HHsearch alignment for GI: 254780163 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=98.88 E-value=5.7e-08 Score=76.42 Aligned_cols=200 Identities=24% Similarity=0.315 Sum_probs=121.5
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC
Q ss_conf 10000246653458999999999877520445657874068861432003889999987304773377206886124653
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v 549 (798)
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk----~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l-e---- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAK----KRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL-E---- 89 (332)
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHH----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCC-C----
T ss_conf 3586548885183999999999999998----449876747864799876888999999985677376366201-5----
Q ss_pred CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC--CC---CCEE--CCC-CEEEE
Q ss_conf 0110478000256444310035551585177740445502899999999877750217--79---9776--125-42999
Q gi|254780163|r 550 SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD--QS---GKKI--SFR-NVILI 621 (798)
Q Consensus 550 s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd--~~---Gr~v--df~-n~iii 621 (798)
T Consensus 90 ------K~g----DlaaiLt~---Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 90 ------KPG----DLAAILTN---LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ------CHH----HHHHHHHC---CCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEE
T ss_conf ------726----59999863---98677677725531474289896467531057789724875534763799813751
Q ss_pred EECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 94242145533036898821114889999987288788177682896288999999999999999999999866988999
Q gi|254780163|r 622 MTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHF 701 (798)
Q Consensus 622 ~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~ 701 (798)
T Consensus 157 ATTr~G~------------------lt~PLrdRF--------Gi~~rlefY~~~eL~~Iv~r~a---------~~l~i~i 201 (332)
T COG2255 157 ATTRAGM------------------LTNPLRDRF--------GIIQRLEFYTVEELEEIVKRSA---------KILGIEI 201 (332)
T ss_pred ECCCCCC------------------CCCHHHHHC--------CCEEEEECCCHHHHHHHHHHHH---------HHHCCCC
T ss_conf 0134664------------------563368862--------8604540588899999999888---------8738776
Q ss_pred CHHHHHHHHHCCC-CCCCCCHHHHHH
Q ss_conf 8899999997189-810153267999
Q gi|254780163|r 702 SEEVINWLVSHGY-DVKMGARPLERI 726 (798)
Q Consensus 702 ~~~~~~~l~~~~~-~~~~GAR~l~r~ 726 (798)
T Consensus 202 ~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 202 DEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 85799999986369938999999999