_cols=148  Identities=22%  Similarity=0.377  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHH----------CCCCCHHHHEEEEEEEEHHH
Q ss_conf             11222178999999998622--6778748966764116689999999985----------48988345201445540467
Q gi|254780163|r  203 VDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIV----------DGMVPDILLGARIFSLDMGN  270 (798)
Q Consensus       203 LDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~----------~~~vp~~l~~~~i~~ld~~~  270 (798)
T Consensus       140 ~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGA  219 (464)
T COG2204         140 GGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGA  219 (464)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCC
T ss_conf             67752069999999999999847799789977898758999999986074458992563346489888777761456567


Q ss_pred             HHC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEE
Q ss_conf             530-634312378999999987203898399973616630155444344777888876630266-------------038
Q gi|254780163|r  271 LIA-GTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGA-------------VRC  336 (798)
Q Consensus       271 l~a-g~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~-------------~~~  336 (798)
T Consensus       220 FTGA~~~r~G~fE~-----------A~GGTLfLDEI~~m---------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRi  279 (464)
T COG2204         220 FTGAITRRIGRFEQ-----------ANGGTLFLDEIGEM---------PLELQVKLLRVLQEREFERVGGNKPIKVDVRI  279 (464)
T ss_pred             CCCCCCCCCCCEEE-----------CCCCEEEEECCCCC---------CHHHHHHHHHHHHCCEEEECCCCCEECEEEEE
T ss_conf             67764345761577-----------37965873231109---------99999999999870706735888600001699


Q ss_pred             EEECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHH
Q ss_conf             87304899999852011---143200144306878689
Q gi|254780163|r  337 IGSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIED  371 (798)
Q Consensus       337 IgatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~  371 (798)
T Consensus       280 IaaT~~d-L~~~v~~G~FReDLyyRLnV~~i~iPpLRE  316 (464)
T COG2204         280 IAATNRD-LEEEVAAGRFREDLYYRLNVVPLRLPPLRE  316 (464)
T ss_pred             EEECCCC-HHHHHHCCCCHHHHHHHHCCCEECCCCCCC
T ss_conf             9605778-999988197378888652331104876223