HHsearch alignment for GI: 254780163 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=98.98 E-value=9.9e-08 Score=74.72 Aligned_cols=175 Identities=28% Similarity=0.396 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHHHHH---HCCCCC---CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCC
Q ss_conf 112221789999999986---226778---74896676411668999999998548988345201445540467530634
Q gi|254780163|r 203 VDILVGRHEEINRTIQIL---CRRSKN---NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTR 276 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL---~RR~KN---n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~ 276 (798)
T Consensus 25 l~efiGQ~~vk~~-L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--------n~k~ts--Gp~l-eK-- 90 (332)
T COG2255 25 LDEFIGQEKVKEQ-LQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV--------NLKITS--GPAL-EK-- 90 (332)
T ss_pred HHHHCCHHHHHHH-HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------CEEECC--CCCC-CC--
T ss_conf 8885183999999-99999999844987674786479987688899999998567--------737636--6201-57--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--------------------CCEEE
Q ss_conf 3123789999999872038983999736166301554443447778888766302--------------------66038
Q gi|254780163|r 277 YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--------------------GAVRC 336 (798)
Q Consensus 277 ~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--------------------g~~~~ 336 (798)
T Consensus 91 -~gD----laaiLt~Le--~~DVLFIDEIHrl---------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 91 -PGD----LAAILTNLE--EGDVLFIDEIHRL---------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -HHH----HHHHHHCCC--CCCEEEEEHHHHC---------CHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEE
T ss_conf -265----999986398--6776777255314---------742898964675310577897248755347637998137
Q ss_pred EEECCHHHHHHHHHCCHHHHHHCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 8730489999985201114320014-430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 337 IGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 337 IgatT~~ey~~~~e~d~al~rrF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
T Consensus 155 IGATTr~G~----l-t~PLrdRFGi~~rlefY~~~eL~~Iv~----r~a~~l~i~i~~~~a~eIA~rS------RGTPRI 219 (332)
T COG2255 155 IGATTRAGM----L-TNPLRDRFGIIQRLEFYTVEELEEIVK----RSAKILGIEIDEEAALEIARRS------RGTPRI 219 (332)
T ss_pred EEECCCCCC----C-CCHHHHHCCCEEEEECCCHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHC------CCCCHH
T ss_conf 510134664----5-633688628604540588899999999----8888738776857999999863------699389
Q ss_pred HHHHHHH
Q ss_conf 9889986
Q gi|254780163|r 416 AIDVIDE 422 (798)
Q Consensus 416 AidllDe 422 (798)
T Consensus 220 AnRLLrR 226 (332)
T COG2255 220 ANRLLRR 226 (332)
T ss_pred HHHHHHH
T ss_conf 9999999